lowQualScore : 1 11111 11 11 111 11 1111111111 22 1 222 1 33333333333333333333 111 1
lowQualScore : 2 1 444444 77777 66 222 3 5555555 3 1 33 66666 555 888888 4 666 22 6 3333333333 555 3 44 3 66 3 3 6 222 1 0 1 6666666 77 44444444444444444444 3333 888 22 2 333 1 77777777 3333 1 4 4 4
lowQualScore : . . ...... ..... .. ... . ....... . . .. ..... ... ...... . ... .. . .......... ... . .. . .. . . . ... . . . ....... .. .................... .... ... .. . ... . ........ .... . . . .
lowQualScore : 6 8 888888 11111 33 999 1 4444444 4 7 66 77777 000 222222 8 666 88 0 5555555555 444 1 22 1 00 5 2 2 000 5 5 7 2222222 66 55555555555555555555 7777 777 22 0 888 5 11111111 3333 5 7 5 6
consensus : GGGTCGTA-TTCACCAACCATTCTTGAGAAT------AT----TCT-TA---GACTTGAGC-------TCGAAAA-TCCAA-ATTTC----AAC---CT------TAGATATCTAGT--TTACCATGACAGATAGAATAATTGTGAG----------AG---TTTA-TTTGAC--TA-TATATTAG-TGTGTCCCTACATGCTTGCAAATTTTGGTCTCAAAAANTGG-TCTCT-------AAGT-NTG-TTTTTC-------------AA----AATTC--A--TTTTC-GAGCTCAAG-TCT--------AAGAA----T-ATTCTCAAGAATGGTTGGTGAATATC
Reference ( gi|3 ) : GGGTAGTA-TTCACCAACCATTCTTGAGAAT------AG----TCT-AA---GACTTAAGC-------TCGAAAA-TCCAA-CTTTC----AAC---CT------TAGATATCTGGG--TTACCATGACAAGTAGAACAATTGTGAG----------AG---TTTA-TTTGAC--TA-TATATTAGGTGTGTCCCTACAGGCTTGCAAACTTTGGTCTCAAACACTGG-TCTCT-------AAGT-TTG-TTTTTT------------AAA----AATTC--A--TTCTT-GAGTTCAAG-TCT--------AAGAA----T-ATTCTGAAAAATGGTTGGTGAGTATCA
gi|2 : GGGTTGTAATTTACCAAACATTATTGAGAAT------AT----TCT-TA---GACTTGAGC-------TTGAAAA-TCCAA-CTTTC----AAC---CT------TAGATATCTAGT--TCAACATGACAGATAGAATACTTGTGAG----------AT---TTTA-TTTGTC--TA-TATATTAG--GTGTTCCTATATGCTTCCAAAATTTGGCCTCAAA-AATGG-TGTCT-------AAGT-GCGTTTTTTT------------CAA----GATTC--A--ATCTT-GAGTTCAAG-TTTAAAGTCTAAAGAA----T-ATTCTT-AGAACGGTTGATGAA
gi|5 : GGGTTGTA-TTCACCAATCATTCCTGAGAAT------AT----TCT-TG---GACTTCAGC-------TTGAACT-TTCAA-ATTTC----AAC---CTTACTTGTAGGTATCTAGT--TCACCTTGACCAACAGAATAATTGTGAG----------GG---TTTA-TTTGAC--TATTATATTAGGTGT----CTATCTGTTTGCAAACTTTGGTTTCAAAATAGGG-TTTTT-------AAGT-GTG-TTTTTC-------------AA----AACTC--G--TTTT---AGTTCAAG-TCT--------A--AA----T-ATTCTTAAAAATGGTTGGTGAg
gi|13 : tgGGATCATA-TTCACCGACCATTTTTGAGAAT------AT----TCTTAA---GACTTGAGC-------TTGAAAA-TCAAAATTTTC----AAC---CT------TAGATATCTAGT--TTATCGTGACATATAGAATAATGGTGAG----------AG---TTTG-TGTGAC--TA-TATGTAAGATATCTCCCTACATGCTTACACGTTTTTGTCTCAAAAGAT-G-TCTCT-------AAGT-GTA-TTTTT
gi|4 : GGGTCATA-CTCACCAACCATTCTTGAGAAT------AC----TCT-TA---GATTTGAGC-------ATGATAA-TCCA------------------T------TAAATATCTAAG--TTATCATGACAGATAGAATATGTGTCAT----------GGTTTTTTT-TTTTACTGTA-TATATTA-TTATGTTCCTACATGCTTGCAAATTTTGGCCT-AAAGA-TGG-TCTCT-------AAGTATTG-TTTTTTTTTTTCAACAAAAAA----AATT---A--TTCTC-AAGCTTAAG-TCT--------AAGAA----T-ATTTCTAAGAATGATTAGTatgcctcccaaaatttttat
gi|10 : aGGTCGTA-TTCACCAACCATTCTTGAGAAT------A-------T-AATTAGACTTGAGG-------TTAAAAA-TCCAA-ATTTC----AAC---CT------TAGATATCTAGT--TTATCATGA------GAATAATTGTGAG----------TG---TTTA-TATGAC--TA-TATATTAGGTGT--CCCTACATGCTTGCAAATTTTGGTCTCAAAAAATAG-TCTCT-------AAGT-AAA-TTTGTC------------CAA----AATTT--A--TTCTT-GAGTTCAAG-TCT--------AAGAA----T-ATTTTTAAGAACGGTTGGTGAATAa
gi|12 : GGTCACA-TTCACCAACTATTCTTGAGAAT------AT----TCT-TA---GACTTGAGC-------TTGAAAA-TCCAA-ATTTA----AAT----T------TAAATATCTAGT--TTACCATGACATATAGAATAATTGTGAG----------AG---CTTA-TTTGAC--TA-TATATTAG--GTGTCCTTACATGCTTACAAATTTTGGTCTCAAA-AATAG-TCTCT-------ACCT-GTG-TTTTTC-------------AA----AATTC--A--TTTTT-GAGTTCAAATTTT--------AAGTG----T-ATTTTTAAGAAc
gi|1 : GGTCATA-TTCACCAACCATTCTTGAAAAT------AT----TCC-AA---GACATGAGC-------TTGGAAA-TCAAA-ATTTC----AAC---CT------TAGATA-ATGGAATTTACCCTGACAGATGGAATAGTTGTGAAATTGCAACTCAG---TTTA-TTTGAC-----TATATTAA--GTGTCACTACATGCTTGCACATTTTGGTCCCAAAAATTGA-TTTTT-------AAGT-GTG-TTTTTC-------------AA----AACTC--G--TTCTT-GAATTCAGG-TCT--------AAGAA----T-AATCTTAAGAACGGCTAGTGAATAT
gi|8 : GATGGTA-TGCACCAACGAGTCTTGTGAAT------AT----TCC-CA---GATTTTAGC-------TTGAAAA-TCCAA-----------AC---TT------TAGATATCTAGT--TTACCATGAGAGATACAATAATTGTGAG----------AA---TTAA-TTTGAC--TA-TATATTAG--GTGTCCCTACATGCTTGCAAGTTTTGATTTAAATAAATAG-TCTCT-------AAGT-GGG-CTTTTC-------------AA----AATCC--A--TGCTT-GAGTTCAAG-ACT--------GCGAA----T-ATTCTCAAGAATGGTTGGTGAATA
gi|11 : gaGGTCGTA-TTCACCAACCAATCTTGAAAAT------AAATATTCT-TA---AACTTGAGC-------TTGAAAA-TC-----TTT---------------------GATATC-AGT--TTACCATGACAGACAGAATAACTGTGAG----------AG---TTTA-TTCGAC--TA-TATATTAG--ATGTCCATACATGCTTGCAAGTTTTGGCATATAAAAATGG-TCTCTAACTCAAAAGT-TTT-TTTTTT------------CAA----AATTC--A--T-------GTTTAAG-TCT--------AAGAC----T-ATGTTTAAGAGTTGTTGGGGAATAc
gi|14 : GGTCGTA-CTCACCAACGAT-CTTGAGAAT------AT----TCT-TA---GACTTGAGC-------TTGAAAA-TCCAG-ATTTC----AAC---CT------TAGATATCTAGT--TTACCATGACAGATAGAATAATTGTGAG----------AG---TTTATTTTTAC--TA-TTTATTAG--GTGTCCCAGCAGGCT
gi|15 : GTCGTA-TTCACCAACCATTCTTGAGAA-------AT----TCT-TA---GATTTGAAC-------TCAAGAA-T-GAA-TTTTG----AAnnnnnnnnnntatatcaatagttgccgtatcatgtgattt
gi|7 : atattcttagacttaagcttgcgacatacttgcagaatttggtctcaaaaattatcattaaatgtgattAATA-TTCAATAACCATTCTGCAGAAT------AT----TCT-TA---AACTTGAAC-------TTAAAAA-T-GAA-TTTTTGAAAAACACACT------TAGATACC
gi|10 : gttcatattcaccaaccattcttgaaaatattcttagccttgagtttgaaaagccaaatttcaaccttaatctaatttaccatgacagatagaatatttgtgagagattatttgactatatattaggtgtccctacatgcttgcaaatatttacctcgataaatGTA-TTCACCAACCGTTCTTAAAAAT------AT----TCT-TA---GACTTGAAC-------TCAAGAA-T
gi|8 : ggtcgtattcaccaaccattcttgagaatataattagacttgaggttaaaaatccaaatttcaaccttagatatctagtttatcatgagaataattgtgagtgtttatatgactatatattaggtgtccctacatgcttgcaaattttggtctcaaaaaatagtctctaagtaaatttgtccaaaatttGTA-TTCACCAACCATTCTTGAGAATATTCGCAG----TCT-TG---AACTCAAGCATGGATTTTGAAAA-GCCCA-CTT
gi|6 : gagatggtatgcaccaacgagtcttgtgaatattcccagattttagcttgaaaatccaaactttagatatctagtttaccatgagagatacaataattgtgagaattaatttgactatatattaggtgtccctacatgcttgcaagttttgatttaaataaatagtctctTA-TTCACCAACCATTCCTGAAAAT------AT----TCT-TA---AATTTAAGC-------TTGACAA-TCCAA-ATTTC----AAT---CT------TAGATATCTAGT--TTACCATGATAGACAAAATAATTGTGAG----------AG---TTTA-TTTGAC--TA-TGTATT--GAATGTCTCTACATGCTTGCAAATTTTGGTTTCAAACAACCG-TCTCT-------AAGT-ATG-TTTTTT------------TTA----AATTC--A--TTTTT-GAGTTTAAG-TCT--------AACAC----T-ATTCCTAAGAATGGTTAGTGAATA
gi|6 : gcgaTA-TTCACTAACCATTCTTAGGAAT------AG----TGT-TA---GACTTAAAC-------TCAAAAA-T
gi|7 : gcgatattcaccaaccattcctgaaaatattcttaaatttaagcttgacaatccaaatttcaatcttagatatctagtttaccatgatagacaaaataattgtgagagtttatttgactatgtattgaatgtctctacatgcttgcaaattttggtttcaaacaaccgtctctaagtatgttttttttaaattcTA-TTCACCAACCATTCTTGAAAAT------AT----TCT-TA---GCCTTGAGT-------TTGAAAA-GCCAA-ATTTC----AAC---CT------TA---ATCTAAT--TTACCATGACAGATAGAATATTTGTGAG----------AG---ATTA-TTTGAC--TA-TATATTAGGTGT--CCCTACATGCTTGCAAATATTTACCTCGATAAATGG-TATCT-------AAGT-GTG-TTTTTC------------AAA----AATTC--A--TTTTT-AAGTTCAAG-TTT--------AAGAA----T-ATTCTGCAGAATGGTTATTGAATAT
gi|1 : gttcaTA-TTCACTAGCCGTTCTTAAGATT------AT----TCT-TA---GACCTGAAT-------TCAAGAA-t
gi|11 : ggtcatattcaccaaccattcttgaaaatattccaagacatgagcttggaaatcaaaatttcaaccttagataatggaatttaccctgacagatggaatagttgtgaaattgcaactcagtttatttgactatattaagtgtcactacatgcttgcacattttggtcccaaaaattgatttttaagtgtgtttttcaaaactcgTA-TTCCCCAACAACTCTTAAACAT------AG----TCT-TA---GACTTAAAC-------ATGAAt
gi|17 : ggtcgtattcaccaaccaatcttgaaaataaatattcttaaacttgagcttgaaaatctttgatatcagtttaccatgacagacagaataactgtgagagtttattcgactatatattagatgtccatacatgcttgcaagttttggcatataaaaatggtctctaactcaaaagttttttttttcaaaaTA-TTCACCAACCGTTCTTGAGAAT------AT----TCT-TA---GAAATGAGC-------CCGAAAG-TCCAA-
gi|9 : ttaA-TTCACCAACCATTTTTGAAAAT------AC----TCT-TA---GACATAAGC-------TTGAAAAATCCAA-ATTTC----AAC---CT------TAGATATCTAAT--TTACCATGACAAATAGAATAATTGTGAG----------A-----TTG-TTTTAC--TC-TATATTGG--GTGTCCCTACATGCTTGCTAATTATGGTCTAAAA---TGG-CTTCT-------TAGTATTG-TTTTTT-------------------AATTA--T--TTCTT-ATGTTCATG-TAT--------ACGAA----TAATTTTAAAGATTGGTTTGTGAATAaa
gi|16 : gatcgA-TTCACAAACCATTATTAAGAAT------AT----TCT-TA---GACTTGAAC-------TCAAGAA-c
gi|5 : tatgattgcaaattttgctctccaagtgcgttttttaaaattacTCACCAACCATTTTTAAGAAT------A-----TTT--A---GACTTGAAC-------T--AAAA-c
gi|4 : tggggttgtattcaccaatcattcctgagaatattcttggacttcagcttgaactttcaaatttcaaccttacttgtaggtatctagttcaccttgaccaacagaataattgtgagggtttatttgactattatattaggtgtctatctgtttgcaaactttggtttcaaaatagggtttttaagtgtgtttttcaaaactcgACTAATCATTCTTAGAAAT------AT----TCT-TA---GACTTAAGC-------TTGAGAA-T--AA-TTTT
gi|15 : agggtcatactcaccaaccattcttgagaatactcttagatttgagcatgataatccattaaatatctaagttatcatgacagatagaatatgtgtcatggtttttttttttactgtatatattattatgttcctacatgcttgcaaattttggcctaaagatggtctctaagtattgtttttttttttcaacaaaaACATACTTGCAGAATTTGGTCTCAAAAATTA--TCATT-------AAAT-GTG-ATTTTC------------AAA----A-TTC--A--TTCTT-GAGTTCAAA-TCT--------AAGAA----T--TTCTCAAGAATGGTTGGTGAATAa
gi|16 : atattcttagacttaagcttgcgTGATTGCAAATTTTGC-TCTCC-------AAGT-GCG-TTTTTT------------AAA----A-TTA--C--TTCTT-GAGTTCAAG-TCT--------AAGAA----T-ATTCTTAATAATGGTTTGTGAAcgac
gi|10 : taACTAGATATCT-------AAGG-TTG---------------------A----AATTTGGA--TTTTT-AACCTCAAG-TCT--------AATTA----T-ATTCTCAAGAATGGTTGGTGAATAc
gi|6 : ggtcgACTAGATATCT-------AAGA-TTG---------------------A----AATTTGGA--TTGTC-AAGCTTAAA-TTT--------AAGAA----T-ATTTTCAGGAATGGTTGGTGAATATCttatcatgagaataattgtgagtgtttatatgactatatattaggtgtccctacatgcttgcaaattttggtctcaaaaaatagtctctaagtaaatttgtccaaaatttattcttgagttcaagtctaagaatatttttaagaacggttggtgaatac
gi|2 : gcACTAGATATCT-------AAGG-TTG--------------------AA----AGTTGG-A--TTTTC-AAGCTCAAG-TCT--------AAGAA----T-ATTCTCAATAATGTTTGGTAAAttaccatgatagacaaaataattgtgagagtttatttgactatgtattgaatgtctctacatgcttgcaaattttggtttcaaacaaccgtctctaagtatgttttttttaaattcatttttgagtttaagtctaacactattcctaagaatggttagtgaata
gi|13 : gggttgtaACTAGATATCT-------AAGG-TTG--------------------AA----AATTTTGA--TTTTC-AAGCTCAAG-TCTT-------AAGAA----T-ATTCTCAAAAATGGTCGGTGAATATtcaacatgacagatagaatacttgtgagattttatttgtctatatattaggtgttcctatatgcttccaaaatttggcctcaaaaatggtgtctaagtgcgtttttttcaagattcaatcttgagttcaagtttaaagtctaaagaatattcttagaacggttgatgaatg
gi|14 : ggatcACTAGATATCT-------AAGG-TTG---------------------A----AATCTGGA--TTTTC-AAGCTCAAG-TCT--------AAGAA----T-ATTCT-CAAGATCGTTGGTGAGTAttatcgtgacatatagaataatggtgagagtttgtgtgactatatgtaagatatctccctacatgcttacacgtttttgtctcaaaagatgtctctaagtgtatttttatgcctcccaaaatttttat
gi|1 : ggtcgTCT-------AAGG-TTG---------------------A----AATTTTGA--TTTCC-AAGCTCATG-TCT--------TGGAA----T-ATTTTCAAGAATGGTTGGTGAATATttaccatgacagatagaataattgtgagagtttatttttactatttattaggtgtcccagcaggctnnnnnnnnnntatatcaatagttgccgtatcatgtgattt
gi|9 : ggtcTCT-------AAGG-TTG---------------------A----AATTTGGA--TTTTTCAAGCTTATG-TCT--------AAGAG----T-ATTTTCAAAAATGGTTGGTGAAtaatggaatttaccctgacagatggaatagttgtgaaattgcaactcagtttatttgactatattaagtgtcactacatgcttgcacattttggtcccaaaaattgatttttaagtgtgtttttcaaaactcgttcttgaattcaggtctaagaataatcttaagaacggctagtgaatat
gi|12 : gatcgTTT------------AAATTTAAATTTGGA--TTTTC-AAGCTCAAG-TCT--------AAGAA----T-ATTCTCAAGAATAGTTGGTGAATGTtatctaatttaccatgacaaatagaataattgtgagattgttttactctatattgggtgtccctacatgcttgctaattatggtctaaaatggcttcttagtattgttttttaattatttcttatgttcatgtatacgaataattttaaagattggtttgtgaatac
gi|5 : ggtcTTT------------GAA----AGTTC--A---------AGCTGAAG-TCC--------AAGAA----T-ATTCTCAGGAATGATTGGTGAATAtatctagtttaccatgacatatagaataattgtgagagcttatttgactatatattaggtgtccttacatgcttacaaattttggtctcaaaaatagtctctacctgtgtttttcaaaattcatttttgagttcaaattttaagtgtatttttaagaa
gi|7 : tggggttgA----AATTT--GGCTTTTC-AAACTCAAG-GCT--------AAGAA----T-ATTTTCAAGAATGGTTGGTGAATATtttcaaccttacttgtaggtatctagttcaccttgaccaacagaataattgtgagggtttatttgactattatattaggtgtctatctgtttgcaaactttggtttcaaaatagggtttttaagtgtgtttttcaaaactcgttttagttcaagtctaaatattcttaaaaatggttggtga
gi|11 : gttc--A--TTTTC-AAGCTCAAG-TTT--------AAGAATATTT-ATTTTCAAGATTGGTTGGTGAATAcaaccttaatctaatttaccatgacagatagaatatttgtgagagattatttgactatatattaggtgtccctacatgcttgcaaatatttacctcgataaatggtatctaagtgtgtttttcaaaaattcatttttaagttcaagtttaagaatattctgcagaatggttattgaatatt
gi|17 : ggtcg--A--CTTTC-GGGCTCATT-TCT--------AAGAA----T-ATTCTCAAGAACGGTTGGTGAATATctttgatatcagtttaccatgacagacagaataactgtgagagtttattcgactatatattagatgtccatacatgcttgcaagttttggcatataaaaatggtctctaactcaaaagttttttttttcaaaattcatgtttaagtctaagactatgtttaagagttgttggggaata
gi|4 : ttGCTCAAA-TCT--------AAGAG----T-ATTCTCAAGAATGGTTGGTGAGTATccaaaa
Alignments
lowQualScore : 11111111111111 33 2222222222222222222222 11111111
lowQualScore : 2 5555 2 4 2 2 888888 2 44444444444444 2 33 2 2 00 6 0 8888888 2 66 66 2 5555555555555555555555 1 7 2 4 2 00000000 2 5
lowQualScore : . .... . . . . ...... . .............. . .. . . .. . . ....... . .. .. . ...................... . . . . . ........ . .
lowQualScore : 7 3333 5 0 7 9 222222 9 00000000000000 9 99 9 9 77 8 2 7777777 7 33 33 7 0000000000000000000000 3 9 9 9 9 44444444 9 6
consensus : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTGTCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-T-GTG--TTT-TT--------C-------------AAAATTCATTCTTGA-GTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
Reference ( family-5548 ) : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTCGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G-TGTGTCCCTACATGCTTGCAAATTTTGGTCTCAAAAANTGGTCTCT-------AAG-T-NTG--TTT-TT--------C-------------AAAATTCATTTTCGA-GCTCAAG-TCT--------AAGAAT-ATTCTCAAGAATGGTTGGTGAATATC
gi|1 : GGTCATA-TTCACCAACCATTCTTGAAAATA----TTCCAA-GACATGAGCTTGGAAA-TCAAAATTT-CAACCT------TAGATAATGGAATTTACCCTGACAGATGGAATAGTTGTGAAATTGCAACTCAG---TTTA-TTTGAC--TA-TAT--TA-A--GTGTCACTACATGCTTGCACATTTTGGTCCCAAAAATTGATTTTT-------AAG-T-GTG--TTT-TT--------C-------------AAAACTCGTTCTTGA-ATTCAGG-TCT--------AAGAAT-AATCTTAAGAACGGCTAGTGAATAT
gi|10 : GGTCGTA-TTCACCAACCATTCTTGAGAATA----TAATTA-GACTTGAGGTTAAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTATCATG------AGAATAATTGTGAGT----------G---TTTA-TATGAC--TA-TATATTA-G--GTGTCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATAGTCTCT-------AAG-T-AAA--TTTGTC--------C-------------AAAATTTATTCTTGA-GTTCAAG-TCT--------AAGAAT-ATTTTTAAGAACGGTTGGTGAATA
gi|11 : GGTCGTA-TTCACCAACCAATCTTGAAAATAAATATTCTTA-AACTTGAGCTTGAAAA-TC----TTT---------------GATA-TC-AGTTTACCATGACAGACAGAATAACTGTGAGA----------G---TTTA-TTCGAC--TA-TATATTA-G--ATGTCCATACATGCTTGCAAGTTTTGGCATATAAAAATGGTCTCTAACTCAAAAGTT-TTT--TTT-TT--------C-------------AAAATTCAT-------GTTTAAG-TCT--------AAGACT-ATGTTTAAGAGTTGTTGGGGAATAc
gi|12 : GGTCACA-TTCACCAACTATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-AAAT-T------TAAATA-TCTAGTTTACCATGACATATAGAATAATTGTGAGA----------G---CTTA-TTTGAC--TA-TATATTA-G--GTGTCCTTACATGCTTACAAATTTTGGTCTCAAAAA-TAGTCTCT-------ACC-T-GTG--TTT-TT--------C-------------AAAATTCATTTTTGA-GTTCAAATTTT--------AAGTGT-ATTTTTAAGAA
gi|13 : GGATCATA-TTCACCGACCATTTTTGAGAATA----TTCTTAAGACTTGAGCTTGAAAA-TCAAAATTTTCAACCT------TAGATA-TCTAGTTTATCGTGACATATAGAATAATGGTGAGA----------G---TTTG-TGTGAC--TA-TATGTAA-GATATCTCCCTACATGCTTACACGTTTTTGTCTCAAAAGAT-GTCTCT-------AAG-T-GTA--TTT-TTATGCCTCCC-------------AAAATT
gi|14 : GGTCGTA-CTCACCAACGAT-CTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAGATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTATTTTTAC--TA-TTTATTA-G--GTGTCCCAGCAGGCTNNNNNNNNNNTATATCAATAGTTGtttat
gi|15 : ATA----TTCTTA-GACTTAAGCTTGccgtatcatgtgattt
gi|15 : ACATACTTGCAGAATTTGGTCTCAAAAATTA-TCATT-------AAA-T-GTG--ATT-TT--------C-------------AAAATTCATTCTTGA-GTTCAAA-TCT--------AAGAAT--TTCTCAAGAATGGTTGGTGAATAcgacatacttgcagaatttggtctcaaaaattatcattaaatgtgattttcaaaattcattcttgagttcaaatctaagaatttctcaagaatggttggtgaatacgac
gi|16 : atattcttagacttaagcttgcgATGATTGCAAATTTTG----C---------TCTCC-------AAG-T-GCG--TTT-TT--------T-------------AAAATTACTTCTTGA-GTTCAAG-TCT--------AAGAAT-ATTCTTAATAATGGTTTGTGAATcgac
gi|17 : tTA-TTCACCAACCGTTCTTGAGAATA----TTCTTA-GAAATGAGCCCGAAAG-TCCAAAc
gi|2 : ttaGGGTTGTAATTTACCAAACATTATTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTAGTTCAACATGACAGATAGAATACTTGTGAGA----------T---TTTA-TTTGTC--TA-TATATTA-G--GTGTTCCTATATGCTTCCAAAATTTGGCCTCAAAAA-TGGTGTCT-------AAG-T-GCGTTTTT-TT--------C-------------AAGATTCAATCTTGA-GTTCAAG-TTTAAAGTCTAAAGAAT-ATTCTT-AGAACGGTTGATGAATa
gi|3 : GGGTAGTA-TTCACCAACCATTCTTGAGAATA----GTCTAA-GACTTAAGCTCGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTGGGTTACCATGACAAGTAGAACAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTAGG-TGTGTCCCTACAGGCTTGCAAACTTTGGTCTCAAACACTGGTCTCT-------AAG-T-TTG--TTT-TT--------TA------------AAAATTCATTCTTGA-GTTCAAG-TCT--------AAGAAT-ATTCTGAAAAATGGTTGGTGAGTATCg
gi|4 : GGGTCATA-CTCACCAACCATTCTTGAGAATA----CTCTTA-GATTTGAGCATGATAA-TCCA-----------T------TAAATA-TCTAAGTTATCATGACAGATAGAATATGTGTCATG----------GTTTTTTT-TTTTACTGTA-TATATTA-T-TATGTTCCTACATGCTTGCAAATTTTGGCCT--AAAGATGGTCTCT-------AAG-TATTG--TTT-TT--------TTTTTTCAACAAAAAAAATT-ATTCTCAA-GCTTAAG-TCT--------AAGAAT-ATTTCTAAGAATGATTAGTa
gi|5 : aGGGTTGTA-TTCACCAATCATTCCTGAGAATA----TTCTTG-GACTTCAGCTTGAACT-TTCAAATTT-CAACCTTACTTGTAGGTA-TCTAGTTCACCTTGACCAACAGAATAATTGTGAGG----------G---TTTA-TTTGAC--TATTATATTA-G--GTGT--CTATCTGTTTGCAAACTTTGGTTTCAAAATAGGGTTTTT-------AAG-T-GTG--TTT-TT--------C-------------AAAACTCGTTTT--A-GTTCAAG-TCT--------A--AAT-ATTCTTAAAAATGGTTGGTGAa
gi|6 : tgTA-TTCACCAACCATTCCTGAAAATA----TTCTTA-AATTTAAGCTTGACAA-TCCAAATTT-CAATCT------TAGATA-TCTAGTTTACCATGATAGACAAAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TGTATT--G-AATGTCTCTACATGCTTGCAAATTTTGGTTTCAAACAACCGTCTCT-------AAG-T-ATGT-TTT-TT--------T-------------TAAATTCATTTTTGA-GTTTAAG-TCT--------AACACT-ATTCCTAAGAATGGTTAGTGAATA
gi|7 : gcgaTCATA-TTCACCAACCATTCTTGAAAATA----TTCTTA-GCCTTGAGTTTGAAAA-GCCAAATTT-CAACCT------TA---A-TCTAATTTACCATGACAGATAGAATATTTGTGAGA----------G---ATTA-TTTGAC--TA-TATATTA-G--GTGTCCCTACATGCTTGCAAATATTTACCTCGATAAATGGTATCT-------AAG-T-GTG--TTT-TT--------CA------------AAAATTCATTTTTAA-GTTCAAG-TTT--------AAGAAT-ATTCTGCAGAATGGTTATTGAATAT
gi|8 : gtGTA-TGCACCAACGAGTCTTGTGAATA----TTCCCA-GATTTTAGCTTGAAAA-TCCAAA-------CTT------TAGATA-TCTAGTTTACCATGAGAGATACAATAATTGTGAGA----------A---TTAA-TTTGAC--TA-TATATTA-G--GTGTCCCTACATGCTTGCAAGTTTTGATTTAAATAAATAGTCTCT-------AAG-T-GGG--CTT-TT--------C-------------AAAATCCATGCTTGA-GTTCAAG-ACT--------GCGAAT-ATTCTCAAGAATGGTTGGTGAATAt
gi|9 : gagatgGATCG-A-TTCACCAACCATTTTTGAAAATA----CTCTTA-GACATAAGCTTGAAAAATCCAAATTT-CAACCT------TAGATA-TCTAATTTACCATGACAAATAGAATAATTGTGAGA---------------TTG-TTTTAC--TC-TATATTG-G--GTGTCCCTACATGCTTGCTAATTATGGTCT---AAAATGGCTTCT-------TAG-TATTG--TTT-TT--------T-------------AA---TTATTTCTTATGTTCATG-TAT--------ACGAATAATTTTAAAGATTGGTTTGTGAATAc
Alignments
lowQualScore : 11111111111111 2222222222222222222222 11111111
lowQualScore : 2 5555 2 2 2 888888 2 44444444444444 2 33 2 2 33 33 6 1 8888888 2 5 66 2 5555555555555555555555 2 00000000 2
lowQualScore : . .... . . . ...... . .............. . .. . . .. .. . . ....... . . .. . ...................... . ........ .
lowQualScore : 7 3333 5 7 9 222222 9 00000000000000 9 99 9 9 99 99 7 5 7777777 7 3 33 7 0000000000000000000000 9 44444444 9
consensus : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
Reference ( family-5548 ) : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
gi|1 : GGTCATA-TTCACCAACCATTCTTGAAAATA----TTCCAA-GACATGAGCTTGGAAA-TCAAAATTT-CAACCT------TAGATAATGGAATTTACCCTGACAGATGGAATAGTTGTGAAATTGCAACTCAG---TTTA-TTTGAC--TA-TAT--TA-A--GTG--TCACTACATGCTTGCACATTTTGGTCCCAAAAATTGATTTTT-------AAG-TG-TG--TTT-TT--------C-------------AAAACTCGTTCTTGAATTCAGG-TCT--------AAGAAT-AATCTTAAGAACGGCTAGTGAATAT
gi|10 : GGTCGTA-TTCACCAACCATTCTTGAGAATA----TAATTA-GACTTGAGGTTAAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTATCATGA------GAATAATTGTGAGT----------G---TTTA-TATGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATAGTCTCT-------AAG-TA-AA--TTTGTC--------C-------------AAAATTTATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTTTTAAGAACGGTTGGTGAATA
gi|11 : GGTCGTA-TTCACCAACCAATCTTGAAAATAAATATTCTTA-AACTTGAGCTTGAAAA-TC----TTT---------------GATA-TC-AGTTTACCATGACAGACAGAATAACTGTGAGA----------G---TTTA-TTCGAC--TA-TATATTA-G--ATG--TCCATACATGCTTGCAAGTTTTGGCATATAAAAATGGTCTCTAACTCAAAAGTTT-TT--TTT-TT--------C-------------AAAATTCAT------GTTTAAG-TCT--------AAGACT-ATGTTTAAGAGTTGTTGGGGAATAc
gi|12 : GGTCACA-TTCACCAACTATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-AAAT-T------TAAATA-TCTAGTTTACCATGACATATAGAATAATTGTGAGA----------G---CTTA-TTTGAC--TA-TATATTA-G--GTG--TCCTTACATGCTTACAAATTTTGGTCTC-AAAAATAGTCTCT-------ACC-TG-TG--TTT-TT--------C-------------AAAATTCATTTTTGAGTTCAAATTTT--------AAGTGT-ATTTTTAAGAA
gi|13 : GGATCATA-TTCACCGACCATTTTTGAGAATA----TTCTTAAGACTTGAGCTTGAAAA-TCAAAATTTTCAACCT------TAGATA-TCTAGTTTATCGTGACATATAGAATAATGGTGAGA----------G---TTTG-TGTGAC--TA-TATGTAA-G--ATATCTCCCTACATGCTTACACGTTTTTGTCTCAAAAGAT-GTCTCT-------AAG-TG-TA--TTT-TTATGCCTCCC-------------AAAATT
gi|14 : GGTCGTA-CTCACCAACGAT-CTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAGATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTATTTTTAC--TA-TTTATTA-G--GTG--TCCCAGCAGGCTtttat
gi|15 : ATA----TTCTTA-GACTTAAGCTTGnnnnnnnnnntatatcaatagttgccgtatcatgtgattt
gi|15 : ACATACTTGCAGAATTTGGTCTCAAAAA-TTATCATT-------AAA-TG-TG--ATT-TT--------C-------------AAAATTCATTCTTGAGTTCAAA-TCT--------AAGAAT--TTCTCAAGAATGGTTGGTGAATAcgacatacttgcagaatttggtctcaaaaattatcattaaatgtgattttcaaaattcattcttgagttcaaatctaagaatttctcaagaatggttggtgaatacgac
gi|16 : atattcttagacttaagcttgcgATGATTGCAAATTTTG----C---------TCTCC-------AAG-TG-CG--TTT-TT--------T-------------AAAATTACTTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAATAATGGTTTGTGAATcgac
gi|17 : tTA-TTCACCAACCGTTCTTGAGAATA----TTCTTA-GAAATGAGCCCGAAAG-TCCAAAc
gi|2 : ttaGGGTTGTAATTTACCAAACATTATTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTAGTTCAACATGACAGATAGAATACTTGTGAGA----------T---TTTA-TTTGTC--TA-TATATTA-G--GTG--TTCCTATATGCTTCCAAAATTTGGCCTC-AAAAATGGTGTCT-------AAG-TG-CGTTTTT-TT--------C-------------AAGATTCAATCTTGAGTTCAAG-TTTAAAGTCTAAAGAAT-ATTCTT-AGAACGGTTGATGAATa
gi|3 : GGGTAGTA-TTCACCAACCATTCTTGAGAATA----GTCTAA-GACTTAAGCTCGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTGGGTTACCATGACAAGTAGAACAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-GGTGTG--TCCCTACAGGCTTGCAAACTTTGGTCTCAAACACTGGTCTCT-------AAG-TT-TG--TTT-TT--------TA------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTGAAAAATGGTTGGTGAGTATCg
gi|4 : GGGTCATA-CTCACCAACCATTCTTGAGAATA----CTCTTA-GATTTGAGCATGATAA-TCCA-----------T------TAAATA-TCTAAGTTATCATGACAGATAGAATATGTGTCATG----------GTTTTTTT-TTTTACTGTA-TATATTATT--ATG--TTCCTACATGCTTGCAAATTTTGGCCT--AAAGATGGTCTCT-------AAG-TATTG--TTT-TT--------TTTTTTCAACAAAAAAAATT-ATTCTCAAGCTTAAG-TCT--------AAGAAT-ATTTCTAAGAATGATTAGTa
gi|5 : aGGGTTGTA-TTCACCAATCATTCCTGAGAATA----TTCTTG-GACTTCAGCTTGAACT-TTCAAATTT-CAACCTTACTTGTAGGTA-TCTAGTTCACCTTGACCAACAGAATAATTGTGAGG----------G---TTTA-TTTGAC--TATTATATTA-G--GTG--T--CTATCTGTTTGCAAACTTTGGTTTCAAAATAGGGTTTTT-------AAG-TG-TG--TTT-TT--------C-------------AAAACTCGTTTT--AGTTCAAG-TCT--------A--AAT-ATTCTTAAAAATGGTTGGTGAa
gi|6 : tgTA-TTCACCAACCATTCCTGAAAATA----TTCTTA-AATTTAAGCTTGACAA-TCCAAATTT-CAATCT------TAGATA-TCTAGTTTACCATGATAGACAAAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TGTATTG-A--ATG--TCTCTACATGCTTGCAAATTTTGGTTTCAAACAACCGTCTCT-------AAG-TA-TGT-TTT-TT--------T-------------TAAATTCATTTTTGAGTTTAAG-TCT--------AACACT-ATTCCTAAGAATGGTTAGTGAATA
gi|7 : gcgaTCATA-TTCACCAACCATTCTTGAAAATA----TTCTTA-GCCTTGAGTTTGAAAA-GCCAAATTT-CAACCT------TA---A-TCTAATTTACCATGACAGATAGAATATTTGTGAGA----------G---ATTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATATTTACCTCGATAAATGGTATCT-------AAG-TG-TG--TTT-TT--------CA------------AAAATTCATTTTTAAGTTCAAG-TTT--------AAGAAT-ATTCTGCAGAATGGTTATTGAATAT
gi|8 : gtGTA-TGCACCAACGAGTCTTGTGAATA----TTCCCA-GATTTTAGCTTGAAAA-TCCAAA-------CTT------TAGATA-TCTAGTTTACCATGAGAGATACAATAATTGTGAGA----------A---TTAA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAGTTTTGATTTAAATAAATAGTCTCT-------AAG-TG-GG--CTT-TT--------C-------------AAAATCCATGCTTGAGTTCAAG-ACT--------GCGAAT-ATTCTCAAGAATGGTTGGTGAATAt
gi|9 : gagatgGATCG-A-TTCACCAACCATTTTTGAAAATA----CTCTTA-GACATAAGCTTGAAAAATCCAAATTT-CAACCT------TAGATA-TCTAATTTACCATGACAAATAGAATAATTGTGAGA---------------TTG-TTTTAC--TC-TATATTG-G--GTG--TCCCTACATGCTTGCTAATTATGGTCT---AAAATGGCTTCT-------TAG-TATTG--TTT-TT--------T---------------AATTATTTCTTATGTTCATG-TAT--------ACGAATAATTTTAAAGATTGGTTTGTGAATAc
Alignments
lowQualScore : 11111111111111 2222222222222222222222 11111111
lowQualScore : 2 5555 2 2 2 888888 2 44444444444444 2 33 2 2 33 33 6 1 8888888 2 5 66 2 5555555555555555555555 2 00000000 2
lowQualScore : . .... . . . ...... . .............. . .. . . .. .. . . ....... . . .. . ...................... . ........ .
lowQualScore : 7 3333 5 7 9 222222 9 00000000000000 9 99 9 9 99 99 7 5 7777777 7 3 33 7 0000000000000000000000 9 44444444 9
consensus : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
Reference ( family-5548 ) : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
gi|1 : GGTCATA-TTCACCAACCATTCTTGAAAATA----TTCCAA-GACATGAGCTTGGAAA-TCAAAATTT-CAACCT------TAGATAATGGAATTTACCCTGACAGATGGAATAGTTGTGAAATTGCAACTCAG---TTTA-TTTGAC--TA-TAT--TA-A--GTG--TCACTACATGCTTGCACATTTTGGTCCCAAAAATTGATTTTT-------AAG-TG-TG--TTT-TT--------C-------------AAAACTCGTTCTTGAATTCAGG-TCT--------AAGAAT-AATCTTAAGAACGGCTAGTGAATAT
gi|10 : GGTCGTA-TTCACCAACCATTCTTGAGAATA----TAATTA-GACTTGAGGTTAAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTATCATGA------GAATAATTGTGAGT----------G---TTTA-TATGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATAGTCTCT-------AAG-TA-AA--TTTGTC--------C-------------AAAATTTATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTTTTAAGAACGGTTGGTGAATA
gi|11 : GGTCGTA-TTCACCAACCAATCTTGAAAATAAATATTCTTA-AACTTGAGCTTGAAAA-TC----TTT---------------GATA-TC-AGTTTACCATGACAGACAGAATAACTGTGAGA----------G---TTTA-TTCGAC--TA-TATATTA-G--ATG--TCCATACATGCTTGCAAGTTTTGGCATATAAAAATGGTCTCTAACTCAAAAGTTT-TT--TTT-TT--------C-------------AAAATTCAT------GTTTAAG-TCT--------AAGACT-ATGTTTAAGAGTTGTTGGGGAATAc
gi|12 : GGTCACA-TTCACCAACTATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-AAAT-T------TAAATA-TCTAGTTTACCATGACATATAGAATAATTGTGAGA----------G---CTTA-TTTGAC--TA-TATATTA-G--GTG--TCCTTACATGCTTACAAATTTTGGTCTC-AAAAATAGTCTCT-------ACC-TG-TG--TTT-TT--------C-------------AAAATTCATTTTTGAGTTCAAATTTT--------AAGTGT-ATTTTTAAGAA
gi|13 : GGATCATA-TTCACCGACCATTTTTGAGAATA----TTCTTAAGACTTGAGCTTGAAAA-TCAAAATTTTCAACCT------TAGATA-TCTAGTTTATCGTGACATATAGAATAATGGTGAGA----------G---TTTG-TGTGAC--TA-TATGTAA-G--ATATCTCCCTACATGCTTACACGTTTTTGTCTCAAAAGAT-GTCTCT-------AAG-TG-TA--TTT-TTATGCCTCCC-------------AAAATT
gi|14 : GGTCGTA-CTCACCAACGAT-CTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAGATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTATTTTTAC--TA-TTTATTA-G--GTG--TCCCAGCAGGCTtttat
gi|15 : ATA----TTCTTA-GACTTAAGCTTGnnnnnnnnnntatatcaatagttgccgtatcatgtgattt
gi|15 : ACATACTTGCAGAATTTGGTCTCAAAAA-TTATCATT-------AAA-TG-TG--ATT-TT--------C-------------AAAATTCATTCTTGAGTTCAAA-TCT--------AAGAAT--TTCTCAAGAATGGTTGGTGAATAcgacatacttgcagaatttggtctcaaaaattatcattaaatgtgattttcaaaattcattcttgagttcaaatctaagaatttctcaagaatggttggtgaatacgac
gi|16 : atattcttagacttaagcttgcgATGATTGCAAATTTTG----C---------TCTCC-------AAG-TG-CG--TTT-TT--------T-------------AAAATTACTTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAATAATGGTTTGTGAATcgac
gi|17 : tTA-TTCACCAACCGTTCTTGAGAATA----TTCTTA-GAAATGAGCCCGAAAG-TCCAAAc
gi|2 : ttaGGGTTGTAATTTACCAAACATTATTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTAGTTCAACATGACAGATAGAATACTTGTGAGA----------T---TTTA-TTTGTC--TA-TATATTA-G--GTG--TTCCTATATGCTTCCAAAATTTGGCCTC-AAAAATGGTGTCT-------AAG-TG-CGTTTTT-TT--------C-------------AAGATTCAATCTTGAGTTCAAG-TTTAAAGTCTAAAGAAT-ATTCTT-AGAACGGTTGATGAATa
gi|3 : GGGTAGTA-TTCACCAACCATTCTTGAGAATA----GTCTAA-GACTTAAGCTCGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTGGGTTACCATGACAAGTAGAACAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-GGTGTG--TCCCTACAGGCTTGCAAACTTTGGTCTCAAACACTGGTCTCT-------AAG-TT-TG--TTT-TT--------TA------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTGAAAAATGGTTGGTGAGTATCg
gi|4 : GGGTCATA-CTCACCAACCATTCTTGAGAATA----CTCTTA-GATTTGAGCATGATAA-TCCA-----------T------TAAATA-TCTAAGTTATCATGACAGATAGAATATGTGTCATG----------GTTTTTTT-TTTTACTGTA-TATATTATT--ATG--TTCCTACATGCTTGCAAATTTTGGCCT--AAAGATGGTCTCT-------AAG-TATTG--TTT-TT--------TTTTTTCAACAAAAAAAATT-ATTCTCAAGCTTAAG-TCT--------AAGAAT-ATTTCTAAGAATGATTAGTa
gi|5 : aGGGTTGTA-TTCACCAATCATTCCTGAGAATA----TTCTTG-GACTTCAGCTTGAACT-TTCAAATTT-CAACCTTACTTGTAGGTA-TCTAGTTCACCTTGACCAACAGAATAATTGTGAGG----------G---TTTA-TTTGAC--TATTATATTA-G--GTG--T--CTATCTGTTTGCAAACTTTGGTTTCAAAATAGGGTTTTT-------AAG-TG-TG--TTT-TT--------C-------------AAAACTCGTTTT--AGTTCAAG-TCT--------A--AAT-ATTCTTAAAAATGGTTGGTGAa
gi|6 : tgTA-TTCACCAACCATTCCTGAAAATA----TTCTTA-AATTTAAGCTTGACAA-TCCAAATTT-CAATCT------TAGATA-TCTAGTTTACCATGATAGACAAAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TGTATTG-A--ATG--TCTCTACATGCTTGCAAATTTTGGTTTCAAACAACCGTCTCT-------AAG-TA-TGT-TTT-TT--------T-------------TAAATTCATTTTTGAGTTTAAG-TCT--------AACACT-ATTCCTAAGAATGGTTAGTGAATA
gi|7 : gcgaTCATA-TTCACCAACCATTCTTGAAAATA----TTCTTA-GCCTTGAGTTTGAAAA-GCCAAATTT-CAACCT------TA---A-TCTAATTTACCATGACAGATAGAATATTTGTGAGA----------G---ATTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATATTTACCTCGATAAATGGTATCT-------AAG-TG-TG--TTT-TT--------CA------------AAAATTCATTTTTAAGTTCAAG-TTT--------AAGAAT-ATTCTGCAGAATGGTTATTGAATAT
gi|8 : gtGTA-TGCACCAACGAGTCTTGTGAATA----TTCCCA-GATTTTAGCTTGAAAA-TCCAAA-------CTT------TAGATA-TCTAGTTTACCATGAGAGATACAATAATTGTGAGA----------A---TTAA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAGTTTTGATTTAAATAAATAGTCTCT-------AAG-TG-GG--CTT-TT--------C-------------AAAATCCATGCTTGAGTTCAAG-ACT--------GCGAAT-ATTCTCAAGAATGGTTGGTGAATAt
gi|9 : gagatgGATCG-A-TTCACCAACCATTTTTGAAAATA----CTCTTA-GACATAAGCTTGAAAAATCCAAATTT-CAACCT------TAGATA-TCTAATTTACCATGACAAATAGAATAATTGTGAGA---------------TTG-TTTTAC--TC-TATATTG-G--GTG--TCCCTACATGCTTGCTAATTATGGTCT---AAAATGGCTTCT-------TAG-TATTG--TTT-TT--------T---------------AATTATTTCTTATGTTCATG-TAT--------ACGAATAATTTTAAAGATTGGTTTGTGAATAc
blockSeqs : A AATA A A T TACTTG . GTTT T TG T T GT TC A A AACTCAA T T TT G TTTTTTCAACAAAA T AAAGTCTA A
blockSeqs : . . . . . . . G . . . . . . T G . . T T . ATGCCTCCC . . .
blockSeqs : . . . . . . . G . . . . . . A A . . . . . TA . . .
blockSeqs : . . . . . . . G . . . . . . A T . . . . . CA . . .
blockSeqs : . . . . . . . G . . . . . . A G . . . . . C . . .
blockSeqs : . . . . . . . G . . . . . . A G . . . . . C . . .
blockSeqs : . . . . . . . T . . . . . . A G . . . . . C . . .
blockSeqs : . . . . . . . G . . . . . . G G . . . . . C . . .
blockSeqs : . . . . . . . G . . . . . . A C . . . . . T . . .
blockSeqs : . . . . . . . G . . . . . . . G . . . . . C . . .
blockSeqs : . . . . . . . G . . . . . . . A . . . . . C . . .
blockSeqs : . . . . . . . A . . . . . . . G . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . T
blockSeqs : . .
blockSeqCons : G*************
originalCons : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
finalCons : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGAG-------------TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
Alignments
lowQualScore : 11111111111111 2222222222222222222222 11111111
lowQualScore : 2 5555 2 2 2 888888 2 44444444444444 2 33 2 2 33 33 6 1 8888888 2 5 66 2 5555555555555555555555 2 00000000 2
lowQualScore : . .... . . . ...... . .............. . .. . . .. .. . . ....... . . .. . ...................... . ........ .
lowQualScore : 7 3333 5 7 9 222222 9 00000000000000 9 99 9 9 99 99 7 5 7777777 7 3 33 7 0000000000000000000000 9 44444444 9
consensus : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
Reference ( family-5548 ) : GGGTCGTA-TTCACCAACCATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATGGTCTCT-------AAG-TG-TG--TTT-TT--------C-------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAAGAATGGTTGGTGAATATC
gi|1 : GGTCATA-TTCACCAACCATTCTTGAAAATA----TTCCAA-GACATGAGCTTGGAAA-TCAAAATTT-CAACCT------TAGATAATGGAATTTACCCTGACAGATGGAATAGTTGTGAAATTGCAACTCAG---TTTA-TTTGAC--TA-TAT--TA-A--GTG--TCACTACATGCTTGCACATTTTGGTCCCAAAAATTGATTTTT-------AAG-TG-TG--TTT-TT--------C-------------AAAACTCGTTCTTGAATTCAGG-TCT--------AAGAAT-AATCTTAAGAACGGCTAGTGAATAT
gi|10 : GGTCGTA-TTCACCAACCATTCTTGAGAATA----TAATTA-GACTTGAGGTTAAAAA-TCCAAATTT-CAACCT------TAGATA-TCTAGTTTATCATGA------GAATAATTGTGAGT----------G---TTTA-TATGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATTTTGGTCTCAAAAAATAGTCTCT-------AAG-TA-AA--TTTGTC--------C-------------AAAATTTATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTTTTAAGAACGGTTGGTGAATA
gi|11 : GGTCGTA-TTCACCAACCAATCTTGAAAATAAATATTCTTA-AACTTGAGCTTGAAAA-TC----TTT---------------GATA-TC-AGTTTACCATGACAGACAGAATAACTGTGAGA----------G---TTTA-TTCGAC--TA-TATATTA-G--ATG--TCCATACATGCTTGCAAGTTTTGGCATATAAAAATGGTCTCTAACTCAAAAGTTT-TT--TTT-TT--------C-------------AAAATTCAT------GTTTAAG-TCT--------AAGACT-ATGTTTAAGAGTTGTTGGGGAATAc
gi|12 : GGTCACA-TTCACCAACTATTCTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAAATTT-AAAT-T------TAAATA-TCTAGTTTACCATGACATATAGAATAATTGTGAGA----------G---CTTA-TTTGAC--TA-TATATTA-G--GTG--TCCTTACATGCTTACAAATTTTGGTCTC-AAAAATAGTCTCT-------ACC-TG-TG--TTT-TT--------C-------------AAAATTCATTTTTGAGTTCAAATTTT--------AAGTGT-ATTTTTAAGAA
gi|13 : GGATCATA-TTCACCGACCATTTTTGAGAATA----TTCTTAAGACTTGAGCTTGAAAA-TCAAAATTTTCAACCT------TAGATA-TCTAGTTTATCGTGACATATAGAATAATGGTGAGA----------G---TTTG-TGTGAC--TA-TATGTAA-G--ATATCTCCCTACATGCTTACACGTTTTTGTCTCAAAAGAT-GTCTCT-------AAG-TG-TA--TTT-TTATGCCTCCC-------------AAAATT
gi|14 : GGTCGTA-CTCACCAACGAT-CTTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAGATTT-CAACCT------TAGATA-TCTAGTTTACCATGACAGATAGAATAATTGTGAGA----------G---TTTATTTTTAC--TA-TTTATTA-G--GTG--TCCCAGCAGGCTtttat
gi|15 : ATA----TTCTTA-GACTTAAGCTTGnnnnnnnnnntatatcaatagttgccgtatcatgtgattt
gi|15 : ACATACTTGCAGAATTTGGTCTCAAAAA-TTATCATT-------AAA-TG-TG--ATT-TT--------C-------------AAAATTCATTCTTGAGTTCAAA-TCT--------AAGAAT--TTCTCAAGAATGGTTGGTGAATAcgacatacttgcagaatttggtctcaaaaattatcattaaatgtgattttcaaaattcattcttgagttcaaatctaagaatttctcaagaatggttggtgaatacgac
gi|16 : atattcttagacttaagcttgcgATGATTGCAAATTTTG----C---------TCTCC-------AAG-TG-CG--TTT-TT--------T-------------AAAATTACTTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTTAATAATGGTTTGTGAATcgac
gi|17 : tTA-TTCACCAACCGTTCTTGAGAATA----TTCTTA-GAAATGAGCCCGAAAG-TCCAAAc
gi|2 : ttaGGGTTGTAATTTACCAAACATTATTGAGAATA----TTCTTA-GACTTGAGCTTGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTAGTTCAACATGACAGATAGAATACTTGTGAGA----------T---TTTA-TTTGTC--TA-TATATTA-G--GTG--TTCCTATATGCTTCCAAAATTTGGCCTC-AAAAATGGTGTCT-------AAG-TG-CGTTTTT-TT--------C-------------AAGATTCAATCTTGAGTTCAAG-TTTAAAGTCTAAAGAAT-ATTCTT-AGAACGGTTGATGAATa
gi|3 : GGGTAGTA-TTCACCAACCATTCTTGAGAATA----GTCTAA-GACTTAAGCTCGAAAA-TCCAACTTT-CAACCT------TAGATA-TCTGGGTTACCATGACAAGTAGAACAATTGTGAGA----------G---TTTA-TTTGAC--TA-TATATTA-GGTGTG--TCCCTACAGGCTTGCAAACTTTGGTCTCAAACACTGGTCTCT-------AAG-TT-TG--TTT-TT--------TA------------AAAATTCATTCTTGAGTTCAAG-TCT--------AAGAAT-ATTCTGAAAAATGGTTGGTGAGTATCg
gi|4 : GGGTCATA-CTCACCAACCATTCTTGAGAATA----CTCTTA-GATTTGAGCATGATAA-TCCA-----------T------TAAATA-TCTAAGTTATCATGACAGATAGAATATGTGTCATG----------GTTTTTTT-TTTTACTGTA-TATATTATT--ATG--TTCCTACATGCTTGCAAATTTTGGCCT--AAAGATGGTCTCT-------AAG-TATTG--TTT-TT--------TTTTTTCAACAAAAAAAATT-ATTCTCAAGCTTAAG-TCT--------AAGAAT-ATTTCTAAGAATGATTAGTa
gi|5 : aGGGTTGTA-TTCACCAATCATTCCTGAGAATA----TTCTTG-GACTTCAGCTTGAACT-TTCAAATTT-CAACCTTACTTGTAGGTA-TCTAGTTCACCTTGACCAACAGAATAATTGTGAGG----------G---TTTA-TTTGAC--TATTATATTA-G--GTG--T--CTATCTGTTTGCAAACTTTGGTTTCAAAATAGGGTTTTT-------AAG-TG-TG--TTT-TT--------C-------------AAAACTCGTTTT--AGTTCAAG-TCT--------A--AAT-ATTCTTAAAAATGGTTGGTGAa
gi|6 : tgTA-TTCACCAACCATTCCTGAAAATA----TTCTTA-AATTTAAGCTTGACAA-TCCAAATTT-CAATCT------TAGATA-TCTAGTTTACCATGATAGACAAAATAATTGTGAGA----------G---TTTA-TTTGAC--TA-TGTATTG-A--ATG--TCTCTACATGCTTGCAAATTTTGGTTTCAAACAACCGTCTCT-------AAG-TA-TGT-TTT-TT--------T-------------TAAATTCATTTTTGAGTTTAAG-TCT--------AACACT-ATTCCTAAGAATGGTTAGTGAATA
gi|7 : gcgaTCATA-TTCACCAACCATTCTTGAAAATA----TTCTTA-GCCTTGAGTTTGAAAA-GCCAAATTT-CAACCT------TA---A-TCTAATTTACCATGACAGATAGAATATTTGTGAGA----------G---ATTA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAATATTTACCTCGATAAATGGTATCT-------AAG-TG-TG--TTT-TT--------CA------------AAAATTCATTTTTAAGTTCAAG-TTT--------AAGAAT-ATTCTGCAGAATGGTTATTGAATAT
gi|8 : gtGTA-TGCACCAACGAGTCTTGTGAATA----TTCCCA-GATTTTAGCTTGAAAA-TCCAAA-------CTT------TAGATA-TCTAGTTTACCATGAGAGATACAATAATTGTGAGA----------A---TTAA-TTTGAC--TA-TATATTA-G--GTG--TCCCTACATGCTTGCAAGTTTTGATTTAAATAAATAGTCTCT-------AAG-TG-GG--CTT-TT--------C-------------AAAATCCATGCTTGAGTTCAAG-ACT--------GCGAAT-ATTCTCAAGAATGGTTGGTGAATAt
gi|9 : gagatgGATCG-A-TTCACCAACCATTTTTGAAAATA----CTCTTA-GACATAAGCTTGAAAAATCCAAATTT-CAACCT------TAGATA-TCTAATTTACCATGACAAATAGAATAATTGTGAGA---------------TTG-TTTTAC--TC-TATATTG-G--GTG--TCCCTACATGCTTGCTAATTATGGTCT---AAAATGGCTTCT-------TAG-TATTG--TTT-TT--------T---------------AATTATTTCTTATGTTCATG-TAT--------ACGAATAATTTTAAAGATTGGTTTGTGAATAc