lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555 111 000000000000000000000000000000000000000000000000000000000000000000 1111 333333333333333333333333333333 11 1111 666666666666666666666666666666 11 111 1111 11 11 2 33 33333333 222 77777777777777
lowQualScore : 7 3 33333333333 777 3 55 111111111111111111111111111111111111111111111111111111111111111111 4 4444 222222222222222222222222222222 6 99 1111 666 1 6 888888888888888888888888888888 99 7 1 11 3 99 1 99 1 111 8888 44 1 6 0 8 0 8 44 66 99 8 22 4 2 4 2 4 66 8 11 7 4 4 3 77 2 4 2 44444444 4 2 2 111 4 99999999999999 4 2 2 2 4 88 4
lowQualScore : . . ........... ... . .. .................................................................. . .... .............................. . .. .... ... . . .............................. .. . . .. . .. . .. . ... .... .. . . . . . . .. .. .. . .. . . . . . .. . .. . . . . .. . . . ........ . . . ... . .............. . . . . . .. .
lowQualScore : 3 5 22222222222 555 0 88 666666666666666666666666666666666666666666666666666666666666666666 6 7777 222222222222222222222222222222 7 33 3333 888 7 7 444444444444444444444444444444 22 3 0 33 5 22 0 33 0 777 7777 77 4 4 8 0 8 0 22 22 44 0 22 0 0 5 2 0 77 3 77 0 0 0 0 00 5 0 5 55555555 0 5 5 000 0 55555555555555 0 5 5 5 0 00 0
consensus : AAATAAAAANAAC----A------GATTG---CTANATATGTGCAAAG--------GTAT--------AAATGC---------CAT-TT-T-GTA--------TTG-----GCCTTTTGGAAACTATATTTTATAGGATA-----GTCGTTTGTGGAG-TANT-----G-CAAGACAAAANA-AGTA-T-TGCTATTG-GA--------A---A----CAAAAA---GTNATT--TGCCGCCCGCGGGATTCGAACCCGGG--TCGCCTNGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAAT-ATGA-AAATAATAAGTAATTANTC-AAATACGCAATAACAAAATTAGAAAGTACCGAAAANAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAATNAGNGCAATCGGCGATNNGGAGCTCAANCGNGGNACTATTTCAGGACGTTCNTNGNTTCTTGAAAGTTGTTACTATTNATAGAACATCCTAATATACTACGANANTTCGAAANGNGACNACTAAACNNAGACAAATNTGCCAAGATAGAAA
Reference ( gi|3 ) : AAATAAAAATAAC----A------GATTG---CTATATATGCACAAAG--------GTA---------AAAT-----------CAT-TT-T-GTA--------TTG-----GCCTTTTGGGAACTATGTTTTATAGGACA-----GTCGTGTGTAGAA-AAAT-----G-CAAGACAAAACA-AGTA-T-TGCTATTG-GA--------A---A----CA-------GTTGTT--TGCAGCCTGCAGAATTCAAACCCGGG--TTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAAT-ATGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|4 : AAATAAAAATAAC----A------GATTG---CTATATATGCACAAAG--------GTA---------AAAT-----------CAT-TT-T-GTA--------TTG-----GCCTTTTGGGAACTATGTTTTATAGGACA-----GTCGTGTGTAGAA-AAAT-----G-CAAGACAAAACA-AGTA-T-TGCTATTG-GA--------A---A----CA-------GTTGTT--TGCAGCCTGCAGAATTCAAACCCGGG--TTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAAT-ATGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|2 : AAA-AAAAATAAC----AAAGAGCGATTG---CCAGATATGTGCAAAGAATCAATTGCATATCTGGACAAAT-----------CTT-TT-TTGTT--------TTG-----TCTTCTTTGAAGC-ATATTTTATAAGATACTAATATAGTTTATGGAG-TACT-----G-CAAGA---AACA-AGTAGTATACTAGTG-AA--------A---A----GA-------ATAATT---GCCGCTTGTGTGACTCGAACCTAGG--TCACCTCGGCGGATGTATTCATTA--TATGTTTATTGGACAAATGAAT-ATGACAAAT-ATAAGTAATTAGTC-AAATACACATTAACAAAATTAGAAAGCACCGAATAT
gi|8 : gtatttcaaagaaagttcaatccaatgtacttggaaaaaacgtcattctccaagatgacttagatatgtatatacatgtatatatatatatacattttgtattgaaaaaaagttaaattatatatttaataaagttcaattcccgcattaatttattgatatattgtgaaaaaaatccaatatccaagttaaacaatgtatttcaaagaatgtctagtatcaacataacctacagttacattgtaaacatcttcagaaaagtccagtctccgagttgaaatctgcatttcaaagaaagttccataactccatgaaaaaaatcaactattatctcagagctgccgtttaaagtttgaatacaaaattgaataaccaaatttaaccatactatatttcacagatgacatatatttaaaaagttcgaagtgaattgtgtatttcaaagaaagtaaggacgttcagcacatcgttgattcggagtcaatacactatagtgtatgtattttaaaaaaatgttcaatcaccttgtcgaattctgcaataatatAAATAAAAAGAAC-----------GATTG---GTAGATATGTGCAAAA--------GGA---------CAATAC---------CAT-ATAT-GGA--------TAGTTCATGTCTTTTTTTAACC-TATTTTATAGGATT-----GGGGTTTATGGAGTAGATCTACTG-TAAG-CAA--TC-AGTT-T-TGCTATTG-AAGTGAACAAA---A----CA-------AAATTT--TGCCGCCTGTGGGATTCGAGATCGGA--TCGCCTTGGTGA---CAATCGTTGGTGATTTgataacaggctag
gi|1 : attttaaaaaaattcaatctactagttaaatcatgcaaatagtgctaaAAAAAAAACCCAAA------GATTGTTGCTATATATGTGCAAAG--------ATA---------AAATG----------CATATA-T-GTATTTTAATTTTT-----TTTTTTTGGAACCTAT-TTTTATAG---------GTTGTTTATGGAG-TACT-----G-TAGGA-AAAAGATAGTA-T-TGC--TTGTGA--------A---A----
gi|7 : acaagaaattaaaatttaacttgaaacccttacgcataaggcccatttgtatacaatataaacacatttggttgatttgttcttattataaaaaatatttttagaaaataacaattatatccatttttgggcctctgctgacccttacgtatattaaattcccttaaagatccaatctcaactgtaatgattaaacgatgccccagtcatcaagatgtttgaaatattgttaaaataaatgtgaaaaacattatttcctgttttcccatagtattcatattcaattattacaatacacttactttcccaaatggaacctagcactttatttgaacaaacttgaaatctctattcatagagatcatttcaacatataaacaaatttggcttgtcggttctctaggagaatacttttgaaaaatcccaattttaccccttctggggcctctgctggatactactcatagggataatttatttccaatataaacgaatttagctgatcgaatcttgagaaaaagcgtttcaatgaaaacaaatgtaaactgataagtcactgggtcggagccaattttgacccccgggtcatggcttaaacaaatctgaaagaaactgattagatgatactgcatgcaaatatcaaagcgtcaggcccttgtacttttggaaaagaagatttgaaattttgaaacagataataccctggagcggggtcatatttgaccactgtgtcatgattttaacatacatgagagagcttcatgttacaatacttctcaccagattttgagaaaaatctttcaagcggtttcagagaagtcgtttgaagcaaaagttaacgacggacgacggacacagggctatcagttttgctcaggtgagctaaaacgaaatagttctgtccttgaattgaattacataagttaaaaataagtcagtcttcaagttcagttatctatttaaaaagtccatatccaagttatattaagtattccaaatgaagtccaatctccaaatgtatttgaaaaaataaatctctaacatgacctagatgtatatatgtgaacacgttcaatctccaagatgaattgtatgtttaaagtaagttcaatccccacgtttatttattgcacatattgtttattgcacatattgttaaataaagttgaataatatattaaagagtgtccaaactctaagacaatacacatgtgcattgtttatatcttgaaaaaacgtcaagtatccgagttataaatcggtttttctcagaatatccaatatgatctagttatatatatatatatatatattcataacaatatctccatgaaaaagtttaagcacacaattgaatagttaagttgaattataatatatttcacaaaatgttaatttcccatgaatttaaatagttcgatctaagttgaatgatgtatttcaaagaacgttttgactatgcgtcagagtcaacatgtatgaacatatatacatgattttttaaaatgttcaatctcttagttgaataatgcaaataatatttgATATGTGCAAAG--------ATAT--------AAATGCATATATGGACAT-TT-T--TA--------TTT-----G----TTGGAAACTA-ATTTTAT-GGATA-----------TG-------AAT-----GTCGGAATAAAATA--GCA-C-TGCCAT-G-GA--------A---ATGAACAAAAAAGTGTCATTATTGTA---TG--GGATTCAAACTCTGA--TCTCCCAAGAGA---TAATCTGCA--GA--TATAACAAACA--------ATAA-AAATAAT---TATTTCTTTGGAAT-TGCAATAA-AAtgaacaaaa
gi|9 : aatggtagcaagACTAT-TTTTACAGGATA-----GTCGTTTGTGGAG-TACT-----G-TAAGG-AAAAGT-GGCA-T-TGCTAGTG-AA--------ACTAA----CAAAAAC--GGTATT--TGCCGTCCATGGGATTCGAATATGAAACTTACC------A---CAGCCGG-----GCTTATTT--GATGAATGAAT-A------------AGTAATTAATC-AAATATGCAATAACAAAATTAGAAAGTATCGAAAAAAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAATttaatagagatggggaaatattatcgggtaggtacataaaggacaaaaacaaacaatattttaatttaggcct
gi|5 : TATT--TGCTGACCGCGGGATTCAAACCTGGG--TCGCCTTGGCGA---AAATCAGT---GATGTTTATTAGATAAATGAATAATGA-AAA-GATACGCAATTATTC-AATTATACAATAACAACATTACAAAGTACCGAAAAAGGGTCAAAGCTGGCTTATTTAAATCTCCAAACTAAATAAGTGTAATCGGTGATTCGGAGTTCAAACGAGGAACTATTTC--------CATAGTTTCTTGAAA---GTTACTATTTATAGAACATCCTAATATACTACGATAATTTGAAAGGAGACAACTAAACTAAGACAAATTTACCAAGg
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTTCAACGAATATTCAGCATCCAAGACAATCTACATGTACATTGTATATATGAAAAAAATCCAGCATCCGAGTTGAAATCTCTCTTTCAATGAAAGTTCAATTTTCAAGATGATCTAGATGTATTTATAAATTTATAAAACAAAAATTTCCATGGAAAAGAACGATTATTATCTACGAGCTGACGTATACATTAAAAAAATACCTTAGTTTAATTATAGTATATTTCACAGAAAGTTAATCTCCCGGACAACATATATTATATTAAAAATGTTCAGTCTCGATATTATGTATTTCAAAGGAAGTT
Unaligned ( gi|10 ): TAAAAAAGTATAATTCTTGTCATGGGATTTGAACTCTGGATTTCCCAAGTGACAATCTGCAGATATAATACAAACGTCCAATTTTGGCAATGACAACCAATAAAAATAATATGGGGAGGATGGGGATGCAATAAAATTAGTAGAATAGGGGCAATATTATTCGGTAGGTAGGCAAAGGACAAACAATAATTTATTTTAGATCT
Unaligned ( gi|11 ): AATTTATATACTATATTTCAAAGAATGTTTAATCTCCAAGTTAATATATAAACCATATGTACATTGTATATATATAAAAAATACAGTTTCCTGGTTTAAATATGTTTTTCAAAGAGTTTTCAATCAAGTTAGGCTATATGCTTATAGCATATATCTTTAAA
Unaligned ( gi|12 ): ATCATTGGGTATTAGAACGGTTGCTAGATATATGCAAAGAAATGAATGCATACGTGACAAATATTTTGTTCAGTTTATTGAAAACTATCTTTTGTAGATATAAGAACCCTTGCATGGAATATTGAAGTAAAA
Unaligned ( gi|13 ): AAATATAATAAAGAATGTTTGCTGGATATATGCAAAGAAATCAATATTTTTTTCGTAACCTATTCTACAGGAGAAGCCGTGTACTATAGGGACAGACAGTGTTGCTAGTGAAATAATTCAACAAAACAAA
Unaligned ( gi|14 ): TATCTAATTGTCTCAAAATATTTTTTAAAAAAAATATAACAAAGAACAGTTGCTGGATATTTGCAAAGATATAAATGCATTTGGACAAATCTCTGTTTT
Unaligned ( gi|15 ): TTAAAGTGAATTAAGAGAAGCTGTTAGAAGAAATAAATACATGGACACAGGGTTATCAGAATAGCTCACCTTAGGTAAGCTAAA
Unaligned ( gi|16 ): GATGCAATAAAATTAACAGAGATGGGGCAATACCGTCGGGTAGGTTGGTAAAAGACAAAACAATGTTTTATTCTAG
Unaligned ( gi|17 ): TATAAGAACAGTAGCTTGAACTAGATATGTTTAAAGATATAAATGTATATATGGACAATTTAT
Unaligned ( gi|18 ): TCGTTTCAATCGAAAGTTAACAATAATGGACACAGGGCTTTGCTCAAGTAAGCTAAA
Unaligned ( gi|19 ): TCACTTGATATGTACAAATATATAAATGCATATATGGACAATCTTTCTTTTT
Unaligned ( gi|20 ): ATAAAGGACAAAACAAACAATATTTTAGTTTAGGC
Alignments
lowQualScore : 1 11111 111 222222222222222222222 77777777777777 222222222222222 222222222222222 1111111 11 111 4444444444444444444444444444444 111 111 1 1 888888888888888
lowQualScore : 5 1 88888 7 222 1 111111111111111111111 00000000000000 4 777777777777777 3 7 111111111111111 77777 3333333 77 4 11 111 3 9999999999999999999999999999999 3 1 1 000 0 222 11 3 6 6 88 3 44 6 77 0 1 1 3 4 2 1 11 6 22 0 3333 1 0 7 1 1 1 0 6 1 222222222222222 1 1 1 1 1 22 1 0
lowQualScore : . . ..... . ... . ..................... .............. . ............... . . ............... ..... ....... .. . .. ... . ............................... . . . ... . ... .. . . . .. . .. . .. . . . . . . . .. . .. . .... . . . . . . . . . ............... . . . . . .. . .
lowQualScore : 0 0 44444 4 555 0 888888888888888888888 55555555555555 4 111111111111111 6 9 444444444444444 88888 8888888 11 4 00 222 0 3333333333333333333333333333333 0 4 0 000 1 111 44 7 7 7 88 2 00 7 00 8 4 0 2 0 5 0 77 7 00 7 3333 0 7 3 0 0 0 7 7 0 333333333333333 0 0 0 0 0 00 0 7
consensus : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAG--------ATATA--------AATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TG-CA-AGACAAAANN-AGTATTGCTANTGGA---A---A----CAAAA---A---GTCGT--TTGCCGCCCGCGGGATTCGAACCCGGGTCGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
Reference ( family-722 ) : AAATAA-AAANAAC----AGATTG---CTANATATGTGCAAAG--------GTATA--------AATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TG-CA-AGACAAAANA-AGTATTGCTATTGGA---A---A----CAAAA---A---GTNAT--TTGCCGCCCGCGGGATTCGAACCCGGGTCGCCTNGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTANTC-AAATACGCAATAACAAAATTAGAAAGTACCGAAAANAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAATNAGNGCAATCGGCGATNNGGAGCTCAANCGNGGNACTATTTCAGGACGTTCNTNGNTTCTTGAAAGTTGTTACTATTNATAGAACATCCTAATATACTACGANANTTCGAAANGNGACNACTAAACNNAGACAAATNTGCCAAGATAGAAA
gi|1 : AA-AAAAAACCCAAAGATTGTTGCTATATATGTGCAAAG--------ATA-A--------AATGCATATATG-----TATTT-TAATTTTT-----TTTTTTTGGAACCTAT-TTTTATAGG-----------T--TGTTTA--TGGAGTAC------TG-TA-GGA-AAAAGATAGTATTGCTTGTGAAATGA---A----CAAAA---
gi|12 : acaagaaattaaaatttaacttgaaacccttacgcataaggcccatttgtatacaatataaacacatttggttgatttgttcttattataaaaaatatttttagaaaataacaattatatccatttttgggcctctgctgacccttacgtatattaaattcccttaaagatccaatctcaactgtaatgattaaacgatgccccagtcatcaagatgtttgaaatattgttaaaataaatgtgaaaaacattatttcctgttttcccatagtattcatattcaattattacaatacacttactttcccaaatggaacctagcactttatttgaacaaacttgaaatctctattcatagagatcatttcaacatataaacaaatttggcttgtcggttctctaggagaatacttttgaaaaatcccaattttaccccttctggggcctctgctggatactactcatagggataatttatttccaatataaacgaatttagctgatcgaatcttgagaaaaagcgtttcaatgaaaacaaatgtaaactgataagtcactgggtcggagccaattttgacccccgggtcatggcttaaacaaatctgaaagaaactgattagatgatactgcatgcaaatatcaaagcgtcaggcccttgtacttttggaaaagaagatttgaaattttgaaacagataataccctggagcggggtcatatttgaccactgtgtcatgattttaacatacatgagagagcttcatgttacaatacttctcaccagattttgagaaaaatctttcaagcggtttcagagaagtcgtttgaagcaaaagttaacgacggacgacggacacagggctatcagttttgctcaggtgagctaaaacgaaatagttctgtccttgaattgaattacataagttaaaaataagtcagtcttcaagttcagttatctatttaaaaagtccatatccaagttatattaagtattccaaatgaagtccaatctccaaatgtatttgaaaaaataaatctctaacatgacctagatgtatatatgtgaacacgttcaatctccaagatgaattgtatgtttaaagtaagttcaatccccacgtttatttattgcacatattgtttattgcacatattgttaaataaagttgaataatatattaaagagtgtccaaactctaagacaatacacatgtgcattgtttatatcttgaaaaaacgtcaagtatccgagttataaatcggtttttctcagaatatccaatatgatctagttatatatatatatatatatattcataacaatatctccatgaaaaagtttaagcacacaattgaatagttaagttgaattataatatatttcacaaaatgttaatttcccatgaatttaaatagttcgatctaagttgaatgatgtatttcaaagaacgttttgactatgcgtcagagtcaacatgtatgaacatatatacatgattttttaaaatgttcaatctcttagttgaataatgcaaataatatttgAGAAC----GG-TTG---CTAGATATATGCAAAG--------AAATG--------AATGCATACGTGACAAATATTT-TG-T-TCA-----GTTTATTGAAAACTATCTTTTGTAGATAT-A-----AGAACCCTTGCATGGAATAT------TG--A-AG-TAAAA
gi|13 : atcattgggtattATAATAAAGAAT-----GTTTG---CTGGATATATGCAAAG--------AAATC--------AAT---------------ATTT-T---------------TTTCGTAACC--TATTCTACAGG-AGAA-----GC--CGT---------GTAC------TA-TAGGGACAGA--C-AGTGTTGCTAGT-GA---A---A----TAA
gi|14 : aaatATAACAAAGAAC----AG-TTG---CTGGATATTTGCAAAG--------ATATA--------AATG-------------CATTT-ttcaacaaaacaaa
gi|17 : tatctaattgtctcaaaatattttttaaaaaaaatATAA-GAACAGT----AGCTTGAA-CTAGATATGTTTAAAG--------ATATA--------AATGggacaaatctctgtttt
gi|2 : tAAATAACAAAGAGC-----GATTG---CCAGATATGTGCAAAGAATCAATTGCATATCTGGACAAAT-C------------TTTTT-TG-TTTTG-----TCTTCTTTGAAGC-ATATTTTATAAG-AT-ACTAATAT--AGTTTA--TGGAGTAC------TG-CA-AGAAACAAGT-AGTAT-ACTAGTGAA---A---A----GAATA---A----------TTGCCGCTTGTGTGACTCGAACCTAGGTCACCTCGGCGGATGTATTCATTA--TATGTTTATTGGACAAATGAATA-TGACAAAT-ATAAGTAATTAGTC-AAATACACATTAACAAAATTAGAAAGCACCGAATATGATAACAGGCTAGtatatatggacaatttat
gi|3 : gtatttcaaagaaagttcaatccaatgtacttggaaaaaacgtcattctccaagatgacttagatatgtatatacatgtatatatatatatacattttgtattgaaaaaaagttaaattatatatttaataaagttcaattcccgcattaatttattgatatattgtgaaaaaaatccaatatccaagttaaacaatgtatttcaaagaatgtctagtatcaacataacctacagttacattgtaaacatcttcagaaaagtccagtctccgagttgaaatctgcatttcaaagaaagttccataactccatgaaaaaaatcaactattatctcagagctgccgtttaaagtttgaatacaaaattgaataaccaaatttaaccatactatatttcacagatgacatatatttaaaaagttcgaagtgaattgtgtatttcaaagaaagtaaggacgttcagcacatcgttgattcggagtcaatacactatagtgtatgtattttaaaaaaatgttcaatcaccttgtcgaattctgcaataatataaaaaAAATAA-AAATAAC----AGATTG---CTATATATGCACAAAG--------GTA-A--------AAT--------------CATTT-TG-TATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TG-CA-AGACAAAACA-AGTATTGCTATTGGA---A---A----CA----------GTTGT--TTGCAGCCTGCAGAATTCAAACCCGGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|4 : AAATAA-AAATAAC----AGATTG---CTATATATGCACAAAG--------GTA-A--------AAT--------------CATTT-TG-TATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TG-CA-AGACAAAACA-AGTATTGCTATTGGA---A---A----CA----------GTTGT--TTGCAGCCTGCAGAATTCAAACCCGGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|5 : AT--TTGCTGACCGCGGGATTCAAACCTGGGTCGCCTTGGCGA---AAATCAGTG---ATGTTTATTAGATAAATGAATAATGA-AAA-GATACGCAATTATTC-AATTATACAATAACAACATTACAAAGTACCGAAAAAGGGTCAAAGCTGGCTTATTTAAATCTCCAAACTAAATAAGTGTAATCGGTGATTCGGAGTTCAAACGAGGAACTATTTC--------CATAGTTTCTTGAAA---GTTACTATTTATAGAACATCCTAATATACTACGATAATTTGAAAGGAGACAACTAAACTAAGACAAATTTACCAAG
gi|7 : aatatG---CAAGATATGTGCAAAG--------ATATA--------AATGCATATATGGA---CATTT-T--TATTT-----G----TTGGAAACTA-ATTTTAT-GG-AT-A-----------------TG----AA------TGTCG-GAATAAAATA--GCACTGCCAT-GGA---A---ATGAACAAAA---AAGTGTCATTATTG-----TATGGGATTCAAACTCTGATCTCCCAAGAGA---TAATCTGCA--GA--TATAACAAACA-------A-TAA-AAATAAT---TATTTCTTTGGAAT-TGCAAT---AAAATTAg
gi|8 : aatggtaAAATAA-AAAGAAC-----GATTG---GTAGATATGTGCAAAA--------GGACA--------A-TAC------------CATATATG-GATAGTTCATGTCTTTTTTTAACC-TATTTTATAGG-AT-T-----GG--GGTTTA--TGGAGTAGATCTACTG-TA-AG-CAA--TC-AGTTTTGCTATTGAAGTGA---A----CAAAACAAA---AT--T--TTGCCGCCTGTGGGATTCGAGATCGGATCGCCTTGGTGA---CAATCGTTGGTGATTTatagagatggggaaatattatcgggtaggtacataaaggacaaaaacaaacaatattttaatttaggcct
gi|9 : attttaaaaaaattcaatctactagttaaatcatgcaaatagtgctaaACTAT-TTTTACAGG-AT-A-----GT--CGTTTG--TGGAGTAC------TG-TA-AGG-AAAAGT-GGCATTGCTAGTGAA---ACTAA----CAAAA---AC--GGTAT--TTGCCGTCCATGGGATTCGAATATGAA--ACTTA--CCA---CAGCCGG-----GCTTATTT--GATGAATGAATA-------------AGTAATTAATC-AAATATGCAATAACAAAATTAGAAAGTATCGAAAAAAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAAT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAACGAATATTCAGCATCCAAGACAATCTACATGTACATTGTATATATGAAAAAAATCCAGCATCCGAGTTGAAATCTCTCTTTCAATGAAAGTTCAATTTTCAAGATGATCTAGATGTATTTATAAATTTATAAAACAAAAATTTCCATGGAAAAGAACGATTATTATCTACGAGCTGACGTATACATTAAAAAAATACCTTAGTTTAATTATAGTATATTTCACAGAAAGTTAATCTCCCGGACAACATATATTATATTAAAAATGTTCAGTCTCGATATTATGTATTTCAAAGGAAGTT
Unaligned ( gi|10 ): TAAAAAAGTATAATTCTTGTCATGGGATTTGAACTCTGGATTTCCCAAGTGACAATCTGCAGATATAATACAAACGTCCAATTTTGGCAATGACAACCAATAAAAATAATATGGGGAGGATGGGGATGCAATAAAATTAGTAGAATAGGGGCAATATTATTCGGTAGGTAGGCAAAGGACAAACAATAATTTATTTTAGATCT
Unaligned ( gi|11 ): AATTTATATACTATATTTCAAAGAATGTTTAATCTCCAAGTTAATATATAAACCATATGTACATTGTATATATATAAAAAATACAGTTTCCTGGTTTAAATATGTTTTTCAAAGAGTTTTCAATCAAGTTAGGCTATATGCTTATAGCATATATCTTTAAA
Unaligned ( gi|15 ): TTAAAGTGAATTAAGAGAAGCTGTTAGAAGAAATAAATACATGGACACAGGGTTATCAGAATAGCTCACCTTAGGTAAGCTAAA
Unaligned ( gi|16 ): GATGCAATAAAATTAACAGAGATGGGGCAATACCGTCGGGTAGGTTGGTAAAAGACAAAACAATGTTTTATTCTAG
Unaligned ( gi|18 ): TCGTTTCAATCGAAAGTTAACAATAATGGACACAGGGCTTTGCTCAAGTAAGCTAAA
Unaligned ( gi|19 ): TCACTTGATATGTACAAATATATAAATGCATATATGGACAATCTTTCTTTTT
Unaligned ( gi|20 ): ATAAAGGACAAAACAAACAATATTTTAGTTTAGGC
Alignments
lowQualScore : 1 11111 111 2222222222222222222 77777777777777 222222222222222 222222222222222 1111111 5555555555555555555555555555555 111111 1 1 222 44444444
lowQualScore : 5 0 88888 7 222 5555555555555555555 00000000000000 4 777777777777777 3 7 111111111111111 77777 3333333 4 4 99 444 5 5555555555555555555555555555555 3 1 5 0 00 888 0 0 000000 77 6 6 88 3 22 6 1 0 1 1 3 1 1 7 6 333 88888888
lowQualScore : . . ..... . ... ................... .............. . ............... . . ............... ..... ....... . . .. ... . ............................... . . . . .. ... . . ...... .. . . .. . .. . . . . . . . . . . ... ........
lowQualScore : 0 1 44444 4 555 8888888888888888888 55555555555555 4 111111111111111 6 9 444444444444444 88888 8888888 4 4 22 555 9 6666666666666666666666666666666 0 4 0 2 88 888 2 9 444444 00 7 7 88 2 00 7 0 8 4 4 2 0 0 3 7 333 33333333
consensus : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGA----------TAT------AAATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGA---A---A----CAAAA---A---GTCGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
Reference ( family-722 ) : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGA----------TAT------AAATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGCA-AGACAAAANNAGTATTGCTANTGGA---A---A----CAAAA---A---GTCGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|1 : AA-AAAAAACCCAAAGATTGTTGCTATATATGTGCAAAGA----------TA-------AAATGCATATATG-----TATTT-TAATTTTT-----TTTTTTTGGAACCTAT-TTTTATAGG-----------T--TGTTTA--TGGAGTAC------TGTA-GGAAAAAGATAGTATTGCTTGTGAAATGA---A----CAAAA---
gi|10 : acaagaaattaaaatttaacttgaaacccttacgcataaggcccatttgtatacaatataaacacatttggttgatttgttcttattataaaaaatatttttagaaaataacaattatatccatttttgggcctctgctgacccttacgtatattaaattcccttaaagatccaatctcaactgtaatgattaaacgatgccccagtcatcaagatgtttgaaatattgttaaaataaatgtgaaaaacattatttcctgttttcccatagtattcatattcaattattacaatacacttactttcccaaatggaacctagcactttatttgaacaaacttgaaatctctattcatagagatcatttcaacatataaacaaatttggcttgtcggttctctaggagaatacttttgaaaaatcccaattttaccccttctggggcctctgctggatactactcatagggataatttatttccaatataaacgaatttagctgatcgaatcttgagaaaaagcgtttcaatgaaaacaaatgtaaactgataagtcactgggtcggagccaattttgacccccgggtcatggcttaaacaaatctgaaagaaactgattagatgatactgcatgcaaatatcaaagcgtcaggcccttgtacttttggaaaagaagatttgaaattttgaaacagataataccctggagcggggtcatatttgaccactgtgtcatgattttaacatacatgagagagcttcatgttacaatacttctcaccagattttgagaaaaatctttcaagcggtttcagagaagtcgtttgaagcaaaagttaacgacggacgacggacacagggctatcagttttgctcaggtgagctaaaacgaaatagttctgtccttgaattgaattacataagttaaaaataagtcagtcttcaagttcagttatctatttaaaaagtccatatccaagttatattaagtattccaaatgaagtccaatctccaaatgtatttgaaaaaataaatctctaacatgacctagatgtatatatgtgaacacgttcaatctccaagatgaattgtatgtttaaagtaagttcaatccccacgtttatttattgcacatattgtttattgcacatattgttaaataaagttgaataatatattaaagagtgtccaaactctaagacaatacacatgtgcattgtttatatcttgaaaaaacgtcaagtatccgagttataaatcggtttttctcagaatatccaatatgatctagttatatatatatatatatatattcataacaatatctccatgaaaaagtttaagcacacaattgaatagttaagttgaattataatatatttcacaaaatgttaatttcccatgaatttaaatagttcgatctaagttgaatgatgtatttcaaagaacgttttgactatgcgtcagagtcaacatgtatgaacatatatacatgattttttaaaatgttcaatctcttagttgaataatgcaaataatatttgGGGATTTGAACTCTGGATTTCCCAAGTGA---CAATCTGCA--GA--TATA--ATACAAACG
gi|12 : taaaaaagtataattcttgtcatAGAAC----GG-TTG---CTAGATATATGCAAAGA----------AAT------GAATGCATACGTGACAAATATTT-TG-T-TCA-----GTTTATTGAAAACTATCTTTTGTAGATAT-A-----AGAACCCTTGCATGGAATAT------TG-A-AG-TAAAAtccaattttggcaatgacaaccaataaaaataatatggggaggatggggatgcaataaaattagtagaataggggcaatattattcggtaggtaggcaaaggacaaacaataatttattttagatct
gi|13 : atcattgggtattATAATAAAGAAT-----GTTTG---CTGGATATATGCAAAGA----------AAT------CAAT---------------ATTT-T---------------TTTCGTAACC--TATTCTACAGG-AGAA-----GC--CGT---------GTAC------TATAGGGACAGA--CAGTGTTGCTAGT-GA---A---A----TAA
gi|14 : aaatATAACAAAGAAC----AG-TTG---CTGGATATTTGCAAAGA----------TAT------AAATG-------------CATTT-ttcaacaaaacaaa
gi|17 : tatctaattgtctcaaaatattttttaaaaaaaatATAA-GAACAGT----AGCTTGAA-CTAGATATGTTTAAAGA----------TAT------AAATGggacaaatctctgtttt
gi|2 : tAAATAACAAAGAGC-----GATTG---CCAGATATGTGCAAAGAATCAATTGCATATCTGGACAAAT-C------------TTTTT-TG-TTTTG-----TCTTCTTTGAAGC-ATATTTTATAAG-AT-ACTAATAT--AGTTTA--TGGAGTAC------TGCA-AGAAACAAGTAGTAT-ACTAGTGAA---A---A----GAATA---A----------TTGCCGCTTGTGTGACTCGAACCT-AGGTCACCTCGGCGGATGTATTCATTA--TATGTTTATTGGACAAATGAATA-TGACAAAT-ATAAGTAATTAGTC-AAATACACATTAACAAAATTAGAAAGCACCGAATATGATAACAGGCTAGtatatatggacaatttat
gi|3 : gtatttcaaagaaagttcaatccaatgtacttggaaaaaacgtcattctccaagatgacttagatatgtatatacatgtatatatatatatacattttgtattgaaaaaaagttaaattatatatttaataaagttcaattcccgcattaatttattgatatattgtgaaaaaaatccaatatccaagttaaacaatgtatttcaaagaatgtctagtatcaacataacctacagttacattgtaaacatcttcagaaaagtccagtctccgagttgaaatctgcatttcaaagaaagttccataactccatgaaaaaaatcaactattatctcagagctgccgtttaaagtttgaatacaaaattgaataaccaaatttaaccatactatatttcacagatgacatatatttaaaaagttcgaagtgaattgtgtatttcaaagaaagtaaggacgttcagcacatcgttgattcggagtcaatacactatagtgtatgtattttaaaaaaatgttcaatcaccttgtcgaattctgcaataatataaaaaAAATAA-AAATAAC----AGATTG---CTATATATGCACAAAGG----------TA-------AAAT--------------CATTT-TG-TATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TGCA-AGACAAAACAAGTATTGCTATTGGA---A---A----CA----------GTTGT--TTGCAGCCTGCAGAATTCAAACCC-GGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|4 : AAATAA-AAATAAC----AGATTG---CTATATATGCACAAAGG----------TA-------AAAT--------------CATTT-TG-TATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TGCA-AGACAAAACAAGTATTGCTATTGGA---A---A----CA----------GTTGT--TTGCAGCCTGCAGAATTCAAACCC-GGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|5 : T--TTGCTGACCGCGGGATTCAAACCT-GGGTCGCCTTGGCGA---AAATCAGTG---ATGTTTATTAGATAAATGAATAATGA-AAA-GATACGCAATTATTC-AATTATACAATAACAACATTACAAAGTACCGAAAAAGGGTCAAAGCTGGCTTATTTAAATCTCCAAACTAAATAAGTGTAATCGGTGATTCGGAGTTCAAACGAGGAACTATTTC--------CATAGTTTCTTGAAA---GTTACTATTTATAGAACATCCTAATATACTACGATAATTTGAAAGGAGACAACTAAACTAAGACAAATTTACCAAG
gi|7 : aatataG---CAAGATATGTGCAAAGA----------TAT------AAATGCATATATGGA---CATTT-T--TATTT-----G----TTGGAAACTA-ATTTTAT-GG-AT-A-----------------TG----AA------TGTC-GGAATAAAATAGCACTGCCA-TGGA---A---ATGAACAAAA---AAGTGTCATTATTG-----TATGGGATTCAAACTC-TGATCTCCCAAGAGA---TAATCTGCA--GA--TATAACAAACA-------A-TAA-AAATAAT---TATTTCTTTGGAAT-TGCAAT---AAAATTAg
gi|8 : aatggtaAAATAA-AAAGAAC-----GATTG---GTAGATATGTGCAAAAG----------GAC------AA-TAC------------CATATATG-GATAGTTCATGTCTTTTTTTAACC-TATTTTATAGG-AT-T-----GG--GGTTTA--TGGAGTAGATCTACTGTA-AG-CAA--TCAGTTTTGCTATTGAAGTGA---A----CAAAACAAA---AT--T--TTGCCGCCTGTGGGATTCGAGATC-GGATCGCCTTGGTGA---CAATCGTTGGTGATTTatagagatggggaaatattatcgggtaggtacataaaggacaaaaacaaacaatattttaatttaggcct
gi|9 : attttaaaaaaattcaatctactagttaaatcatgcaaatagtgctaaACTAT-TTTTACAGG-AT-A-----GT--CGTTTG--TGGAGTAC------TGTA-AGG-AAAAGTGGCATTGCTAGTGAA---ACTAA----CAAAA---ACG-GT-AT--TTGCCGTCCATGGGATTCGAATAT-GAA--ACTTA--CCA---CAGCCGG-----GCTTATTT--GATGAATGAATA-------------AGTAATTAATC-AAATATGCAATAACAAAATTAGAAAGTATCGAAAAAAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAACGAATATTCAGCATCCAAGACAATCTACATGTACATTGTATATATGAAAAAAATCCAGCATCCGAGTTGAAATCTCTCTTTCAATGAAAGTTCAATTTTCAAGATGATCTAGATGTATTTATAAATTTATAAAACAAAAATTTCCATGGAAAAGAACGATTATTATCTACGAGCTGACGTATACATTAAAAAAATACCTTAGTTTAATTATAGTATATTTCACAGAAAGTTAATCTCCCGGACAACATATATTATATTAAAAATGTTCAGTCTCGATATTATGTATTTCAAAGGAAGTT
Unaligned ( gi|11 ): AATTTATATACTATATTTCAAAGAATGTTTAATCTCCAAGTTAATATATAAACCATATGTACATTGTATATATATAAAAAATACAGTTTCCTGGTTTAAATATGTTTTTCAAAGAGTTTTCAATCAAGTTAGGCTATATGCTTATAGCATATATCTTTAAA
Unaligned ( gi|15 ): TTAAAGTGAATTAAGAGAAGCTGTTAGAAGAAATAAATACATGGACACAGGGTTATCAGAATAGCTCACCTTAGGTAAGCTAAA
Unaligned ( gi|16 ): GATGCAATAAAATTAACAGAGATGGGGCAATACCGTCGGGTAGGTTGGTAAAAGACAAAACAATGTTTTATTCTAG
Unaligned ( gi|18 ): TCGTTTCAATCGAAAGTTAACAATAATGGACACAGGGCTTTGCTCAAGTAAGCTAAA
Unaligned ( gi|19 ): TCACTTGATATGTACAAATATATAAATGCATATATGGACAATCTTTCTTTTT
Unaligned ( gi|20 ): ATAAAGGACAAAACAAACAATATTTTAGTTTAGGC
Alignments
lowQualScore : 1 11111 111 2222222222222222222 77777777777777 222222222222222 222222222222222 1111111 5555555555555555555555555555555 1 1 222 44444444
lowQualScore : 5 0 88888 7 222 5555555555555555555 00000000000000 4 777777777777777 3 7 111111111111111 77777 3333333 1 4 99 444 5 5555555555555555555555555555555 3 1 5 0 00 888 0 0 66 88 77 6 6 88 3 22 6 1 0 1 1 3 1 1 7 6 333 88888888
lowQualScore : . . ..... . ... ................... .............. . ............... . . ............... ..... ....... . . .. ... . ............................... . . . . .. ... . . .. .. .. . . .. . .. . . . . . . . . . . ... ........
lowQualScore : 0 1 44444 4 555 8888888888888888888 55555555555555 4 111111111111111 6 9 444444444444444 88888 8888888 4 4 22 888 6 6666666666666666666666666666666 0 4 0 2 88 888 4 2 99 11 00 7 7 88 2 00 7 0 8 4 4 2 0 0 3 7 333 33333333
consensus : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGA----------TAT------AAATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGA---A---A----CAAAA---A---GTCGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
Reference ( family-722 ) : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGA----------TAT------AAATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGA---A---A----CAAAA---A---GTCGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|1 : AA-AAAAAACCCAAAGATTGTTGCTATATATGTGCAAAGA----------TA-------AAATGCATATATG-----TATTT-TAATTTTT-----TTTTTTTGGAACCTAT-TTTTATAGG-----------T--TGTTTA--TGGAGTAC------TGTA-GGAAAAAGATAGTATTGCTTGTGAAATGA---A----CAAAA---
gi|10 : acaagaaattaaaatttaacttgaaacccttacgcataaggcccatttgtatacaatataaacacatttggttgatttgttcttattataaaaaatatttttagaaaataacaattatatccatttttgggcctctgctgacccttacgtatattaaattcccttaaagatccaatctcaactgtaatgattaaacgatgccccagtcatcaagatgtttgaaatattgttaaaataaatgtgaaaaacattatttcctgttttcccatagtattcatattcaattattacaatacacttactttcccaaatggaacctagcactttatttgaacaaacttgaaatctctattcatagagatcatttcaacatataaacaaatttggcttgtcggttctctaggagaatacttttgaaaaatcccaattttaccccttctggggcctctgctggatactactcatagggataatttatttccaatataaacgaatttagctgatcgaatcttgagaaaaagcgtttcaatgaaaacaaatgtaaactgataagtcactgggtcggagccaattttgacccccgggtcatggcttaaacaaatctgaaagaaactgattagatgatactgcatgcaaatatcaaagcgtcaggcccttgtacttttggaaaagaagatttgaaattttgaaacagataataccctggagcggggtcatatttgaccactgtgtcatgattttaacatacatgagagagcttcatgttacaatacttctcaccagattttgagaaaaatctttcaagcggtttcagagaagtcgtttgaagcaaaagttaacgacggacgacggacacagggctatcagttttgctcaggtgagctaaaacgaaatagttctgtccttgaattgaattacataagttaaaaataagtcagtcttcaagttcagttatctatttaaaaagtccatatccaagttatattaagtattccaaatgaagtccaatctccaaatgtatttgaaaaaataaatctctaacatgacctagatgtatatatgtgaacacgttcaatctccaagatgaattgtatgtttaaagtaagttcaatccccacgtttatttattgcacatattgtttattgcacatattgttaaataaagttgaataatatattaaagagtgtccaaactctaagacaatacacatgtgcattgtttatatcttgaaaaaacgtcaagtatccgagttataaatcggtttttctcagaatatccaatatgatctagttatatatatatatatatatattcataacaatatctccatgaaaaagtttaagcacacaattgaatagttaagttgaattataatatatttcacaaaatgttaatttcccatgaatttaaatagttcgatctaagttgaatgatgtatttcaaagaacgttttgactatgcgtcagagtcaacatgtatgaacatatatacatgattttttaaaatgttcaatctcttagttgaataatgcaaataatatttgGGGATTTGAACTCTGGATTTCCCAAGTGA---CAATCTGCA--GA--TATA--ATACAAACG
gi|12 : taaaaaagtataattcttgtcatAGAAC----GG-TTG---CTAGATATATGCAAAGA----------AAT------GAATGCATACGTGACAAATATTT-TG-T-TCA-----GTTTATTGAAAACTATCTTTTGTAGATAT-A-----AGAACCCTTGCATGGAATAT------TG-A-AG-TAAAAtccaattttggcaatgacaaccaataaaaataatatggggaggatggggatgcaataaaattagtagaataggggcaatattattcggtaggtaggcaaaggacaaacaataatttattttagatct
gi|13 : atcattgggtattATAATAAAGAAT-----GTTTG---CTGGATATATGCAAAGA----------AAT------CAAT---------------ATTT-T---------------TTTCGTAACC--TATTCTACAGG-AGAA-----GC--CGT---------GTAC------TATAGGGACAGA--CAGTGTTGCTAGT-GA---A---A----TAA
gi|14 : aaatATAACAAAGAAC----AG-TTG---CTGGATATTTGCAAAGA----------TAT------AAATG-------------CATTT-ttcaacaaaacaaa
gi|17 : tatctaattgtctcaaaatattttttaaaaaaaatATAA-GAACAGT----AGCTTGAA-CTAGATATGTTTAAAGA----------TAT------AAATGggacaaatctctgtttt
gi|2 : tAAATAACAAAGAGC-----GATTG---CCAGATATGTGCAAAGAATCAATTGCATATCTGGACAAAT-C------------TTTTT-TG-TTTTG-----TCTTCTTTGAAGC-ATATTTTATAAG-AT-ACTAATAT--AGTTTA--TGGAGTAC------TGCA-AGAAACAAGTAGTAT-ACTAGTGAA---A---A----GAATA---A----------TTGCCGCTTGTGTGACTCGAACCT-AGGTCACCTCGGCGGATGTATTCATTA--TATGTTTATTGGACAAATGAATA-TGACAAAT-ATAAGTAATTAGTC-AAATACACATTAACAAAATTAGAAAGCACCGAATATGATAACAGGCTAGtatatatggacaatttat
gi|3 : gtatttcaaagaaagttcaatccaatgtacttggaaaaaacgtcattctccaagatgacttagatatgtatatacatgtatatatatatatacattttgtattgaaaaaaagttaaattatatatttaataaagttcaattcccgcattaatttattgatatattgtgaaaaaaatccaatatccaagttaaacaatgtatttcaaagaatgtctagtatcaacataacctacagttacattgtaaacatcttcagaaaagtccagtctccgagttgaaatctgcatttcaaagaaagttccataactccatgaaaaaaatcaactattatctcagagctgccgtttaaagtttgaatacaaaattgaataaccaaatttaaccatactatatttcacagatgacatatatttaaaaagttcgaagtgaattgtgtatttcaaagaaagtaaggacgttcagcacatcgttgattcggagtcaatacactatagtgtatgtattttaaaaaaatgttcaatcaccttgtcgaattctgcaataatataaaaaAAATAA-AAATAAC----AGATTG---CTATATATGCACAAAGG----------TA-------AAAT--------------CATTT-TG-TATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TGCA-AGACAAAACAAGTATTGCTATTGGA---A---A----CA----------GTTGT--TTGCAGCCTGCAGAATTCAAACCC-GGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|4 : AAATAA-AAATAAC----AGATTG---CTATATATGCACAAAGG----------TA-------AAAT--------------CATTT-TG-TATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TGCA-AGACAAAACAAGTATTGCTATTGGA---A---A----CA----------GTTGT--TTGCAGCCTGCAGAATTCAAACCC-GGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|5 : T--TTGCTGACCGCGGGATTCAAACCT-GGGTCGCCTTGGCGA---AAATCAGTG---ATGTTTATTAGATAAATGAATAATGA-AAA-GATACGCAATTATTC-AATTATACAATAACAACATTACAAAGTACCGAAAAAGGGTCAAAGCTGGCTTATTTAAATCTCCAAACTAAATAAGTGTAATCGGTGATTCGGAGTTCAAACGAGGAACTATTTC--------CATAGTTTCTTGAAA---GTTACTATTTATAGAACATCCTAATATACTACGATAATTTGAAAGGAGACAACTAAACTAAGACAAATTTACCAAG
gi|7 : aatataG---CAAGATATGTGCAAAGA----------TAT------AAATGCATATATGGA---CATTT-T--TATTT-----G----TTGGAAACTA-ATTTTAT-GG-AT-A-----------------TG----AA------TGTC-GGAATAAAATAGCACTGCCA-TGGA---A---ATGAACAAAA---AAGTGTCATTATTG-----TATGGGATTCAAACTC-TGATCTCCCAAGAGA---TAATCTGCA--GA--TATAACAAACA-------A-TAA-AAATAAT---TATTTCTTTGGAAT-TGCAAT---AAAATTAg
gi|8 : aatggtaAAATAA-AAAGAAC-----GATTG---GTAGATATGTGCAAAAG----------GAC------AA-TAC------------CATATATG-GATAGTTCATGTCTTTTTTTAACC-TATTTTATAGG-AT-T-----GG--GGTTTA--TGGAGTAGATCTACTGTA-AG-CAA--TCAGTTTTGCTATTGAAGTGA---A----CAAAACAAA---AT--T--TTGCCGCCTGTGGGATTCGAGATC-GGATCGCCTTGGTGA---CAATCGTTGGTGATTTatagagatggggaaatattatcgggtaggtacataaaggacaaaaacaaacaatattttaatttaggcct
gi|9 : attttaaaaaaattcaatctactagttaaatcatgcaaatagtgctaaACTAT-TTTTACAGG-AT-A-----GT--CGTTTG--TGGAGTAC------TGTA-AGG-AAAAGTGGCATTGCTAGTGAA---ACTAA----CAAAA---ACG-GT-AT--TTGCCGTCCATGGGATTCGAATAT-GAA--ACTTA--CCA---CA---GCCG--GGCTTATTT--GATGAATGAATA-------------AGTAATTAATC-AAATATGCAATAACAAAATTAGAAAGTATCGAAAAAAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAAT
blockSeqs : T G T AA ATCAATTGCATATCTGGAC GCATACGTGACAAA A GGATAGTTCATGTC T C ATACTAATATA TTGCA GATCTAC T G AC AGT G AATGAACAAAAAAGTGTCATTA A T . ATG GT TG TT A . TA A CA G A C A T A T A A G AAC CTAATATA
blockSeqs : C A C . AAT GCATATATGGA . GTTTTGTCT T A TATAAGAAC TTA T C . AA ACA G GTGAACAAAACAAAATT A T . . . TT TC . . TA A CA . A C A T G A C . . . .
blockSeqs : C A A . AAT AC . GTATTGGCC T A AGAAGCC GTG C C . AC ACA T ACTAACAAAAACGGTAT T C . . . TT TC . . TA A AT . T . C A . A C
blockSeqs : . A A . TAT G . GTATTGGCC T G ACAGTC GTG C C . AC AAT T AACAGTTGT C T . . . TG TT . . G . CT . T . G A .
blockSeqs : . A A . TAT C . GTTCAGTT C G ACAGTC TTA A T . AA AGT T AACAGTTGT C T . . . TT AC . . . . AA . T .
blockSeqs : . . A . TAT . . TATTTG T A ATTGGG TTG A T . T TC G . C . . . CT T
blockSeqs : . . . . GAC . . . . A ATAGTC . A T . C C . . . . .
blockSeqs : . . . TA . . . . ATA . C . . G
blockSeqs : . TA
blockSeqCons : A**** *** NAT**************** GC************ GTATCGGCC****** ATAGTC********* AAACAAAAAAGNTGT**************** TT TC TA
originalCons : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGA----------TAT------AAATGC------------CATTT-TG-TATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGA---A---A----CAAAA---A---GTCGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
finalCons : AAATAA-AAAGAACA----GATTG---CTAGATATGTGCAAAGANAT----------------AAATGC------------CATTT-TGTATCGGCC------TTTTGGAAACTATATTTTATAGGATAGTC---------GTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGAAAACAAAAAAGNTGT----------------TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAACGAATATTCAGCATCCAAGACAATCTACATGTACATTGTATATATGAAAAAAATCCAGCATCCGAGTTGAAATCTCTCTTTCAATGAAAGTTCAATTTTCAAGATGATCTAGATGTATTTATAAATTTATAAAACAAAAATTTCCATGGAAAAGAACGATTATTATCTACGAGCTGACGTATACATTAAAAAAATACCTTAGTTTAATTATAGTATATTTCACAGAAAGTTAATCTCCCGGACAACATATATTATATTAAAAATGTTCAGTCTCGATATTATGTATTTCAAAGGAAGTT
Unaligned ( gi|11 ): AATTTATATACTATATTTCAAAGAATGTTTAATCTCCAAGTTAATATATAAACCATATGTACATTGTATATATATAAAAAATACAGTTTCCTGGTTTAAATATGTTTTTCAAAGAGTTTTCAATCAAGTTAGGCTATATGCTTATAGCATATATCTTTAAA
Unaligned ( gi|15 ): TTAAAGTGAATTAAGAGAAGCTGTTAGAAGAAATAAATACATGGACACAGGGTTATCAGAATAGCTCACCTTAGGTAAGCTAAA
Unaligned ( gi|16 ): GATGCAATAAAATTAACAGAGATGGGGCAATACCGTCGGGTAGGTTGGTAAAAGACAAAACAATGTTTTATTCTAG
Unaligned ( gi|18 ): TCGTTTCAATCGAAAGTTAACAATAATGGACACAGGGCTTTGCTCAAGTAAGCTAAA
Unaligned ( gi|19 ): TCACTTGATATGTACAAATATATAAATGCATATATGGACAATCTTTCTTTTT
Unaligned ( gi|20 ): ATAAAGGACAAAACAAACAATATTTTAGTTTAGGC
Alignments
lowQualScore : 1 11111 111 888888888888888888888888888888888888888888 111111111111 1111111 44444444444444444444444444 1 1 222 44444444
lowQualScore : 5 0 88888 7 222 1 8 999999999999999999999999999999999999999999 3 7 4 888888888888 77777 3333333 1 4 99 444 5 4 33333333333333333333333333 1 2 5 0 00 888 0 0 66 88 77 6 6 88 3 22 6 1 0 1 1 3 1 1 7 6 333 88888888
lowQualScore : . . ..... . ... . . .......................................... . . . ............ ..... ....... . . .. ... . . .......................... . . . . .. ... . . .. .. .. . . .. . .. . . . . . . . . . . ... ........
lowQualScore : 0 1 44444 4 555 0 7 000000000000000000000000000000000000000000 6 9 4 111111111111 88888 8888888 4 4 22 888 6 2 22222222222222222222222222 7 7 0 2 88 888 4 2 99 11 00 7 7 88 2 00 7 0 8 4 4 2 0 0 3 7 333 33333333
consensus : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGATATAAATGCATA--TG-----CA------TTT-T-GTATTG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGAAT-----A---ACAAAA-AAGNTGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
Reference ( family-722 ) : AAATAA-AAAGAAC----AGATTG---CTAGATATGTGCAAAGANATAAATGC------------CA------TTT-T-GTATCG-----GCCTTTTGGAAACTATATTTTATAGG-AT-A-----GT--CGTTTG--TGGAGTAN------TGTA-AGACAAAANTAGTATTGCTAGTGGAA------A---ACAAAA-AAGNTGT--TTGCCGCCCGCGGGATTCGAACCC-GGGTCGCCTAGGCGA---CAATCGGCG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTNNTC-AAATANACAATAACAAAATTAGAAAGTACCGAAAATAGTTCCAGGCTAGCTGNTTTATATCCCNAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|1 : AA-AAAAAACCCAAAGATTGTTGCTATATATGTGCAAAGATA-AAATGCATATATG-----TA------TTT-TAATTTTT-----TTTTTTTGGAACCTAT-TTTTATAG-----------GT--TGTTTA--TGGAGTAC------TGTA-GGAAAAAGATAGTATTGCTTGTGAAATG----A---ACAAAA-
gi|10 : acaagaaattaaaatttaacttgaaacccttacgcataaggcccatttgtatacaatataaacacatttggttgatttgttcttattataaaaaatatttttagaaaataacaattatatccatttttgggcctctgctgacccttacgtatattaaattcccttaaagatccaatctcaactgtaatgattaaacgatgccccagtcatcaagatgtttgaaatattgttaaaataaatgtgaaaaacattatttcctgttttcccatagtattcatattcaattattacaatacacttactttcccaaatggaacctagcactttatttgaacaaacttgaaatctctattcatagagatcatttcaacatataaacaaatttggcttgtcggttctctaggagaatacttttgaaaaatcccaattttaccccttctggggcctctgctggatactactcatagggataatttatttccaatataaacgaatttagctgatcgaatcttgagaaaaagcgtttcaatgaaaacaaatgtaaactgataagtcactgggtcggagccaattttgacccccgggtcatggcttaaacaaatctgaaagaaactgattagatgatactgcatgcaaatatcaaagcgtcaggcccttgtacttttggaaaagaagatttgaaattttgaaacagataataccctggagcggggtcatatttgaccactgtgtcatgattttaacatacatgagagagcttcatgttacaatacttctcaccagattttgagaaaaatctttcaagcggtttcagagaagtcgtttgaagcaaaagttaacgacggacgacggacacagggctatcagttttgctcaggtgagctaaaacgaaatagttctgtccttgaattgaattacataagttaaaaataagtcagtcttcaagttcagttatctatttaaaaagtccatatccaagttatattaagtattccaaatgaagtccaatctccaaatgtatttgaaaaaataaatctctaacatgacctagatgtatatatgtgaacacgttcaatctccaagatgaattgtatgtttaaagtaagttcaatccccacgtttatttattgcacatattgtttattgcacatattgttaaataaagttgaataatatattaaagagtgtccaaactctaagacaatacacatgtgcattgtttatatcttgaaaaaacgtcaagtatccgagttataaatcggtttttctcagaatatccaatatgatctagttatatatatatatatatatattcataacaatatctccatgaaaaagtttaagcacacaattgaatagttaagttgaattataatatatttcacaaaatgttaatttcccatgaatttaaatagttcgatctaagttgaatgatgtatttcaaagaacgttttgactatgcgtcagagtcaacatgtatgaacatatatacatgattttttaaaatgttcaatctcttagttgaataatgcaaataatatttgGGGATTTGAACTCTGGATTTCCCAAGTGA---CAATCTGCA--GA--TATA--ATACAAACG
gi|12 : taaaaaagtataattcttgtcatAGAAC----GG-TTG---CTAGATATATGCAAAGAAATGAATGCATACGTGACAAATA------TTT-T-GT-TCA-----GTTTATTGAAAACTATCTTTTGTAGATAT-A-----AGAACCCTTGCATGGAATAT------TG-A-AG-TAAAAtccaattttggcaatgacaaccaataaaaataatatggggaggatggggatgcaataaaattagtagaataggggcaatattattcggtaggtaggcaaaggacaaacaataatttattttagatct
gi|13 : atcattgggtattATAATAAAGAAT-----GTTTG---CTGGATATATGCAAAGAAATCAAT---------------A------TTT-T---------------TTTCGTAACC--TATTCTACAGG-AGAA-----GC--CGT---------GTAC------TATAGGGACAGA--CAGTGTTGCTAGTGAAATAATTCA---ACAAAA-
gi|14 : aaatATAACAAAGAAC----AG-TTG---CTGGATATTTGCAAAGATATAAATG-------------CA------TTT-caaa
gi|17 : tatctaattgtctcaaaatattttttaaaaaaaatATAA-GAACAGT----AGCTTGAA-CTAGATATGTTTAAAGATATAAATGggacaaatctctgtttt
gi|2 : tAAATAACAAAGAGC-----GATTG---CCAGATATGTGCAAAGAATCAATTGCATATCTGGA---CAAATCTTTTT-T-GTTTTG-----TCTTCTTTGAAGC-ATATTTTATAAG-AT-ACTAATAT--AGTTTA--TGGAGTAC------TGCA-AGAAACAAGTAGTAT-ACTAGTG-AA------A---AGAATA-A--------TTGCCGCTTGTGTGACTCGAACCT-AGGTCACCTCGGCGGATGTATTCATTA--TATGTTTATTGGACAAATGAATA-TGACAAAT-ATAAGTAATTAGTC-AAATACACATTAACAAAATTAGAAAGCACCGAATATGATAACAGGCTAGtatatatggacaatttat
gi|3 : gtatttcaaagaaagttcaatccaatgtacttggaaaaaacgtcattctccaagatgacttagatatgtatatacatgtatatatatatatacattttgtattgaaaaaaagttaaattatatatttaataaagttcaattcccgcattaatttattgatatattgtgaaaaaaatccaatatccaagttaaacaatgtatttcaaagaatgtctagtatcaacataacctacagttacattgtaaacatcttcagaaaagtccagtctccgagttgaaatctgcatttcaaagaaagttccataactccatgaaaaaaatcaactattatctcagagctgccgtttaaagtttgaatacaaaattgaataaccaaatttaaccatactatatttcacagatgacatatatttaaaaagttcgaagtgaattgtgtatttcaaagaaagtaaggacgttcagcacatcgttgattcggagtcaatacactatagtgtatgtattttaaaaaaatgttcaatcaccttgtcgaattctgcaataatataaaaaAAATAA-AAATAAC----AGATTG---CTATATATGCACAAAGGTA-AAAT--------------CA------TTT-T-GTATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TGCA-AGACAAAACAAGTATTGCTATTGGAA------A----CA------GTTGT--TTGCAGCCTGCAGAATTCAAACCC-GGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|4 : AAATAA-AAATAAC----AGATTG---CTATATATGCACAAAGGTA-AAAT--------------CA------TTT-T-GTATTG-----GCCTTTTGGGAACTATGTTTTATAGG-AC-A-----GT--CGTGTG--TAGAAAAA------TGCA-AGACAAAACAAGTATTGCTATTGGAA------A----CA------GTTGT--TTGCAGCCTGCAGAATTCAAACCC-GGGTTGCCTAGGCGA---CAATCGGTG--GATTTATATCAGACAAATGAATA-TGA-AAATAATAAGTAATTCATC-AAATAAACAATAA-AAAACTAAAAAATACCGAAAATAGTTCCA--CTAGCTGTTTTATATTCCAAAACTAAATTAGAACAATCGGCTATAAGGAACTCAACTATGGCATTATTTCAGGACGTTCTTCGGTTTTTGAAAGTTGTTACTATTAATAA---ATC--------CTACGAAACTTCGAAACGCGACTACTAAACATAGACAAATATGCTAAGATAGAAA
gi|5 : -AATATAT--TTGCTGACCGCGGGATTCAAACCT-GGGTCGCCTTGGCGA---AAATCAGTG---ATGTTTATTAGATAAATGAATAATGA-AAA-GATACGCAATTATTC-AATTATACAATAACAACATTACAAAGTACCGAAAAAGGGTCAAAGCTGGCTTATTTAAATCTCCAAACTAAATAAGTGTAATCGGTGATTCGGAGTTCAAACGAGGAACTATTTC--------CATAGTTTCTTGAAA---GTTACTATTTATAGAACATCCTAATATACTACGATAATTTGAAAGGAGACAACTAAACTAAGACAAATTTACCAAG
gi|7 : G---CAAGATATGTGCAAAGATATAAATGCATATATGGA---CA------TTT-T--TATTT-----G----TTGGAAACTA-ATTTTAT-GG-AT-A-----------------TG----AA------TGTC-GGAATAAAATAGCACTGCCA-TGGAA------ATGAACAAAA-AAG-TGTCATTATTGT--ATGGGATTCAAACTC-TGATCTCCCAAGAGA---TAATCTGCA--GA--TATAACAAACA-------A-TAA-AAATAAT---TATTTCTTTGGAAT-TGCAAT---AAAATTAg
gi|8 : aatggtaAAATAA-AAAGAAC-----GATTG---GTAGATATGTGCAAAAGGACAA-TAC------------CA------TATAT-GGATAGTTCATGTCTTTTTTTAACC-TATTTTATAGG-AT-T-----GG--GGTTTA--TGGAGTAGATCTACTGTA-AG-CAA--TCAGTTTTGCTATTGAAGTG----A---ACAAAACAAAAT-T--TTGCCGCCTGTGGGATTCGAGATC-GGATCGCCTTGGTGA---CAATCGTTGGTGATTTatagagatggggaaatattatcgggtaggtacataaaggacaaaaacaaacaatattttaatttaggcct
gi|9 : attttaaaaaaattcaatctactagttaaatcatgcaaatagtgctaaACTAT-TTTTACAGG-AT-A-----GT--CGTTTG--TGGAGTAC------TGTA-AGG-AAAAGTGGCATTGCTAGTGAAACT----A---ACAAAA-ACGGTAT--TTGCCGTCCATGGGATTCGAATAT-GAA--ACTTA--CCA---CA---GCCG--GGCTTATTT--GATGAATGAATA-------------AGTAATTAATC-AAATATGCAATAACAAAATTAGAAAGTATCGAAAAAAGTTCCAGGCTAGCTGATTTATATCTCCAAACTAAAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTCAACGAATATTCAGCATCCAAGACAATCTACATGTACATTGTATATATGAAAAAAATCCAGCATCCGAGTTGAAATCTCTCTTTCAATGAAAGTTCAATTTTCAAGATGATCTAGATGTATTTATAAATTTATAAAACAAAAATTTCCATGGAAAAGAACGATTATTATCTACGAGCTGACGTATACATTAAAAAAATACCTTAGTTTAATTATAGTATATTTCACAGAAAGTTAATCTCCCGGACAACATATATTATATTAAAAATGTTCAGTCTCGATATTATGTATTTCAAAGGAAGTT
Unaligned ( gi|11 ): AATTTATATACTATATTTCAAAGAATGTTTAATCTCCAAGTTAATATATAAACCATATGTACATTGTATATATATAAAAAATACAGTTTCCTGGTTTAAATATGTTTTTCAAAGAGTTTTCAATCAAGTTAGGCTATATGCTTATAGCATATATCTTTAAA
Unaligned ( gi|15 ): TTAAAGTGAATTAAGAGAAGCTGTTAGAAGAAATAAATACATGGACACAGGGTTATCAGAATAGCTCACCTTAGGTAAGCTAAA
Unaligned ( gi|16 ): GATGCAATAAAATTAACAGAGATGGGGCAATACCGTCGGGTAGGTTGGTAAAAGACAAAACAATGTTTTATTCTAG
Unaligned ( gi|18 ): TCGTTTCAATCGAAAGTTAACAATAATGGACACAGGGCTTTGCTCAAGTAAGCTAAA
Unaligned ( gi|19 ): TCACTTGATATGTACAAATATATAAATGCATATATGGACAATCTTTCTTTTT
Unaligned ( gi|20 ): ATAAAGGACAAAACAAACAATATTTTAGTTTAGGC