lowQualScore : 1 6666666666666666666 1
lowQualScore : 7 44 77 0000000000000000000 2 6666 2 7
lowQualScore : . .. .. ................... . .... . .
lowQualScore : 0 66 00 2222222222222222222 2 7777 5 5
consensus : CTAATCAGCGGACGATTACCTCT--ACGTTTAAATCA-CGTT-GAAATGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
Reference ( gi|3 ) : CTTATCAGCGGACGATTACCTCT--ACGCTTAAATCA-CGTT-AAAGTAGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
gi|7 : CTAATCAGCGGGCGATTACCTCT-----------TTA-CGTTTGAAATGGAACATA----CCGAACTATTCAACCGAT-GCTTCGGG
gi|13 : gctccTCAGCGGACGATTACCTCT---CGTTTAAATCA-CGTT-GAAATGAAAGAGAA---CAGAACTAGTCAAgg
gi|11 : cTCAGCGAACGATTGTCTCT--ACATTTAAATGA-------------AAGAGAA---TCAAACTATTCAGTCGAT-GCTTCAGGA
gi|5 : agTCAGCGAACGATTTCCTCT--ACGTTGCAAT--------------GAAGATAA---TCAAACTATTCAACCGAT-GC-gcg
gi|10 : gctccctagTCAGCGAACAATTTCCTCT--ACGTTTAA-------TT-AAAA------AGAA---TCGAACTACTCAATTGAT-ACTTTGGGAtctggagagta
gi|14 : tccctagTCAGCGGATGATTACCTCT--ACGTT-------------------GAA--------TCGAACTGTTCAACCAAT-AC-a
gi|2 : ctccctacCAACGGGCGATTACCTCT--ACGTTTTAATCA-C--C-GAAATAGAAG-GGA---TCGAACTTTTCAACAGAT-GC-TTGGGtcacgt
gi|4 : ttcctagaCAGCGGATAAGTACCTCT--ACATTTAAATC---GTT-GAAACAGAAGATAA---TTAAATTATTCAACCAAT-GC-TCCGGgagagt
gi|9 : ccccagcCAGCAGACGATTACCTCT--AAGTT----------TT-AGGG-AGAAAAAA-----CGAACTATTCAATCGAC-GC-g
gi|6 : tccagcAACGGACAATTACTTAT--ACATTT-------CGTTGAAAATTGAATAGAA---TGGAACAATTCAACTGAT-GC-ttaggagag
gi|8 : tatacttcccagtgGCGGAAGATTTCCTCT--AC-TTTAAATCACCATT-GAAATGGAAGA-AA---CAGAACTATTTATCTGATAAT-TTGGGAt
gi|1 : CGGACGATTATCTTTTTACGTTTAAAACA-C-----AATTAGA-GAGAA---TCGAAC-ATTCAACCGAT-GC-ga
gi|15 : tacgcttcctatA-CATT-TAAATGG--GAAAA---ACAAACTATTCAACCGAT-TC-gttggagagtag
gi|18 : ctctctagtcagcggactTT-GAAATTGAAAATA----TCGAACTGTTCAACTGAT-GCTTCGGGAttat
gi|16 : AAGAGAT---TCAAACTACTCAACCGGT-GCATCGGGAg
gi|17 : tcttcgttccttAAGAGAACTATCAAACTATTTAACTGCT-GCTTCAGGAgagtaacatcac
gi|12 : agatgaAGAA---TCGAACTATTCAACCGAT-GCTTCGGGAgtgta
Alignments
lowQualScore : 44444444444444444444 1
lowQualScore : 4 33 22222222222222222222 0 333 2 6
lowQualScore : . .. .................... . ... . .
lowQualScore : 1 99 33333333333333333333 1 999 4 5
consensus : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCAC-G-TTGAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
Reference ( family-834 ) : CTAATCAGCGGACGATTACCTCT--ACGTTTAAATCAC-G-TTGAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
gi|1 : CGGACGATTATCTTTTTACGTTTAAAACAC-------AA-TTAGAGAGAA---TCGAAC-ATTCAACCGAT-GC-
gi|10 : tacgcttcctatCTAGTCAGCGAACAATTTCCTCT--ACGTTTAA--------TTAAAA-------AGAA---TCGAACTACTCAATTGAT-ACTTTGGGAgttggagagtag
gi|11 : tccAGTCAGCGAACGATTGTCTCT--ACATTTAAAT--------------GAAAGAGAA---TCAAACTATTCAGTCGAT-GCTTCAGGAa
gi|12 : AGAA---TCGAACTATTCAACCGAT-GCTTCGGGAgcg
gi|13 : gcttcctcgtcagcgaagacgacttctacaTCAGCGGACGATTACCTCT---CGTTTAAATCAC-G-TTGAAA-TGAAAGAGAA---CAGAACTAGTCAAgagtaac
gi|14 : cCTACTCAGCGGATGATTACCTCT--ACGTT-------------------------GAA---TCGAACTGTTCAACCAAT-AC-
gi|15 : ctccCTAGTCAGCGGAC---------T--ACATTTAAAT--------------GG--GAAAA---ACAAACTATTCAACCGAT-TC-tcacgt
gi|16 : ctctAAGAGAT---TCAAACTACTCAACCGGT-GCATCGGGAttat
gi|17 : tcttcgttccttAGA-TGAAAGAGAACTATCAAACTATTTAACTGCT-GCTTCAGGAgagtaacatcac
gi|18 : -TTGAAA-TTGAAAATA----TCGAACTGTTCAACTGAT-GCTTCGGGAgtgta
gi|2 : CTAGACAACGGGCGATTACCTCT--ACGTTTTAATCAC----CGAAA-TAGAAG-GGA---TCGAACTTTTCAACAGAT-GC-TTGGGg
gi|3 : ttcCTTATCAGCGGACGATTACCTCT--ACGCTTAAATCAC-G-TTAAAG-TAGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGAgagagt
gi|4 : CCAGCCAGCGGATAAGTACCTCT--ACATTTAAATC---G-TTGAAA-CAGAAGATAA---TTAAATTATTCAACCAAT-GC-TCCGG
gi|5 : ccCTAGTCAGCGAACGATTTCCTCT--ACGTT-------------GCAA-TG-AAGATAA---TCAAACTATTCAACCGAT-GC-g
gi|6 : gctccCCAGTGAACGGACAATTACTTAT--ACATTT------C-G-TTGAAAATTGAATAGAA---TGGAACAATTCAACTGAT-GC-tctggagagta
gi|7 : tatacttcCTAATCAGCGGGCGATTACCTCT-----------TTAC-GTTTGAAA-TGGAACAT-A---CCGAACTATTCAACCGAT-GCTTCGGGt
gi|8 : gctccGCGGAAGATTTCCTCT--AC-TTTAAATCACCA-TTGAAA-TGGAAGA-AA---CAGAACTATTTATCTGATAAT-TTGGGAgg
gi|9 : CCAGCCAGCAGACGATTACCTCT--AAGTTTTAG---------------GGAGAAAAA---ACGAACTATTCAATCGAC-GC-ga
Alignments
lowQualScore : 44444444444444444444 1
lowQualScore : 33 22222222222222222222 0 333 2 6
lowQualScore : .. .................... . ... . .
lowQualScore : 99 33333333333333333333 1 999 4 5
consensus : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCAC-GTT-GAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
Reference ( family-834 ) : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCAC-GTT-GAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
gi|1 : CGGACGATTATCTTTTTACGTTTAAAACAC-------AA-TTAGAGAGAA---TCGAAC-ATTCAACCGAT-GC-
gi|10 : tacgcttcctatCTAGTCAGCGAACAATTTCCTCT--ACGTTTAA-------TT-AAAA-------AGAA---TCGAACTACTCAATTGAT-ACTTTGGGAgttggagagtag
gi|11 : tccAGTCAGCGAACGATTGTCTCT--ACATTTAAAT--------------GAAAGAGAA---TCAAACTATTCAGTCGAT-GCTTCAGGAa
gi|12 : AGAA---TCGAACTATTCAACCGAT-GCTTCGGGAgcg
gi|13 : gcttcctcgtcagcgaagacgacttctacaTCAGCGGACGATTACCTCT---CGTTTAAATCAC-GTT-GAAA-TGAAAGAGAA---CAGAACTAGTCAAgagtaac
gi|14 : cCTACTCAGCGGATGATTACCTCT--ACGTT-------------------------GAA---TCGAACTGTTCAACCAAT-AC-
gi|15 : ctccCTAGTCAGCGGAC---------T--ACATTTAAAT--------------GG--GAAAA---ACAAACTATTCAACCGAT-TC-tcacgt
gi|16 : ctctAAGAGAT---TCAAACTACTCAACCGGT-GCATCGGGAttat
gi|17 : tcttcgttccttAGA-TGAAAGAGAACTATCAAACTATTTAACTGCT-GCTTCAGGAgagtaacatcac
gi|18 : TT-GAAA-TTGAAAATA----TCGAACTGTTCAACTGAT-GCTTCGGGAgtgta
gi|2 : CTAGACAACGGGCGATTACCTCT--ACGTTTTAATCAC---C-GAAA-TAGAAG-GGA---TCGAACTTTTCAACAGAT-GC-TTGGGg
gi|3 : ttcTCAGCGGACGATTACCTCT--ACGCTTAAATCAC-GTT-AAAG-TAGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGAgagagt
gi|4 : cttaCCAGCCAGCGGATAAGTACCTCT--ACATTTAAATC---GTT-GAAA-CAGAAGATAA---TTAAATTATTCAACCAAT-GC-TCCGG
gi|5 : ccCTAGTCAGCGAACGATTTCCTCT--ACGTT-------------GCAA-TG-AAGATAA---TCAAACTATTCAACCGAT-GC-g
gi|6 : gctccCCAGTGAACGGACAATTACTTAT--ACATTT------C-GTT-GAAAATTGAATAGAA---TGGAACAATTCAACTGAT-GC-tctggagagta
gi|7 : tatacttcCTAATCAGCGGGCGATTACCTCT-----------TTAC-GTTTGAAA-TGGAACATA----CCGAACTATTCAACCGAT-GCTTCGGGt
gi|8 : gctccGCGGAAGATTTCCTCT--AC-TTTAAATCACCATT-GAAA-TGGAAGA-AA---CAGAACTATTTATCTGATAAT-TTGGGAgg
gi|9 : CCAGCCAGCAGACGATTACCTCT--AAGTTTTAG---------------GGAGAAAAA---ACGAACTATTCAATCGAC-GC-ga
Alignments
lowQualScore : 44444444444444444444 1
lowQualScore : 33 22222222222222222222 0 333 2 6
lowQualScore : .. .................... . ... . .
lowQualScore : 99 33333333333333333333 1 999 4 5
consensus : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCAC-GTT-GAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
Reference ( family-834 ) : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCAC-GTT-GAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
gi|1 : CGGACGATTATCTTTTTACGTTTAAAACAC-------AA-TTAGAGAGAA---TCGAAC-ATTCAACCGAT-GC-
gi|10 : tacgcttcctatCTAGTCAGCGAACAATTTCCTCT--ACGTTTAA-------TT-AAAA-------AGAA---TCGAACTACTCAATTGAT-ACTTTGGGAgttggagagtag
gi|11 : tccAGTCAGCGAACGATTGTCTCT--ACATTTAAAT--------------GAAAGAGAA---TCAAACTATTCAGTCGAT-GCTTCAGGAa
gi|12 : AGAA---TCGAACTATTCAACCGAT-GCTTCGGGAgcg
gi|13 : gcttcctcgtcagcgaagacgacttctacaTCAGCGGACGATTACCTCT---CGTTTAAATCAC-GTT-GAAA-TGAAAGAGAA---CAGAACTAGTCAAgagtaac
gi|14 : cCTACTCAGCGGATGATTACCTCT--ACGTT-------------------------GAA---TCGAACTGTTCAACCAAT-AC-
gi|15 : ctccCTAGTCAGCGGAC---------T--ACATTTAAAT--------------GG--GAAAA---ACAAACTATTCAACCGAT-TC-tcacgt
gi|16 : ctctAAGAGAT---TCAAACTACTCAACCGGT-GCATCGGGAttat
gi|17 : tcttcgttccttAGA-TGAAAGAGAACTATCAAACTATTTAACTGCT-GCTTCAGGAgagtaacatcac
gi|18 : TT-GAAA-TTGAAAATA----TCGAACTGTTCAACTGAT-GCTTCGGGAgtgta
gi|2 : CTAGACAACGGGCGATTACCTCT--ACGTTTTAATCAC---C-GAAA-TAGAAG-GGA---TCGAACTTTTCAACAGAT-GC-TTGGGg
gi|3 : ttcTCAGCGGACGATTACCTCT--ACGCTTAAATCAC-GTT-AAAG-TAGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGAgagagt
gi|4 : cttaCCAGCCAGCGGATAAGTACCTCT--ACATTTAAATC---GTT-GAAA-CAGAAGATAA---TTAAATTATTCAACCAAT-GC-TCCGG
gi|5 : ccCTAGTCAGCGAACGATTTCCTCT--ACGTT-------------GCAA-TG-AAGATAA---TCAAACTATTCAACCGAT-GC-g
gi|6 : gctccCCAGTGAACGGACAATTACTTAT--ACATTT------C-GTT-GAAAATTGAATAGAA---TGGAACAATTCAACTGAT-GC-tctggagagta
gi|7 : tatacttcCTAATCAGCGGGCGATTACCTCT-----------TTAC-GTTTGAAA-TGGAACATA----CCGAACTATTCAACCGAT-GCTTCGGGt
gi|8 : gctccGCGGAAGATTTCCTCT--AC-TTTAAATCACCATT-GAAA-TGGAAGA-AA---CAGAACTATTTATCTGATAAT-TTGGGAgg
gi|9 : CCAGCCAGCAGACGATTACCTCT--AAGTTTTAG---------------GGAGAAAAA---ACGAACTATTCAATCGAC-GC-ga
blockSeqs : . AAATCACCATTGAAATGG CTA A T
blockSeqs : . AAATCACGTTGAAATGA . . T
blockSeqs : . AAATCACGTTAAAGTAG . . T
blockSeqs : . TAATCACCGAAATAG . . A
blockSeqs : . AAATCGTTGAAACAG . . T
blockSeqs : . TTACGTTTGAAATGG . . T
blockSeqs : . CGTTGAAAATTG . . T
blockSeqs : . AATTAAAA . . .
blockSeqs : . AAATGA . . .
blockSeqs : . AAATGG . . .
blockSeqs : . GCAATG . . .
blockSeqs : . TAGGG . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : ** AAATCCGTTGAAATGG****
originalCons : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCAC-GTT-GAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
finalCons : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATCCGTTGAAATGG----AAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
Alignments
lowQualScore : 666666666666 1
lowQualScore : 77 222222222222 3333 0 333 2 6
lowQualScore : .. ............ .... . ... . .
lowQualScore : 99 444444444444 1111 1 999 4 5
consensus : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAAT---C-TTGAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
Reference ( family-834 ) : CTAGTCAGCGGACGATTACCTCT--ACGTTTAAATC--CGTTGAAA-TGGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGA
gi|1 : CGGACGATTATCTTTTTACGTTTAAAACA-C-----AA-TTAGAGAGAA---TCGAAC-ATTCAACCGAT-GC-
gi|10 : tacgcttcctatCTAGTCAGCGAACAATTTCCTCT--ACGTTTAA-------TTAAAA-------AGAA---TCGAACTACTCAATTGAT-ACTTTGGGAgttggagagtag
gi|11 : tccAGTCAGCGAACGATTGTCTCT--ACATTTAAAT-------------GAAAGAGAA---TCAAACTATTCAGTCGAT-GCTTCAGGAa
gi|12 : AGAA---TCGAACTATTCAACCGAT-GCTTCGGGAgcg
gi|13 : gcttcctcgtcagcgaagacgacttctacaTCAGCGGACGATTACCTCT---CGTTTAAATCA-CGTTGAAA-TGAAAGAGAA---CAGAACTAGTCAAgagtaac
gi|14 : cCTACTCAGCGGATGATTACCTCT--ACGTT------------------------GAA---TCGAACTGTTCAACCAAT-AC-
gi|15 : ctccCTAGTCAGCGGA---------CT--ACATTT------------AAA-TGG--GAAAA---ACAAACTATTCAACCGAT-TC-tcacgt
gi|16 : ctctAAGAGAT---TCAAACTACTCAACCGGT-GCATCGGGAttat
gi|17 : tcttcgttccttAGA-TGAAAGAGAACTATCAAACTATTTAACTGCT-GCTTCAGGAgagtaacatcac
gi|18 : TTGAAA-TTGAAAATA----TCGAACTGTTCAACTGAT-GCTTCGGGAgtgta
gi|2 : CTAGACAACGGGCGATTACCTCT--ACGTTTTAAT---CACCGAAA-TAGAAG-GGA---TCGAACTTTTCAACAGAT-GC-TTGGGg
gi|3 : ttcTCAGCGGACGATTACCTCT--ACGCTTAAATCA-CGTTAAAG-TAGAAGAGAA---TCGAACTATTCAACCGAT-GC-TCGGGAgagagt
gi|4 : cttaCCAGCCAGCGGATAAGTACCTCT--ACATTTAAATC---GTTGAAA-CAGAAGATAA---TTAAATTATTCAACCAAT-GC-TCCGG
gi|5 : ccCTAGTCAGCGAACGATTTCCTCT--ACGTT------------GCAA-TG-AAGATAA---TCAAACTATTCAACCGAT-GC-g
gi|6 : gctccCCAGTGAACGGACAATTACTTAT--ACATTT-------CGTTGAAAATTGAATAGAA---TGGAACAATTCAACTGAT-GC-tctggagagta
gi|7 : tatacttcCTAATCAGCGGGCGATTACCTCTTTACGTTT-----------GAAA-TGGAACATA----CCGAACTATTCAACCGAT-GCTTCGGGt
gi|8 : gctccGCGGAAGATTTCCTCT--AC-TTTAAATCACCATTGAAA-TGGAAGA-AA---CAGAACTATTTATCTGATAAT-TTGGGAgg
gi|9 : CCAGCCAGCAGACGATTACCTCT--AAGTTTTAG--------------GGAGAAAAA---ACGAACTATTCAATCGAC-GC-ga