lowQualScore : 111111 6666666666666666666666666666 11 333333333333333333333 4444444444 2 1 5555555555555555555555 1111111 1111 111 2222222222222222 111 1 4
lowQualScore : 3 000000 8888888888888888888888888888 66 4 0 333333333333333333333 55 777 3333333333 8 3 66 6 4 777 22 77 0 5555555555555555555555 5 5 6666666 44 1111 333 77 77 3333333333333333 0 111 0 0
lowQualScore : . ...... ............................ .. . . ..................... .. ... .......... . . .. . . ... .. .. . ...................... . . ....... .. .... ... .. .. ................ . ... . .
lowQualScore : 6 555555 5555555555555555555555555555 88 4 5 555555555555555555555 55 000 0000000000 1 4 33 7 4 888 22 44 9 7777777777777777777777 2 0 2222222 11 0000 666 44 99 9999999999999999 3 777 0 0
consensus : NNCTGATACAGG-TAAGA------CAGGT------A------CT-------------CAATTATGAA-TTGNTCGCATTN-GAA--ACGGTAATT-NCCCGC--TTTACCT---ATACCGT------GCAATGATGAACTTGCCC-AATT-AT---CAACTAACTTTGAATCGATTATAT-AN-------------------GTACTCAATTA-TGAA-------TTGNTTG---CATNCGAAACG-GT--AA-TNACC-C----GCTTTACC---TT-GTCAAAC-AACTTTGAATCGATT
Reference ( gi|3 ) : GGCTGATACAGG-TAAGA------CAGGT------A------CT-------------CAATTATGAA-GTGTTTACATTC-GAA--ACGATAATT-TCACGC--TTTACCT---ATACCAA------ACAATGATAAACCTGCCC-AA-T-AT---CAACTAGTTTTTAATCGATTATAT-GT-------------------GTACTTAATTA-TGAA-------TTGTTTG---TATTCAAAACG-GT--AG-TAACT-C----ACTTTACC---TT-GTCAAACGAACTTTGAATCGATT
gi|5 : CCGATACAGG-TAAAA------CAGGT------A------TT-------------CAATTATGAA-TTGGTTCCATAA-CAA--ACTGTAACTACCCCAC--TTTACTT---AAACCTATTCTGTGTAATGATGAATTAGCCC-AATT-AT---CAAATAACTTTGAATCCATTATA
gi|2 : aacaactatggaaaCTGATACAGTCTGATA------CAGGT------A------TT-------------CAATAATGAA-TTGGTTACATAG-CAA--ACTGTAATT-gctaaaacactgtttatataacataagtttacgaaattaa
gi|6 : gagtacaggttcgaaatggttgaataacagtgattacccgcattacatataccgtgtaaggatgaactttccctattatcaattagtttccaatcgattatacagtTGATACAGG-TAAGA------CAGGT------A-------------------------TAT-AG-GTACTCA-ATTAAGAA--ACAGGCATT-ACTTGC--TTTACCT---ATACCGT------GTAGTGATAAGCTTGCCC-AATT-AT---CAACCAACTTTGAATCGATTATAT-AT-------------------gcccgaaaacgcaattatcaaataactttaaatcgaaaaaaaaagtgctttcaatacataaatttgcattacattaa
gi|1 : cagtccgttatttacttgagaaaggtgataaaagttttatctgcttcatttattTGATACAGG-TAAGAGAGGTATAGGT------A------CT-------------CAATTATGAA-----TTACAGT----A--A--ATACT-----CGC--TT-ACCC---ATACCGT------TCAATGATGAACTTGCCT-AATT-AT---CAACTTACTTTGAATCAACTTTAT--C-------------------GTACTTTTTTATTTAA-------ATATTGG---TATT-GAATCG-ATAAAG-TGTCTAC----AC----CC---TTGGCCAAAcgattattta
gi|11 : acaatctgtttttttgtttatgtgagaacggttgtaaacatatTGGTACAGT-TAAGA------CAGGTGTAGGTA------CT-------------CAAGCATGGATGTGAACATATTA-GAATAATG-TAATT-ACCTGC--TTTACCT---GTTC-----------AATGATGAACCTGCCA-AATT-AT---CAACttaattaaaatgtaaatcagttgtttgcaaacgaaaacgagaggccgtca
gi|13 : taaactttaggtcatTAATAGAGG-TAAGG------CAGGTATAGGTA------CT-------------CAATTATGAA-TTGTTTGCTTTCAAAA--ATGATAATaaa
gi|4 : attgacaacattttgtattgataacaattaGATACAGG-TATGG------CAGGTCTAGGAA------CT-------------CCATCACGGACGTGTACATATTA-GA------ATAATG-TAAC------TACAC---ATACCGT------TTAATGGGGAACCTGCCT-GATT-ATTTATAACGAACTTTAAATCGACTGTA
gi|7 : acagtccgttgtttattttattatttgagaatggttgtaaacatagtatcgactttgtatcatcATACAGG-TAAGA------CTGGT------ATATATACT-------------CAATTAT-----T-TTTGCATTC-GAA--ACAGTAATT-ACACGG--TTTACCTTGAATGT---------ACAATAAT-CACTTGCCA-AATT-AT---CAACAAACTTTAAATa
gi|9 : attctgtttttgtttatttgagaacagttttaaatgtattattgactttgtatcatctATACACG-CAAGA------CAGGT------GTAGGTGCT-------------GAATTAGGAA-TTGTTTGCATT---------------T-TC-TGC--ATTACCT---ATACTGT------GCAATGATGAACTTGCCCAAA-T-AT---CAA--ATTTTTTtaacttt
gi|10 : ctacagtccgtttttgtatatttaagaatggttgtaaacatattatcaaccaATATAGG-TAAGA------CAGAT------ATAGATACT-------------CAATAAGGAA-TTATTTGCATTC-GAA--ACGGTAA---TCATGCGATTTACCG---TTACCGT------CCTATGATtgcatcaactgcagtt
gi|8 : gtccatttttgtttatttgataacggctgtaatcatattacacactttgtatcgtccATACATG-TAAGA------CAAGT------G------TTTGGTTACATAATACAAGTATGAA-TTGGTTGCATAT-GAA--ACAGTAACA-ACCCGC--TTCACGT---ATACCAT------GCAATGATGAACATT-------T-AT---TGACTAACTTT
gi|2 : gtccgtttttgtttacttaagaatggttgtcaactttctaacaggttcatttattctGAA-ATGGTTGAAT-----A--ACAGTGATT-ACCCGC--ATTACAT---ATACCGT------GTAAGGATGAACTTTCCC-TA-TTAT---CAATTAGTTTCCAATCGATTATACAGTCTGATACAGTCTGATACAGGTATTCAATAA-TGAA-------TTGGTTA---CATAGCAAACT-GT--AA-TTGCC-CGAAAACGCAA-----TT-ATCAAAT-AACTTTAAATCGAga
gi|8 : gagtacaggttcTTGGTTACAT-A--------------------ATAC--AAGTA-TGAA-------TTGGTTG---CATATGAAACA-GT--AA-CAACC-C----GCTTCACaaaaaaaagtgctttcaatacataaatttgcattacattaa
gi|6 : gtccgtttttgtttacttaagaatggttgtcaactttctaacaggttcatttattctatacatgtaagacaagtgtTATAT-AG-------------------GTACTCAATTA-AGAAACAGGCATTACTTGCTTTACCTATACCGTGT--AG-TGA-T-A----AGCTTGCCCAATT-ATCAACC-AACTTTGAATCGATTgtataccatgcaatgatgaacatttattgactaactttga
gi|10 : cagtccgttatttacttgagaaaggtgataaaagttttatctgcttcatttatttgatacaggtaagacaggATAT-AG-------------------ATACTCAATAA-GGAA-------TTATTTG---CATTCGAAACG-GT--AA-TCATG-C----GATTTACC---atatatcgattattta
gi|7 : gtccatttttgtttatttgataacggctgtaatcatattacacactttgtatcgtccatataggtaagacagTAT-AT-------------------ATACTCAATTA-T-----------T-TTTG---CATTCGAAACA-GT--AA-TTACA-C----GGTTTACC---TT-Ggttaccgtcctatgat
gi|13 : attctgtttttgtttatttgagaacagttttaaatgtattattgactttgtatcatctatacaggtaagactggTAT-AG-------------------GTACTCAATTA-TGAA-------TTGTTTG---CTTTCAAAAaatgtacaataatcacttgccaaattatcaacaaactttaaattaacttt
gi|5 : attgacaacattttgtattgataacaattataatagaggtaaggcagg-------------------GTATTCAATTA-TGAA-------TTGGTTC---CATAACAAACT-GT--AACTACCC-C----ACTTTACT---Tatgataat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TGTCCTTTTTTGTTTACTTTAGAACGGTAGTAAACATGTTATTGACCGATACATGTAAGACAGGTGTATAGGTACGTTTTATCATTTATCAACTAACTTTAAATGCAT
Unaligned ( gi|14 ): ATTCAATTATGTGTTGGTTGCAAAACAAGCTGTAAACACCCGCTTTATCTATTCCATACATGATGAGCTTATCAACAAAC
Unaligned ( gi|15 ): ACAGTTCGTGTTTTTTTTTTCATTTGAGATATTATCATTGAAAATATAGTATCGGTTTCTTTGGATCCTTGGTACAGGT
Unaligned ( gi|16 ): GTCTATTTTTGTTAATGTGAGAACGATTGTATCTATACTATAGACTTTCTTTCATCAATAAGAATACAGGTATAGGTA
Unaligned ( gi|17 ): AGTCTGTTCTTGTTTATTTTGAAAACGGTTAGGAACTTTTTATCGGCTTCATTTATTTTATACAGGTAAGACAG
Alignments
lowQualScore : 5555555555555555555555555555 11111 44444444444444444444 2222 44444444444 2
lowQualScore : 3 999999 4444444444444444444444444444 5 3 3 77777 5 6 4 2 3 0 0 888888 3 4 1 555 0 00000000000000000000 99 99 6 6 0 3 4444 1 66666666666 0
lowQualScore : . ...... ............................ . . . ..... . . . . . . . ...... . . . ... . .................... .. .. . . . . .... . ........... .
lowQualScore : 3 666666 9999999999999999999999999999 7 0 2 00000 7 4 0 1 1 8 6 888888 3 9 0 888 8 66666666666666666666 22 22 7 7 8 8 0000 0 55555555555 0
consensus : NNCTGATACAGG-TAAGA------CAGGT------A------CT-------------CAATTATGAAT-TGNTTGCATT-A-GAA-ACNGTAATTACCC-GCTTTACCTATACC------GTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATANGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
Reference ( family-675 ) : NNCTGATACAGG-TAAGA------CAGGT------A------CT-------------CAATTATGAAT-TGNTCGCATT-N-GAA-ACGGTAATTNCCC-GCTTTACCTATACC------GTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGATT--------------------ATATANGTAC--TCAAT-TA-TGAATTGNTTGCATNC-GAAACGGTAATNACCCG----CTTTACCTTGTCAAAC-AACTTTGAATCGATT
gi|1 : TGATACAGG-TAAGAGAGGTATAGGT------A------CT-------------CAATTATGAAT-T----------------ACAGTAAATACTC-GCTT-ACCCATACC------GTTCAATGATGAACTTGCCTAATTAT---CAACTTACTTTGAATCAACT--------------------TTAT-CGTAC--TTTTT-TATTTAAATATTGGTATT--GAATCGATAA
gi|10 : acaatctgtttttttgtttatgtgagaacggttgtaaacatatATATAGG-TAAGA------CAGAT------ATAGATACT-------------CAATAAGGAAT-TATTTGCATT-C-GAA-ACGGTAATCATGC-GATTTACCGTTACC------GTCCTATGATagtgtctacacccttggccaaattaattaaaatgtaaatcagttgtttgcaaacgaaaacgagaggccgtca
gi|11 : gtccatttttgtttatttgataacggctgtaatcatattacacactttgtatcgtccTGGTACAGT-TAAGA------CAGGTGTAGGTA------CT-------------CAAGCATGGATGTGAACATATT-A-GAATAATGTAATTACCT-GCTTTACCT-----------GTTCAATGATGAACCTGCCAAATTAT---CAACAAA
gi|13 : taaactttaggtcatTAATAGAGG-TAAGG------CAGGTATAGGTA------CT-------------CAATTATGAAT-TGTTTGCTTTCA-AAA-ATGATAAT
gi|13 : attgacaacattttgtattgataacaattaTATAGGTAC--TCAAT-TA-TGAATTGTTTGCTTTCAAAAATGATAAT
gi|14 : attgacaacattttgtattgataacaattataatagaggtaaggcagg------A------TT-------------CAATTATGTGT-TGGTTGCAAA-A-CAA-GCTGTAAACACCC-GCTTTATCTATTCC------ATAC-ATGATGAGC--------TTAT---CAACAAAC
gi|2 : GAAA-TGGTTGAAT------A-ACAGTGATTACCC-GCATTACATATACC------GTGTAAGGATGAACTTTCCCTATTAT---CAATTAGTTTCCAATCGATTATACAGTCTGATACAGTCTGATACAGGTAT--TCAAT-AA-TGAATTGGTTACATAG-CAAACTGTAATTGCCCGAAAACGCAA--TTATCAAAT-AACTTTAAATCGA
gi|2 : gagtacaggttcCTGATACAGTCTGATA------CAGGT------A------TT-------------CAATAATGAAT-TGGTTACATA-G-CAA-ACTGTAATTGCCC-G-----------------------AA-----AAC--GC--AATTAT---CAAATAACTTTAAATCGAAA--------------------AAAAAAGTGCTTTCAATACA-TAAAT---TTGCATaaaaaaaagtgctttcaatacataaatttgcattacattaa
gi|3 : gagtacaggttcgaaatggttgaataacagtgattacccgcattacatataccgtgtaaggatgaactttccctattatcaattagtttccaatcgattatacagtCTGATACAGG-TAAGA------CAGGT------A------CT-------------CAATTATGAAG-TGTTTACATT-C-GAA-ACGATAATTTCAC-GCTTTACCTATACC------AAACAATGATAAACCTGCCCAA-TAT---CAACTAGTTTTTAATCGATT--------------------ATATGTGTAC--TTAAT-TA-TGAATTGTTTGTATTC-AAAACGGTAGTAACTCA----CTTTACCTTGTCAAACGAACTTTGAATCGATTtacattaa
gi|4 : ggGATACAGG-TATGG------CAGGTCTAGGAA------CT-------------CCATCACGGACGTGTACATATT-A-GAATAATGTAACTAC--------AC--ATACC------GTTTAATGGGGAACCTGCCTGATTATTTATAACGAACTTTAAATCGACT--------------------GTA
gi|5 : acagtccgttgtttattttattatttgagaatggttgtaaacatagtatcgactttgtatcatcCCGATACAGG-TAAAA------CAGGT------A------TT-------------CAATTATGAAT-TGGTTCCATA-A-CAA-ACTGTAACTACCCCACTTTACTTAAACCTATTCTGTGTAATGATGAATTAGCCCAATTAT---CAAATAACTTTGAATCCATT--------------------ATAa
gi|6 : aacaactatggaaaTGATACAGG-TAAGA------CAGGT------A-------------------------TAT-AGG-TACTCA-ATT-AAGAA-ACAGGCATTACTT-GCTTTACCTATACC------GTGTAGTGATAAGCTTGCCCAATTAT---CAACCAACTTTGAATCGATT--------------------ATATA-------TCGAT-TA-Tgctaaaacactgtttatataacataagtttacgaaattaa
gi|7 : cagtccgttatttacttgagaaaggtgataaaagttttatctgcttcatttattATACAGG-TAAGA------CTGGT------ATATATACT-------------CAATTAT---T-T--TTGCATT-C-GAA-ACAGTAATTACAC-GGTTTACCTTGAAT------GTACAATAAT-CACTTGCCAAATTAT---CAACAAACTTTAAATtta
gi|8 : attctgtttttgtttatttgagaacagttttaaatgtattattgactttgtatcatctATACATG-TAAGA------CAAGT------G------TTTGGTTACATAATACAAGTATGAAT-TGGTTGCATA-T-GAA-ACAGTAACAACCC-GCTTCACGTATACC------ATGCAATGATGAA------CATTTAT---TGACTAACTTTGAtaacttt
gi|9 : gtccgtttttgtttacttaagaatggttgtcaactttctaacaggttcatttattctATACACG-CAAGA------CAGGT------GTAGGTGCT-------------GAATTAGGAAT-TGTTTGCATT--------------TT--CT-GCATTACCTATACT------GTGCAATGATGAACTTGCCCAAATAT---CAAATTTTTTTGCATCAACT--------------------
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCCTTTTTTGTTTACTTTAGAACGGTAGTAAACATGTTATTGACCGATACATGTAAGACAGGTGTATAGGTACGTTTTATCATTTATCAACTAACTTTAAATGCAT
Unaligned ( gi|15 ): ACAGTTCGTGTTTTTTTTTTCATTTGAGATATTATCATTGAAAATATAGTATCGGTTTCTTTGGATCCTTGGTACAGGT
Unaligned ( gi|16 ): GTCTATTTTTGTTAATGTGAGAACGATTGTATCTATACTATAGACTTTCTTTCATCAATAAGAATACAGGTATAGGTA
Unaligned ( gi|17 ): AGTCTGTTCTTGTTTATTTTGAAAACGGTTAGGAACTTTTTATCGGCTTCATTTATTTTATACAGGTAAGACAG
Alignments
lowQualScore : 666666666666666666666666666666 11111 33333333333333333333 222 2222 11 1
lowQualScore : 3 999999 000000000000000000000000000000 5 44 44444 5 2 3 2 888888 0 3 4 1 555 0 66666666666666666666 99 99 6 6 6 333 1 4444 1 1 77 5
lowQualScore : . ...... .............................. . .. ..... . . . . ...... . . . . ... . .................... .. .. . . . ... . .... . . .. .
lowQualScore : 3 666666 444444444444444444444444444444 7 11 22222 7 0 1 1 888888 6 3 9 0 888 8 11111111111111111111 22 22 7 7 0 000 0 0000 0 0 55 0
consensus : NNCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAT-TGNTTGCATT-AG-AA-ACNGTAATTA-CCCGCTTT------ACCTATACCGTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATANGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
Reference ( family-675 ) : NNCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAT-TGNTTGCATT-AG-AA-ACNGTAATTA-CCCGCTTT------ACCTATACCGTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATANGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
gi|1 : TGATACAGG-TAAGAGAGGTATAGGT------A--------CT-------------CAATTATGAAT-T----------------ACAGTAAATA-CTCGCTT-------ACCCATACCGTTCAATGATGAACTTGCCTAATTAT---CAACTTACTTTGAATCAACT--------------------TTAT-CGTAC--TTTTT-TATTTAAATATTGGTATT--GAATCGATAA
gi|10 : acaatctgtttttttgtttatgtgagaacggttgtaaacatatATATAGG-TAAGA------CAGAT------ATAGATA--CT-------------CAATAAGGAAT-TATTTGCATT-CG-AA-ACGGTAATCA-TGCGATTT------ACCGTTACCGTCCTATGATagtgtctacacccttggccaaattaattaaaatgtaaatcagttgtttgcaaacgaaaacgagaggccgtca
gi|11 : gtccatttttgtttatttgataacggctgtaatcatattacacactttgtatcgtccTGGTACAGT-TAAGA------CAGGTGTAGGTA--------CT-------------CAAGCATGGATGTGAACATATT-AG-AATAATGTAATTA-CCTGCTTT------ACCT-----GTTCAATGATGAACCTGCCAAATTAT---CAACAAA
gi|13 : taaactttaggtcatTAATAGAGG-TAAGG------CAGGTATAGGTA--------CT-------------CAATTATGAAT-TGTTTGCTTTCAA-AA-ATGATAAT
gi|13 : attgacaacattttgtattgataacaattaTATAGGTAC--TCAAT-TA-TGAATTGTTTGCTTTCAAAAATGATAAT
gi|14 : attgacaacattttgtattgataacaattataatagaggtaaggcagg------A--------TT-------------CAATTATGTGT-TGGTTGCAAA-AC-AA-GCTGTAAACA-CCCGCTTT------ATCTATTCCATAC-ATGATGAGC--------TTAT---CAACAAAC
gi|2 : GAAA-TGGTTGAAT------A-ACAGTGATTA-CCCGCATT------ACATATACCGTGTAAGGATGAACTTTCCCTATTAT---CAATTAGTTTCCAATCGATTATACAGTCTGATACAGTCTGATACAGGTAT--TCAAT-AA-TGAATTGGTTACATAG-CAAACTGTAATTGCCCGAAAACGCAA--TTATCAAAT-AACTTTAAATCGA
gi|2 : gagtacaggttcCTGATACAGTCTGATA------CAGGT------A--------TT-------------CAATAATGAAT-TGGTTACA-T-AGCAA-ACTGTAATTG-CCCG-----------------------AA-----AAC--GC--AATTAT---CAAATAACTTTAAATCGAAA--------------------AAAAAAGTGCTTTCAATACA-TAAA---TTTGCATTaaaaaaaagtgctttcaatacataaatttgcattacattaa
gi|3 : gagtacaggttcgaaatggttgaataacagtgattacccgcattacatataccgtgtaaggatgaactttccctattatcaattagtttccaatcgattatacagtCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAG-TGTTTACATT-CG-AA-ACGATAATTT-CACGCTTT------ACCTATACCAAACAATGATAAACCTGCCCAA-TAT---CAACTAGTTTTTAATCGATT--------------------ATATGTGTAC--TTAAT-TA-TGAATTGTTTGTATTC-AAAACGGTAGTAACTC----ACTTTACCTTGTCAAACGAACTTTGAATCGATTacattaa
gi|4 : ggGATACAGG-TATGG------CAGGTCTAGGAA--------CT-------------CCATCACGGACGTGTACATATT-AG-AATAATGTAACTA-C-------------AC--ATACCGTTTAATGGGGAACCTGCCTGATTATTTATAACGAACTTTAAATCGACT--------------------GTA
gi|5 : acagtccgttgtttattttattatttgagaatggttgtaaacatagtatcgactttgtatcatcCCGATACAGG-TAAAA------CAGGT------A--------TT-------------CAATTATGAAT-TGGTTCCATA-AC-AA-ACTGTAACTACCCCACTTTACTTAAACCTATTCTGTGTAATGATGAATTAGCCCAATTAT---CAAATAACTTTGAATCCATT--------------------ATAa
gi|6 : aacaactatggaaaTGATACAGG-TAAGA------CAGGT------ATATAGGTACT-------------CAATTA-----------------AG-AA-ACAGGCATTA-CTTGCTTT------ACCTATACCGTGTAGTGATAAGCTTGCCCAATTAT---CAACCAACTTTGAATCGATT--------------------ATATA-------TCGAT-TA-Tgctaaaacactgtttatataacataagtttacgaaattaa
gi|7 : cagtccgttatttacttgagaaaggtgataaaagttttatctgcttcatttattATACAGG-TAAGA------CTGGT------ATATATA--CT-------------CAATTAT---T-T--TTGCATT-CG-AA-ACAGTAATTA-CACGGTTT------ACCTTGAATGTACAATAAT-CACTTGCCAAATTAT---CAACAAACTTTAAATTAACT--------------------tta
gi|8 : attctgtttttgtttatttgagaacagttttaaatgtattattgactttgtatcatctATACATG-TAAGA------CAAGT------G--------TTTGGTTACATAATACAAGTATGAAT-TGGTTGCATA-TG-AA-ACAGTAACAA-CCCGCTTC------ACGTATACCATGCAATGATGAA------CATTTAT---TGACTAACTTTGAtt
gi|9 : gtccgtttttgtttacttaagaatggttgtcaactttctaacaggttcatttattctATACACG-CAAGA------CAGGT------GTAGGTG--CT-------------GAATTAGGAAT-TGTTTGCATT--------------TT---CTGCATT------ACCTATACTGTGCAATGATGAACTTGCCCAAATAT---CAAATTTTTTTGCATCAACT--------------------
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCCTTTTTTGTTTACTTTAGAACGGTAGTAAACATGTTATTGACCGATACATGTAAGACAGGTGTATAGGTACGTTTTATCATTTATCAACTAACTTTAAATGCAT
Unaligned ( gi|15 ): ACAGTTCGTGTTTTTTTTTTCATTTGAGATATTATCATTGAAAATATAGTATCGGTTTCTTTGGATCCTTGGTACAGGT
Unaligned ( gi|16 ): GTCTATTTTTGTTAATGTGAGAACGATTGTATCTATACTATAGACTTTCTTTCATCAATAAGAATACAGGTATAGGTA
Unaligned ( gi|17 ): AGTCTGTTCTTGTTTATTTTGAAAACGGTTAGGAACTTTTTATCGGCTTCATTTATTTTATACAGGTAAGACAG
Alignments
lowQualScore : 666666666666666666666666666666 11111 33333333333333333333 222 2222 11 1
lowQualScore : 3 999999 000000000000000000000000000000 5 44 44444 5 2 3 2 888888 0 3 4 1 555 0 66666666666666666666 99 99 6 6 6 333 1 4444 1 1 77 5
lowQualScore : . ...... .............................. . .. ..... . . . . ...... . . . . ... . .................... .. .. . . . ... . .... . . .. .
lowQualScore : 3 666666 444444444444444444444444444444 7 11 22222 7 0 1 1 888888 6 3 9 0 888 8 11111111111111111111 22 22 7 7 0 000 0 0000 0 0 55 0
consensus : NNCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAT-TGNTTGCATT-AG-AA-ACNGTAATTA-CCCGCTTT------ACCTATACCGTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATANGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
Reference ( family-675 ) : NNCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAT-TGNTTGCATT-AG-AA-ACNGTAATTA-CCCGCTTT------ACCTATACCGTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATANGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
gi|1 : TGATACAGG-TAAGAGAGGTATAGGT------A--------CT-------------CAATTATGAAT-T----------------ACAGTAAATA-CTCGCTT-------ACCCATACCGTTCAATGATGAACTTGCCTAATTAT---CAACTTACTTTGAATCAACT--------------------TTAT-CGTAC--TTTTT-TATTTAAATATTGGTATT--GAATCGATAA
gi|10 : acaatctgtttttttgtttatgtgagaacggttgtaaacatatATATAGG-TAAGA------CAGAT------ATAGATA--CT-------------CAATAAGGAAT-TATTTGCATT-CG-AA-ACGGTAATCA-TGCGATTT------ACCGTTACCGTCCTATGATagtgtctacacccttggccaaattaattaaaatgtaaatcagttgtttgcaaacgaaaacgagaggccgtca
gi|11 : gtccatttttgtttatttgataacggctgtaatcatattacacactttgtatcgtccTGGTACAGT-TAAGA------CAGGTGTAGGTA--------CT-------------CAAGCATGGATGTGAACATATT-AG-AATAATGTAATTA-CCTGCTTT------ACCT-----GTTCAATGATGAACCTGCCAAATTAT---CAACAAA
gi|13 : taaactttaggtcatTAATAGAGG-TAAGG------CAGGTATAGGTA--------CT-------------CAATTATGAAT-TGTTTGCTTTCAA-AA-ATGATAAT
gi|13 : attgacaacattttgtattgataacaattaTATAGGTAC--TCAAT-TA-TGAATTGTTTGCTTTCAAAAATGATAAT
gi|14 : attgacaacattttgtattgataacaattataatagaggtaaggcagg------A--------TT-------------CAATTATGTGT-TGGTTGCAAA-AC-AA-GCTGTAAACA-CCCGCTTT------ATCTATTCCATAC-ATGATGAGC--------TTAT---CAACAAAC
gi|2 : GAAA-TGGTTGAAT------A-ACAGTGATTA-CCCGCATT------ACATATACCGTGTAAGGATGAACTTTCCCTATTAT---CAATTAGTTTCCAATCGATTATACAGTCTGATACAGTCTGATACAGGTAT--TCAAT-AA-TGAATTGGTTACATAG-CAAACTGTAATTGCCCGAAAACGCAA--TTATCAAAT-AACTTTAAATCGA
gi|2 : gagtacaggttcCTGATACAGTCTGATA------CAGGT------A--------TT-------------CAATAATGAAT-TGGTTACA-T-AGCAA-ACTGTAATTG-CCCG-----------------------AA-----AAC--GC--AATTAT---CAAATAACTTTAAATCGAAA--------------------AAAAAAGTGCTTTCAATACA-TAAA---TTTGCATTaaaaaaaagtgctttcaatacataaatttgcattacattaa
gi|3 : gagtacaggttcgaaatggttgaataacagtgattacccgcattacatataccgtgtaaggatgaactttccctattatcaattagtttccaatcgattatacagtCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAG-TGTTTACATT-CG-AA-ACGATAATTT-CACGCTTT------ACCTATACCAAACAATGATAAACCTGCCCAA-TAT---CAACTAGTTTTTAATCGATT--------------------ATATGTGTAC--TTAAT-TA-TGAATTGTTTGTATTC-AAAACGGTAGTAACTC----ACTTTACCTTGTCAAACGAACTTTGAATCGATTacattaa
gi|4 : ggGATACAGG-TATGG------CAGGTCTAGGAA--------CT-------------CCATCACGGACGTGTACATATT-AG-AATAATGTAACTA-C-------------AC--ATACCGTTTAATGGGGAACCTGCCTGATTATTTATAACGAACTTTAAATCGACT--------------------GTA
gi|5 : acagtccgttgtttattttattatttgagaatggttgtaaacatagtatcgactttgtatcatcCCGATACAGG-TAAAA------CAGGT------A--------TT-------------CAATTATGAAT-TGGTTCCATA-AC-AA-ACTGTAACTACCCCACTTTACTTAAACCTATTCTGTGTAATGATGAATTAGCCCAATTAT---CAAATAACTTTGAATCCATT--------------------ATAa
gi|6 : aacaactatggaaaTGATACAGG-TAAGA------CAGGT------ATATAGGTACT-------------CAATTA-----------------AG-AA-ACAGGCATTA-CTTGCTTT------ACCTATACCGTGTAGTGATAAGCTTGCCCAATTAT---CAACCAACTTTGAATCGATT--------------------ATATA-------TCGAT-TA-Tgctaaaacactgtttatataacataagtttacgaaattaa
gi|7 : cagtccgttatttacttgagaaaggtgataaaagttttatctgcttcatttattATACAGG-TAAGA------CTGGT------ATATATA--CT-------------CAATTAT---T-T--TTGCATT-CG-AA-ACAGTAATTA-CACGGTTT------ACCTTGAATGTACAATAAT-CACTTGCCAAATTAT---CAACAAACTTTAAATTAACT--------------------tta
gi|8 : attctgtttttgtttatttgagaacagttttaaatgtattattgactttgtatcatctATACATG-TAAGA------CAAGT------G--------TTTGGTTACATAATACAAGTATGAAT-TGGTTGCATA-TG-AA-ACAGTAACAA-CCCGCTTC------ACGTATACCATGCAATGATGAA------CATTTAT---TGACTAACTTTGAtt
gi|9 : gtccgtttttgtttacttaagaatggttgtcaactttctaacaggttcatttattctATACACG-CAAGA------CAGGT------GTAGGTG--CT-------------GAATTAGGAAT-TGTTTGCATT--------------TT---CTGCATT------ACCTATACTGTGCAATGATGAACTTGCCCAAATAT---CAAATTTTTTTGCATCAACT--------------------
blockSeqs : C . GTTTGGTTACATAATA G AT TCAA T G C G ACTTAA C C A TTA ATACAGTCTGATACAGTCTG AG TT A . T CAA A . T T CC G
blockSeqs : . . ATATAGGTACT G GA TAGC T T . C . T T C . . AG . . . T GC
blockSeqs : . . ATAGATACT . GT TCG . G . C . A C C . . AA . . . T CA
blockSeqs : . . GTAGGTACT . GG TAG . T . C . G C T . . GT . . . .
blockSeqs : . . ATAGGTACT . GG AAC . A . C . A T C . . A . . .
blockSeqs : . . CTAGGAACT . GG TCG . T . A . T T C . .
blockSeqs : . . ATATATACT . GT TAG . G . C . G T A . .
blockSeqs : . . GTAGGTGCT . GT AAC . T . T . G T C . .
blockSeqs : . . ATT . GG TCG . T . A . A . C .
blockSeqs : . . ATT . GG ATG . A . C . G . . .
blockSeqs : . . ACT . GT AG . A . C . G . . .
blockSeqs : ATT . . T . A . . . .
blockSeqs : . . . . .
blockSeqCons : ****** ATAGGTACT********************* GN TNG** AG
originalCons : NNCTGATACAGG-TAAGA------CAGGT------A--------CT-------------CAATTATGAAT-TGNTTGCATT-AG-AA-ACNGTAATTA-CCCGCTTT------ACCTATACCGTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATANGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
finalCons : NNCTGATACAGG-TAAGA------CAGGTATAGGTACT---------------------CAATTATGAAT-TGNTTGCATTNG--AA-ACNGTAATTA-CCCGCTTT------ACCTATACCGTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACT--------------------ATATAGGTAC--TCAAT-TA-TGAATTGTTTGCATTC-GAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCCTTTTTTGTTTACTTTAGAACGGTAGTAAACATGTTATTGACCGATACATGTAAGACAGGTGTATAGGTACGTTTTATCATTTATCAACTAACTTTAAATGCAT
Unaligned ( gi|15 ): ACAGTTCGTGTTTTTTTTTTCATTTGAGATATTATCATTGAAAATATAGTATCGGTTTCTTTGGATCCTTGGTACAGGT
Unaligned ( gi|16 ): GTCTATTTTTGTTAATGTGAGAACGATTGTATCTATACTATAGACTTTCTTTCATCAATAAGAATACAGGTATAGGTA
Unaligned ( gi|17 ): AGTCTGTTCTTGTTTATTTTGAAAACGGTTAGGAACTTTTTATCGGCTTCATTTATTTTATACAGGTAAGACAG
Alignments
lowQualScore : 111 777777777777777777777777777777777777777777777 111 3333 1
lowQualScore : 44 0 66666 888888 77777 5 44 333 5 2 2 2 3 0 0 888888 3 4 1 555 777777777777777777777777777777777777777777777 6 6 8 444 99 0 11 3 3333 222 6 5
lowQualScore : .. . ..... ...... ..... . .. ... . . . . . . . ...... . . . ... ............................................. . . . ... .. . .. . .... ... . .
lowQualScore : 22 1 22222 222222 11111 3 11 000 7 0 9 1 1 8 6 888888 3 9 0 444 333333333333333333333333333333333333333333333 7 7 2 888 00 2 77 7 0000 777 7 0
consensus : NNCTGATACAGGTAAGACAG--GTAT--A--GGTAC------TCAAT-----TATGAAT-TGNTTGCATTNGAA-ACNG-TAATTACCC-GCTTTACCTATACC------GTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACTAT--------------------ATANGTA---------------C--TCAAT-TA-TGAATTGTTTGCATTCGAAACGGTAATTACNCGG--ACTTTACCTTGTCAAACGAACTTTGAATCGATT
Reference ( family-675 ) : NNCTGATACAGGTAAGACAG--GTAT--A--GGTAC------TCAAT-----TATGAAT-TGNTTGCATTNGAA-ACNG-TAATTACCC-GCTTTACCTATACC------GTGCAATGATGAACTTGCCCAATTAT---CAACTAACTTTGAATCGACTAT--------------------ATAGGTA---------------C--TCAAT-TA-TGAATTGTTTGCATTCGAAACGGTAATNGCCCGAAAACNCNACCTTGTCAAACGAACTTTGAATCGATT
gi|1 : TGATACAGGTAAGAGAG--GTAT--A--GGTAC------TCAAT-----TATGAAT-T--------------ACAG-TAAATACTC-GCTT-ACCCATACC------GTTCAATGATGAACTTGCCTAATTAT---CAACTTACTTTGAATCAACTTT--------------------AT-CGTA---------------C--TTTTT-TATTTAAATATTGGTATT-GAATCGATAA
gi|10 : acaatctgtttttttgtttatgtgagaacggttgtaaacatatATATAGGTAAGACAG--ATAT--A--GATAC------TCAAT-----AAGGAAT-TATTTGCATTCGAA-ACGG-TAATCATGC-GATTTACCGTTACC------GTCCTATGATagtgtctacacccttggccaaattaattaaaatgtaaatcagttgtttgcaaacgaaaacgagaggccgtca
gi|11 : gtccatttttgtttatttgataacggctgtaatcatattacacactttgtatcgtccTGGTACAGTTAAGACAG--GTGT--A--GGTAC------TCAAG-----CATGGATGTGAACATATTAGAATAATG-TAATTACCT-GCTTTACCT-----------GTTCAATGATGAACCTGCCAAATTAT---CAACAAA
gi|12 : taaactttaggtcatCCGATACATGTAAGACAGGTGTAT--A--GGTACGTTTTATCATT-----TATCAAC-T
gi|13 : tgtccttttttgtttactttagaacggtagtaaacatgttattgaTAATAGAGGTAAGGCAG--GTAT--A--GGTAC------TCAAT-----TATGAAT-TGTTTGCTTTCAAA-AATGATAATaactttaaatgcat
gi|14 : attgacaacattttgtattgataacaattaAT------TCAAT-----TATGTGT-TGGTTGCAAAACAA-GCTG-TAAACACCC-GCTTTATCTATTCC------ATAC-ATGATGAGC--------TTAT---CAACAAAC
gi|2 : GAAA-TGGTTGAAT----A-ACAG-TGATTACCC-GCATTACATATACC------GTGTAAGGATGAACTTTCCCTATTAT---CAATTAGTTTCCAATCGATTATACAGTCTGATACAGTCTGATACAGGTA---------------T--TCAAT-AA-TGAATTGGTTACATAGCAAACTGTAATTGCCCGAAAACGCAA--TTATCAAAT-AACTTTAAATCGA
gi|2 : gagtacaggttcCTGATACAG-T----CTG--ATAC--A--GGTAT------TCAAT-----AATGAAT-TGGTTACATAGCAA-ACTG-TAATTGCCC-G-----------------------AA-----AAC--GC--AATTAT---CAAATAACTTTAAATCGAAAAA--------------------AAAAGTG---------------CTTTCAATACA-TAAA---TTTGCATTaaaaaaaagtgctttcaatacataaatttgcattacattaa
gi|3 : gagtacaggttcgaaatggttgaataacagtgattacccgcattacatataccgtgtaaggatgaactttccctattatcaattagtttccaatcgattatacagtCTGATACAGGTAAGACAG--GT----------AC------TCAAT-----TATGAAG-TGTTTACATTCGAA-ACGA-TAATTTCAC-GCTTTACCTATACC------AAACAATGATAAACCTGCCCAA-TAT---CAACTAGTTTTTAATCGATTAT--------------------ATGTGTA---------------C--TTAAT-TA-TGAATTGTTTGTATTCAAAACGGTAGTAACTC----ACTTTACCTTGTCAAACGAACTTTGAATCGATTacattaa
gi|4 : ggGATACAGGTATGGCAG--GTCT--A--GGAAC------TCCAT-----CACGGACGTGTACATATTAGAATAATG-TAACTAC--------AC--ATACC------GTTTAATGGGGAACCTGCCTGATTATTTATAACGAACTTTAAATCGACTGT--------------------A
gi|5 : acagtccgttgtttattttattatttgagaatggttgtaaacatagtatcgactttgtatcatcCCGATACAGGTAAAACAG--GTAT----------------TCAAT-----TATGAAT-TGGTTCCATAACAA-ACTG-TAACTACCCCACTTTACTTAAACCTATTCTGTGTAATGATGAATTAGCCCAATTAT---CAAATAACTTTGAATCCATTAT--------------------Aa
gi|6 : aacaactatggaaaTGATACAGGTAAGACAG--GTAT--ATAGGTAC------TCAAT-----TA----------------AGAA-ACAG-GCATTACTT-GCTTTACCTATACC------GTGTAGTGATAAGCTTGCCCAATTAT---CAACCAACTTTGAATCGATTAT--------------------ATA----------------------TCGAT-TA-Tgctaaaacactgtttatataacataagtttacgaaattaa
gi|7 : cagtccgttatttacttgagaaaggtgataaaagttttatctgcttcatttattATTAT-------TGACTTTGTATCATCTAT--------------------ACAGGTAAGACTGGTATATATAC--TCAAT-TA-T----T-TTTGCATTCGAAACAGTAATTACACGG----TTTACCTTGtta
gi|7 : attctgtttttgtttatttgagaacagttttaaatgtATACAGGTAAGACTG--GTAT--A--TATAC------TCAAT-----TAT---T-T--TTGCATTCGAA-ACAG-TAATTACAC-GGTTTACCTTGAAT------GTACAATAAT-CACTTGCCAAATTAT---CAACAAACTTTAAATTAACTaatgtacaataatcacttgccaaattatcaacaaactttaaattaacttt
gi|8 : attctgtttttgtttatttgagaacagttttaaatgtattattgactttgtatcatctATACATGTAAGACAA--GTGTTTG--GTTAC------ATAATACAAGTATGAAT-TGGTTGCATATGAA-ACAG-TAACAACCC-GCTTCACGTATACC------ATGCAATGATGAA------CATTTAT---TGACTAACTTTGAtt
gi|9 : gtccgtttttgtttacttaagaatggttgtcaactttctaacaggttcatttattctATACACGCAAGACAG--GTGT--A--GGTGC------TGAAT-----TAGGAAT-TGTTTGCATT-------------TT--CT-GCATTACCTATACT------GTGCAATGATGAACTTGCCCAAATAT---CAAATTTTTTTGCATCAACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACAGTTCGTGTTTTTTTTTTCATTTGAGATATTATCATTGAAAATATAGTATCGGTTTCTTTGGATCCTTGGTACAGGT
Unaligned ( gi|16 ): GTCTATTTTTGTTAATGTGAGAACGATTGTATCTATACTATAGACTTTCTTTCATCAATAAGAATACAGGTATAGGTA
Unaligned ( gi|17 ): AGTCTGTTCTTGTTTATTTTGAAAACGGTTAGGAACTTTTTATCGGCTTCATTTATTTTATACAGGTAAGACAG