lowQualScore : 2 11 222222222222222 1111111111 3333333333333333333 1 222222222222222222222222222222222222222 1111 111 111 111 11 77777
lowQualScore : 6 0 11 000000000000000 0 1111111111 6666666666666666666 0 2 0 1 2 33 44 22 777777777777777777777777777777777777777 2222 2 666 0 888 3 44 222 3 11 77777
lowQualScore : . . .. ............... . .......... ................... . . . . . .. .. .. ....................................... .... . ... . ... . .. ... . .. .....
lowQualScore : 0 3 55 222222222222222 3 3333333333 9999999999999999999 6 2 0 9 2 11 00 88 333333333333333333333333333333333333333 2222 5 111 3 000 1 66 888 3 99 00000
consensus : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-CCTN-GTCAGCGGACAGTT---------TTCCCGCTTCCT-----TTA-CGTTA----A---ATCGCCCGCC-GACTTACTGA-GTGTCATATCTNG-CTA--TGAC-CTT-GTTAAA--T-------C-G-CC-AAACGAT---ACATGACANCATTTTT-C--ATT-GGTC-GATAGCGGTCACATGTACTTA-TTGTTA--C-T-A-AATTN-GAA-----AATAGAA
Reference ( gi|7 ) : ATCATCCTTTGCAGAATCTATATAATATGCTGCCTT-GTCAGCGGACAATT---------TTTCCACTTTCT-----TTA-TGTTA----A---GTTTCCCACA-GACTTATTGA-GTGTTATATCTTG-CTA--TGAC-CTT-GTTAAA--A-------C-A-CC-AAACAAT---ACATGACAACATTTTT-T--ATT-GGTC-ATTAGCAGTCACATGTCCCTA-TTGTTA--C-C-A-AATTT-GAATCTTGAATAGAA
gi|10 : TAATACGTT-CATTAGTCACCGGACAGTTACATGTATATTTCTA-TTTCT-------A-CGTTA----A---ACCATCCGTC-GACGAACCAA-GTGCCATGTCTGG-CTA--CGAC-CTT-G-TAAA--A-------T-AGCC-TGGCAAC---TCA--ACAA-----------------TC-GACAGTGGTCACATGTACTTA-TTGTTA--T-C-A-AAATT-AAA
gi|6 : TACGCTCCCTA-GTCAGCGGAAGATT---------GTCCCTCTTTCT-----CTT-CGTTA----G---ATCTCCCACT-GACTTATTGA-GTGTCATTTCTTG-CTA--TGAA-ATT-GTCAGA--T-------C-G-CC-ATACATT---ACACGACACTAATTTT-T--ATT-GGTC-AATAaccagaaatgacgttatgtatgcacccttgtg
gi|18 : gttaggttcatgagtcacACGCTATCTG-GTCAGTGGACAGTT---------GTCTTGTTTCCT-----TTG-CGTTAT---A---GCATCA-ACT-GACTAATGTA-ATGTCATATCTTG-CTG--TTTC-CTT-GTTGAA--T-------C-G-CCTAAATGAT---ATATATTGACACTTTattaccactaagtaacagtaacagaaacgcctcattatggtccttttgttaacaataatagttgtaaatgg
gi|3 : agtaacttcTT-GTCAGCGGACAATT---------TCCCCGC-TTCT-----TCACCATTA----A---ATTTACTGCT-GATTTATTGA-GTGTCATATCTTA-CTA--TGAT-TTT-TTCTAA--T-------C-A-CT-AAAAGAT---ACATTACTTAATTTTT-C--ATT-GGTT-AATAGCTGTCGCATAAACTTT-TTGTTAATT-C---AATTA-GAAACAT-AATAAAAggtagctaattgtaatagtt
gi|17 : gttctg-GTCAGCGGACAGTT---------TTCTTGCTACCA-----TCA-CTTTA----A---ACCATCCACT-GCCTCGGTGA-GTGCCATATCTTT-CTG--TGAT-CCT-GCTAAA--T-------C-G-CCAAAACAATA--ATATTAC-ACAGTTTA-TGCAAT-GGTT-GATAGAAATGACATATATTTA-TTGTaattatttttgcttacaggatcaaacaagtacatttttgtaagaggtattatgattggataacatttttgtaagaggtgttttgat
gi|8 : gtaTCATCGGACAGTT---------TCCCCGCAAGCA-----CTA-GGTTA----A---ACCACTTGCA-GAATTACTGA-GCGT-GTATTTCA-CTA--TGAC-CTG-GCTAAA--T-------C-G-CT-AAATGAT---ACATGACATAAGTTTC-C--ATC-GGTC-GATAGCGGTCATATAAACTTA-TTGTTA--T-C-A-AACCT-AGA-----AATAGAAa
gi|5 : GCTGAAAATT---------TCCTTGCTTTCTCGACTTTA-TGTTA----A---GTTGCACACC-AACATACTGA-GTGTAACATCTAG-CTA--TGAC-TTT-GTTAAA--G-------C-A-CC-TTACAAT---ACAAGACA----TTGT-C--ATT-GGTC-AATAGCAGTGACAGGTAC----TTGTTA--C-TAA-AATTA-GAAatgttgacataatcagatggttgttttttatcgtattttat
gi|9 : cctGCGGTTAATG---------TTATTGCTTCCT-----TTG-CGTTATAAAA---A----CCTTA-G-TTTACCAA-GTGACATATTTTG-TTACCTGAC-TTT----AAA--T-------CTG-CT-AAATGA----ACATGACAA---TTTT-T--ATT-TGTC-GGTAGCGGTCACGTTTACTTA-TTGTTT--C-T-A-AACTTAGAAacagaaatgaattattacatcgtttgtgtttactgttgtgactggttcagatgatcacttttctgttagtcacat
gi|11 : AATT---------CTTTCTCTTCCT-----TTA-CATCA----AAGAGTCGGCC----GACTAATTGT-GTGTGGTATCTTG-CTA--TTAC-TTA-GTTAAA--ATGCCTTAC-A-CC-AAACAAC---AC-------C-TTTTT-C--ATT-GGTC-AATAGTCATCACATGTTCTTA-CTGTTA--C-T-A-CATTT-atggactcatattaccatgtcagttatgttaacctgttctgatgtatttga
gi|13 : tctcattgacagctttatgttgagatttacaCT-----TTA-CATTT----A---ATTGCACGCT-GACTTAATGA-GTACCATTTCTTG-ATA--TAAA-ATT-GTCATA--T-------T-G-CC-AACCGAT---ACAT--------TTTT-C--ATT-GGTC-GATAGCAGTAAAATATATTTA-TTGTCA--CTT-A-AATT---AAT----AACAGAAataaacatactttttttt
gi|2 : caacGTTA----A---ATCGCACTCATGCCTTATTGA-GTGTT-TATTCAGACTA--TGAT-TTT-TTTAAA--T-------C-A-CT-TAAAGAC---ACATTACATCATTTTT-C--ATT-GGTTGATT-GCAGTCAC-TAACCTAA-TTGTAA--C-T-A-AAacgttttattacatcatttttttattacaggtataacgggtacatata
gi|1 : TACTGAAGTGTCAAATCTGG-CTA--C-ACACTT-GTTAAT--T-------C-A-CA-AATTGAT---ACA--AGAA-----TC-C--ATT-GGTT-AATGGCAGTCACATTTAC----TTGCTA--C-TAA-AATTA-GAAatgaaaaacagaagtgaagtattgttttctgttatgacagactcatatgatcacctttttgaaagccatattttgattggctaattgatagcaaggtgcttgcgttgatttttttttcattttctcgttaaaatcagaaatag
gi|15 : taaattaaatcattcgcATTGT-GTATAATTTCTAG-TTA--TGAC-ATT--TTAAA--A-------C-A-----GACGAA---A---AAGAGCATTTCTGC--ATT-TGTC-GATAGCGGTCAGGTATGCTTG-TTGTTA--C-G-A-Aacagatatctttttaattgtttattgttatgatgacatcatttctgtaaaccccatattgaatgtcctaatcaatagcaagacatgtgtaccaacataattctcaatgttcccacgaaaacaaaatagcataatttctgccatttgagcagagatctgaaa
gi|12 : ggacgttttctttttcttctttaaatcgccaatccggGA-GTGTAATATAGAG-ATA--AGAT-TTT-GTCAAA--A-------T-T-CT-TGGCAAT---A----ACACCATTTTT-TTCATT-GGTC-AATAGCAGTTACATG-ACTTA-CTGCTG--C-T-A-AATgagtacaaacaaaaatgattcattacgtcataaatatttaatattg
gi|23 : ctgctgactaaaGA-GTGTCATATCCTG-CTG--TGAC-TTT-GTTAAA--G-------C-A-CC-catcatcacatcctttttgtttgctgctatgacaggcttagatgatcaccttttgcaaattaaagtttgattgaataatcg
gi|19 : A-GTGTCATATCTCG-CTA--TCAC-CTG-GCTAAATAA-------C-T-TC-TTATGATCGTACATGATTCCATTTCT-C--ATT-GGTC-GGTAGCAGTCACATGTtt
gi|4 : ttaactgttatatttcctcgacattaaatagtagcaA-GTGTAATATCTTG--TA--TGAA-ATCAATTAAA--T-------C-G-CC-TAGCGAT---AAATGAGATCGCTTTT-C--ACT-GGTC-AATAGTGGTCAAGTGT-TCTATTTGTTA--C-T-ATAATTaatat
gi|21 : ttccttgctccccaccctgcgtttaattggctactaact-GTGCCATTTCTCG-CTC--TCAC-CTA-TTCAAA--T-------C-G-CT-A-----C---ACATGACACCGTTTTT-C--ACTGGGTC-GATAACGTTCACATGTaaaaacagaaatgtatagtctttttttttgttacgataggttcagaaagatatatattattaaaccataatttcattggcttatcaaaaacaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CATTGGTTGATAGCGGTCACATGTTCTATGACTAAAATGAGAAGCAAAAATGTTTTACTACATTATTTGTTATGAAAGTTTCAATTGCATTTCCTTTGGTTTGCAATAAATGACATGTGTTTCTAATTTCCCCCCTAAAATATAAACAGCACATGTTTTGAAATATTCTAGCAGAGGTGAGAA
Unaligned ( gi|16 ): TGCACTCTGTAGCCAGCGTCCAGCTTCCTCGTTACCTCCACGGTAATATATTCGCTAATGTTTTTAATTGCCATATCATTATGTGATATTGGTGAATCGCTTAACGATACGTTATTCTATTTTTCATTCGTCAATGATGGTTTAATGTATTTTGCTACTAATATTAGAA
Unaligned ( gi|20 ): TTATCACTTTTTGTAAGCCATATAATATTTTGATTGGCCAATCTATAGCAAAGCGACATAACTTTTTTTTCCCTATTAGAAATAGAAATA
Unaligned ( gi|22 ): TTGTTTACTGTTTTGACAGTCTCAAATAATAAATTTTATGTAAGCCTTATTTGGATTGGTTAATCGGTAGCAAGTTG
Alignments
lowQualScore : 22222 111111111 11111 1111111111
lowQualScore : 55555 1 222222222 0 11111 2 2 2 1111111111 2 1 3 2 2 0 1 2 22 33 2 4444 2 22 999999999999 0 0 666 2 22 2 2 33 444 2 2 2 2 2 0 77 77777 3 0
lowQualScore : ..... . ......... . ..... . . . .......... . . . . . . . . .. .. . .... . .. ............ . . ... . .. . . .. ... . . . . . . .. ..... . .
lowQualScore : 00000 0 333333333 2 33333 7 4 4 0000000000 2 7 2 1 0 3 0 0 88 99 0 2222 0 88 555555555555 9 4 555 1 99 1 1 11 111 7 7 7 7 7 6 33 77777 3 5
consensus : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT---------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-A-GTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----TC-GC--C--AAACGAT---ACATGACACCATTT-T--T-CATTGG-TCGATAGCGGTCACATGTA--CTTATTGTT-AC-T-A-A-ATTNAAA-----A-ACAGAA
Reference ( family-703 ) : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TNGTCAGCGGACAGTT---------TTCCCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-CGAC-TTACTG-A-GTGTCATATCTNG-CTA--TGAC-CTTG-TTAAA----TC-GC--C--AAACGAT---ACATGACANCATTT-T--T-CATTGG-TCGATAGCGGTCACATGTA--CTTATTGTT-AC-T-A-A-ATTNGAA-----A-ATAGAA
gi|1 : TTA-A-ATCATTCG-C-------TACTG-AAGTGTCAAATCTGG-CTA--C-ACACTTG-TTAAT----TC-AC--A--AATTGAT---ACAAGA-ATC----------CATTGG-TTAATGGCAGTCACATTTA--C---TTGCT-AC-TAA-A-ATTAGAA-----A-
gi|10 : taaaTAATACGTT-CAT-TAGTCACCGGACAGTTACATGTATATTTCTATTTC--------TA-CGTTA-A-ACCATCCG-T-CGAC-GAACCA-A-GTGCCATGTCTGG-CTA--CGAC-CTTG-TAAAA----TA-GC--C---------------TGGCAAC--------T-CAACAA-TCGACAGTGGTCACATGTA--CTTATTGTT-AT-C-A-A-AATTAAA-----A-CCAGAAcagatatctttttaattgtttattgttatgatgacatcatttctgtaaaccccatattgaatgtcctaatcaatagcaagacatgtgtaccaacataattctcaatgttcccacgaaaacaaaatagcataatttctgccatttgagcagagatctgaaa
gi|11 : AATT---------CTTTCTCTTCCT-----TTA-CATCA-A-AGAGTCGG-C-CGAC-TAATTG-T-GTGTGGTATCTTG-CTA--TTAC-TTAG-TTAAA----AT-GC--CTTACACCAA---ACA--ACACC-TTT-T--T-CATTGG-TCAATAGTCATCACATGTT--CTTACTGTT-AC-T-A-C-ATTTATA-----A-ACAatgacgttatgtatgcacccttgtg
gi|12 : tctcattgacagctttatgttgagatttacaCTG-C-TGAC-TAAA-G-A-GTGTAATATAGAG-ATA--AGAT-TTTG-TCAAAATTCTT-GG--C--AA-----------TAACACCATTT-TTTT-CATTGG-TCAATAGCAGTTACATG-A--CTTACTGCT-GC-T-A-A-ATtactttttttt
gi|13 : CCT-----TTA-CATTT-A-ATTGCACG-C-TGAC-TTAATG-A-GTACCATTTCTTG-ATA--TAAA-ATTG-TCATA----TT-GC--C--AACCGAT---A--------CATTT-T--T-CATTGG-TCGATAGCAGTAAAATATA--TTTATTGTC-ACTT-A-A-ATTA-AT-----A-ACAGAAcatcatcacatcctttttgtttgctgctatgacaggcttagatgatcaccttttgcaaattaaagtttgattgaataatcg
gi|14 : caa-CATTGG-TTGATAGCGGTCACATGTT--C----TATG-AC-T-A-A-AATGAGA-----A-GCAAAAacgttttattacatcatttttttattacaggtataacgggtacatata
gi|15 : GGAC-GTT---------TTCTT--TTTCT-----T---CTTTA-A-ATCGCCAATC-CGG----ATTG-T-GTATAATTTCTAG-TTA--TGAC-ATT--TTAAA--------A--C--AGACGAA---A---AAGAGCATTT-C--TGCATTTG-TCGATAGCGGTCAGGTATG--CTTGTTGTT-AC-G-A-A-atgttttactacattatttgttatgaaagtttcaattgcatttcctttggtttgcaataaatgacatgtgtttctaatttcccccctaaaatataaacagcacatgttttgaaatattctagcagaggtgagaa
gi|16 : TGCACT-C-TGTAGCCAGCGTCCAGCT---------TCCTCGTTACCT-----CCA-CGGTA-ATAT-ATTCG-C-TAATGTTTTTA-A-TTGCCATATCATT-ATG--TGAT-ATTG-GTGAA----TC-GC--T--TAACGAT---ACGTTATTCTATTT-T--T-CATTCG-TCAATGATGGTTTAATGTA--TT--TTGCT-AC-T-A-ATATTAGAA-----gagtacaaacaaaaatgattcattacgtcataaatatttaatattg
gi|17 : -TAGTCAGCGGACAGTT---------TTCTTGCTACCA-----TCA-CTTTA-A-ACCATCCA-C-TGCC-TCGGTG-A-GTGCCATATCTTT-CTG--TGAT-CCTG-CTAAA----TC-GC--CA-AAACAATA--ATATTACACAGTTTAT--G-CAATGG-TTGATAGAAATGACATATA--TTTATTGT
gi|18 : gACGCTAT-C-TGGTCAGTGGACAGTT---------GTCTTGTTTCCT-----TTG-CGTTA-T-AGCATCAA-C-TGAC-T-AATGTA-ATGTCATATCTTG-CTG--TTTC-CTTG-TTGAA----TC-GC--CT-AAATGAT---ATATATTGACACTT-T--a
gi|19 : agtaacttcTTCCT-----CGA-CATTA-A-ATAG-------------TAGCA-A-GTGTCATATCTCG-CTA--TCAC-CTGG-CTAAA----TA-ACTTC--TTATGATCGTACATGATTCCATTT-C--T-CATTGG-TCGGTAGCAGTCACATGTA--ggtagctaattgtaatagtt
gi|2 : ttaactgttatatGTTA-A-ATCGCACT-CATGCC-TTATTG-A-GTGTT-TATTCAGACTA--TGAT-TTTT-TTAAA----TC-AC--T--TAAAGAC---ACATTACATCATTT-T--T-CATTGG-TTGATTGCAGTCAC---TAACCTAATTGTA-AC-T-A-A-AATGAAA-----A-ACAGAAatat
gi|21 : -GTGCCATTTCTCG-CTC--TCAC-CTAT-TCAAA----TC-GC--T--A-----C---ACATGACACCGTTT-T--T-CACTGGGTCGATAACGTTCACATGTA--gtgaagtattgttttctgttatgacagactcatatgatcacctttttgaaagccatattttgattggctaattgatagcaaggtgcttgcgttgatttttttttcattttctcgttaaaatcagaaatag
gi|23 : G-A-GTGTCATATCCTG-CTG--TGAC-TTTG-TTAAA----GC-AC--C--
gi|3 : -TTGTCAGCGGACAATT---------TCCCCGCTT-CT-----TCACCATTA-A-ATTTACTG-C-TGAT-TTATTG-A-GTGTCATATCTTA-CTA--TGAT-TTTT-TCTAA----TC-AC--T--AAAAGAT---ACATTACTTAATTT-T--T-CATTGG-TTAATAGCTGTCGCATAAA--CTTTTTGTTAAT-T-C-A-ATTAGAA-----ACATAtt
gi|4 : gttctgT---------TCCTTGCTCCCCACC--CTG-CGTTT-A-ATTG---G-C-T-AC-TAACT--A-GTGTAATATCTTG--TA--TGAA-ATCAATTAAA----TC-GC--C--TAGCGAT---AAATGAGATCGCTT-T--T-CACTGG-TCAATAGTGGTCAAGTGTT--CTATTTGTT-AC-T-ATA-ATTA-AA-----A-ACAGAAataaaaaattatttttgcttacaggatcaaacaagtacatttttgtaagaggtattatgattggataacatttttgtaagaggtgttttgat
gi|5 : GCTGAAAATT---------TCCTTGCTTTCTCGACTTTA-TGTTA-A-GTTGCACA-C-CAAC-ATACTG-A-GTGTAACATCTAG-CTA--TGAC-TTTG-TTAAA----GC-AC--C--TTACAAT---ACAAGACA----TT-G--T-CATTGG-TCAATAGCAGTGACAGGTA--C---TTGTT-AC-T-A-A-AATTAGA-----A-ACAGAAatgtatagtctttttttttgttacgataggttcagaaagatatatattattaaaccataatttcattggcttatcaaaaacaa
gi|6 : cctTACGCT-C-CCTAGTCAGCGGAAGATT---------GTCCCTCTTTCT-----CTT-CGTTA-G-ATCTCCCA-C-TGAC-TTATTG-A-GTGTCATTTCTTG-CTA--TGAA-ATTG-TCAGA----TC-GC--C--ATACATT---ACACGACACTAATT-T--T-TATTGG-TCAATAatgaattattacatcgtttgtgtttactgttgtgactggttcagatgatcacttttctgttagtcacat
gi|7 : gttaggttcatgagtcacTAATATGCTGC-C-TTGTCAGCGGACAATT---------TTTCCACTTTCT-----TTA-TGTTA-A-GTTTCCCA-C-AGAC-TTATTG-A-GTGTTATATCTTG-CTA--TGAC-CTTG-TTAAA----AC-AC--C--AAACAAT---ACATGACAACATTT-T--T-TATTGG-TCATTAGCAGTCACATGTC--CCTATTGTT-AC-C-A-A-ATTTGAATCTTGA-ATAGAAattaccactaagtaacagtaacagaaacgcctcattatggtccttttgttaacaataatagttgtaaatgg
gi|8 : atcatcctttgcagaatctataTCATCGGACAGTT---------TCCCCGCAAGCA-----CTA-GGTTA-A-ACCACTTG-C-AGAA-TTACTG-A-GCGT-GTATTTCA-CTA--TGAC-CTGG-CTAAA----TC-GC--T--AAATGAT---ACATGACATAAGTT-T--C-CATCGG-TCGATAGCGGTCATATAAA--CTTATTGTT-AT-C-A-A-ACCTAGA-----A-ATAGAA
gi|9 : GCGGTTAATG---------TTATTGCTTCCT-----TTG-CGTTATA-AAAACCT----TAGT-TTACCA-A-GTGACATATTTTG-TTACCTGAC-TTT----AAA----TCTGC--T--AAATGA----ACATGACA--ATTT-T--T--ATTTG-TCGGTAGCGGTCACGTTTA--CTTATTGTT-TC-T-A-A-ACTTAGA-----A-ATGGAatgttgacataatcagatggttgttttttatcgtattttat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATCACTTTTTGTAAGCCATATAATATTTTGATTGGCCAATCTATAGCAAAGCGACATAACTTTTTTTTCCCTATTAGAAATAGAAATA
Unaligned ( gi|22 ): TTGTTTACTGTTTTGACAGTCTCAAATAATAAATTTTATGTAAGCCTTATTTGGATTGGTTAATCGGTAGCAAGTTG
Alignments
lowQualScore : 22222 1111111111 11111
lowQualScore : 66666 3333333333 11 11111 2 2 2 6666666 2 2 4 3 2 0 0 2 22 33 2 5555555 2 9999999999999 0 333 666 2 33 2 2 33 444 2 2 2 2 3 9 1 77777
lowQualScore : ..... .......... .. ..... . . . ....... . . . . . . . . .. .. . ....... . ............. . ... ... . .. . . .. ... . . . . . . . .....
lowQualScore : 99999 5555555555 44 33333 7 4 4 8888888 2 2 3 9 1 3 9 0 88 99 0 4444444 0 5555555555555 9 777 555 2 11 1 1 11 111 7 7 7 7 4 4 0 11111
consensus : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTT-AC-TA-A-ANTTAGA-----AACAGAA
Reference ( family-703 ) : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTT-AC-TA-A-ATTNAAA-----AACAGAA
gi|1 : TTA-A-ATCATTCG-C-T-AC-TGA----AGTGTCAAATCTGG-CTA--C-ACACTTG-TTAAT----T--C-ACA--AATTGA---T-ACA---AGA-ATC----------CATT-GGTTAATGGCAGTCACATTTA--C---TTGCT-AC-TA-A-AATTAGA-----AACAGA
gi|10 : taaaTAATACGTT-CAT-TAGTCACCGGACAGTTACATGTATATTTCT-ATTTC--------TA-CGTTA-A-ACCATCCG-T-CGAC-GAACCA-AGTGCCATGTCTGG-CTA--CGAC-CTTG-TAAAA----T--A-GCC-------------------TGGCAAC--------T-CAAC-AATCGACAGTGGTCACATGTA--CTTATTGTT-AT-CA-A-AATTAAA-----ACCAGAAtatctttttaattgtttattgttatgatgacatcatttctgtaaaccccatattgaatgtcctaatcaatagcaagacatgtgtaccaacataattctcaatgttcccacgaaaacaaaatagcataatttctgccatttgagcagagatctgaaa
gi|11 : AATT----------CTTTCTCTTCCT-----TTA-CATCA-A-AGAGTCGG-C-CGAC-TAATTG-TGTGTGGTATCTTG-CTA--TTAC-TTAG-TTAAA----A--T-GCCTTACACCA---A-ACA-----ACACC-TTT-T--T-CATT-GGTCAATAGTCATCACATGTT--CTTACTGTT-AC-TA-C-ATTTATA-----AACAatgacgttatgtatgcacccttgtg
gi|12 : tctcattgacagctttatgttgagatttacaCTG-C-TGAC-TAAA-G-AGTGTAATATAGAG-ATA--AGAT-TTTG-TCAAAATTCT--T-GGC--AA---------------TAACACCATTT-TTTT-CATT-GGTCAATAGCAGTTACATG-A--CTTACTGCT-GC-TA-A-ATtactttttttt
gi|13 : CCT-----TTA-CATTT-A-ATTGCACG-C-TGAC-TTAATG-AGTACCATTTCTTG-ATA--TAAA-ATTG-TCATA----T--T-GCC--AACCGA---T-A-----------CATTT-T--T-CATT-GGTCGATAGCAGTAAAATATA--TTTATTGTC-ACTTA-A-ATT-AAT-----AACAGAAcatcatcacatcctttttgtttgctgctatgacaggcttagatgatcaccttttgcaaattaaagtttgattgaataatcg
gi|14 : caa-CATT-GGTTGATAGCGGTCACATGTT--C----TATG-AC-TA-A-AATGAGA-----AGCAAAAacgttttattacatcatttttttattacaggtataacgggtacatata
gi|15 : GGAC-GTT----------TTCTT--TTTCT-----T---CTTTA-A-ATCGCCAATC-CGG----ATTG-TGTATAATTTCTAG-TTA--TGAC-ATT--TTAAA----------AC--AGACGA---A-A------AAGAGCATTT-C--TGCATT-TGTCGATAGCGGTCAGGTATG--CTTGTTGTT-AC-GA-A-GAGTACA-----AACAAAAatgttttactacattatttgttatgaaagtttcaattgcatttcctttggtttgcaataaatgacatgtgtttctaatttcccccctaaaatataaacagcacatgttttgaaatattctagcagaggtgagaa
gi|16 : TGCACT-C-TGTAGCCAGCGTCCAGCT----------TCCTCGTTACCT-----CCA-CGGTA-ATAT-ATTCG-C-TAATGTTTTTA-ATTGCCATATCATT-ATG--TGAT-ATTG-GTGAA----T--C-GCT--TAACGA---T-ACG---TTATTCTATTT-T--T-CATT-CGTCAATGATGGTTTAATGTA--TT--TTGCT-AC-TA-ATATTAGAA-----atgattcattacgtcataaatatttaatattg
gi|17 : -TAGTCAGCGGACAGTT----------TTCTTGCTACCA-----TCA-CTTTA-A-ACCATCCA-C-TGCC-TCGGTG-AGTGCCATATCTTT-CTG--TGAT-CCTG-CTAAA----T--C-GCCA-AAACAA---TAATA---TTACACAGTTTAT--G-CAAT-GGTTGATAGAAATGACATATA--TTTATTGT
gi|18 : gACGCTAT-C-TGGTCAGTGGACAGTT----------GTCTTGTTTCCT-----TTG-CGTTA-T-AGCATCAA-C-TGAC-T-AATGTAATGTCATATCTTG-CTG--TTTC-CTTG-TTGAA----T--C-GCCT-AAATGA---T-ATATATTGACACa
gi|19 : agtaacttcTTCCT-----CGA-CATTA-A-ATAG-------------TAGCA-AGTGTCATATCTCG-CTA--TCAC-CTGG-CTAAA----TAAC-TTC--TTATGATCGT-ACA---TGATTCCATTT-C--T-CATT-GGTCGGTAGCAGTCACATGTA--tttggtagctaattgtaatagtt
gi|2 : ttaactgttatatGTTA-A-ATCGCACT-CATGCC-TTATTG-AGTGTT-TATTCAGACTA--TGAT-TTTT-TTAAA----T--C-ACT--TAAAGA---C-ACA---TTACATCATTT-T--T-CATT-GGTTGATTGCAGTCAC---TAACCTAATTGTA-AC-TA-A-AATGAAA-----AACAGAAatat
gi|21 : GTGCCATTTCTCG-CTC--TCAC-CTAT-TCAAA----T--C-GCT--A--------C-ACA---TGACACCGTTT-T--T-CACTGGGTCGATAACGTTCACATGTA--gtgaagtattgttttctgttatgacagactcatatgatcacctttttgaaagccatattttgattggctaattgatagcaaggtgcttgcgttgatttttttttcattttctcgttaaaatcagaaatag
gi|23 : G-AGTGTCATATCCTG-CTG--TGAC-TTTG-TTAAA----G--C-ACC--
gi|3 : GTCAGCGGACAATT----------TCCCCGCTT-CT-----TCACCATTA-A-ATTTACTG-C-TGAT-TTATTG-AGTGTCATATCTTA-CTA--TGAT-TTTT-TCTAA----T--C-ACT--AAAAGA---T-ACA---TTACTTAATTT-T--T-CATT-GGTTAATAGCTGTCGCATAAA--CTTTTTGTTAAT-TC-A-ATT-AGA-----AACATAAtt
gi|4 : gttctgttT----------TCCTTGCTCCCCACC--CTG-CGTTT-A-ATTGGCTA-C-TAAC-T------AGTGTAATATCTTG--TA--TGAA-ATCAATTAAA----T--C-GCC--TAGCGA---T-AAA---TGAGATCGCTT-T--T-CACT-GGTCAATAGTGGTCAAGTGTT--CTATTTGTT-AC-TATA-ATT-AAA-----AACAGAAtaaaaaattatttttgcttacaggatcaaacaagtacatttttgtaagaggtattatgattggataacatttttgtaagaggtgttttgat
gi|5 : GCTGAAAATT----------TCCTTGCTTTCTCGACTTTA-TGTTA-A-GTTGCACA-C-CAAC-ATACTG-AGTGTAACATCTAG-CTA--TGAC-TTTG-TTAAA----G--C-ACC--TTACAA---T-ACA---AGACA----TT-G--T-CATT-GGTCAATAGCAGTGACAGGTA--C---TTGTT-AC-TA-A-AATTAGA-----AACAGAAatgtatagtctttttttttgttacgataggttcagaaagatatatattattaaaccataatttcattggcttatcaaaaacaa
gi|6 : cctTACGCT-C-CCTAGTCAGCGGAAGATT----------GTCCCTCTTTCT-----CTT-CGTTA-G-ATCTCCCA-C-TGAC-TTATTG-AGTGTCATTTCTTG-CTA--TGAA-ATTG-TCAGA----T--C-GCC--ATACAT---T-ACA---CGACACTAATT-T--T-TATT-GGTCAATAatgaattattacatcgtttgtgtttactgttgtgactggttcagatgatcacttttctgttagtcacat
gi|7 : gttaggttcatgagtcacTAATATGCTGC-C-TTGTCAGCGGACAATT----------TTTCCACTTTCT-----TTA-TGTTA-A-GTTTCCCA-C-AGAC-TTATTG-AGTGTTATATCTTG-CTA--TGAC-CTTG-TTAAA----A--C-ACC--AAACAA---T-ACA---TGACAACATTT-T--T-TATT-GGTCATTAGCAGTCACATGTC--CCTATTGTT-AC-CA-A-ATTTGAATCTTGAATAGAAattaccactaagtaacagtaacagaaacgcctcattatggtccttttgttaacaataatagttgtaaatgg
gi|8 : atcatcctttgcagaatctataTCATCGGACAGTT----------TCCCCGCAAGCA-----CTA-GGTTA-A-ACCACTTG-C-AGAA-TTACTG-AGCGT-GTATTTCA-CTA--TGAC-CTGG-CTAAA----T--C-GCT--AAATGA---T-ACA---TGACATAAGTT-T--C-CATC-GGTCGATAGCGGTCATATAAA--CTTATTGTT-AT-CA-A-ACCTAGA-----AATAGAA
gi|9 : GCGGTTAATG----------TTATTGCTTCCT-----TTG-CGTTATA-AAAACCT----TAGT-TTACCA-AGTGACATATTTTG-TTACCTGAC-TTT----AAA----T--CTGCT--AAATGA-----ACA---TGACA--ATTT-T--T--ATT-TGTCGGTAGCGGTCACGTTTA--CTTATTGTT-TC-TA-A-ACTTAGA-----AATGGAatgttgacataatcagatggttgttttttatcgtattttat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATCACTTTTTGTAAGCCATATAATATTTTGATTGGCCAATCTATAGCAAAGCGACATAACTTTTTTTTCCCTATTAGAAATAGAAATA
Unaligned ( gi|22 ): TTGTTTACTGTTTTGACAGTCTCAAATAATAAATTTTATGTAAGCCTTATTTGGATTGGTTAATCGGTAGCAAGTTG
Alignments
lowQualScore : 22222 1111111111 11111
lowQualScore : 66666 3333333333 11 11111 2 2 2 6666666 2 2 4 3 2 0 0 2 22 33 2 5555555 2 9999999999999 0 333 666 2 33 2 2 33 444 1
lowQualScore : ..... .......... .. ..... . . . ....... . . . . . . . . .. .. . ....... . ............. . ... ... . .. . . .. ... .
lowQualScore : 99999 5555555555 44 33333 7 4 4 8888888 2 2 3 9 1 3 9 0 88 99 0 4444444 0 5555555555555 9 777 555 2 11 1 1 11 111 0
consensus : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
Reference ( family-703 ) : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAANTTAGAAACAGAA
gi|1 : TTA-A-ATCATTCG-C-T-AC-TGA----AGTGTCAAATCTGG-CTA--C-ACACTTG-TTAAT----T--C-ACA--AATTGA---T-ACA---AGA-ATC----------CATT-GGTTAATGGCAGTCACATTTA--C---TTGCTACTAAAATTAGAAACAGA
gi|10 : taaaTAATACGTT-CAT-TAGTCACCGGACAGTTACATGTATATTTCT-ATTTC--------TA-CGTTA-A-ACCATCCG-T-CGAC-GAACCA-AGTGCCATGTCTGG-CTA--CGAC-CTTG-TAAAA----T--A-GCC-------------------TGGCAAC--------T-CAAC-AATCGACAGTGGTCACATGTA--CTTATTGTTATCAAAATTAAAACCAGAAtatctttttaattgtttattgttatgatgacatcatttctgtaaaccccatattgaatgtcctaatcaatagcaagacatgtgtaccaacataattctcaatgttcccacgaaaacaaaatagcataatttctgccatttgagcagagatctgaaa
gi|11 : AATT----------CTTTCTCTTCCT-----TTA-CATCA-A-AGAGTCGG-C-CGAC-TAATTG-TGTGTGGTATCTTG-CTA--TTAC-TTAG-TTAAA----A--T-GCCTTACACCA---A-ACA-----ACACC-TTT-T--T-CATT-GGTCAATAGTCATCACATGTT--CTTACTGTTACTACATTTATAAACAatgacgttatgtatgcacccttgtg
gi|12 : tctcattgacagctttatgttgagatttacaCTG-C-TGAC-TAAA-G-AGTGTAATATAGAG-ATA--AGAT-TTTG-TCAAAATTCT--T-GGC--AA---------------TAACACCATTT-TTTT-CATT-GGTCAATAGCAGTTACATG-A--CTTACTGCTGCTAAAtactttttttt
gi|13 : CCT-----TTA-CATTT-A-ATTGCACG-C-TGAC-TTAATG-AGTACCATTTCTTG-ATA--TAAA-ATTG-TCATA----T--T-GCC--AACCGA---T-A-----------CATTT-T--T-CATT-GGTCGATAGCAGTAAAATATA--TTTATTGTCACTTAAATTAATAACAGAAtcatcatcacatcctttttgtttgctgctatgacaggcttagatgatcaccttttgcaaattaaagtttgattgaataatcg
gi|14 : caa-CATT-GGTTGATAGCGGTCACATGTT--C----TATGACTAAAATGAGAAGCAAAAacgttttattacatcatttttttattacaggtataacgggtacatata
gi|15 : GGAC-GTT----------TTCTT--TTTCT-----T---CTTTA-A-ATCGCCAATC-CGG----ATTG-TGTATAATTTCTAG-TTA--TGAC-ATT--TTAAA----------AC--AGACGA---A-A------AAGAGCATTT-C--TGCATT-TGTCGATAGCGGTCAGGTATG--CTTGTTGTTACGAAGAGTACAAACAAAAatgttttactacattatttgttatgaaagtttcaattgcatttcctttggtttgcaataaatgacatgtgtttctaatttcccccctaaaatataaacagcacatgttttgaaatattctagcagaggtgagaa
gi|16 : TGCACT-C-TGTAGCCAGCGTCCAGCT----------TCCTCGTTACCT-----CCA-CGGTA-ATAT-ATTCG-C-TAATGTTTTTA-ATTGCCATATCATT-ATG--TGAT-ATTG-GTGAA----T--C-GCT--TAACGA---T-ACG---TTATTCTATTT-T--T-CATT-CGTCAATGATGGTTTAATGTA--TT--TTGCTACTAATATTAGAAatgattcattacgtcataaatatttaatattg
gi|17 : -TAGTCAGCGGACAGTT----------TTCTTGCTACCA-----TCA-CTTTA-A-ACCATCCA-C-TGCC-TCGGTG-AGTGCCATATCTTT-CTG--TGAT-CCTG-CTAAA----T--C-GCCA-AAACAA---TAATA---TTACACAGTTTAT--G-CAAT-GGTTGATAGAAATGACATATA--TTTATTGT
gi|18 : gACGCTAT-C-TGGTCAGTGGACAGTT----------GTCTTGTTTCCT-----TTG-CGTTA-T-AGCATCAA-C-TGAC-T-AATGTAATGTCATATCTTG-CTG--TTTC-CTTG-TTGAA----T--C-GCCT-AAATGA---T-ATATATTGACACa
gi|19 : agtaacttcTTCCT-----CGA-CATTA-A-ATAG-------------TAGCA-AGTGTCATATCTCG-CTA--TCAC-CTGG-CTAAA----TAAC-TTC--TTATGATCGT-ACA---TGATTCCATTT-C--T-CATT-GGTCGGTAGCAGTCACATGTA--tttggtagctaattgtaatagtt
gi|2 : ttaactgttatatGTTA-A-ATCGCACT-CATGCC-TTATTG-AGTGTT-TATTCAGACTA--TGAT-TTTT-TTAAA----T--C-ACT--TAAAGA---C-ACA---TTACATCATTT-T--T-CATT-GGTTGATTGCAGTCAC---TAACCTAATTGTAACTAAAATGAAAAACAGAAatat
gi|21 : GTGCCATTTCTCG-CTC--TCAC-CTAT-TCAAA----T--C-GCT--A--------C-ACA---TGACACCGTTT-T--T-CACTGGGTCGATAACGTTCACATGTA--gtgaagtattgttttctgttatgacagactcatatgatcacctttttgaaagccatattttgattggctaattgatagcaaggtgcttgcgttgatttttttttcattttctcgttaaaatcagaaatag
gi|23 : G-AGTGTCATATCCTG-CTG--TGAC-TTTG-TTAAA----G--C-ACC--
gi|3 : GTCAGCGGACAATT----------TCCCCGCTT-CT-----TCACCATTA-A-ATTTACTG-C-TGAT-TTATTG-AGTGTCATATCTTA-CTA--TGAT-TTTT-TCTAA----T--C-ACT--AAAAGA---T-ACA---TTACTTAATTT-T--T-CATT-GGTTAATAGCTGTCGCATAAA--CTTTTTGTTAATTCAATTAGAAACATAAtt
gi|4 : gttctgttT----------TCCTTGCTCCCCACC--CTG-CGTTT-A-ATTGGCTA-C-TAAC-T------AGTGTAATATCTTG--TA--TGAA-ATCAATTAAA----T--C-GCC--TAGCGA---T-AAA---TGAGATCGCTT-T--T-CACT-GGTCAATAGTGGTCAAGTGTT--CTATTTGTTACTATAATTAAAAACAGAAtaaaaaattatttttgcttacaggatcaaacaagtacatttttgtaagaggtattatgattggataacatttttgtaagaggtgttttgat
gi|5 : GCTGAAAATT----------TCCTTGCTTTCTCGACTTTA-TGTTA-A-GTTGCACA-C-CAAC-ATACTG-AGTGTAACATCTAG-CTA--TGAC-TTTG-TTAAA----G--C-ACC--TTACAA---T-ACA---AGACA----TT-G--T-CATT-GGTCAATAGCAGTGACAGGTA--C---TTGTTACTAAAATTAGAAACAGAAatgtatagtctttttttttgttacgataggttcagaaagatatatattattaaaccataatttcattggcttatcaaaaacaa
gi|6 : cctTACGCT-C-CCTAGTCAGCGGAAGATT----------GTCCCTCTTTCT-----CTT-CGTTA-G-ATCTCCCA-C-TGAC-TTATTG-AGTGTCATTTCTTG-CTA--TGAA-ATTG-TCAGA----T--C-GCC--ATACAT---T-ACA---CGACACTAATT-T--T-TATT-GGTCAATAatgaattattacatcgtttgtgtttactgttgtgactggttcagatgatcacttttctgttagtcacat
gi|7 : gttaggttcatgagtcacTAATATGCTGC-C-TTGTCAGCGGACAATT----------TTTCCACTTTCT-----TTA-TGTTA-A-GTTTCCCA-C-AGAC-TTATTG-AGTGTTATATCTTG-CTA--TGAC-CTTG-TTAAA----A--C-ACC--AAACAA---T-ACA---TGACAACATTT-T--T-TATT-GGTCATTAGCAGTCACATGTC--CCTATTGTTACCAAATTT-GAAattaccactaagtaacagtaacagaaacgcctcattatggtccttttgttaacaataatagttgtaaatgg
gi|8 : atcatcctttgcagaatctataTCATCGGACAGTT----------TCCCCGCAAGCA-----CTA-GGTTA-A-ACCACTTG-C-AGAA-TTACTG-AGCGT-GTATTTCA-CTA--TGAC-CTGG-CTAAA----T--C-GCT--AAATGA---T-ACA---TGACATAAGTT-T--C-CATC-GGTCGATAGCGGTCATATAAA--CTTATTGTTATCAAACCTAGAAATAGAAtcttgaatagaa
gi|9 : GCGGTTAATG----------TTATTGCTTCCT-----TTG-CGTTATA-AAAACCT----TAGT-TTACCA-AGTGACATATTTTG-TTACCTGAC-TTT----AAA----T--CTGCT--AAATGA-----ACA---TGACA--ATTT-T--T--ATT-TGTCGGTAGCGGTCACGTTTA--CTTATTGTTTCTAAACTTAGAAATGGAatgttgacataatcagatggttgttttttatcgtattttat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATCACTTTTTGTAAGCCATATAATATTTTGATTGGCCAATCTATAGCAAAGCGACATAACTTTTTTTTCCCTATTAGAAATAGAAATA
Unaligned ( gi|22 ): TTGTTTACTGTTTTGACAGTCTCAAATAATAAATTTTATGTAAGCCTTATTTGGATTGGTTAATCGGTAGCAAGTTG
Alignments
lowQualScore : 22222 1111111111 11111
lowQualScore : 66666 3333333333 11 11111 2 2 2 6666666 2 2 4 3 2 0 0 2 22 33 2 5555555 2 9999999999999 0 333 666 2 33 2 2 33 444
lowQualScore : ..... .......... .. ..... . . . ....... . . . . . . . . .. .. . ....... . ............. . ... ... . .. . . .. ...
lowQualScore : 99999 5555555555 44 33333 7 4 4 8888888 2 2 3 9 1 3 9 0 88 99 0 4444444 0 5555555555555 9 777 555 2 11 1 1 11 111
consensus : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
Reference ( family-703 ) : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
gi|1 : TTA-A-ATCATTCG-C-T-AC-TGA----AGTGTCAAATCTGG-CTA--C-ACACTTG-TTAAT----T--C-ACA--AATTGA---T-ACA---AGA-ATC----------CATT-GGTTAATGGCAGTCACATTTA--C---TTGCTACTAAAATTAGAAACAGA
gi|10 : taaaTAATACGTT-CAT-TAGTCACCGGACAGTTACATGTATATTTCT-ATTTC--------TA-CGTTA-A-ACCATCCG-T-CGAC-GAACCA-AGTGCCATGTCTGG-CTA--CGAC-CTTG-TAAAA----T--A-GCC-------------------TGGCAAC--------T-CAAC-AATCGACAGTGGTCACATGTA--CTTATTGTTATCAAAATTAAAACCAGAAtatctttttaattgtttattgttatgatgacatcatttctgtaaaccccatattgaatgtcctaatcaatagcaagacatgtgtaccaacataattctcaatgttcccacgaaaacaaaatagcataatttctgccatttgagcagagatctgaaa
gi|11 : AATT----------CTTTCTCTTCCT-----TTA-CATCA-A-AGAGTCGG-C-CGAC-TAATTG-TGTGTGGTATCTTG-CTA--TTAC-TTAG-TTAAA----A--T-GCCTTACACCA---A-ACA-----ACACC-TTT-T--T-CATT-GGTCAATAGTCATCACATGTT--CTTACTGTTACTACATTTATAAACAatgacgttatgtatgcacccttgtg
gi|12 : tctcattgacagctttatgttgagatttacaCTG-C-TGAC-TAAA-G-AGTGTAATATAGAG-ATA--AGAT-TTTG-TCAAAATTCT--T-GGC--AA---------------TAACACCATTT-TTTT-CATT-GGTCAATAGCAGTTACATG-A--CTTACTGCTGCTAAAtactttttttt
gi|13 : CCT-----TTA-CATTT-A-ATTGCACG-C-TGAC-TTAATG-AGTACCATTTCTTG-ATA--TAAA-ATTG-TCATA----T--T-GCC--AACCGA---T-A-----------CATTT-T--T-CATT-GGTCGATAGCAGTAAAATATA--TTTATTGTCACTTAAATTAATAACAGAAtcatcatcacatcctttttgtttgctgctatgacaggcttagatgatcaccttttgcaaattaaagtttgattgaataatcg
gi|14 : caa-CATT-GGTTGATAGCGGTCACATGTT--C----TATGACTAAAATGAGAAGCAAAAacgttttattacatcatttttttattacaggtataacgggtacatata
gi|15 : GGAC-GTT----------TTCTT--TTTCT-----T---CTTTA-A-ATCGCCAATC-CGG----ATTG-TGTATAATTTCTAG-TTA--TGAC-ATT--TTAAA----------AC--AGACGA---A-A------AAGAGCATTT-C--TGCATT-TGTCGATAGCGGTCAGGTATG--CTTGTTGTTACGAAGAGTACAAACAAAAatgttttactacattatttgttatgaaagtttcaattgcatttcctttggtttgcaataaatgacatgtgtttctaatttcccccctaaaatataaacagcacatgttttgaaatattctagcagaggtgagaa
gi|16 : TGCACT-C-TGTAGCCAGCGTCCAGCT----------TCCTCGTTACCT-----CCA-CGGTA-ATAT-ATTCG-C-TAATGTTTTTA-ATTGCCATATCATT-ATG--TGAT-ATTG-GTGAA----T--C-GCT--TAACGA---T-ACG---TTATTCTATTT-T--T-CATT-CGTCAATGATGGTTTAATGTA--TT--TTGCTACTAATATTAGAAatgattcattacgtcataaatatttaatattg
gi|17 : -TAGTCAGCGGACAGTT----------TTCTTGCTACCA-----TCA-CTTTA-A-ACCATCCA-C-TGCC-TCGGTG-AGTGCCATATCTTT-CTG--TGAT-CCTG-CTAAA----T--C-GCCA-AAACAA---TAATA---TTACACAGTTTAT--G-CAAT-GGTTGATAGAAATGACATATA--TTTATTGT
gi|18 : gACGCTAT-C-TGGTCAGTGGACAGTT----------GTCTTGTTTCCT-----TTG-CGTTA-T-AGCATCAA-C-TGAC-T-AATGTAATGTCATATCTTG-CTG--TTTC-CTTG-TTGAA----T--C-GCCT-AAATGA---T-ATATATTGACACa
gi|19 : agtaacttcTTCCT-----CGA-CATTA-A-ATAG-------------TAGCA-AGTGTCATATCTCG-CTA--TCAC-CTGG-CTAAA----TAAC-TTC--TTATGATCGT-ACA---TGATTCCATTT-C--T-CATT-GGTCGGTAGCAGTCACATGTA--tttggtagctaattgtaatagtt
gi|2 : ttaactgttatatGTTA-A-ATCGCACT-CATGCC-TTATTG-AGTGTT-TATTCAGACTA--TGAT-TTTT-TTAAA----T--C-ACT--TAAAGA---C-ACA---TTACATCATTT-T--T-CATT-GGTTGATTGCAGTCAC---TAACCTAATTGTAACTAAAATGAAAAACAGAAatat
gi|21 : GTGCCATTTCTCG-CTC--TCAC-CTAT-TCAAA----T--C-GCT--A--------C-ACA---TGACACCGTTT-T--T-CACTGGGTCGATAACGTTCACATGTA--gtgaagtattgttttctgttatgacagactcatatgatcacctttttgaaagccatattttgattggctaattgatagcaaggtgcttgcgttgatttttttttcattttctcgttaaaatcagaaatag
gi|23 : G-AGTGTCATATCCTG-CTG--TGAC-TTTG-TTAAA----G--C-ACC--
gi|3 : GTCAGCGGACAATT----------TCCCCGCTT-CT-----TCACCATTA-A-ATTTACTG-C-TGAT-TTATTG-AGTGTCATATCTTA-CTA--TGAT-TTTT-TCTAA----T--C-ACT--AAAAGA---T-ACA---TTACTTAATTT-T--T-CATT-GGTTAATAGCTGTCGCATAAA--CTTTTTGTTAATTCAATTAGAAACATAAtt
gi|4 : gttctgttT----------TCCTTGCTCCCCACC--CTG-CGTTT-A-ATTGGCTA-C-TAAC-T------AGTGTAATATCTTG--TA--TGAA-ATCAATTAAA----T--C-GCC--TAGCGA---T-AAA---TGAGATCGCTT-T--T-CACT-GGTCAATAGTGGTCAAGTGTT--CTATTTGTTACTATAATTAAAAACAGAAtaaaaaattatttttgcttacaggatcaaacaagtacatttttgtaagaggtattatgattggataacatttttgtaagaggtgttttgat
gi|5 : GCTGAAAATT----------TCCTTGCTTTCTCGACTTTA-TGTTA-A-GTTGCACA-C-CAAC-ATACTG-AGTGTAACATCTAG-CTA--TGAC-TTTG-TTAAA----G--C-ACC--TTACAA---T-ACA---AGACA----TT-G--T-CATT-GGTCAATAGCAGTGACAGGTA--C---TTGTTACTAAAATTAGAAACAGAAatgtatagtctttttttttgttacgataggttcagaaagatatatattattaaaccataatttcattggcttatcaaaaacaa
gi|6 : cctTACGCT-C-CCTAGTCAGCGGAAGATT----------GTCCCTCTTTCT-----CTT-CGTTA-G-ATCTCCCA-C-TGAC-TTATTG-AGTGTCATTTCTTG-CTA--TGAA-ATTG-TCAGA----T--C-GCC--ATACAT---T-ACA---CGACACTAATT-T--T-TATT-GGTCAATAatgaattattacatcgtttgtgtttactgttgtgactggttcagatgatcacttttctgttagtcacat
gi|7 : gttaggttcatgagtcacTAATATGCTGC-C-TTGTCAGCGGACAATT----------TTTCCACTTTCT-----TTA-TGTTA-A-GTTTCCCA-C-AGAC-TTATTG-AGTGTTATATCTTG-CTA--TGAC-CTTG-TTAAA----A--C-ACC--AAACAA---T-ACA---TGACAACATTT-T--T-TATT-GGTCATTAGCAGTCACATGTC--CCTATTGTTACC-AAATTTGAAattaccactaagtaacagtaacagaaacgcctcattatggtccttttgttaacaataatagttgtaaatgg
gi|8 : atcatcctttgcagaatctataTCATCGGACAGTT----------TCCCCGCAAGCA-----CTA-GGTTA-A-ACCACTTG-C-AGAA-TTACTG-AGCGT-GTATTTCA-CTA--TGAC-CTGG-CTAAA----T--C-GCT--AAATGA---T-ACA---TGACATAAGTT-T--C-CATC-GGTCGATAGCGGTCATATAAA--CTTATTGTTATCAAACCTAGAAATAGAAtcttgaatagaa
gi|9 : GCGGTTAATG----------TTATTGCTTCCT-----TTG-CGTTATA-AAAACCT----TAGT-TTACCA-AGTGACATATTTTG-TTACCTGAC-TTT----AAA----T--CTGCT--AAATGA-----ACA---TGACA--ATTT-T--T--ATT-TGTCGGTAGCGGTCACGTTTA--CTTATTGTTTCTAAACTTAGAAATGGAatgttgacataatcagatggttgttttttatcgtattttat
blockSeqs : CTG . CT CGACT C T T CGCCAAT A G A C T A CC C A ATTCT T TTATGATCGT TAT CCA A TT G G AC TTA
blockSeqs : ATC . CG ACC . . . CATCCG . . A T . . . T . TAA . TTACACCAA . GCA . . . . . TTA
blockSeqs : CCC . TG . . . . AGTCGG . . A A . . . T . T . AAAACAATA . CTA . . . . . TTA
blockSeqs : GCC . TG . . . . TGCACG . . T A . . . A . A . TAAATGAT . CAG . . . . . TTA
blockSeqs : . CG . . . . CATCCA . . T T . . . A . T . AACCGAT . CCA . . . . . TTG
blockSeqs : . TG . . . . CATCAA . . C T . . . A . T . AGACGAA . TCA . . . . . TTA
blockSeqs : . TG . . . . CGCACT . . T G . . . C . T . TAACGAT . CCG . . . . . TAA
blockSeqs : . CT . . . . TTACTG . . T A . . . C . T . TAAAGAC . TAA . . . . . TTT
blockSeqs : . CA . . . . TGGCTA . . T G . . . C . T . AAAAGAT . TCG . . . . . TAT
blockSeqs : . CG . . . . TGCACA . . T T . . . T . T . TAGCGAT . CTA . . . . . CTA
blockSeqs : . TG . . . . CTCCCA . . T T . . . C . G . TTACAAT . ACA . . . . . TTA
blockSeqs : . T . . . . TTCCCA . . T C . . . T . T . ATACATT . TAA . . . . . TTA
blockSeqs : . . . . CACTTG . . T T . . . T . T . AAACAAT . AC . . . . . T
blockSeqs : . . . . ATTCG . . T T . . . A . G . AAATGAT . CC . . . . . .
blockSeqs : . . AACCT . . . C . . . T . T . AAATGA . CA . . . . . .
blockSeqs : . . AG . . . C . . . A . A . AA . A . . . . .
blockSeqs : . . . . . . . C . T . AC . . . . . . .
blockSeqs : . . . C . T . . . . .
blockSeqs : . . T . . .
blockSeqCons : ********** CG C* CCA TTA
originalCons : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGACC-TTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATCACTTTTTGTAAGCCATATAATATTTTGATTGGCCAATCTATAGCAAAGCGACATAACTTTTTTTTCCCTATTAGAAATAGAAATA
Unaligned ( gi|22 ): TTGTTTACTGTTTTGACAGTCTCAAATAATAAATTTTATGTAAGCCTTATTTGGATTGGTTAATCGGTAGCAAGTTG
Alignments
lowQualScore : 22222 1111111111 11111
lowQualScore : 66666 3333333333 11 11111 2 2 2 6666666 2 2 4 3 2 0 0 2 22 33 2 5555555 2 9999999999999 0 333 666 2 33 2 2 33 444
lowQualScore : ..... .......... .. ..... . . . ....... . . . . . . . . .. .. . ....... . ............. . ... ... . .. . . .. ...
lowQualScore : 99999 5555555555 44 33333 7 4 4 8888888 2 2 3 9 1 3 9 0 88 99 0 4444444 0 5555555555555 9 777 555 2 11 1 1 11 111
consensus : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
Reference ( family-703 ) : NNNNNNNNNNNNNNNNNNNNNNTAATACGCT-C-C-TAGTCAGCGGACAGTT----------TTCTCGCTTCCT-----TTA-CGTTA-A-ATCGCCCG-C-TGAC-TTANTG-AGTGTCATATCTTG-CTA--TGAC-CTTG-TTAAA----T--C-GCC--AAACGA---T-ACA---TGACACCATTT-T--T-CATT-GGTCGATAGCGGTCACATGTA--CTTATTGTTACTAAAATTAGAAACAGAA
gi|1 : TTA-A-ATCATTCG-C-T-AC-TGA----AGTGTCAAATCTGG-CTA--C-ACACTTG-TTAAT----T--C-ACA--AATTGA---T-ACA---AGA-ATC----------CATT-GGTTAATGGCAGTCACATTTA--C---TTGCTACTAAAATTAGAAACAGA
gi|10 : taaaTAATACGTT-CAT-TAGTCACCGGACAGTTACATGTATATTTCT-ATTTC--------TA-CGTTA-A-ACCATCCG-T-CGAC-GAACCA-AGTGCCATGTCTGG-CTA--CGAC-CTTG-TAAAA----T--A-GCC-------------------TGGCAAC--------T-CAAC-AATCGACAGTGGTCACATGTA--CTTATTGTTATCAAAATTAAAACCAGAAtatctttttaattgtttattgttatgatgacatcatttctgtaaaccccatattgaatgtcctaatcaatagcaagacatgtgtaccaacataattctcaatgttcccacgaaaacaaaatagcataatttctgccatttgagcagagatctgaaa
gi|11 : AATT----------CTTTCTCTTCCT-----TTA-CATCA-A-AGAGTCGG-C-CGAC-TAATTG-TGTGTGGTATCTTG-CTA--TTAC-TTAG-TTAAA----A--T-GCCTTACACCA---A-ACA-----ACACC-TTT-T--T-CATT-GGTCAATAGTCATCACATGTT--CTTACTGTTACTACATTTATAAACAatgacgttatgtatgcacccttgtg
gi|12 : tctcattgacagctttatgttgagatttacaCTG-C-TGAC-TAAA-G-AGTGTAATATAGAG-ATA--AGAT-TTTG-TCAAAATTCT--T-GGC--AA---------------TAACACCATTT-TTTT-CATT-GGTCAATAGCAGTTACATG-A--CTTACTGCTGCTAAAtactttttttt
gi|13 : CCT-----TTA-CATTT-A-ATTGCACG-C-TGAC-TTAATG-AGTACCATTTCTTG-ATA--TAAA-ATTG-TCATA----T--T-GCC--AACCGA---T-A-----------CATTT-T--T-CATT-GGTCGATAGCAGTAAAATATA--TTTATTGTCACTTAAATTAATAACAGAAtcatcatcacatcctttttgtttgctgctatgacaggcttagatgatcaccttttgcaaattaaagtttgattgaataatcg
gi|14 : caa-CATT-GGTTGATAGCGGTCACATGTT--C----TATGACTAAAATGAGAAGCAAAAacgttttattacatcatttttttattacaggtataacgggtacatata
gi|15 : GGAC-GTT----------TTCTT--TTTCT-----T---CTTTA-A-ATCGCCAATC-CGG----ATTG-TGTATAATTTCTAG-TTA--TGAC-ATT--TTAAA----------AC--AGACGA---A-A------AAGAGCATTT-C--TGCATT-TGTCGATAGCGGTCAGGTATG--CTTGTTGTTACGAAGAGTACAAACAAAAatgttttactacattatttgttatgaaagtttcaattgcatttcctttggtttgcaataaatgacatgtgtttctaatttcccccctaaaatataaacagcacatgttttgaaatattctagcagaggtgagaa
gi|16 : TGCACT-C-TGTAGCCAGCGTCCAGCT----------TCCTCGTTACCT-----CCA-CGGTA-ATAT-ATTCG-C-TAATGTTTTTA-ATTGCCATATCATT-ATG--TGAT-ATTG-GTGAA----T--C-GCT--TAACGA---T-ACG---TTATTCTATTT-T--T-CATT-CGTCAATGATGGTTTAATGTA--TT--TTGCTACTAATATTAGAAatgattcattacgtcataaatatttaatattg
gi|17 : -TAGTCAGCGGACAGTT----------TTCTTGCTACCA-----TCA-CTTTA-A-ACCATCCA-C-TGCC-TCGGTG-AGTGCCATATCTTT-CTG--TGAT-CCTG-CTAAA----T--C-GCCA-AAACAA---TAATA---TTACACAGTTTAT--G-CAAT-GGTTGATAGAAATGACATATA--TTTATTGT
gi|18 : gACGCTAT-C-TGGTCAGTGGACAGTT----------GTCTTGTTTCCT-----TTG-CGTTA-T-AGCATCAA-C-TGAC-T-AATGTAATGTCATATCTTG-CTG--TTTC-CTTG-TTGAA----T--C-GCCT-AAATGA---T-ATATATTGACACa
gi|19 : agtaacttcTTCCT-----CGA-CATTA-A-ATAG-------------TAGCA-AGTGTCATATCTCG-CTA--TCAC-CTGG-CTAAA----TAAC-TTC--TTATGATCGT-ACA---TGATTCCATTT-C--T-CATT-GGTCGGTAGCAGTCACATGTA--tttggtagctaattgtaatagtt
gi|2 : ttaactgttatatGTTA-A-ATCGCACT-CATGCC-TTATTG-AGTGTT-TATTCAGACTA--TGAT-TTTT-TTAAA----T--C-ACT--TAAAGA---C-ACA---TTACATCATTT-T--T-CATT-GGTTGATTGCAGTCAC---TAACCTAATTGTAACTAAAATGAAAAACAGAAatat
gi|21 : GTGCCATTTCTCG-CTC--TCAC-CTAT-TCAAA----T--C-GCT--A--------C-ACA---TGACACCGTTT-T--T-CACTGGGTCGATAACGTTCACATGTA--gtgaagtattgttttctgttatgacagactcatatgatcacctttttgaaagccatattttgattggctaattgatagcaaggtgcttgcgttgatttttttttcattttctcgttaaaatcagaaatag
gi|23 : G-AGTGTCATATCCTG-CTG--TGAC-TTTG-TTAAA----G--C-ACC--
gi|3 : GTCAGCGGACAATT----------TCCCCGCTT-CT-----TCACCATTA-A-ATTTACTG-C-TGAT-TTATTG-AGTGTCATATCTTA-CTA--TGAT-TTTT-TCTAA----T--C-ACT--AAAAGA---T-ACA---TTACTTAATTT-T--T-CATT-GGTTAATAGCTGTCGCATAAA--CTTTTTGTTAATTCAATTAGAAACATAAtt
gi|4 : gttctgttT----------TCCTTGCTCCCCACC--CTG-CGTTT-A-ATTGGCTA-C-TAAC-T------AGTGTAATATCTTG--TA--TGAA-ATCAATTAAA----T--C-GCC--TAGCGA---T-AAA---TGAGATCGCTT-T--T-CACT-GGTCAATAGTGGTCAAGTGTT--CTATTTGTTACTATAATTAAAAACAGAAtaaaaaattatttttgcttacaggatcaaacaagtacatttttgtaagaggtattatgattggataacatttttgtaagaggtgttttgat
gi|5 : GCTGAAAATT----------TCCTTGCTTTCTCGACTTTA-TGTTA-A-GTTGCACA-C-CAAC-ATACTG-AGTGTAACATCTAG-CTA--TGAC-TTTG-TTAAA----G--C-ACC--TTACAA---T-ACA---AGACA----TT-G--T-CATT-GGTCAATAGCAGTGACAGGTA--C---TTGTTACTAAAATTAGAAACAGAAatgtatagtctttttttttgttacgataggttcagaaagatatatattattaaaccataatttcattggcttatcaaaaacaa
gi|6 : cctTACGCT-C-CCTAGTCAGCGGAAGATT----------GTCCCTCTTTCT-----CTT-CGTTA-G-ATCTCCCA-C-TGAC-TTATTG-AGTGTCATTTCTTG-CTA--TGAA-ATTG-TCAGA----T--C-GCC--ATACAT---T-ACA---CGACACTAATT-T--T-TATT-GGTCAATAatgaattattacatcgtttgtgtttactgttgtgactggttcagatgatcacttttctgttagtcacat
gi|7 : gttaggttcatgagtcacTAATATGCTGC-C-TTGTCAGCGGACAATT----------TTTCCACTTTCT-----TTA-TGTTA-A-GTTTCCCA-C-AGAC-TTATTG-AGTGTTATATCTTG-CTA--TGAC-CTTG-TTAAA----A--C-ACC--AAACAA---T-ACA---TGACAACATTT-T--T-TATT-GGTCATTAGCAGTCACATGTC--CCTATTGTTACC-AAATTTGAAattaccactaagtaacagtaacagaaacgcctcattatggtccttttgttaacaataatagttgtaaatgg
gi|8 : atcatcctttgcagaatctataTCATCGGACAGTT----------TCCCCGCAAGCA-----CTA-GGTTA-A-ACCACTTG-C-AGAA-TTACTG-AGCGT-GTATTTCA-CTA--TGAC-CTGG-CTAAA----T--C-GCT--AAATGA---T-ACA---TGACATAAGTT-T--C-CATC-GGTCGATAGCGGTCATATAAA--CTTATTGTTATCAAACCTAGAAATAGAAtcttgaatagaa
gi|9 : GCGGTTAATG----------TTATTGCTTCCT-----TTG-CGTTATA-AAAACCT----TAGT-TTACCA-AGTGACATATTTTG-TTACCTGAC-TTT----AAA----T--CTGCT--AAATGA-----ACA---TGACA--ATTT-T--T--ATT-TGTCGGTAGCGGTCACGTTTA--CTTATTGTTTCTAAACTTAGAAATGGAatgttgacataatcagatggttgttttttatcgtattttat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATCACTTTTTGTAAGCCATATAATATTTTGATTGGCCAATCTATAGCAAAGCGACATAACTTTTTTTTCCCTATTAGAAATAGAAATA
Unaligned ( gi|22 ): TTGTTTACTGTTTTGACAGTCTCAAATAATAAATTTTATGTAAGCCTTATTTGGATTGGTTAATCGGTAGCAAGTTG