lowQualScore : 3333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 22 1 55555 1 7777777777 22 1 2222 1 0000000000000000000000000000000000000000000000 1 444 1 4 55 7777777777777777777777777777777777777777 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 77777777 55555555555555 111111111 111 222222 1 333 22222 44444444444444444444444444444444444444 6666666666666 2 555555555 666666666666666 2222 1 1 11 333 11 888888888888888888888888888888888888888888888888 1 1 1 1 4444 1111 1 444444 33 44444 2222222 1 222 666666666666666 1 11 33333333333333333333 11111111 1 333333333 11 11 99999999999999999999999999999999999999999 1 222 1 2 2222 11 1 44444444 1 4 4
lowQualScore : 33 6 7 99999 7 8888888888 6 6 6 11 5 7777 5 1111111111111111111111111111111111111111111111 6 5 555 5 0 6 55 0 4444444444444444444444444444444444444444 2 99 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 5 1 1 4 44444444 6 22222222222222 333333333 000 0 888 99 666666 0 000 55555 2 44444444444444444444444444444444444444 8 8 6666666666666 9 4 3 333333333 666666666666666 5555 1 6 5 7 33 000 3 88 444444444444444444444444444444444444444444444444 8 6 0 7 2 8 0 44 7 6 3 6 3 4 1111 3333 3 111111 8 00 99999 0000000 0 6 3 888 222222222222222 0 0 88 9 6 44444444444444444444 88888888 11 0 333333333 4 8 88 5 4 33 2 55555555555555555555555555555555555555555 5 555 5 2 1 6 1111 2 2 22 0 6 22 6 2 00000000 5 6 0 0 6
lowQualScore : .. . . ..... . .......... . . . .. . .... . .............................................. . . ... . . . .. . ........................................ . .. ......................................................................................................... . . . . . ........ . .............. ......... ... . ... .. ...... . ... ..... . ...................................... . . ............. . . . ......... ............... .... . . . . .. ... . .. ................................................ . . . . . . . .. . . . . . . .... .... . ...... . .. ..... ....... . . . ... ............... . . .. . . .................... ........ .. . ......... . . .. . . .. . ......................................... . ... . . . . .... . . .. . . .. . . ........ . . . . .
lowQualScore : 00 0 0 00000 0 0000000000 0 0 0 00 0 0000 0 0000000000000000000000000000000000000000000000 0 0 000 0 0 0 00 7 4444444444444444444444444444444444444444 2 22 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 7 7 1 6 55555555 0 77777777777777 777777777 000 4 555 22 222222 6 888 00000 5 77777777777777777777777777777777777777 3 3 7777777777777 0 7 7 777777777 777777777777777 0000 0 0 7 0 88 555 2 88 000000000000000000000000000000000000000000000000 8 5 0 2 2 8 0 88 0 7 2 0 2 0 2222 0000 3 555555 8 00 88888 0000000 0 0 5 888 555555555555555 8 0 88 5 0 00000000000000000000 22222222 55 0 555555555 2 8 22 0 2 88 0 33333333333333333333333333333333333333333 5 888 0 5 2 0 2222 2 5 88 2 5 00 0 8 33333333 0 0 0 0 0
consensus : NNNACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCT----TTTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATGTGT----TGGTGGCGGGNG-GGAGGA-TC-C--C-GTAAAATTGTAATATTTAAAACACCANTTTCTGCA--TT-----CT----ACGTTCTAG-AAG-TGTTTAGGATAAA---------------ACAA-GCTTCTTAGG----GATTCAAATCG----GG---T-A----------CTCT-TATGCACTGAAAGTCNATAAAA--A-----CTTGCACACAACTCTGATTAACATCTCATTG-AT------TGTA---TG----GATA---TACCATCAATT-TGAAAT--GTG-TTACACTGTAAATTCATTC-----CANTCA-----------AT-CGCTGCC---GC------------CAGGAAAAATAAG--------TG---TGCCGTGTNCA-GTGTTTTA--C--A-CTTGCAGCTACACC-GT----A-ATANTTTTTTAATCAAAATACGTGTTGGGACAA--CGT-A-TATGCTGACCC-CGCTCAC----------C---TGA-----------C----AT-------------TGCGGNAGGGGG-TCATCCCGCCCCGG-CTGCTACGCCTTTGCTTTCATGTGTACAGANAATAACAT--TTTA-TAAACG-GTGTGACCC--GATTTCATCGGAGGTAAACGA--TCATTAT-AATG-ACTCATTCCAATATCATNTCATCTATAACC-----T---------ATATACTAAATA-TCAGAGTATCTTTTAAACGTTT-------TANCCCAAA-ATATTAAATAATACNCTAAGACCAAAGAA-TCCGT---T---ATCAAGTAAATAAAATTGGAGNNACGATATCCA--ACCTATATAAAA----ATNGACTCGCCCTTCATT-AGTAT-T-TTGGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACGA-TCCAT----AAAGGAAGGGGATTNATTTCCACCAGCCATGGCATATTAAATTGTGTTATGAAATAAACAANAAAAGTACCATC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( gi|1 ) : TTCACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGTTTGGTGGTGGTGGGGGTGGAGGA-TC-C--C-GTAAAATAGTAATATTTAAAACACCAATTTCTGCA--TT-----CA----ACGTTC----AAG-T-----------A---------------ACAA-GTTTCTTAAG----GAG-CAAATTT----GG---TCA----------CTCT-TATGCACTGAAAGTCAATAAAA--ATATA-CTTGCACATAACTCTGATTAACATCTCATTGCAT------TGTA---TG----GATA---TACCATCAATT-TAAAAT--ATG-TTGCACTGTAAACGCATTC-----CACTTA-----------AT-CACAAGC---GG------------CAGGAATAATTAG--------TG---TGCCACGTACATGTGTTTTA--T--ATCTTGCAGCTACACT-GT----A-ACACGTTTCCAATCAAAATATATATTTGGTCAA--CGT-T-TATGCTGATCC-CGCTCAC----------C---T-------------C----AC-------------TGTAGGAGGGGG-TCATTCCACCTCGG-TTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTG-TTAACG-GTGTGGCCCCTAATTTCATTGAACCTAAATAT--TCAATAT-AATG-ATTCATTCTAATATTATTTCAAATATAACC-----T---------ATATACTAAATA-TCAGGATATATTTTAAATGTAT-------GAT--------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT---T---ACCAAGTAAATACAATTGGAGGTATGGTATCCA--ACCTATACAAAAC--AATGGATTC----TCCATT-A-TATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACAAGTTCAT----AAAGGAAGAGGATTCATTTCCACCAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACACACT
gi|14 : ACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCT----TTTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATT
gi|8 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtactTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT------GTTGCGGGAA----------------GTACAATTGTAATATCTAAAACACCATTTTCTGCAGGTT-----------ACGTTCTAGTAAG-TGTTTAGGATAAA---------------ACAA-GCCTCTTAGG----GATTCAAATCG----GG---TAC----------CTCT-TTTGTACTGAAAATCCATAAAA--A-----CTTTCACACAACTCTGATTAACAGCTCATTGTACGAGATATGTA---TA----GGTA---TACCCTTAATT-TAACAT--GTA-TTACACTGTGATAACATTC-----att
gi|11 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtGGTGTGTGGGTGTTGGTGGTGTGTGTGGGGGA-GCTC--C-AT-------CAAT-TTTAAAACACAAATTTCTTTA--TT-----CT----TTGTTC----AAG-T-----------AGATGCTTAGAATAAAACAA-GTCTTTTAAG----CATTCAAATCA----GG---T-A----------TTTTGTATGCACTGACAATCCATAAAA--G-A-A-CTTGCACACTACTCTAGTTAACATCTC--T---T------TGTG---AG----AATG---TACCATCATTT-TGAAAT--ATG-TTACACCGTAAaaggtaatgaatggttgt
gi|4 : GTATGTGT---GTGCAGGGAGGGG-GAAGGAATC-T--CTGTAAAATTTAAAAACTAAAAACATCAACTTCTGCA--TT-----CT----ACATTC----TAG-T-----------A---------------A-----TTTTTTAGGATACAAG--AAACTTCATCGGAATTCATATCTAGTACCTCT-CATGCACTGAAAGTCTATAAAA--gaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|16 : tatctatctctGGAGGA-TC-CGCC-TTAAAAT-GTGATATCTAAAACATTAACTACTACA--CTATAGTCA----GCGTTA----AGGAT-----------A---------------AAAAAGTTTCATAGG----GATTCAAATAT----GG---T-A----------C-CT-CATGCATCGAAAGTCAATAcacccagcatctttaaaacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|3 : ATAGTAATATTTAAAACACCATTTTATATA--TA-----CACACTACGTTCTAGAAAG-TGTTTAGGATAAA---------------ACAA-ACTTCTTAGG----GAT-TTAAATT----GG---ATA----------C-CT-T------TGAAAATCCATAAAA--A-----CTTGCACACATATCTGATCAATATCTCATTG-----------TA---TA----GATA---TACAATTAATTATGTAATGAATGATTAT-CTG-AAATTCATTCAAAAACAGTTATTTACTGCAATAT-TACAAGCACTGGATTCGCTGTCGCCAGGAAAAAGAAA--------AG---TGCCATGTTCA-GTGTTTTA--TGCATCTTTCAGCTACACCAGT----A-AT-CTTTTCTA-TCAAAATACATGTTGGGACAA--CAT-A-TATGCTGATCC--GCTCAC----------C---CAACCAAACCTGAAC----AT-------------TGTGGTAGGGGGGTCATACCGCCCCGG-TTGCTAC-CTTTTGCTGTCATGTATACAGATAACAACAT---TTA-TAAACG-GTGTGACCC--AATTTCATCGGAGGTAAA-ATCATCATTAT-ATTG-ACTCATTCCAATATCATTTCATCTATAACCTACAGT---------ATATACTAAATA-TCAGAGTATCTTTTAAACGTTT-------TACCCCAAACATATTAAATAATACCCTAAGTCCAATGAA-TCCAT---T---ATCAAGTAAATAAAATTGGAAAAATGATATTAA--ACCTATATAAAAccccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|7 : gggggtattctTATTTTAAACACCAGTTTATGCA--TT-----CT----AAGTTCTAGTAAG-TGTTTAAGATAAA---------------ACAA-GCTCCTTATG----GATTCAAATCG----GG---TAC----------CTCT-TATGCACTGAAAATCCATTAAA--A-----CCTGCACACAACTCTTATTAACATCTTA----AT-------GTA---TA----GATA---TACCATCAATT-TTAAAT--ATG------CTATAAA--CATTC-----
gi|12 : T-TATGCACAGAAAGTCAATAAAA--aaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|12 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatTGAA--TTAACAAAA---------TTGCATACATCTCTGATTAACATC-----ACAT------TGTA---TG----GATA---TCCTGTCAAcacccaccctcttttaaaacttaagtgaattaacaaaattgcatacatctctgattaacatcacattgtatggatatcctgtcaaaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|4 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatttatgcacagaaagtcaataaaacacccaccctcttttaaaacttaagAATGAAACAATGTAACTTGCACACAACTCTGATTAACATCTCATTGTAT------GATAACCTGTCAAAACA---TTCCAGTAAT----GAAT--G-G-TTAT-CTG-AAGTTAATTT-----TACTCA-----------ATTCGCTGCT---GC------------CAGGAATAATTAGGAATAATCTACACTGTCAAGTGTATATGTTT---------CTTGCAGCTGCACC-GTTAATATACAAGTTTT-AATCAACATATGTGTGAGGACAATGCGTATATATATTGACCC-CGCTCACATTGCCCAACC---TGAA----------C----AT-------------TGCGGGAAGGGG-TCGTCCCGGCCCGGCTTA-TACGCCTT-GCTTTCATGTGTAC---TAATAACTCGTTTTGATTAAaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttgaatgaTTGCCCACGACTATGAATAAAATCTCA-----T------TGTA---TG----GATATAGTACCATAAATT-CAAAAT--GTG-T
gi|7 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaaA-----------AT-CGCTGCC---GC------------CAAGAAAAATAAG--------TG---TGCCGTATACA-GTGTTTTAAGC--AACTAGCAGCTACACC-GT-------TATTTTTTTTATCAAAATGCATGTTGGGACAG--AGT-A-TATGCTGACCC-GGCTCAC----------A---T-------------C----ACCAAACCTGAACATTGCGGTAGGGGT-TCATCCCGCACCGG-CTGCTgatcctgtcaaaaatatt
gi|2 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggGGACAA--CGC-A-TATACTG-TCCGCGCTCAC----------CAAAT-------------CCAACAT-------------TGTTGAAAGGGG-TCAT-CCACCACGT-CTGCTACGGCTTTACTTTCACGTGTACAGAAAATAACAT--TTAA-TGAACG-GTGTGACCA--AACTTCATCGGAAGTAAACGA--TCATTTT-AATG-ACTCGTTCTAATATTATATCATTTGTAACC-----T---------ATATACTACATA-TCCGTGTATCTTCCAAACGTTT-------TACCCCAAAAATATTAAATGAAACACTAGGACTAAAAAA-TTCAT---A---ACTAAGTAAATGAGATTGGAGTTACGGTATTCC--ACCTATATAAAA----ATGGACTCGCTCTTCATT-AGCATGTCTTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATGA-TCCAT----AAAGAAAGGGGATTAATTTCCATCAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAAac
gi|10 : TTTGCTTTCGTGTGTACAGAAAATAAC---ATTTA-TAGATGAATGTGA--TCTGATTTCATTGTAGGTAAA-----TCAACAT---TGCACTCATTCCAATATTTTGCC---TATAACA-----TGAAAGAACAGTATATTAGATATTCAGG-TAAATTTTACCCCTA---------AA--------GATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGAAACGAGCTCTCCACCATCTGCACAAAATGAAACTGCCTC----T-CATTAA-TAT-------------TGGCAGTTTGAC-------TAGCTAGACAA-TCTATAATGAAAGGGAAAATATTCACAT-CAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACaatgaaaagaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|6 : tacacaTGTGACCC--AATTTCGTTGGAGGTAAATCA--TCA-TGTTAATG-ACTCATTCTAATATCATTTCAACTATAACC-----A---------ATATACTAAATA-TTAGAGTATTTTTTGAACGTTTTTCCCCAAAA--------TATAAAATAATACCCTAAAACCAAAGAA-TCCGT---T---ATCAAGTAAATAAAATTGGAGTAACGATATCCA--ACCTATATAAAAA--TATAGATTCACCCTTCATT-AATATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACGACTCCAT----AAGGGAAGGGGATTAATTTCTACCAGTCGTGT-ATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACC-TT-TTT-CAT
gi|9 : TTTGGCGGGAAAATAGCAAGACATGTCCAT----AAAGGAAAGGGATTCATTTCAACCAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|17 ): ACAAAAAATACATAGTTATGGGTACGATCGATTTTACAAATAATGTCTTCTTCCAACTTTATTTAGAACCGAAAACAGCATTTTAAATAGTCAGGCATCTTTTTAATATTTTATCCCAATAATGCCATTAGATCAAATAAACAAACCAAATGAAAACAGGATGTCCATCCTATGCAAAAATGGAACCGTTTCTCATTTATAT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 11 22 44444 8888888888 2222 33333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 11 333333 1 22222222222222222 1111 1 11 11111111 44444444444444 1111 1111 11 55555555555555555 444444444444444444 222222 1 22222 5555555 1 22222222222 1111 11111111111111111111111111111111111111 11 2 111 1111 2222222 666666666 11111 22222222222 1 333333333 111 22222 22222 1 1
lowQualScore : 4 4 4 5 4 88 3 77 3 3 2 3 3 66666 7777777777 3333 2 77777 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 2 2 5 88 444444 4 1 3 1 88888888888888888 1 0000 22 3 6 5 5 5 5 0 4 5 5 33 5 3 1 1 3 4 55555555 4 0 0 77777777777777 888 5 0000 7777 2 77 77 5 22 1 22222222222222222 44 0 1 666666666666666666 0 4 4 888888 4 1 0 55555 8888888 0 55555555555 3 2 0 7777 5 33333333333333333333333333333333333333 1 8 3 0 0 1 33 2 1 8 333 6666 6 1111111 3 7 1 2 222222222 6 6 99 1 3 1 88888 1 5 6 33333333333 3 888 99 99 99999 1 1 0 1 999999999 4 3 5 1 888 0 1 00000 3 5 8 44444 3 3
lowQualScore : . . . . . .. . .. . . . . . ..... .......... .... . ..... . .................................................................................. . . . . .. ...... . . . . ................. . .... .. . . . . . . . . . . .. . . . . . . ........ . . . .............. ... . .... .... . .. .. . .. . ................. .. . . .................. . . . ...... . . . ..... ....... . ........... . . . .... . ...................................... . . . . . . .. . . . ... .... . ....... . . . . ......... . . .. . . . ..... . . . ........... . ... .. .. ..... . . . . ......... . . . . ... . . ..... . . . ..... . .
lowQualScore : 0 0 0 5 0 55 0 55 0 0 5 0 0 55555 5555555555 5555 5 00000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 5 5 55 555555 2 0 3 0 22222222222222222 0 6666 22 4 5 0 0 0 0 8 5 0 0 22 0 6 8 0 6 0 44444444 4 1 4 66666666666666 888 0 6666 9999 7 99 99 7 33 7 11111111111111111 44 2 0 777777777777777777 2 0 0 888888 2 0 0 00000 0000000 0 00000000000 2 0 2 0000 0 00000000000000000000000000000000000000 0 0 2 8 8 0 88 0 2 0 888 5555 7 3333333 5 8 0 2 555555555 7 7 55 0 7 0 88888 0 2 7 00000000000 5 000 22 22 33333 0 4 0 4 555555555 2 5 0 4 000 8 0 00000 2 0 8 00000 3 3
consensus : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGGGG-GGAGGA-TC-C--C-GTAAAAT-GTAATATTTAAAACACCANTTTCTG----CATTCTACGTTCTAGTAA-G-TGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGT-A-C-TCT-TATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G-AT-TGTATGGATA---TACC-GTCAA----TT----TAA--AATG--TG-TTACACTGTAA-----------------ATTCATTCCACT----CAA---------T-CGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGT-----TTTA-GC-ATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTC----------AC----------C-AA-C-----TG-AACATTGCGGNAGGGGG-TCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT--TT-ATAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATT------NTAATGACTCATTCCAATATCATTTCANCTATAACCTA-AA-A----TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCC-AAA-ATATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAA--A--ATGGACTCGCCCTTCATTAA--TATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( family-758 ) : NNNACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGGNG-GGAGGA-TC-C--C-GTAAAATTGTAATATTTAAAACACCANTTTCTG----CATTCTACGTTCTAG-AA-G-TGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCGGGT-A-C-TCT-TATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G-AT-TGTATGGATA---TACC-ATCAA----TT----TGA--AATG--TG-TTACACTGTAA-----------------ATTCATTCCANT----CAA---------T-CGCTGCCGCCAGGAAAAATAAG------TGTGCCGTGTNCA-GTGT-----TTTA--C-A-CTTGCAGCTACACC-GT-AATANTT---TTTTAATCAAAATACGTGTTGGGACAACG----TATATGCTGACCCCGCTC----------AC----------C----------TG-A-CATTGCGGNAGGGGG-TCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGANAATAACAT--TTTATAAACGG-TGTGACCC--GATTTCATCGGAGGTAAA--CGATC-ATT------ATAATGACTCATTCCAATATCATNTCATCTATAACCTA---------TATACTAAATA-T-CAGAGTATCTTTTAAACGTTTTANCCC-AAA-ATATTAAATAATACNCTAAGACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATATAAA--A--ATNGACTCGCCCTTCATTAG--TATT--TTGGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTNATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAANAAAAGTACCATC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
gi|1 : ACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGT-TTGGTGGTGGTGGGGGTGGAGGA-TC-C--C-GTAAAATAGTAATATTTAAAACACCAATTTCTG----CATTCAACGTTC----AA-G-T-----------A-ACAAGTTTCTTAAGGAG-CAAATTTGGTCA-C-TCT-TATGCACTGAA-AGTCAAT-AA-A--AATATACTTGCACATAAC-TCTGATTAACATCTCATT------GCAT-TGTATGGATA---TACC-ATCAA----TT----TAA--AATA--TG-TTGCACTGTAA-----------------ACGCATTCCACT----TAA---------T-CACAAGCGGCAGGAATAATTAG------TGTGCCACGTACATGTGT-----TTTA--T-ATCTTGCAGCTACACT-GT-AACACGT---TTCCAATCAAAATATATATTTGGTCAACG----TTTATGCTGATCCCGCTC----------AC----------C----------T----CACTGTAGGAGGGGG-TCATTCCACCTCGGTTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTGTTAACGG-TGTGGCCCCTAATTTCATTGAACCTAAA--TATTC-AAT------ATAATGATTCATTCTAATATTATTTCAAATATAACCTA---------TATACTAAATA-T-CAGGATATATTTTAAATGTATGAT---------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT-TAC-----CAAGTAAATACAATTGGAGGTATGG--TATCCA--ACCTATACAAAACA--ATGGATT----CTCCATTA---TATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACA-AGTTCATAAAGGAAGAGGATTCATTTCCAC-----CAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACA
gi|10 : ttcTACACATTTGCTTTCGTGTGTACAGAAAATAACAT--TT-ATAGATGAATGTGATCT--GATTTCATTGTAGGTAAA--TCAAC-ATT------GCA----CTCATTCCAATAT---TTTGCCTATAACATGAAAGAACAGTATATTAGATA-TTCAGG--------TAAA--TTTTACCCC-TAA-AGATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGA--AACGAGCTCTCCACCATCTGCACAAA--A--TGAAACT-GCCTCTCATTAA--T-------------ATTGGCAGTTTGAC-------TAGCTAGACA-A-TCTATAATGAAAGGGAA--AATATTCACATCAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACcact
gi|11 : GTGT-T----GGTGGTGTGTGTGGGGGA-GCTC--C-AT-------CAAT-TTTAAAACACAAATTTCTT----TATTCTTTGTTCAAG-TA-GATGCTTAGAATAAA-ACAAGTCTTTTAAGCATTCAAATCAGGT-A-T-TTTGTATGCACTGAC-AATCCAT-AA-AAGAA----CTTGCACACTAC-TCTAGTTAACATCTC-T----------T-TGTGAGAATG---TACC-ATCAT----TT----TGA--AATA--TG-TTACACCGTAA-----------------
gi|12 : ggtgtgtggAATATATTGATCACC-CCTTATA----CATTCTA-----TAG-A--G-CGTTTTGTATAAACACACGCTTCATTGGCATTTATAACTGGT-A-T-T---TATGCACAGAA-AGTCAAT-AA-A--Agaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|12 : tgA-AGTGAATTAACA--AA----ATTGCATACATC-TCTGATTAACATCAC-----------AT-TGTATGGATA---TCCT-GTCAA----cacccaccctcttttaaaacttaagtgaattaacaaaattgcatacatctctgattaacatcacattgtatggatatcctgtcaaaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|14 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatttatgcacagaaagtcaataaaacacccaccctcttttaaaacttACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtact-GGAGGA-TC-CGCC-TTAAAAT-GTGATATCTAAAACATTAACTACTA----CA--CTATAGTC-----A-G-CGTTAAGGATAAA-A-AAGTTTCATAGGGATTCAAATATGGT-A-C--CT-CATGCATCGAA-AGTCAAT-Aatt
gi|16 : TGAACAATTTGT-AA-A---------TTGCCCACGAC-TATGAATAAAATCTCA-----------T-TGTATGGATATAGTACC-ATAAA----TT----CAA--AATG--TG-TGATCCTGTCA-----------------Accccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|17 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaaA--CGATCGATTTTACAAATAATGTCTTCTTCCAAC-----TTTATTTAGAACCGAAAACAG---CATTTTAAATAGT-CAG-GCATCTTTTTAATATTTTATCCC-----------AATAATGCCATTAGATCAAA------------------TAAACAAACCAAA-TGAAAACAGGA--TGTCCA--TCCTATGCAAA--A--ATGGAACCGTTTCTCATTTA--TATaaatatt
gi|2 : acaaaaaatacatagttatgggtGGACAACG----CATATACTGTCCGCGCTC----------AC----------CAAATC-----CA-A-CATTGTTGAAAGGGG-TCATCC-ACCACGTCTGCTACGGCTTTACTTTCACGTGTACAGAAAATAACAT--TTAATGAACGG-TGTGACCA--AACTTCATCGGAAGTAAA--CGATC-ATT------TTAATGACTCGTTCTAATATTATATCATTTGTAACCTA---------TATACTACATA-T-CCGTGTATCTTCCAAACGTTTTACCCCAAAA-ATATTAAATGAAACACTAGGACTAAAAAA-TTCAT-AAC-----TAAGTAAATGAGATTGGAGTTACGG--TATTCC--ACCTATATAAA--A--ATGGACTCGCTCTTCATTAGCATGTC--TTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATG-A-TCCATAAAGAAAGGGGATTAATTTCCAT-----CAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAA-AATGA-AAA
gi|3 : G-GGGGTA-TT-C--T-ATA-----GTAATATTTAAAACACCATTTTATATATACACACTACGTTCTAG-AAAG-TGTTTAGGATAAA-ACAAACTTCTTAGGGATTTAAATTGGAT-A-C--CT-T------TGAA-AATCCAT-AA-A--AA----CTTGCACACATA-TCTGATCAATATCTCATT------G------TATAGATA---TACA-ATTAA----TTA---TGT--AATGAATGATTAT-CTGAAATTCATTCAAAAACAGTTATTTACTGCAATATTACAAGCACTGGATT-CGCTGTCGCCAGGAAAAAGAAA------AGTGCCATGTTCA-GTGT-----TTTATGC-ATCTTTCAGCTACACCAGT-AAT-CTT---TTCTA-TCAAAATACATGTTGGGACAACA----TATATGCTGATCC-GCTC----------AC----------CCAACCAAACCTG-AACATTGTGGTAGGGGGGTCATACCGCCCCGGTTGCTAC-CTTTTGCTGTCATGTATACAGATAACAACAT--TT-ATAAACGG-TGTGACCC--AATTTCATCGGAGGTAAAATC-ATC-ATT------ATATTGACTCATTCCAATATCATTTCATCTATAACCTACAGTA----TATACTAAATA-T-CAGAGTATCTTTTAAACGTTTTACCCC-AAACATATTAAATAATACCCTAAGTCCAATGAA-TCCAT-TAT-----CAAGTAAATAAAATTGGAAAAATGA--TATTAA--ACCTATATAAA--A--gaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|4 : GTATGTGTGT----GCAGGGAGGGG-GAAGGAATC-T--CTGTAAAATTTAAAAACTAAAAACATCAACTTCTG----CATTCTACATTCTAGTAA-T-TTTTTAGGATACA-AGAAACTTCATCGGAATTCATATCTAGT-ACC-TCT-CATGCACTGAA-AGTCTAT-AA-A--A---------CACCCAGCATCT--TTAA
gi|4 : tatctatctctATGAAATGAA-A--CAAT-GT-A--A-----CTTGCACACAAC-TCTGATTAACATCTCATT------G------TATG-ATA----ACCTGTCAAAACATTCCAGTAATGAATG---G-TTAT-CTG-AA-----------------GTTAATTTTACT----CAA---------TTCGCTGCTGCCAGGAATAATTAGGAATAATCTACACTGTCAA-GTGTATATGTTT-------CTTGCAGCTGCACC-GTTAATATACAAGTTTTAATCAACATATGTGTGAGGACAATGCGTATATATATTGACCCCGCTC----------ACATTGCCCAACC----------TG-AACATTGCGGGAAGGGG-TCGTCCCGGCCCGGCTTATACGCC-TTGCTTTCATGTGTAC---TAATAACaacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|6 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttga-TGTGACCC--AATTTCGTTGGAGGTAAA--TCATC-ATG------TTAATGACTCATTCTAATATCATTTCAACTATAACCAA---------TATACTAAATA-T-TAGAGTATTTTTTGAACGTTTTTCCCC-AAA-ATATAAAATAATACCCTAAAACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGTAACGA--TATCCA--ACCTATATAAA--AATATAGATTCACCCTTCATTAA--TATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACG-ACTCCATAAGGGAAGGGGATTAATTTCTAC-----CAGTCGT-GTATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACCtcgttttgattaa
gi|7 : TATTTTAAACACCAGTTTATG----CATTCTAAGTTCTAGTAA-G-TGTTTAAGATAAA-ACAAGCTCCTTATGGATTCAAATCGGGT-A-CCTCT-TATGCACTGAA-AATCCAT-TA-A--AA----CCTGCACACAAC-TCTTATTAACATC---TT------A-A--TGTATAGATA---TACC-ATCAA----TT----TTA--AATA--TG------CTATAA-----------------A--CATTCtttttcatcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
gi|7 : AA---------T-CGCTGCCGCCAAGAAAAATAAG------TGTGCCGTATACA-GTGT-----TTTAAGCAA-CTAGCAGCTACACC-GT---TATTT---TTTTTATCAAAATGCATGTTGGGACAGAG----TATATGCTGACCCGGCTCACATCACCAAAC----------C----------TGAA-CATTGCGGTAGGGGT-TCATCCCGCACCGGCTGCTACaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|8 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT-------GTTGCGGGAA-G---------------TACAATTGTAATATCTAAAACACCATTTTCTG----CAGGTTACGTTCTAGTAA-G-TGTTTAGGATAAA-ACAAGCCTCTTAGGGATTCAAATCGGGT-A-CCTCT-TTTGTACTGAA-AATCCAT-AA-A--AA----CTTTCACACAAC-TCTGATTAACAGCTCATTGTACGAG-ATATGTATAGGTA---TACC-CTTAA----TT----TAA--CATG--TA-TTACACTGTGATAAC-------------ATTCA
gi|9 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtTTTGGCGGGAAAATAGCAAGACATG-TCCATAAAGGAAAGGGATTCATTTCAAC-----CAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAaggtaatgaatggttgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA
Alignments
lowQualScore : 1 11 11 22222 3333333333 2222 222 5555555555555555555555555555555555555555555555555555555555 1 1 11 333333 111 3333333333333 1111 1 222222222 111111 222222222222 8888888888888888888888888888888 111 11111 1111 1111 1111 22222222 1 2 222222 1 2222 1 11111111111 1111 22222 6666666666666666666666 111 1 11 1111 2222222 4444444444444 111 111111 222222222 111111 111 22222 22222 1 1
lowQualScore : 1 1 1 5 1 88 1 88 1 1 1 1 1 55555 9999999999 3333 1 1 000 1 8888888888888888888888888888888888888888888888888888888888 5 1 1 5 88 444444 4 777 6 6 1 7777777777777 5 1 2222 22 1 0 5 5 0 1 5 5 3 5 4 3 1 111111111 222222 4 777 44 222222222222 1111111111111111111111111111111 888 0 555 88888 0000 2222 77 22 3333 0 33333333 2 3 0 0 1 1 888888 4 1 0 0000 0 99999999999 3 0 7777 5 00000 3333333333333333333333 1 8 3 0 0 1 444 0 1 8 11 6666 6 1 2222222 7 1 2222222222222 111 6 6 9 1 3 777777 5 6 3 000000000 3 888 99 99 000000 666 1 6 66 0 3 3 5 1 888 0 0 00000 3 5 8 0 44444 3 3
lowQualScore : . . . . . .. . .. . . . . . ..... .......... .... . . ... . .......................................................... . . . . .. ...... . ... . . . ............. . . .... .. . . . . . . . . . . . . . ......... ...... . ... .. ............ ............................... ... . ... ..... .... .... .. .. .... . ........ . . . . . . ...... . . . .... . ........... . . .... . ..... ...................... . . . . . . ... . . . .. .... . . ....... . . ............. ... . . . . . ...... . . . ......... . ... .. .. ...... ... . . .. . . . . . ... . . ..... . . . . ..... . .
lowQualScore : 0 0 0 5 0 55 0 55 0 0 0 0 0 00000 5555555555 5555 0 0 555 0 0000000000000000000000000000000000000000000000000000000000 0 0 0 5 55 555555 2 555 7 7 0 5555555555555 7 0 1111 22 4 4 0 0 8 0 0 0 2 0 0 0 0 000000000 888888 4 888 66 888888888888 5555555555555555555555555555555 888 2 666 88888 6666 1111 99 11 1111 1 88888888 0 7 0 2 0 0 888888 2 0 0 0000 0 55555555555 2 2 0000 0 00000 6666666666666666666666 0 0 2 8 8 4 000 0 2 0 00 5555 7 0 7777777 8 0 3333333333333 777 7 7 3 0 7 888888 2 7 3 222222222 5 000 22 22 111111 666 4 0 22 8 5 5 0 4 000 8 6 00000 2 0 2 7 00000 3 3
consensus : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGT-ACCTCT-TATGCACTGAA-AGTCNATAAA--A-A----CTTGCAC------ACAAC-TC---TG-ATTA------------ACATCTC--ATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNAATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTT-A-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGC-----TCAC------C------AA--CCTG-AACATTGCGGNAGGGGG-TCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAAC---ATTTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A------TA---TACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAA--A--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( family-758 ) : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATTTAAAA-CACCANTTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGT-A-CTCT-TATGCACTGAA-AGTCNATAAA--A-A----CTTGCAC------ACAAC-TC---TG-ATTA------------ACATCTC--ATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTCAAT-CGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTT-A-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGC-----TCAC------C------AA--C-TG-AACATTGCGGNAGGGGG-TCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAAC---ATTTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTAAA--A------TA---TACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAA--A--ATGGACTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
gi|1 : ACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGT-TTGGTGGTGGTGGG---GGTGGAGGA-TCC--C-GTAAAATAGTAATATTTAAAA-CACCAATTTCTG----CATTCAACGTTC----A-AGT-----------A-ACAAGTTTCTTAAGGAG-CAAATTTGGTCA-CTCT-TATGCACTGAA-AGTCAATAAA--A-ATATACTTGCAC------ATAAC-TC---TG-ATTA------------ACATCTC--ATT------GC---------------AT-TGT---ATGGATA---TACC----ATCAA----TT----TAA--AATATGTTGC--ACTGTAA----ACG-CATTCCACTTAAT-CACAAGCGGCAGGAATAATTAG------TGTGCCACGTACATGTGTTTT-A--TATCTTGCAGCTACACT-GT-AACACGT---TTCCAATCAAAATATATATTTGGTCAACG----TTTATGCTGATCCCGC-----TCAC-----------------C-T----CACTGTAGGAGGGGG-TCATTCCACCTCGGTTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTG-TTAACGG-TGTGGCCCCTAATTTCATTGAACCTAAA--TATTC-AATATA------ATGATTCATTCTAATATTATTTCAAATATAACCT-----A------TA---TACTAAATA-T-CAGGATATATTTTAAATGTATGAT---------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT-TAC-----CAAGTAAATACAATTGGAGGTATGG--TATCCA--ACCTATACAAAACA--ATGGATT----CTCCATT-ATATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACA-AGTTCATAAAGGAAGAGGATTCATTTCCAC-----CAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACA
gi|10 : ttcTACACATTTGCTTTCGTGTGTACAGAAAATAAC---ATTTA-TAGATGAATGTGATCT--GATTTCATTGTAGGTAAA--TCAAC-ATTGCA----------CTCATTCCAATAT---TTTGCCTATAACATGAA--AGAACAGTA---TATTAGATA-TTCAGG--------TAAA--TTTTACCCCTAA-A-GATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGA--AACGAGCTCTCCACCATCTGCACAAA--A---TGAAACTGCCTCTCATTAATATT-------------GGCAGTTTGAC-------TAGCTAGACA-A-TCTATAATGAAAGGGAA--AATATTCACATCAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACcact
gi|11 : GTGT-T----GGTGGTGTGTGTGG-GGGAGC-TCC---------AT--CAAT-TTTAAAA-CACAAATTTCTT----TATTCTTTGTTCAAGTA-GATGCTTAGAATAAA-ACAAGTCTTTTAAGCATTCAAATCAGGT-A-TTTTGTATGCACTGAC-AATCCATAAAAGA-A----CTTGCAC------ACTAC-TC---TA-GTTA------------ACATCTC---T-------------------------T-TGT---GAGAATG---TACC----ATCAT----TT----TGA--AATATGTTAC--ACCGTAA----
gi|12 : ggtgtgtggTTATACATTCTA-TAGAGCGTTTTGTATAAACACACGCTTCATTGGCATTTATAACTGGT-A-TT---TATGCACAGAA-AGTCAATAAA--ACA----CCCACCCTCTTTTAAAAC-TTAAGTGAATTAACAAAATTGCATACATCTCTGATT------AACATCAC---------AT-TGT---ATGGATA---TCCT----GTCAA----gaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|14 : tgaatatattgatcaccccACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtact-GGAGGA-TCCGCC-TTAAAAT-GTGATATCTAAAA-CATTAACTACTA----CA--CTA-----TAGTC-AGCGTTAAGGATAAA-A-AAGTTTCATAGGGATTCAAATATGGT-A-C-CT-CATGCATCGAA-AGTCAATAatt
gi|16 : TGAACAATTTGTAAA----------TTGCCC------ACGAC-TA---TG-AATA------------AAATCTC--A--------------------------T-TGT---ATGGATATAGTACC----ATAAA----TT----CAA--AATGTGTGAT--CCTGTCA----Accccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|17 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaaA--CGATCGATTTTACAAATAATGTCTTCTTCCAAC-----TTTATTTAGAACCGAAA--A------CAGCATTTTAAATAGT-CAGG-CATCTTTTTAATATTTTATCCC-----------AATAATGCCATTAGATCAAA------------------TAAACAAACCAAA-TGAAAACAGGA--TGTCCA--TCCTATGCAAA--A--ATGGAACCGTTTCTCATTTATATaaatatt
gi|2 : acaaaaaatacatagttatgggtGGACAACG----CATATACTGTCCGCGC-----TCAC------C------AA--A-TCCAACATTGTTGAAAGGGG-TCATCC-ACCACGTCTGCTACGGCTTTACTTTCACGTGTACAGAAAATAAC---ATTTAATGAACGG-TGTGACCA--AACTTCATCGGAAGTAAA--CGATC-ATTTTA------ATGACTCGTTCTAATATTATATCATTTGTAACCTA-----------TA---TACTACATA-T-CCGTGTATCTTCCAAACGTTTTACCCCAAA-AATATTAAATGAAACACTAGGACTAAAAAA-TTCAT-AAC-----TAAGTAAATGAGATTGGAGTTACGG--TATTCC--ACCTATATAAA--A--ATGGACTCGCTCTTCATTAGCATGTCTTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATG-A-TCCATAAAGAAAGGGGATTAATTTCCAT-----CAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAA-AATGA-AAA
gi|3 : G-GGGGTA-TTC--T-ATA-----GTAATATTTAAAA-CACCATTTTATATATACACACTACGTTCTAGAA-AGTGTTTAGGATAAA-ACAAACTTCTTAGGGATTTAAATTGGAT-A-C-CT-T------TGAA-AATCCATAAA--A-A----CTTGCAC------ACATA-TC---TG-ATCA------------ATATCTC--ATT------GTATAGATATACAATTAAT-TATGTAATGAATGAT-TATCTGAAATTCA----TT----CAA--AAACAGTTATTTACTGCAAT---ATTACAAGC-ACTGGATTCGCTGTCGCCAGGAAAAAGAAA------AGTGCCATGTTCA-GTGTTTT-ATGCATCTTTCAGCTACACCAGT-AAT-CTT---TTCTA-TCAAAATACATGTTGGGACAACA----TATATGCTGATCC-GC-----TCAC------CCAACCAAA--CCTG-AACATTGTGGTAGGGGGGTCATACCGCCCCGGTTGCTAC-CTTTTGCTGTCATGTATACAGATAACAAC---ATTTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAAATC-ATC-ATTATA------TTGACTCATTCCAATATCATTTCATCTATAACCTACAGTA------TA---TACTAAATA-T-CAGAGTATCTTTTAAACGTTTTACCCCAAACA-TATTAAATAATACCCTAAGTCCAATGAA-TCCAT-TAT-----CAAGTAAATAAAATTGGAAAAATGA--TATTAA--ACCTATATAAA--A--gaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|4 : GTATGTGTGT----GCAGGGAGG---GG-GAAGGAATCT--CTGTAAAAT-TTAAAAACTAAAAACATCAACTTCTG----CATTCTACATTCTAGTA-ATTTTTTAGGATACA-AGAAACTTCATCGGAATTCATATCTAGT-ACCTCT-CATGCACTGAA-AGTCTATAAA--A----------CAC------CCAGCATC---T---TTA------------A
gi|4 : tatctatctctATGAAATGAA-A--CAATGTA--A------CTTGCAC------ACAAC-TC---TG-ATTA------------ACATCTC--ATT------G---------------------T---ATG-ATA----ACCT---GTCAAAACATTCCAGTAATGAATG-GTTAT---CTG-AA----GTT-AATTTTACTCAATTCGCTGCTGCCAGGAATAATTAGGAATAATCTACACTGTCAA-GTGTATA-T-GTTTCTTGCAGCTGCACC-GTTAATATACAAGTTTTAATCAACATATGTGTGAGGACAATGCGTATATATATTGACCCCGC-----TCACATTGCCC------AA--CCTG-AACATTGCGGGAAGGGG-TCGTCCCGGCCCGGCTTATACGCC-TTGCTTTCATGTGTAC---TAATAAC---aacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|6 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttga-TGTGACCC--AATTTCGTTGGAGGTAAA--TCATC-ATGTTA------ATGACTCATTCTAATATCATTTCAACTATAACC---A--A------TA---TACTAAATA-T-TAGAGTATTTTTTGAACGTTTTTCCCCAAA-A-TATAAAATAATACCCTAAAACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGTAACGA--TATCCA--ACCTATATAAA--AATATAGATTCACCCTTCATTAATATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACG-ACTCCATAAGGGAAGGGGATTAATTTCTAC-----CAGTCGT-GTATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACCtcgttttgattaa
gi|7 : TATTTTAAA-CACCAGTTTATG----CATTCTAAGTTCTAGTA-AGTGTTTAAGATAAA-ACAAGCTCCTTATGGATTCAAATCGGGT-ACCTCT-TATGCACTGAA-AATCCATTAA--A-A----CCTGCAC------ACAAC-TC---TT-ATTA------------ACATC-----TT------A----------------A--TGT---ATAGATA---TACC----ATCAA----TT----TTA--AATATG-------CTATAA----A---CATTCtttttcatcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
gi|7 : AAT-CGCTGCCGCCAAGAAAAATAAG------TGTGCCGTATACA-GTGTTTTAA-GCAACTAGCAGCTACACC-GT---TATTT---TTTTTATCAAAATGCATGTTGGGACAGAG----TATATGCTGACCCGGCTCACATCAC------C------AAACC-TG-AACATTGCGGTAGGGGT-TCATCCCGCACCGGCTGCTACaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|8 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT-------GTTGCGGG---AA-GTACAA-T------------T-GTAATATCTAAAA-CACCATTTTCTG----CAGGTTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCCTCTTAGGGATTCAAATCGGGT-ACCTCT-TTTGTACTGAA-AATCCATAAA--A-A----CTTTCAC------ACAAC-TC---TG-ATTA------------ACAGCTC--ATTGTACGAG----------------ATATGT---ATAGGTA---TACC----CTTAA----TT----TAA--CATGTATTAC--ACTGTGATAACATT-CA
gi|9 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtTTTGGCGGGAAAATAGCAAGACATG-TCCATAAAGGAAAGGGATTCATTTCAAC-----CAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAaggtaatgaatggttgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA
Alignments
lowQualScore : 1 11 11 22222 3333333333 2222 222 5555555555555555555555555555555555555555555555555555555555 1 1 11 333333 111 3333333333333 1111 11111111 77777777777777777777777777777 111 11111 1111 1111 1111 22222222 222222 1 22 1 11111111111 1111 77777777777777777 111 1 11 1111 2222222 55555555555555 111111 222222222 111 111 22222 22222 1 1
lowQualScore : 1 1 1 5 1 88 1 88 1 1 1 1 1 55555 9999999999 3333 1 1 000 1 8888888888888888888888888888888888888888888888888888888888 5 1 1 5 88 444444 4 777 6 6 1 7777777777777 5 0 2222 22 1 0 5 5 0 1 22 3 1 1 3 4 55555555 4 0 0 11111111111111111111111111111 888 0 555 88888 0000 2222 77 22 3333 0 33333333 6 1 3 0 1 1 888888 4 1 0 22 0 99999999999 3 0 7777 5 11111111111111111 55 1 8 3 0 0 1 777 0 1 8 11 6666 6 1 2222222 7 1 88888888888888 6 6 9 1 3 777777 5 6 3 000000000 3 888 99 99 999 1 4444 3 66 0 3 3 5 1 888 0 0 00000 3 5 8 0 44444 3 3
lowQualScore : . . . . . .. . .. . . . . . ..... .......... .... . . ... . .......................................................... . . . . .. ...... . ... . . . ............. . . .... .. . . . . . . .. . . . . . ........ . . . ............................. ... . ... ..... .... .... .. .. .... . ........ . . . . . . ...... . . . .. . ........... . . .... . ................. .. . . . . . . ... . . . .. .... . . ....... . . .............. . . . . . ...... . . . ......... . ... .. .. ... . .... . .. . . . . . ... . . ..... . . . . ..... . .
lowQualScore : 0 0 0 5 0 55 0 55 0 0 0 0 0 00000 5555555555 5555 0 0 555 0 0000000000000000000000000000000000000000000000000000000000 0 0 0 5 55 555555 2 555 7 7 0 5555555555555 7 6 1111 22 4 4 0 0 8 0 11 6 8 0 6 0 44444444 4 1 4 66666666666666666666666666666 888 2 666 88888 6666 1111 99 11 1111 1 88888888 5 0 2 2 0 0 888888 2 0 0 55 0 55555555555 2 2 0000 0 66666666666666666 88 0 0 2 8 8 4 555 0 2 0 00 5555 7 0 7777777 8 0 77777777777777 7 7 3 0 7 888888 2 7 3 222222222 5 000 22 22 111 0 2222 8 22 8 5 5 0 4 000 8 6 00000 2 0 2 7 00000 3 3
consensus : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCACAT--C-C------AAA-CCTGAACATTGCGGNAGGGGG-TCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( family-758 ) : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNAATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCAC------C------AA--CCTGAACATTGCGGNAGGGGG-TCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
gi|1 : ACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGT-TTGGTGGTGGTGGG---GGTGGAGGA-TCC--C-GTAAAATAGTAATATTTAAAA-CACCAATTTCTG----CATTCAACGTTC----A-AGT-----------A-ACAAGTTTCTTAAGGAG-CAAATTTGGTCACTCTTATGCACTGAA-AGTCAAT-AA-A--AATATACTTGCACATAAC-TCTGATTAACATCTCATT------GC---------------AT-TGT---ATGGATA---TACC----ATCAA----TT----TAA--AATATGTTGC--ACTGTAA----ACG-CATTCCACTTAAT-CACAAGCGGCAGGAATAATTAG------TGTGCCACGTACATGTGTTTTA--TATCTTGCAGCTACACT-GT-AACACGT---TTCCAATCAAAATATATATTTGGTCAACG----TTTATGCTGATCCCGCTCAC------C------------T---CACTGTAGGAGGGGG-TCATTCCACCTCGGTTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTG-TTAACGG-TGTGGCCCCTAATTTCATTGAACCTAAA--TATTC-AATATA------ATGATTCATTCTAATATTATTTCAAATATAACCTA------------TATACTAAATA-T-CAGGATATATTTTAAATGTATGAT---------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT-TAC-----CAAGTAAATACAATTGGAGGTATGG--TATCCA--ACCTATACAAAACAATGGATTC----TCCATTA-TATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACA-AGTTCATAAAGGAAGAGGATTCATTTCCAC-----CAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACA
gi|10 : ttcTACACATTTGCTTTCGTGTGTACAGAAAATAACAT---TTA-TAGATGAATGTGATCT--GATTTCATTGTAGGTAAA--TCAAC-ATTGCA----------CTCATTCCAATAT---TTTGCCTATAACATG-A--AAGAACAGTATATTAGATA-TTCAGG--------TAAA--TTTTACCCCTAA-A-GATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGA--AACGAGCTCTCCACCATCTGCACAAAA---TGAAACTGCCTCTCATTAATATT-------------GGCAGTTTGAC-------TAGCTAGACA-A-TCTATAATGAAAGGGAA--AATATTCACATCAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACcact
gi|11 : GTGT-T----GGTGGTGTGTGTGG-GGGAGC-TCC---------AT--CAAT-TTTAAAA-CACAAATTTCTT----TATTCTTTGTTCAAGTA-GATGCTTAGAATAAA-ACAAGTCTTTTAAGCATTCAAATCAGGTATTTTGTATGCACTGAC-AATCCAT-AA-AAGAA----CTTGCACACTAC-TCTAGTTAACATCTC-T-------------------------T-TGT---GAGAATG---TACC----ATCAT----TT----TGA--AATATGTTAC--ACCGTAA----
gi|12 : ggtgtgtggTTATACATTCTA-TAGAGCGTTTTGTATAAACACACGCTTCATTGGCATTTATAACTGGTAT---TTATGCACAGAA-AGTCAAT-AA-A--Agaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|12 : tgaatatattgatcaccccA-AGTGAATTAACA--AA----ATTGCATACATC-TCTGATTAACATCAC--------------------------AT-TGT---ATGGATA---TCCT----GTCAA----cacccaccctcttttaaaacttaagtgaattaacaaaattgcatacatctctgattaacatcacattgtatggatatcctgtcaaaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|14 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatttatgcacagaaagtcaataaaacacccaccctcttttaaaacttACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtact-GGAGGA-TCCGCC-TTAAAAT-GTGATATCTAAAA-CATTAACTACTA----CA--CTA-----TAGTC-AGCGTTAAGGATAAA-A-AAGTTTCATAGGGATTCAAATATGGTACCTC--ATGCATCGAA-AGTCAAT-Aatt
gi|16 : TGAACAATTTGT-AA-A---------TTGCCCACGAC-TATGAATAAAATCTCA--------------------------T-TGT---ATGGATATAGTACC----ATAAA----TT----CAA--AATGTGTGAT--CCTGTCA----Accccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|17 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaaA--CGATCGATTTTACAAATAATGTCTTCTTCCAAC-----TTTATTTAGAACCGA-A--AACAG---CATTTTAAATAGT-CAGG-CATCTTTTTAATATTTTATCCC-----------AATAATGCCATTAGATCAAA------------------TAAACAAACCAAA-TGAAAACAGGA--TGTCCA--TCCTATGCAAAA--ATGGAACCGTTTCTCATTTATATaaatatt
gi|2 : acaaaaaatacatagttatgggtGGACAACG----CATATACTGTCCGCGCTCAC------C------AAATCC--AACATTGTTGAAAGGGG-TCATCC-ACCACGTCTGCTACGGCTTTACTTTCACGTGTACAGAAAATAACAT---TTAATGAACGG-TGTGACCA--AACTTCATCGGAAGTAAA--CGATC-ATTTTA------ATGACTCGTTCTAATATTATATCATTTGTAACCTA------------TATACTACATA-T-CCGTGTATCTTCCAAACGTTTTACCCCAAA-AATATTAAATGAAACACTAGGACTAAAAAA-TTCAT-AAC-----TAAGTAAATGAGATTGGAGTTACGG--TATTCC--ACCTATATAAAA--ATGGACTCGCTCTTCATTAGCATGTCTTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATG-A-TCCATAAAGAAAGGGGATTAATTTCCAT-----CAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAA-AATGA-AAA
gi|3 : G-GGGGTA-TTC--T-ATA-----GTAATATTTAAAA-CACCATTTTATATATACACACTACGTTCTAGAA-AGTGTTTAGGATAAA-ACAAACTTCTTAGGGATTTAAATTGGATACCTTT--------GAA-AATCCAT-AA-A--AA----CTTGCACACATA-TCTGATCAATATCTCATT------GTATAGATATACAATTAAT-TATGTAATGAATGAT-TATCTGAAATTCA----TT----CAA--AAACAGTTATTTACTGCAAT---ATTACAAGC-ACTGGATTCGCTGTCGCCAGGAAAAAGAAA------AGTGCCATGTTCA-GTGTTTTATGCATCTTTCAGCTACACCAGT-AAT-CTT---TTCTA-TCAAAATACATGTTGGGACAACA----TATATGCTGATCC-GCTCAC------CCAACCAAA--CCTGAACATTGTGGTAGGGGGGTCATACCGCCCCGGTTGCTAC-CTTTTGCTGTCATGTATACAGATAACAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAAATC-ATC-ATTATA------TTGACTCATTCCAATATCATTTCATCTATAACCTACAGTA-------TATACTAAATA-T-CAGAGTATCTTTTAAACGTTTTACCCCAAACA-TATTAAATAATACCCTAAGTCCAATGAA-TCCAT-TAT-----CAAGTAAATAAAATTGGAAAAATGA--TATTAA--ACCTATATAAAA--gaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|4 : GTATGTGTGT----GCAGGGAGG---GG-GAAGGAATCT--CTGTAAAAT-TTAAAAACTAAAAACATCAACTTCTG----CATTCTACATTCTAGTA-ATTTTTTAGGATACA-AGAAACTTCATCGGAATTCATATCTAGTACCTCTCATGCACTGAA-AGTCTAT-AA-A--A---------CACCCAGCATCT--TTAA
gi|4 : tatctatctctATGAAATGAA-A--CAAT-GT-A--A-----CTTGCACACAAC-TCTGATTAACATCTCATT------G---------------------T---ATG-ATA----ACCT---GTCAAAACATTCCAGTAATGAATG-GTTAT---CTG-AA----GTT-AATTTTACTCAATTCGCTGCTGCCAGGAATAATTAGGAATAATCTACACTGTCAA-GTGTATAT-GTTTCTTGCAGCTGCACC-GTTAATATACAAGTTTTAATCAACATATGTGTGAGGACAATGCGTATATATATTGACCCCGCTCACATTGCCC------AA--CCTGAACATTGCGGGAAGGGG-TCGTCCCGGCCCGGCTTATACGCC-TTGCTTTCATGTGTAC---TAATAACaacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|6 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttga-TGTGACCC--AATTTCGTTGGAGGTAAA--TCATC-ATGTTA------ATGACTCATTCTAATATCATTTCAACTATAACC---A--A-------TATACTAAATA-T-TAGAGTATTTTTTGAACGTTTTTCCCCAAA-A-TATAAAATAATACCCTAAAACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGTAACGA--TATCCA--ACCTATATAAAAATATAGATTCACCCTTCATTAATATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACG-ACTCCATAAGGGAAGGGGATTAATTTCTAC-----CAGTCGT-GTATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACCtcgttttgattaa
gi|7 : TATTTTAAA-CACCAGTTTATG----CATTCTAAGTTCTAGTA-AGTGTTTAAGATAAA-ACAAGCTCCTTATGGATTCAAATCGGGTACCTCTTATGCACTGAA-AATCCAT-TA-A--AA----CCTGCACACAAC-TCTTATTAACATC---TT------A----------------A--TGT---ATAGATA---TACC----ATCAA----TT----TTA--AATATG-------CTATAA----A---CATTCtttttcatcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
gi|7 : CACTGGAATCGCTGCCGCCAAGAAAAATAAG------TGTGCCGTATACA-GTGTTTTAAGCAACTAGCAGCTACACC-GT---TATTT---TTTTTATCAAAATGCATGTTGGGACAGAG----TATATGCTGACCCGGCTCACATCAC-C------AAA-CCTGAACATTGCGGTAGGGGT-TCATCCCGCACCGGCTGCTACaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|8 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaaTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT-------GTTGCGGG---AA-GTACAA-T------------T-GTAATATCTAAAA-CACCATTTTCTG----CAGGTTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCCTCTTAGGGATTCAAATCGGGTACCTCTTTTGTACTGAA-AATCCAT-AA-A--AA----CTTTCACACAAC-TCTGATTAACAGCTCATTGTACGAG----------------ATATGT---ATAGGTA---TACC----CTTAA----TT----TAA--CATGTATTAC--ACTGTGATAACATT-CA
gi|9 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtTTTGGCGGGAAAATAGCAAGACATG-TCCATAAAGGAAAGGGATTCATTTCAAC-----CAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAaggtaatgaatggttgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA
Alignments
lowQualScore : 1 11 11 22222 3333333333 2222 222 5555555555555555555555555555555555555555555555555555555555 1 1 11 333333 111 3333333333333 1111 11111111 77777777777777777777777777777 111 11111 1111 1111 1111 22222222 222222 1 22 1 11111111111 1111 444444 1 111 1 11 1111 2222222 55555555555555 111111 222222222 111 111 22222 22222 1 1
lowQualScore : 1 1 1 5 1 88 1 88 1 1 1 1 1 55555 9999999999 3333 1 1 000 1 8888888888888888888888888888888888888888888888888888888888 5 1 1 5 88 444444 4 777 6 6 1 7777777777777 5 0 2222 22 1 0 5 5 0 1 22 3 1 1 3 4 55555555 4 0 0 11111111111111111111111111111 888 0 555 88888 0000 2222 77 22 3333 0 33333333 6 1 3 0 1 1 888888 4 1 0 22 0 99999999999 3 0 7777 5 999999 0 0 1 8 3 0 0 1 777 0 1 8 11 6666 6 1 2222222 7 1 88888888888888 6 6 9 1 3 777777 5 6 3 000000000 3 888 99 99 999 1 4444 3 66 0 3 3 5 1 888 0 0 00000 3 5 8 0 44444 3 3
lowQualScore : . . . . . .. . .. . . . . . ..... .......... .... . . ... . .......................................................... . . . . .. ...... . ... . . . ............. . . .... .. . . . . . . .. . . . . . ........ . . . ............................. ... . ... ..... .... .... .. .. .... . ........ . . . . . . ...... . . . .. . ........... . . .... . ...... . . . . . . . . ... . . . .. .... . . ....... . . .............. . . . . . ...... . . . ......... . ... .. .. ... . .... . .. . . . . . ... . . ..... . . . . ..... . .
lowQualScore : 0 0 0 5 0 55 0 55 0 0 0 0 0 00000 5555555555 5555 0 0 555 0 0000000000000000000000000000000000000000000000000000000000 0 0 0 5 55 555555 2 555 7 7 0 5555555555555 7 6 1111 22 4 4 0 0 8 0 11 6 8 0 6 0 44444444 4 1 4 66666666666666666666666666666 888 2 666 88888 6666 1111 99 11 1111 1 88888888 5 0 2 2 0 0 888888 2 0 0 55 0 55555555555 2 2 0000 0 444444 6 0 0 0 2 8 8 4 555 0 2 0 00 5555 7 0 7777777 8 0 77777777777777 7 7 3 0 7 888888 2 7 3 222222222 5 000 22 22 111 0 2222 8 22 8 5 5 0 4 000 8 6 00000 2 0 2 7 00000 3 3
consensus : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCAC--AT--CCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( family-758 ) : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCAC--AT--CCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
gi|1 : ACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGT-TTGGTGGTGGTGGG---GGTGGAGGA-TCC--C-GTAAAATAGTAATATTTAAAA-CACCAATTTCTG----CATTCAACGTTC----A-AGT-----------A-ACAAGTTTCTTAAGGAG-CAAATTTGGTCACTCTTATGCACTGAA-AGTCAAT-AA-A--AATATACTTGCACATAAC-TCTGATTAACATCTCATT------GC---------------AT-TGT---ATGGATA---TACC----ATCAA----TT----TAA--AATATGTTGC--ACTGTAA----ACG-CATTCCACTTAAT-CACAAGCGGCAGGAATAATTAG------TGTGCCACGTACATGTGTTTTA--TATCTTGCAGCTACACT-GT-AACACGT---TTCCAATCAAAATATATATTTGGTCAACG----TTTATGCTGATCCCGCTCAC------------CT---CACTGTAGGA-GGGGGTCATTCCACCTCGGTTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTG-TTAACGG-TGTGGCCCCTAATTTCATTGAACCTAAA--TATTC-AATATA------ATGATTCATTCTAATATTATTTCAAATATAACCTA------------TATACTAAATA-T-CAGGATATATTTTAAATGTATGAT---------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT-TAC-----CAAGTAAATACAATTGGAGGTATGG--TATCCA--ACCTATACAAAACAATGGATTC----TCCATTA-TATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACA-AGTTCATAAAGGAAGAGGATTCATTTCCAC-----CAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACA
gi|10 : ttcTACACATTTGCTTTCGTGTGTACAGAAAATAACAT---TTA-TAGATGAATGTGATCT--GATTTCATTGTAGGTAAA--TCAAC-ATTGCA----------CTCATTCCAATAT---TTTGCCTATAACATG-A--AAGAACAGTATATTAGATA-TTCAGG--------TAAA--TTTTACCCCTAA-A-GATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGA--AACGAGCTCTCCACCATCTGCACAAAA---TGAAACTGCCTCTCATTAATATT-------------GGCAGTTTGAC-------TAGCTAGACA-A-TCTATAATGAAAGGGAA--AATATTCACATCAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACcact
gi|11 : GTGT-T----GGTGGTGTGTGTGG-GGGAGC-TCC---------AT--CAAT-TTTAAAA-CACAAATTTCTT----TATTCTTTGTTCAAGTA-GATGCTTAGAATAAA-ACAAGTCTTTTAAGCATTCAAATCAGGTATTTTGTATGCACTGAC-AATCCAT-AA-AAGAA----CTTGCACACTAC-TCTAGTTAACATCTC-T-------------------------T-TGT---GAGAATG---TACC----ATCAT----TT----TGA--AATATGTTAC--ACCGTAA----
gi|12 : ggtgtgtggTTATACATTCTA-TAGAGCGTTTTGTATAAACACACGCTTCATTGGCATTTATAACTGGTAT---TTATGCACAGAA-AGTCAAT-AA-A--Agaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|12 : tgaatatattgatcaccccA-AGTGAATTAACA--AA----ATTGCATACATC-TCTGATTAACATCAC--------------------------AT-TGT---ATGGATA---TCCT----GTCAA----cacccaccctcttttaaaacttaagtgaattaacaaaattgcatacatctctgattaacatcacattgtatggatatcctgtcaaaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|14 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatttatgcacagaaagtcaataaaacacccaccctcttttaaaacttACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtact-GGAGGA-TCCGCC-TTAAAAT-GTGATATCTAAAA-CATTAACTACTA----CA--CTA-----TAGTC-AGCGTTAAGGATAAA-A-AAGTTTCATAGGGATTCAAATATGGTACCTC--ATGCATCGAA-AGTCAAT-Aatt
gi|16 : TGAACAATTTGT-AA-A---------TTGCCCACGAC-TATGAATAAAATCTCA--------------------------T-TGT---ATGGATATAGTACC----ATAAA----TT----CAA--AATGTGTGAT--CCTGTCA----Accccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|17 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaaA--CGATCGATTTTACAAATAATGTCTTCTTCCAAC-----TTTATTTAGAACCGA-A--AACAG---CATTTTAAATAGT-CAGG-CATCTTTTTAATATTTTATCCC-----------AATAATGCCATTAGATCAAA------------------TAAACAAACCAAA-TGAAAACAGGA--TGTCCA--TCCTATGCAAAA--ATGGAACCGTTTCTCATTTATATaaatatt
gi|2 : acaaaaaatacatagttatgggtGGACAACG----CATATACTGTCCGCGCTCAC-------CAAATCC-AACATTGTTGAA-AGGGGTCATCC-ACCACGTCTGCTACGGCTTTACTTTCACGTGTACAGAAAATAACAT---TTAATGAACGG-TGTGACCA--AACTTCATCGGAAGTAAA--CGATC-ATTTTA------ATGACTCGTTCTAATATTATATCATTTGTAACCTA------------TATACTACATA-T-CCGTGTATCTTCCAAACGTTTTACCCCAAA-AATATTAAATGAAACACTAGGACTAAAAAA-TTCAT-AAC-----TAAGTAAATGAGATTGGAGTTACGG--TATTCC--ACCTATATAAAA--ATGGACTCGCTCTTCATTAGCATGTCTTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATG-A-TCCATAAAGAAAGGGGATTAATTTCCAT-----CAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAA-AATGA-AAA
gi|3 : G-GGGGTA-TTC--T-ATA-----GTAATATTTAAAA-CACCATTTTATATATACACACTACGTTCTAGAA-AGTGTTTAGGATAAA-ACAAACTTCTTAGGGATTTAAATTGGATACCTTT--------GAA-AATCCAT-AA-A--AA----CTTGCACACATA-TCTGATCAATATCTCATT------GTATAGATATACAATTAAT-TATGTAATGAATGAT-TATCTGAAATTCA----TT----CAA--AAACAGTTATTTACTGCAAT---ATTACAAGC-ACTGGATTCGCTGTCGCCAGGAAAAAGAAA------AGTGCCATGTTCA-GTGTTTTATGCATCTTTCAGCTACACCAGT-AAT-CTT---TTCTA-TCAAAATACATGTTGGGACAACA----TATATGCTGATCC-GCTCACCCAA--CCAAACCTGAACATTGTGGTAGGGGGGTCATACCGCCCCGGTTGCTAC-CTTTTGCTGTCATGTATACAGATAACAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAAATC-ATC-ATTATA------TTGACTCATTCCAATATCATTTCATCTATAACCTACAGTA-------TATACTAAATA-T-CAGAGTATCTTTTAAACGTTTTACCCCAAACA-TATTAAATAATACCCTAAGTCCAATGAA-TCCAT-TAT-----CAAGTAAATAAAATTGGAAAAATGA--TATTAA--ACCTATATAAAA--gaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|4 : GTATGTGTGT----GCAGGGAGG---GG-GAAGGAATCT--CTGTAAAAT-TTAAAAACTAAAAACATCAACTTCTG----CATTCTACATTCTAGTA-ATTTTTTAGGATACA-AGAAACTTCATCGGAATTCATATCTAGTACCTCTCATGCACTGAA-AGTCTAT-AA-A--A---------CACCCAGCATCT--TTAA
gi|4 : tatctatctctATGAAATGAA-A--CAAT-GT-A--A-----CTTGCACACAAC-TCTGATTAACATCTCATT------G---------------------T---ATG-ATA----ACCT---GTCAAAACATTCCAGTAATGAATG-GTTAT---CTG-AA----GTT-AATTTTACTCAATTCGCTGCTGCCAGGAATAATTAGGAATAATCTACACTGTCAA-GTGTATAT-GTTTCTTGCAGCTGCACC-GTTAATATACAAGTTTTAATCAACATATGTGTGAGGACAATGCGTATATATATTGACCCCGCTCAC--ATTGCCCAACCTGAACATTGCGGGA-AGGGGTCGTCCCGGCCCGGCTTATACGCC-TTGCTTTCATGTGTAC---TAATAACaacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|6 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttga-TGTGACCC--AATTTCGTTGGAGGTAAA--TCATC-ATGTTA------ATGACTCATTCTAATATCATTTCAACTATAACC---A--A-------TATACTAAATA-T-TAGAGTATTTTTTGAACGTTTTTCCCCAAA-A-TATAAAATAATACCCTAAAACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGTAACGA--TATCCA--ACCTATATAAAAATATAGATTCACCCTTCATTAATATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACG-ACTCCATAAGGGAAGGGGATTAATTTCTAC-----CAGTCGT-GTATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACCtcgttttgattaa
gi|7 : TATTTTAAA-CACCAGTTTATG----CATTCTAAGTTCTAGTA-AGTGTTTAAGATAAA-ACAAGCTCCTTATGGATTCAAATCGGGTACCTCTTATGCACTGAA-AATCCAT-TA-A--AA----CCTGCACACAAC-TCTTATTAACATC---TT------A----------------A--TGT---ATAGATA---TACC----ATCAA----TT----TTA--AATATG-------CTATAA----A---CATTCtttttcatcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
gi|7 : CACTGGAATCGCTGCCGCCAAGAAAAATAAG------TGTGCCGTATACA-GTGTTTTAAGCAACTAGCAGCTACACC-GT---TATTT---TTTTTATCAAAATGCATGTTGGGACAGAG----TATATGCTGACCCGGCTCAC--ATCACCAAACCTGAACATTGCGGTA-GGGGTTCATCCCGCACCGGCTGCTACaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|8 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaaTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT-------GTTGCGGG---AA-GTACAA-T------------T-GTAATATCTAAAA-CACCATTTTCTG----CAGGTTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCCTCTTAGGGATTCAAATCGGGTACCTCTTTTGTACTGAA-AATCCAT-AA-A--AA----CTTTCACACAAC-TCTGATTAACAGCTCATTGTACGAG----------------ATATGT---ATAGGTA---TACC----CTTAA----TT----TAA--CATGTATTAC--ACTGTGATAACATT-CA
gi|9 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtTTTGGCGGGAAAATAGCAAGACATG-TCCATAAAGGAAAGGGATTCATTTCAAC-----CAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAaggtaatgaatggttgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA
Alignments
lowQualScore : 1 11 11 22222 3333333333 2222 222 5555555555555555555555555555555555555555555555555555555555 1 1 11 333333 111 3333333333333 1111 11111111 77777777777777777777777777777 111 11111 1111 1111 1111 22222222 222222 1 22 1 11111111111 1111 444444 1 111 1 11 1111 2222222 55555555555555 111111 222222222 111 111 22222 22222 1 1
lowQualScore : 1 1 1 5 1 88 1 88 1 1 1 1 1 55555 9999999999 3333 1 1 000 1 8888888888888888888888888888888888888888888888888888888888 5 1 1 5 88 444444 4 777 6 6 1 7777777777777 5 0 2222 22 1 0 5 5 0 1 22 3 1 1 3 4 55555555 4 0 0 11111111111111111111111111111 888 0 555 88888 0000 2222 77 22 3333 0 33333333 6 1 3 0 1 1 888888 4 1 0 22 0 99999999999 3 0 7777 5 999999 0 0 1 8 3 0 0 1 777 0 1 8 11 6666 6 1 2222222 7 1 88888888888888 6 6 9 1 3 777777 5 6 3 000000000 3 888 99 99 999 1 4444 3 66 0 3 3 5 1 888 0 0 00000 3 5 8 0 44444 3 3
lowQualScore : . . . . . .. . .. . . . . . ..... .......... .... . . ... . .......................................................... . . . . .. ...... . ... . . . ............. . . .... .. . . . . . . .. . . . . . ........ . . . ............................. ... . ... ..... .... .... .. .. .... . ........ . . . . . . ...... . . . .. . ........... . . .... . ...... . . . . . . . . ... . . . .. .... . . ....... . . .............. . . . . . ...... . . . ......... . ... .. .. ... . .... . .. . . . . . ... . . ..... . . . . ..... . .
lowQualScore : 0 0 0 5 0 55 0 55 0 0 0 0 0 00000 5555555555 5555 0 0 555 0 0000000000000000000000000000000000000000000000000000000000 0 0 0 5 55 555555 2 555 7 7 0 5555555555555 7 6 1111 22 4 4 0 0 8 0 11 6 8 0 6 0 44444444 4 1 4 66666666666666666666666666666 888 2 666 88888 6666 1111 99 11 1111 1 88888888 5 0 2 2 0 0 888888 2 0 0 55 0 55555555555 2 2 0000 0 444444 6 0 0 0 2 8 8 4 555 0 2 0 00 5555 7 0 7777777 8 0 77777777777777 7 7 3 0 7 888888 2 7 3 222222222 5 000 22 22 111 0 2222 8 22 8 5 5 0 4 000 8 6 00000 2 0 2 7 00000 3 3
consensus : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCAC--AT--CCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( family-758 ) : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCAC--AT--CCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
gi|1 : ACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGT-TTGGTGGTGGTGGG---GGTGGAGGA-TCC--C-GTAAAATAGTAATATTTAAAA-CACCAATTTCTG----CATTCAACGTTC----A-AGT-----------A-ACAAGTTTCTTAAGGAG-CAAATTTGGTCACTCTTATGCACTGAA-AGTCAAT-AA-A--AATATACTTGCACATAAC-TCTGATTAACATCTCATT------GC---------------AT-TGT---ATGGATA---TACC----ATCAA----TT----TAA--AATATGTTGC--ACTGTAA----ACG-CATTCCACTTAAT-CACAAGCGGCAGGAATAATTAG------TGTGCCACGTACATGTGTTTTA--TATCTTGCAGCTACACT-GT-AACACGT---TTCCAATCAAAATATATATTTGGTCAACG----TTTATGCTGATCCCGCTCAC------------CT---CACTGTAGGA-GGGGGTCATTCCACCTCGGTTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTG-TTAACGG-TGTGGCCCCTAATTTCATTGAACCTAAA--TATTC-AATATA------ATGATTCATTCTAATATTATTTCAAATATAACCTA------------TATACTAAATA-T-CAGGATATATTTTAAATGTATGAT---------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT-TAC-----CAAGTAAATACAATTGGAGGTATGG--TATCCA--ACCTATACAAAACAATGGATTC----TCCATTA-TATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACA-AGTTCATAAAGGAAGAGGATTCATTTCCAC-----CAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACA
gi|10 : ttcTACACATTTGCTTTCGTGTGTACAGAAAATAACAT---TTA-TAGATGAATGTGATCT--GATTTCATTGTAGGTAAA--TCAAC-ATTGCA----------CTCATTCCAATAT---TTTGCCTATAACATG-A--AAGAACAGTATATTAGATA-TTCAGG--------TAAA--TTTTACCCCTAA-A-GATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGA--AACGAGCTCTCCACCATCTGCACAAAA---TGAAACTGCCTCTCATTAATATT-------------GGCAGTTTGAC-------TAGCTAGACA-A-TCTATAATGAAAGGGAA--AATATTCACATCAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACcact
gi|11 : GTGT-T----GGTGGTGTGTGTGG-GGGAGC-TCC---------AT--CAAT-TTTAAAA-CACAAATTTCTT----TATTCTTTGTTCAAGTA-GATGCTTAGAATAAA-ACAAGTCTTTTAAGCATTCAAATCAGGTATTTTGTATGCACTGAC-AATCCAT-AA-AAGAA----CTTGCACACTAC-TCTAGTTAACATCTC-T-------------------------T-TGT---GAGAATG---TACC----ATCAT----TT----TGA--AATATGTTAC--ACCGTAA----
gi|12 : ggtgtgtggTTATACATTCTA-TAGAGCGTTTTGTATAAACACACGCTTCATTGGCATTTATAACTGGTAT---TTATGCACAGAA-AGTCAAT-AA-A--Agaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|12 : tgaatatattgatcaccccA-AGTGAATTAACA--AA----ATTGCATACATC-TCTGATTAACATCAC--------------------------AT-TGT---ATGGATA---TCCT----GTCAA----cacccaccctcttttaaaacttaagtgaattaacaaaattgcatacatctctgattaacatcacattgtatggatatcctgtcaaaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|14 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatttatgcacagaaagtcaataaaacacccaccctcttttaaaacttACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtact-GGAGGA-TCCGCC-TTAAAAT-GTGATATCTAAAA-CATTAACTACTA----CA--CTA-----TAGTC-AGCGTTAAGGATAAA-A-AAGTTTCATAGGGATTCAAATATGGTACCTC--ATGCATCGAA-AGTCAAT-Aatt
gi|16 : TGAACAATTTGT-AA-A---------TTGCCCACGAC-TATGAATAAAATCTCA--------------------------T-TGT---ATGGATATAGTACC----ATAAA----TT----CAA--AATGTGTGAT--CCTGTCA----Accccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|17 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaaA--CGATCGATTTTACAAATAATGTCTTCTTCCAAC-----TTTATTTAGAACCGA-A--AACAG---CATTTTAAATAGT-CAGG-CATCTTTTTAATATTTTATCCC-----------AATAATGCCATTAGATCAAA------------------TAAACAAACCAAA-TGAAAACAGGA--TGTCCA--TCCTATGCAAAA--ATGGAACCGTTTCTCATTTATATaaatatt
gi|2 : acaaaaaatacatagttatgggtGGACAACG----CATATACTGTCCGCGCTCAC-------CAAATCC-AACATTGTTGAA-AGGGGTCATCC-ACCACGTCTGCTACGGCTTTACTTTCACGTGTACAGAAAATAACAT---TTAATGAACGG-TGTGACCA--AACTTCATCGGAAGTAAA--CGATC-ATTTTA------ATGACTCGTTCTAATATTATATCATTTGTAACCTA------------TATACTACATA-T-CCGTGTATCTTCCAAACGTTTTACCCCAAA-AATATTAAATGAAACACTAGGACTAAAAAA-TTCAT-AAC-----TAAGTAAATGAGATTGGAGTTACGG--TATTCC--ACCTATATAAAA--ATGGACTCGCTCTTCATTAGCATGTCTTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATG-A-TCCATAAAGAAAGGGGATTAATTTCCAT-----CAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAA-AATGA-AAA
gi|3 : G-GGGGTA-TTC--T-ATA-----GTAATATTTAAAA-CACCATTTTATATATACACACTACGTTCTAGAA-AGTGTTTAGGATAAA-ACAAACTTCTTAGGGATTTAAATTGGATACCTTT--------GAA-AATCCAT-AA-A--AA----CTTGCACACATA-TCTGATCAATATCTCATT------GTATAGATATACAATTAAT-TATGTAATGAATGAT-TATCTGAAATTCA----TT----CAA--AAACAGTTATTTACTGCAAT---ATTACAAGC-ACTGGATTCGCTGTCGCCAGGAAAAAGAAA------AGTGCCATGTTCA-GTGTTTTATGCATCTTTCAGCTACACCAGT-AAT-CTT---TTCTA-TCAAAATACATGTTGGGACAACA----TATATGCTGATCC-GCTCACCCAA--CCAAACCTGAACATTGTGGTAGGGGGGTCATACCGCCCCGGTTGCTAC-CTTTTGCTGTCATGTATACAGATAACAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAAATC-ATC-ATTATA------TTGACTCATTCCAATATCATTTCATCTATAACCTACAGTA-------TATACTAAATA-T-CAGAGTATCTTTTAAACGTTTTACCCCAAACA-TATTAAATAATACCCTAAGTCCAATGAA-TCCAT-TAT-----CAAGTAAATAAAATTGGAAAAATGA--TATTAA--ACCTATATAAAA--gaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|4 : GTATGTGTGT----GCAGGGAGG---GG-GAAGGAATCT--CTGTAAAAT-TTAAAAACTAAAAACATCAACTTCTG----CATTCTACATTCTAGTA-ATTTTTTAGGATACA-AGAAACTTCATCGGAATTCATATCTAGTACCTCTCATGCACTGAA-AGTCTAT-AA-A--A---------CACCCAGCATCT--TTAA
gi|4 : tatctatctctATGAAATGAA-A--CAAT-GT-A--A-----CTTGCACACAAC-TCTGATTAACATCTCATT------G---------------------T---ATG-ATA----ACCT---GTCAAAACATTCCAGTAATGAATG-GTTAT---CTG-AA----GTT-AATTTTACTCAATTCGCTGCTGCCAGGAATAATTAGGAATAATCTACACTGTCAA-GTGTATAT-GTTTCTTGCAGCTGCACC-GTTAATATACAAGTTTTAATCAACATATGTGTGAGGACAATGCGTATATATATTGACCCCGCTCAC--ATTGCCCAACCTGAACATTGCGGGA-AGGGGTCGTCCCGGCCCGGCTTATACGCC-TTGCTTTCATGTGTAC---TAATAACaacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|6 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttga-TGTGACCC--AATTTCGTTGGAGGTAAA--TCATC-ATGTTA------ATGACTCATTCTAATATCATTTCAACTATAACC---A--A-------TATACTAAATA-T-TAGAGTATTTTTTGAACGTTTTTCCCCAAA-A-TATAAAATAATACCCTAAAACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGTAACGA--TATCCA--ACCTATATAAAAATATAGATTCACCCTTCATTAATATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACG-ACTCCATAAGGGAAGGGGATTAATTTCTAC-----CAGTCGT-GTATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACCtcgttttgattaa
gi|7 : TATTTTAAA-CACCAGTTTATG----CATTCTAAGTTCTAGTA-AGTGTTTAAGATAAA-ACAAGCTCCTTATGGATTCAAATCGGGTACCTCTTATGCACTGAA-AATCCAT-TA-A--AA----CCTGCACACAAC-TCTTATTAACATC---TT------A----------------A--TGT---ATAGATA---TACC----ATCAA----TT----TTA--AATATG-------CTATAA----A---CATTCtttttcatcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
gi|7 : CACTGGAATCGCTGCCGCCAAGAAAAATAAG------TGTGCCGTATACA-GTGTTTTAAGCAACTAGCAGCTACACC-GT---TATTT---TTTTTATCAAAATGCATGTTGGGACAGAG----TATATGCTGACCCGGCTCAC--ATCACCAAACCTGAACATTGCGGTA-GGGGTTCATCCCGCACCGGCTGCTACaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|8 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaaTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT-------GTTGCGGG---AA-GTACAA-T------------T-GTAATATCTAAAA-CACCATTTTCTG----CAGGTTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCCTCTTAGGGATTCAAATCGGGTACCTCTTTTGTACTGAA-AATCCAT-AA-A--AA----CTTTCACACAAC-TCTGATTAACAGCTCATTGTACGAG----------------ATATGT---ATAGGTA---TACC----CTTAA----TT----TAA--CATGTATTAC--ACTGTGATAACATT-CA
gi|9 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtTTTGGCGGGAAAATAGCAAGACATG-TCCATAAAGGAAAGGGATTCATTTCAAC-----CAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAaggtaatgaatggttgt
blockSeqs : A T A A T AA T . T A G A T T . CTCT G A . A G C C T TA GT T TGT . A C GCCTTAAAATG A TATA TT T G C A GT C A C T C AGAA A ATTGTATAGATATACAATTAAT GTA TAG TGAAA AACA CCAG TG AT TTTA TAACATT T G T A A GAATAA A T . TG A TAATATACAAG A CGTA C CCAA G A G A A . A A A . ATC G G CAAATAA T C TGAAAGAACAG G T G C T AAAAA T G T GCATAAGAA A AAC GC CC ATA A GCCT A TC T T G G AC ATCAA C G C GGGA . .
blockSeqs : T G . . . C CTGTAAAATT . . TT C . . T TT . G A . . AA . ATTGTACGAGATA . AT TG . . . GT CA TATTA C C T T T . C C . AG . AATCTT A . C ATTG G T . G A . . G . . TC . T A C T GAAAACAG . . G C C AAACA A . A AAC T GTT . . A A GTTT A TA T T G A TG . C T T TGCA . .
blockSeqs : . C . . . T TATAG . . CA C . . T TC . G A . . AA . ATTG . . A . . . CA TC GTT . G T A A . G A . G . TATTT . . G ATCA G G . G T . . A . . CG . T T C T TACAGTA . . G C C TAAA G . A TAT T AAA . . A C GCTC G . . . G A A . T G G
blockSeqs : . . C AT . . TT C . . G TT . G A . . AA . TTAA . . G . . . AT CA A . . . . T . . T . . CG . A A . T TA . . . T C AAAA G . G TAT T GTA . . . T ACCC A . G A . . . .
blockSeqs : . . . TG . . TT A . . T TT . A T . . AA . TT . . A . . . GT T TC . T . . A AA . . . . . . . . . . . A . .
blockSeqs : . . GG C . . G T . A C . . A . AT . . A . . . G .
blockSeqs : . . . . G . . G T . . A . AT . . C .
blockSeqs : . A A . . . .
blockSeqs : . A C . .
blockSeqs : . . C .
blockSeqCons : TATAG******** AA****** ATTG************************* GTT***** ATCG** ** AAAA** A** GCCC
originalCons : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCC--C-GTAAAAT-GTAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCATT------G----------------AT-TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAA----ATT-CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCAC--AT--CCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
finalCons : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TCCTATAG--------TAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-AAA------CTTGCACACAAC-TCTGATTAACATCTCATTG-------------------------TGT---ATGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAAGTT-----CATTCCACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCACATCG--CCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAAA--TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAAA--TGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA
Alignments
lowQualScore : 1 11 11 22222 3333333333 2222 222 5555555555555555555555555555555555555555555555555555555555 1 1 11 333333 111 44444444444444444444 1111 11111111 77777777777777777777777777777777 111 11111 1111 1111 2222 22222 222222 1 22 1 11111111111 1111 3333 1 111 1 11 1111 2222222 55555555555555 111111 222222222 111 111 22222 22222 1 1
lowQualScore : 1 1 1 5 1 88 1 88 1 1 1 1 1 55555 9999999999 3333 1 1 000 1 8888888888888888888888888888888888888888888888888888888888 5 1 1 5 88 444444 4 777 6 1 6 6 99999999999999999999 5 0 2222 22 1 0 5 5 0 1 22 3 1 1 3 4 55555555 4 0 33333333333333333333333333333333 55 555 88888 0000 2222 77 22 999 1 1111 66666 1 3 0 1 1 888888 4 1 0 22 0 99999999999 3 0 7777 5 3333 0 0 1 8 3 0 0 1 777 0 1 8 11 6666 6 1 2222222 7 1 88888888888888 6 6 9 1 3 777777 5 6 3 000000000 3 888 99 99 999 1 4444 3 66 0 3 3 5 1 888 0 0 00000 3 5 8 0 44444 3 3
lowQualScore : . . . . . .. . .. . . . . . ..... .......... .... . . ... . .......................................................... . . . . .. ...... . ... . . . . .................... . . .... .. . . . . . . .. . . . . . ........ . . ................................ .. ... ..... .... .... .. .. ... . .... ..... . . . . . ...... . . . .. . ........... . . .... . .... . . . . . . . . ... . . . .. .... . . ....... . . .............. . . . . . ...... . . . ......... . ... .. .. ... . .... . .. . . . . . ... . . ..... . . . . ..... . .
lowQualScore : 0 0 0 5 0 55 0 55 0 0 0 0 0 00000 5555555555 5555 0 0 555 0 0000000000000000000000000000000000000000000000000000000000 0 0 0 5 55 555555 2 555 7 0 7 7 33333333333333333333 7 6 1111 22 4 4 0 0 8 0 11 6 8 0 6 0 44444444 4 1 00000000000000000000000000000000 11 666 88888 6666 1111 99 11 333 7 2222 22222 0 2 2 0 0 888888 2 0 0 55 0 55555555555 2 2 0000 0 6666 6 0 0 0 2 8 8 4 555 0 2 0 00 5555 7 0 7777777 8 0 77777777777777 7 7 3 0 7 888888 2 7 3 222222222 5 000 22 22 111 0 2222 8 22 8 5 5 0 4 000 8 6 00000 2 0 2 7 00000 3 3
consensus : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TC-C----T-----ATA--G----TAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCA--------------------TTG---------TGTA-TGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAAGC-NATT-C---CACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCACAT-ACCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
Reference ( family-758 ) : NNNACGAGCCAAGNCGTAGTGAAGNGTGNCCCACCNCTCCTGCAAATNTGTGAATAGGTGGTGTGTGTGNGGCAGGGGCNTAGCTTNGTNAAAGTAAATCTNCAGGCCTNGAAATTTTTATTTGGGAAAGGGGGGGCTCTGGGGGTGGNCNCGTGTACTCCGCNATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTGGCNTGNAGTGTCTGCGTATAGCTACGCCGGTATGTGT-T----GGTGGCGGG---GG-GGAGGA-TC-C----T-----ATA--G----TAATATCTAAAA-CACCAATTTCTG----CATTCTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCTTCTTAGGGATTCAAATCNGGTACCTCTTATGCACTGAA-AGTCNAT-AA-A--AA----CTTGCACACAAC-TCTGATTAACATCTCA--------------------TTG---------TGTA-TGGATA---TACC----GTCAA----TT----TAA--AATGTGTTAC--ACTGTAAGTTCATT-C---CACTNGATTCGCTGCCGCCAGGAANAATNAG------TGTGCCGTGTNCA-GTGTTTTA-GCATCTTGCAGCTACACC-GT-AATACNT---TTCTAATCAAAATACATGTTGGGACAACG----TATATGCTGACCCCGCTCACATCGCCAAACCTGAACATTGCGGNA-GGGGGTCATCCCGCCCCGGCTGCTACGCCTTTGCTTTCATGTGTACAGAAAATAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAA--CGATC-ATTNTA------ATGACTCATTCCAATATCATTTCANCTATAACCTA-A--A-------TATACTAAATA-T-CAGGGTATCTTTTAAACGTTTTACCCCAAA-A-TATTAAATAATACCCTAAGACCAAAGAA-TCCNT-TAT-----CAAGTAAATAAAATTGGAGNNACGA--TATCCA--ACCTATACAAAA--ATGGANTCGCCCTTCATTAATATTTATTAGATAAATTGGCAGTTTGGCGGGAAAATAGCAAGACG-A-TCCATAAAGGAAGGGGATTAATTTCCAC-----CAGCCATGGCATATTAAATTGTGTTATGAAATAAACAACAAAAGTACCGTC-GCG-CATACAAATCAAACAAA-CAAAA-AAACA
gi|1 : ACGAGCCAAGTCGTAGTGAAGAGTGTTCC-CCACTCCTGCA--TGTGTGAATAGGTAGTGTGTGTAGGGCAGGGGCCTAGCTTTGTCAAAGTAAATCTGCAGGCCTAGAAATTTTTATTTGGGAAAGGGGGGG----GGGGGTGGTCTTGTGTACTCCGCCATATATTTAAATTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGTACAGATCTG-CGTGAAGTG-CTGCGTA--GCTACGCCGGTGTGTGT-TTGGTGGTGGTGGG---GGTGGAGGA-TC-C----CGTAAAATA--G----TAATATTTAAAA-CACCAATTTCTG----CATTCAACGTTC----A-AGT-----------A-ACAAGTTTCTTAAGGAG-CAAATTTGGTCACTCTTATGCACTGAA-AGTCAAT-AA-A--AATATACTTGCACATAAC-TCTGATTAACATCTCA--------------------TTGCAT------TGTA-TGGATA---TACC----ATCAA----TT----TAA--AATATGTTGC--ACTGTAAACGCATT-C---CACTTAAT-CACAAGCGGCAGGAATAATTAG------TGTGCCACGTACATGTGTTTTA--TATCTTGCAGCTACACT-GT-AACACGT---TTCCAATCAAAATATATATTTGGTCAACG----TTTATGCTGATCCCGCTCAC----------CT---CACTGTAGGA-GGGGGTCATTCCACCTCGGTTACTTCGCCTTTGCTTTCATGTGCACAGAAAATAACATGATTTG-TTAACGG-TGTGGCCCCTAATTTCATTGAACCTAAA--TATTC-AATATA------ATGATTCATTCTAATATTATTTCAAATATAACCTA------------TATACTAAATA-T-CAGGATATATTTTAAATGTATGAT---------TATTAAATAATGTCCCATGACCAAAGAA-TCCTT-TAC-----CAAGTAAATACAATTGGAGGTATGG--TATCCA--ACCTATACAAAACAATGGATTC----TCCATTA-TATTTATTAGAAAAAATGGCAGTTTTGCTGAAAAATACCAAGACA-AGTTCATAAAGGAAGAGGATTCATTTCCAC-----CAGCCATGTCATATTAAATTGTATTATGAAATAAACAACAAAAGTACCGTC-GTT-CATACCAATCAAATAAATCAAAATAGACA
gi|10 : ttcTACACATTTGCTTTCGTGTGTACAGAAAATAACAT---TTA-TAGATGAATGTGATCT--GATTTCATTGTAGGTAAA--TCAAC-ATTGCA----------CTCATTCCAATAT---TTTGCCTATAACATG-A--AAGAACAGTATATTAGATA-TTCAGG--------TAAA--TTTTACCCCTAA-A-GATTGAAAAATACACTAATACCAAGTAAGTCCTTGCATAAGAACAAGTAAATACAAATGGA--AACGAGCTCTCCACCATCTGCACAAAA---TGAAACTGCCTCTCATTAATATT-------------GGCAGTTTGAC-------TAGCTAGACA-A-TCTATAATGAAAGGGAA--AATATTCACATCAACAACCATGACATATTTAACTGTGTTATGAAATAAATAACAGGAGTACcact
gi|11 : GTGT-T----GGTGGTGTGTGTGG-GGGAGC-TC-C----------AT--------CAAT-TTTAAAA-CACAAATTTCTT----TATTCTTTGTTCAAGTA-GATGCTTAGAATAAA-ACAAGTCTTTTAAGCATTCAAATCAGGTATTTTGTATGCACTGAC-AATCCAT-AA-AAGAA----CTTGCACACTAC-TCTAGTTAACATCTCT--------------------TTG---------TG-A--GAATG---TACC----ATCAT----TT----TGA--AATATGTTAC--ACCGTAAG
gi|12 : ggtgtgtggTTATACATTCTA-TAGAGCGTTTTGTATAAACACACGCTTCATTGGCATTTATAACTGGTAT---TTATGCACAGAA-AGTCAAT-AA-A--Aaacaatattcagtgacctatattgtaatatattacagatcaccagtggattcgc
gi|12 : tgaatatattgatcaccccA-AGTGAATTAACA--AA----ATTGCATACATC-TCTGATTAACATCACA--------------------T-----------TGTA-TGGATA---TCCT----GTCAA----cacccaccctcttttaaaacttaagtgaattaacaaaattgcatacatctctgattaacatcacattgtatggatatcctgtcaaaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|14 : tgaatatattgatcaccccttatacattctatagagcgttttgtataaacacacgcttcattggcatttataactggtatttatgcacagaaagtcaataaaacacccaccctcttttaaaacttACGAGCCAAGATGTAATGAAGTGTGACCTACCTCTCCTGCAAATTTGTG--TAAGTGGTGTATGTGTGGCAGGGGCATAGCTTGATAAAAGTAAATCTTCAGGCCTT----TTTTTATT----------GGGACTCTGGGGGTAGGCAC---TACTTCGCAATATATTaaacattccatttcataaataattgtctgaaattcagttgtacacaactgtttacattgtcatttataagcattaattagatttg
gi|16 : gtaattctactctactcctgctaagagaaaccgctccgaaacgccacaagaaacttagacttaaccataagatgtattaaaaagtgtacctcaaccgcgtttcactcccagtact-GGAGGA-TC-CGCCTT-----AAAATG----TGATATCTAAAA-CATTAACTACTA----CA--CTA-----TAGTC-AGCGTTAAGGATAAA-A-AAGTTTCATAGGGATTCAAATATGGTACCTC--ATGCATCGAA-AGTCAAT-Aatt
gi|16 : TGAACAATTTGT-AA-A---------TTGCCCACGAC-TATGAATAAAATCTCA--------------------T-----------TGTA-TGGATATAGTACC----ATAAA----TT----CAA--AATGTGTGAT--CCTGTccccaccttcctcgatttagggcttattaataaatgaatgaacaatttgtaaattgcccacgactatgaataaaatctcattgtatggatatagtaccataaattcaaaatgtgtgatcctgtcaaaaatatt
gi|17 : ggaggatccgccttaaaatgtgatatctaaaacattaactactacactatagtcagcgttaaggataaaaaagtttcatagggattcaaatatggtacctcatgcatcgaaagtcaataccccaccttcctcgatttagggcttattaataaatgaaA--CGATCGATTTTACAAATAATGTCTTCTTCCAAC-----TTTATTTAGAACCGA-A--AACAG---CATTTTAAATAGT-CAGG-CATCTTTTTAATATTTTATCCC-----------AATAATGCCATTAGATCAAA------------------TAAACAAACCAAA-TGAAAACAGGA--TGTCCA--TCCTATGCAAAA--ATGGAACCGTTTCTCATTTATATcaaaaatatt
gi|2 : acaaaaaatacatagttatgggtGGACAACG----CATATACTGTCCGCGCTCAC-----CAAATCC-AACATTGTTGAA-AGGGGTCATCC-ACCACGTCTGCTACGGCTTTACTTTCACGTGTACAGAAAATAACAT---TTAATGAACGG-TGTGACCA--AACTTCATCGGAAGTAAA--CGATC-ATTTTA------ATGACTCGTTCTAATATTATATCATTTGTAACCTA------------TATACTACATA-T-CCGTGTATCTTCCAAACGTTTTACCCCAAA-AATATTAAATGAAACACTAGGACTAAAAAA-TTCAT-AAC-----TAAGTAAATGAGATTGGAGTTACGG--TATTCC--ACCTATATAAAA--ATGGACTCGCTCTTCATTAGCATGTCTTGGATAAATTGATAGTTTGGCGGGAAAATAACAA-ATG-A-TCCATAAAGAAAGGGGATTAATTTCCAT-----CAGCAATTGCGTAATAAATTGTGTTATGAAATAAACAATAAAAGTACCATC-GGGACATACAAATCAAACAAA-AATGA-AAA
gi|3 : G-GGGGTA-TT-C----T-----ATA--G----TAATATTTAAAA-CACCATTTTATATATACACACTACGTTCTAGAA-AGTGTTTAGGATAAA-ACAAACTTCTTAGGGATTTAAATTGGATACCTTT--------GAA-AATCCAT-AA-A--AA----CTTGCACACATA-TCTGATCAATATCTCATTGTATAGATATACAATTAATTA---------TGTAATGAATGAT-TATCTGAAATTCA----TT----CAA--AAACAGTTATTTACTGCAA---TATTACAAGCACTGGATTCGCTGTCGCCAGGAAAAAGAAA------AGTGCCATGTTCA-GTGTTTTATGCATCTTTCAGCTACACCAGT-AAT-CTT---TTCTA-TCAAAATACATGTTGGGACAACA----TATATGCTGATCC-GCTCACCCAACCAAACCTGAACATTGTGGTAGGGGGGTCATACCGCCCCGGTTGCTAC-CTTTTGCTGTCATGTATACAGATAACAACAT---TTA-TAAACGG-TGTGACCC--AATTTCATCGGAGGTAAAATC-ATC-ATTATA------TTGACTCATTCCAATATCATTTCATCTATAACCTACAGTA-------TATACTAAATA-T-CAGAGTATCTTTTAAACGTTTTACCCCAAACA-TATTAAATAATACCCTAAGTCCAATGAA-TCCAT-TAT-----CAAGTAAATAAAATTGGAAAAATGA--TATTAA--ACCTATATAAAA--gaaaaccaggtcatactaagtttacctttatatattaacatggaagatgcttacactcgcaagacgatgatgacctgtatattataatagactagtcagcatatatttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccatggcgccagttgatgtttgcaaactgtataacggtctattgatcaaacaagtttactttaggaagtaaggtgtgattaactgagacaaacatatttttcagaaaagaaatcatagaagattattaagactaaatagtatcaattttgtaaattaaggcgtataacacagaatatattc
gi|4 : GTATGTGTGT----GCAGGGAGG---GG-GAAGGAATCTC----T-----GTA--AAATTTAAAAACTAAAAACATCAACTTCTG----CATTCTACATTCTAGTA-ATTTTTTAGGATACA-AGAAACTTCATCGGAATTCATATCTAGTACCTCTCATGCACTGAA-AGTCTAT-AA-A--A---------CACCCAGCATCT--TTAA
gi|4 : tatctatctctATGAAATGAA-A--CAAT-GT-A--A-----CTTGCACACAAC-TCTGATTAACATCTCA--------------------TTG---------TAT----GATA----ACCT---GTCAAAACATTCCAGTAATGAATG-GTTAT---CTG-AAGTTAATT-T---TACTCAATTCGCTGCTGCCAGGAATAATTAGGAATAATCTACACTGTCAA-GTGTATAT-GTTTCTTGCAGCTGCACC-GTTAATATACAAGTTTTAATCAACATATGTGTGAGGACAATGCGTATATATATTGACCCCGCTCACATTGCCCAACCTGAACATTGCGGGA-AGGGGTCGTCCCGGCCCGGCTTATACGCC-TTGCTTTCATGTGTAC---TAATAACaacttgaatgaaatgaaacaatgtaacttgcacacaactctgattaacatctcattgtatgataacctgtcaaaacattccagtaatgaatggttatctgaagttaattttactcaattcgctgctgccaggaataattaggaataatctacactgtcaagtgtatatgtttcttgcagctgcaccgttaatatacaagttttaatcaacatatgtgtgaggacaatgcgtatatatattgaccccgctcacattgcccaacctgaacattgcgggaaggggtcgtcccggcccggcttatacgccttgctttcatgtgtactaataactcgttttgattaa
gi|6 : tatctatctctgtatgtgtgtgcagggagggggaaggaatctctgtaaaatttaaaaactaaaaacatcaacttctgcattctacattctagtaattttttaggatacaagaaacttcatcggaattcatatctagtacctctcatgcactgaaagtctataaaacacccagcatctttaaaacttga-TGTGACCC--AATTTCGTTGGAGGTAAA--TCATC-ATGTTA------ATGACTCATTCTAATATCATTTCAACTATAACC---A--A-------TATACTAAATA-T-TAGAGTATTTTTTGAACGTTTTTCCCCAAA-A-TATAAAATAATACCCTAAAACCAAAGAA-TCCGT-TAT-----CAAGTAAATAAAATTGGAGTAACGA--TATCCA--ACCTATATAAAAATATAGATTCACCCTTCATTAATATTTATTAGATAAATTGGCAGTTTAGCGGGAAAATAACAAGACG-ACTCCATAAGGGAAGGGGATTAATTTCTAC-----CAGTCGT-GTATATTAAATTGTGTTAGGAAATAAACAAGAAAAGTACCtcgttttgattaa
gi|7 : TATTTTAAA-CACCAGTTTATG----CATTCTAAGTTCTAGTA-AGTGTTTAAGATAAA-ACAAGCTCCTTATGGATTCAAATCGGGTACCTCTTATGCACTGAA-AATCCAT-TA-A--AA----CCTGCACACAAC-TCTTATTAACATCTTA----------------------A---------TGTA-TAGATA---TACC----ATCAA----TT----TTA--AATATGCTAT--Atttttcatcctcacttcaaacccatgaatgattcatatacaattttaccatctctactgtatccttatactagtttacaaaacatgttatac
gi|7 : ---CACTGGAATCGCTGCCGCCAAGAAAAATAAG------TGTGCCGTATACA-GTGTTTTAAGCAACTAGCAGCTACACC-GT---TATTT---TTTTTATCAAAATGCATGTTGGGACAGAG----TATATGCTGACCCGGCTCACATCACCAAACCTGAACATTGCGGTA-GGGGTTCATCCCGCACCGGCTGCTACaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaacactggaatcgctgccgccaagaaaaataagtgtgccgtatacagtgttttaagcaactagcagctacaccgttattttttttatcaaaatgcatgttgggacagagtatatgctgacccggctcacatcaccaaacctgaacattgcggtaggggttcatcccgcaccggctgctac
gi|8 : tattttaaacaccagtttatgcattctaagttctagtaagtgtttaagataaaacaagctccttatggattcaaatcgggtacctcttatgcactgaaaatccattaaaacctgcacacaactcttattaacatcttaatgtatagatataccatcaattttaaatatgctataaacattcaaggaaatgaatggttgtctgaaatcattaaaaaaacaattgtttactgcaatatagcaaaTCTGGCCTGCAGTGTCTACGTATAGCTACGCCGGTATATCT-------GTTGCGGG---AA-GTA-------C----A-----ATT--G----TAATATCTAAAA-CACCATTTTCTG----CAGGTTACGTTCTAGTA-AGTGTTTAGGATAAA-ACAAGCCTCTTAGGGATTCAAATCGGGTACCTCTTTTGTACTGAA-AATCCAT-AA-A--AA----CTTTCACACAAC-TCTGATTAACAGCTCA--------------------TTGTACGAGATATGTA-TAGGTA---TACC----CTTAA----TT----TAA--CATGTATTAC--ACTGTGA
gi|9 : tactccgtcatattttttttttaaaaatcagagtttttgtgtgtattttatctatgtaaaacatctatcaattacttacggattttactttctggaataaatgcatgtTTTGGCGGGAAAATAGCAAGACATG-TCCATAAAGGAAAGGGATTCATTTCAAC-----CAG-CATGGCATATGAAATTTTGTTATGAAGTAAACAA-AAAAGTACTATCTGCA-CATACAAATCAAACAAA-CAAAA-AAACAtaacattcaaggtaatgaatggttgt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ACAACAAAATTAATGTCAGCACCTACAAATCAAACAAAATGAAAAAAAACAAACAGGTTATACCAGGATTTCCTGTATCTATTTACATGGAAGATGTTTATACTCATACAACATTGATAACCTGTGTATTAAAATAGACTAGCCATCATATCTTTTGTAGTCTTCATCATCTCCGACACTAGCGCCAGCTGATATTGCTGTAATGTTTTGAGACAGTATAATGGCCTGTTTATATAAACAAGTTTAATGATGGGATAAACGGAGACAAGCAGACGTTTAAGAAAGTAAATCGTAGAAGGTGGTCAAGATTATACCGCATTGTAAAATAAAGCATAGAATACAAATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCCATCTTAATACTTAGGCTGGCCTTCATGGAGGCAAG
Unaligned ( gi|13 ): GCCAACAGATATTGCTGGTATGTTTACAGCCAGTATAACTTTCTGTTTATATTGAAAAACATTTAGGTCAGATTTGATAAACTGAGACCTTTTAGAAAAAAGGCGTAGATGATAAAGAATAGACCATATTGTAAATAAAGCATTGTATATAGTATATATATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAATAGCTATCTAAATACTTAAGACCTGCCTCCATAGAGGCAAGT
Unaligned ( gi|15 ): GTCTGTACCAATTTTGCCTATATCTCTTTACAAAGAGGACGCATACACTTGCAGAGCGATAATAACCTGTGTATTAAAATAGACTAGTCCGCATATCTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGACCGTTCAATAGCTCCAACTGATATCGCTGTAATGTAATGACCTATTTATGAAAACAAGTTTAATGATTTGATAAACTGAGACAAACAGACCTATATGAACGT
Unaligned ( gi|18 ): CGTAGAAGATGATCAAGACTATACCGTATTGTAAAATAAAGCGTAGAATACAGAAAGTATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTATCTTAATACTTAGACTGGCCTCCTAGAGGCAAGCCATAAAGAAGGATT
Unaligned ( gi|19 ): TTACACTCGCAGAATGAAGATAACCTGTGAATTAAGATAAACTAGTCCGCATATCTTTCGTTGTCTTGAACTGATATTGCCGTAATTTTTAGA