lowQualScore : 1 3333 1 222 2222222 111 666666 1111111 111111 2222222222222222 444444444444444444444444444444444444444444444 11 3333333333333 1 777777777777777777
lowQualScore : 7 0 3333 4 7 1 4 111 77777 44 0000000 3 3 7 0 222 666666 44 2222222 2 33 888888 2 888888 3 44 44 3 2 9999999999999999 3 000000000000000000000000000000000000000000000 3 00 3 6666666666666 3 2 6666 66 444444444444444444 3
lowQualScore : . . .... . . . . ... ..... .. ....... . . . . ... ...... .. ....... . .. ...... . ...... . .. .. . . ................ . ............................................. . .. . ............. . . .... .. .................. .
lowQualScore : 0 4 1111 5 8 2 0 000 77777 22 2222222 1 1 8 8 777 555555 22 8888888 9 66 222222 9 111111 3 33 66 3 1 9999999999999999 1 999999999999999999999999999999999999999999999 6 55 6 3333333333333 9 5 8888 99 777777777777777777 0
consensus : NTGGAAAGTCCCACATGT-TGGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTTT-CTTTCCGTTTCTTTC-----AA--TATN--TAGTG-TA-ACTTATCGTGAAATGATTACTTA------CA--TT-T-----T-T-CTA------TTCTGTTAT-T-----ATATTTTT-CTA-TTG--T-ATAT--AT-----CG-----ATAATTTGGAC-AAAAATAC-CTTTG-TTT--T--------G----AAAN--A----N--ACATTCTG-TGTCGGCCA-TCTT----TACGCG-ACTTTGCATCACGTGATC-GACACGTG--ATTC------AGC--T-C----TGAGAAGTCTATA
Reference ( gi|7 ) : GTGGTAAATCTCACATATATGGAATGAGACATCATCTGTGGAATTTTATGCGAACGACTTT-CTTTCCGATTCTTTC-----AA--TATT--TAGTG-TA-ATTTATCATGAAATGACCGCTTA-AC-CTTA--TT-T-----T-T-CTA------TTCTGTTAT-T-----TTATTTTT-CTA-TTG--T-ATAT--GT-----TA-----ATAATTTGGAC-AAAAACAC-CTTCG-TTT--T--------G----AAAT--A----T--ACATTCTG-TGTCTGCCA-TCTA----TACGCGCACTTTGCATCACATCATT-GACACATG--ATTC------AGC--T-C----TGAGAAGTTTATA
gi|4 : TGGAAAGTCCCACATAT--GCAAAGAGA----GT-TGTGGAACTTTATGTGAACGTCTTT-CTTTCTGTTTCTTTC-----AAAATATA--TAGTG-TA-ACTTATCTTGGAATGAGAACTTA------CA--TTGT-----T-T-CTA------TTCTGTTAT-T-----ATATTTTT-CTT-TCA--T-ATAT--AC-----CA-----ATAATATGGAC-AAAAATAA-CTC----------------------AAAA--A----T----ATTCCA-TGTCAGCCA-TCTT----TATGTG--CTATGTATCACATAATC-G-CACAT
gi|11 : ataaaaacactgcggtagtgatataacatggttcccaggagtccgtgtcagattgcgatatagactgaaccacgttgttataaatgttgcagctaTGGAAAATCCCACATGT--GGAGTGAGACATCATCTGCGGAA-CTTATGCATATGTCTTT-ATCTCCGTTTCATTC-----AA--TAT-----ATG-TA-ACTTATCGTGtct
gi|17 : aaatacattgcagttccaatataacgtggttcctgggagccaaagaactgaaccgactccaatcgagatatagacggaatcgcattatacatattgcgactaTGGAAAATCTCACAT-T-TGGAGCGCGACATCATCTGTGGTATTTCATTTATACGACTTT-TTGT----TTCCT-------AA--TA----TAATG-TA-ATTGATCGTGAAATGATTATTTA------CA--TT-TA----T-C-CTA------TTCTGTTTT-T-----ATATTT
gi|16 : gctgcgaTGGAAAATCCCACCTGT--GGAGTGAGACATCATCTGTGGAACTTT
gi|5 : ctatgtacactgcattctcaatataatgcagtccctggaagtaaaaaatgttgaccatgatatatagacggaactgtgtttaaatattgcggctaAAGTATCACAT---TAGAATGAGACCTAATCCATGCAATGTTGTGTAAACATCTTT-CTTTCTGTTTCCTAC-----AA--TATA--TAGTG-TA-ACTTATTGTGAAATGATTACATA------TA--TT-T-----T-TTCTG------TTATATAAT-T-----GTATTTCT-CTA-TTG--T-TCAT--AC-----CA-----ATAATTTGGAC-AAAAATAC-CTTTG-TTT--T--------G----AAAA--AAAACA--ATATTCTG-TGTTAGCCT-TCTT----TA--------------CACATGATC-TACACGTG--ATTC------
gi|10 : ataaaAAATCCCCCATGT--GGAGAGAGACATCATATGTGAAAACTTATGC-AACATCTTT-ATTTCTG-TTCTTTC-----AA--T-----------TA-CATTGTCATGAAACGACCACTTACATTCTTA--TT-T-----TGT-ATA------TTCTAGTAT-T-----ATATTTTT-TTA-TTG--T-ATGG--AT-----CA-----AT-------AC-AG--------TTGA-TTTGGC--------G----AAAT--A----T---------------TGCCACTCTATTTTTATGTGCTCTTTGCATCAAATCtgtctagtaagccacctggcgagatgtttatattaaggtcttgatttgcatttggcatactgcatatccggtaaa
gi|18 : tagtcgcagctatcaaAAGTCCCACGTGT--GGAATGAGA-ATTATTTGTGGAACTTTATGCAAA-AATTTTGCTTTCTCTTTCTTTC-----AA--T-TT----GTACCA-ACTTATCTTGAAATGATTACTTA------CA--TT-T----------TA------TTCTGTAAT-T-----TTccac
gi|27 : TCCCATTTGTGGAATGAGACATCGTCTGTGGAACTTTAT
gi|13 : ttaagACATGTGGAATGAGACAATATCTGTCAAACTTTATGC
gi|2 : atccattatgctatttctgtatatactgatattttagtacaatatatatacactgtgattcctctattatgcattttctgggagccaaagattcggaccgcaacataaatggagctttataaacatcttggctatgaaaagtccaATGTGGAATGAAACATAATCTGTGGGATTTTGTGCAAAC
gi|24 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctatggaaagccctaaTGAGACATCATCTGTGGAAATTAATACAAATGTCTTattgtatctattctgttattatagttttctgttgcataatttggaaaaaaatacctttattgtgaaacaaaaacattctatgtcggccatttttacaaactttgaatcacatgttctacacatgattctataaaagtcatccagtgagaagtttatatatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|15 : ctatggataatcccctttgtgAGACATCTCTTGTGGAATAATATACAAATATCTTT-CTTTCTGTTTCTTTC-----AA--CATC--T--------------CATGTACTGATTACTTA--C-ATT----T-T-----T-T-CTA------TTCTGTTAT-T-----ATA-TTTT-CTA-TTGCAT-ACAT--GTACATGTATATGGATAATTTGGAC-AA
gi|19 : gagatcttatgaaaatctcattaaaacaaagctTGTGGTCTGTTAGGCAAACATTTTT-CTTTCCGTTTCTTTC-----GA--TATT--TTGTG-TA-GCTTATCATGAAt
gi|3 : atatagtcaaaaccgcattatcaatatcatagctgtggaaaattccacaCTTT-CTTTTTGTTTCTTTA-----AA--TAT----------A-A-----CACGCAATAAACACT-A-AC-TTTT--TC-T-----T-T-CTACCGGTATTCTAGTAT-TACATGTTGTTTTT-TT---TG--T-ACAT--AT-----TG-----ATAATTTGGATAAAAAATAC-CTTTATTTT--T--------G----AAAT--A----TTGACATTCGG-CTTCCACCA-TCTC----TACACAGACTTAGCA---------T-GACATGTG--ATT-------AACTTT-T----TGGGAAGTCTATA
gi|1 : ataatctatttgttatagtcatcgtctaacattttcaatcaatataaaacataaaatgcattgcgaccccaatataatgcagttcccaggagccaaattgcaatatagacagaaccgctttataaacattgcagctatgaaaaatggagcaagatatcttgttgtTTT-TTTTCC---TGTTTC-----AT--TATT--TAGTG-TA-ATTTTTCATGAAACAATTACTTA------CA--TT-G-----T-T-CTA------TTCTGTTAT-T-----ATATTTTT-CTG-TTG--T-ATAA--AC-----CC-----ATAATTTGGAC-AAAAAAAA-CATTG-TTT--T--------GAACAAAAA--A----A--AAACTCTG-TGTCTGCCT-TCTG----TATGCG--CTTTGCATCACGTGATC-GACACGTG--TTTCTATATAAGC--CACCTAGTGGGAAGTCTATAt
gi|9 : cataattatatgtaatatatacggcagtcctgttataatgcagtttgtgggagccaaagagtcggttataaatattgaggctatgaaaggtgcaaTTTTTTCTCCAAAA--TACTAGTAGAG-TGCACTGATCATGAAATGATTACTTG------TAAGTT-T-----T-T-ATA------TTCTGTTAA-T-----ATATTTTTTCTG-TCC--G-ACAT--AT-----CA-----CTAATTTGGAC-AAAAATAG-CTTTG-TTT--TTTTTTTAAA----AAAA--A----G--ACATTCTG-TGTTGGCCA-TCTT----TACATGCAAATTGTCTCGCAGGATG-G----ATG--ATCC------ATT--T-C----TGAGAAGTCTATttagccttccctccattaacactactatatctggtgtaaagtgtaaacaatattggctttgcaaaaaacttcgcaataaaagacagatcaatgtctgcttaaatcatttaaaagtgatgttctgtataac
gi|14 : tgttTCTTTG-----AA--TCTA--TAGCA-CA-ACTTATTGTGAAATGATTACTTA------CA--TT-T-----T-T----------TTCTATTAT---------ATTTTT-CTA-TTG--T-A-------------G-----ACAATTTGGAC-AAAAATAC-CTTTG-TTT-----------G----AAAT--AAA--C--ACACTCTG-TGTTGGCCA-CTTT----TACTCTTACTTTGTATAAAGTATTT-GAGACTTG--ATTC------GAG--T-C----TGAGTAGgtatagccccaatttgcaataccatatccggttaaa
gi|8 : TCTTTC-----AA--TAAA--TAGTG-TA-ACTTATCGTAAAATAATTACTTG------TA--TTGTTAAAAT-T-CTA------TTCT-TT-T-T-----TTATTTTT-TTA-TT---C-ATATTCAC-----TG-----TTAATTTGG-T-AAAA------------------------------AAAT--A---------AATCTGTTG---GCCA-TCTT----TACACG--CTCTGGATTATGTGATTCTACACAAGCCACCT------AGC----------GAGAAGTCTATA
gi|21 : caAAATGATTGCTTA------CA--TTGT-----T-T-CTA------TTCTGTTAT-T-----ATATTTTT-CTA-TTG--T-ATAT--AT-----CA-----ATAATGTGAAC-AAAAAtcaggggtttaatatcacattggcttcgcaaaaaatgtgacgatgtgtaataaaaaacactattgtttgtcgatgtaaatcattta
gi|6 : CTGTTTA-AT--TTA--TT-T-----T-T-ATT------TTTTCTTACAT-----GTATGTAT-ATAATTA--TTATAT--AT-----CA-----ATAATTTGGAC-AAAAATAC-AATTG-TTT--T--------G----AG------------ACATTCTG-TGTCGGCCA-TATT----TAT-TGT-TTTTGTATCACATGATT-AACACATG--ACTaa
gi|2 : tattttgtttttatt-T-CTA------TTCTGTTAT-T-----ATAGTTTT-CTG-TTG--C---------------------ATAATTTGGAA-AAAAATAC-CTTTA-TTG--T--------G----AAACAAA----A--ACATTCTA-TGTCGGCCA-TTTT----TA--CAAACTTTGAATCACATGTTC-TACACATG--ATTCTATAAAAGTCAT-CCAG-TGAGAAGTTTATAgtatagatatataagctagatatataggggtattggtactcctgcaaatttgttaatactttatattgaaatcaataaagtgaaatattctattgccaaaaattcttatctagagtgctgaa
gi|25 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctatggaaagccctaaatgtggaatgaaacataatctgtgggattttgtgcaaacattgtaTGGGG-AAAAATCCACTTTG-TTT--T--------G----AAAC--AAA--T--ACATTCTG-CGTTGGCCA-TCTT----TACtatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TCATCCAATACAGGTAATTTTTTATGAAAATATGTAGGATGTTAACATAATCAAGGCATGATAGAAGTTGACAAACAAATAACATGATATGAGACGCTAAAGTTTATTGATTGTATAATTTGTATGTGTGGTATAAACATGCATGTATACTATATAAATATAGGTGGCCAAATTTTAACAATTTACA
Unaligned ( gi|20 ): ATACACTGCAGTCCAGATATTACGTGGTTCCCAGGAGCCAAAGAATTGGACCGTTGGTATAAATGGAACCACGTTATATCAG
Unaligned ( gi|22 ): ATATTAAATACACTGCAGTGGATATAACATGATTCACAGGAGTCAAAGTATCAGACCGTGATATAGACAGAACC
Unaligned ( gi|23 ): ATGGAACTACTTTATAAGCAGCGCGGCCATGGAAAGTCCCACATGCCGAATGAAAATCATCCGTT
Unaligned ( gi|26 ): TCTATATAAGCCACCTAGTGACACGTCTATATATAGGTTCCCCCCA
Alignments
lowQualScore : 22 11111111111111111111111111111 111111111111 22222222222222222 111111111111 11111111111111111 1111 33333333 555555555555555555
lowQualScore : 99 1 1 3 3 1 77777 33 88888888 2 2 6666 66 88888888888888888888888888888 33 0 111111111111 3 00000000000000000 555555555555 3 0 44 2 888888 2 3 3 99999999999999999 2 666 2222 33333333 3 1 2 4 666 777777777777777777
lowQualScore : .. . . . . . ..... .. ........ . . .... .. ............................. .. . ............ . ................. ............ . . .. . ...... . . . ................. . ... .... ........ . . . . ... ..................
lowQualScore : 99 7 1 1 3 4 11111 99 88888888 9 2 1111 88 11111111111111111111111111111 77 9 666666666666 1 66666666666666666 888888888888 1 1 22 5 888888 9 6 6 99999999999999999 3 000 7777 99999999 9 6 1 0 999 666666666666666666
consensus : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--AAA--AA----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
Reference ( family-553 ) : NTGGAAAGTCCCACATGT-TGGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--ANA--NA----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
gi|1 : TGCAA-----TT-TTT-TTCC---TGTTTC-----AT--TATTTAGT---GTA-ATTTTTCATGAAACAATTACTTA----CA--TT----G-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------GTTG------------T-ATAA--ACCCATA------ATTTGGAC-AAAAAAAA-CATTG-TTTT--------GAACAAA--AAA--AA----AACTCTGTGTCTGCCTTCTGTAT--GC-G--CTTTGCATCACGTGA-TCGACAC--GTGTTTCTATATAAGC--CACCTAGTGGGAAGTCTATA
gi|10 : cataattatatgtaatatatacggcagtcctgttataatgcagtttgtgggagccaaagagtcggttataaatattgaggctatgaaaggAAAATCCCCCATGT--GGAGAGAGACATCATATGTGAAAACTTATGCAA-CATCTT-TAT-TTCTGTT-CTTTC-----AA--T-TACA-----------TTGTCATGAAACGACCACTTA----CA--TTCTTAT-----T-T-TGTAT----------ATTCTAGT--ATTATA-------T----TTTT-TT----------------ATTG------------T-ATGG--ATCAATACAGTTGATTTGG-C-GAAAttagccttccctccattaacactactatatctggtgtaaagtgtaaacaatattggctttgcaaaaaacttcgcaataaaagacagatcaatgtctgcttaaatcatttaaaagtgatgttctgtataac
gi|11 : tagtcgcagctatcaTGGAAAATCCCACATGT--GGAGTGAGACATCATCTGCGGAACTT-ATGCATATGTCTT-TAT-CTCCGTTTCATTC-----AA--TATA---T---GTA-ACTTATCGTGtattgccactctatttttatgtgctctttgcatcaaatcccac
gi|13 : aaatacattgcagttccaatataacgtggttcctgggagccaaagaactgaaccgactccaatcgagatatagacggaatcgcattatacatattgcgactaTGAAAAGTCCAACATGT--GGAATGAGACAATATCTGTCAAACTTTATGC
gi|14 : atccattatgctatttctgtatatactgatattttagtacaatatatatacactgtgattcctctattatgcattttctgggagccaaagattcggaccgcaacataaatggagctttataaacatcttggctaTCTTTG-----AA--TCTATAGC---ACA-ACTTATTGTGAAATGATTACTTA----CA--TT----T-----T-T-----------------TTC---T--ATTATA-------T----TTTT-CT----------------ATTG------------T-A--------GACA------ATTTGGAC-AAAAATAC-CTTTG--TTT--------G----AAATAAA--CA----CACTCTGTGTTGGCCACTTTTAC--TCTT-ACTTTGTATAAAGTAT-TTGAGAC--TTGATTC------GAG--T-C----TGAGTAG
gi|15 : AGACATCTCTTGTGGAATAATATACAAATATCTT-TCT-TTCTGTTTCTTTC-----AA--CATCTCAT---GT--AC-----------TGATTACTTA----CAT-TT----T-----T-T-C---T----------ATTCTGTT--ATTATA------------TTTT-CT----------------ATTGCATACATGTACAT-GTAT--ATGGATA------ATTTGGAC-AA
gi|16 : gagatcttatgaaaatctcattaaaacaaagctTGGAAAATCCCACCTGT--GGAGTGAGACATCATCTGTGGAACTTTt
gi|17 : ctatgtacactgcattctcaatataatgcagtccctggaagtaaaaaatgttgaccatgatatatagacggaactgtgtttaaatattgcggctaTGGAAAATCTCACAT-T-TGGAGCGCGACATCATCTGTGGTATTTCATTTATACGACTT-TTT-----GTTTCCT-------AA--TAT--AAT---GTA-ATTGATCGTGAAATGATTATTTA----CA--TT----TA----T-C-C---T----------ATTCTGTT--TTTATA-------T----TT
gi|18 : gctgcgaAAGTCCCACGTGT--GGAATGAGA-ATTATTTGTGGAACTTTATGCAAAAATTTT-GCT-TTCTCTTTCTTTC-----AA--TTTGTA-----CCA-ACTTATCTTGAAATGATTACTTA----CA--TT----T-------------T----------ATTCTGTA--ATT
gi|19 : TGGAAAATTCCACATGT--GG------------TCTGT-------TAGGCAAACATTTT-TCT-TTCCGTTTCTTTC-----GA--TATTTTGT---GTA-GCTTATCATGAAtt
gi|2 : atatagtcaaaaccgcattatcaatatcatagctgTGGAAAGCCCTAAATGT--GGAATGAAACATAATCTGTGGGATTTTGTGCAAACATTGTATCTATTCTGTT
gi|2 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctaA----CA--TT----G-----TAT-C---T----------ATTCTGTT--ATTATA-------G----TTTT-CT----------------GTTG------------C-----------ATA------ATTTGGAA-AAAAATAC-CTTTA-TTGT--------G----AAACAAA--AA----CATTCTATGTCGGCCATTTTTAC--A--A-ACTTTGAATCACATGT-TCTACAC--ATGATTCTATAAAAGTCAT-CCAG-TGAGAAGTTTATAattatagttttctgttgcataatttggaaaaaaatacctttattgtgaaacaaaaacattctatgtcggccatttttacaaactttgaatcacatgttctacacatgattctataaaagtcatccagtgagaagtttatatatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|21 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctatggaaagccctaaatgtggaatgaaacataatctgtgggattttgtgcaaAAATGATTGCTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCAATA------ATGTGAAC-AAAAAtatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|23 : TGGAAAGTCCCACATGC-C-GAATGAAA-ATCATCCGTaa
gi|24 : atggaactactttataagcagcgcggccaTGGATAATCCCCTTTGT-----GTGAGACATCATCTGTGGAAATTAATACAAATGTCTT-t
gi|25 : ctaTGGGG-AAAAATCCACTTTG-TTTT--------G----AA--ACA--AATA--CATTCTGCGTTGGCCATCTTTAC--
gi|27 : AAGTCCCATTTGT--GGAATGAGACATCGTCTGTGGAACTTTAT
gi|3 : ttGTCTT-TCT-TTTTGTTTCTTTA-----AA--TAT----------A-AC-----ACGCAATAAACACTAA----C---TT----T-----T-T-C---TTTCTACCGGTATTCTAGT--ATTACA-------TGTTGTTTT-TT-----------------TTG------------T-ACAT--ATTGATA------ATTTGGATAAAAAATAC-CTTTATTTTT--------G----AA--ATATTGA----CATTCGGCTTCCACCATCTCTAC--ACAG-ACTTAGCAT----------GACAT--GTGATT-------AACTTT-T----TGGGAAGTCTATA
gi|4 : ataatctatttgttatagtcatcgtctaacattttcaatcaatataaaacataaaatgcattgcgaccccaatataatgcagttcccaggagccaaattgcaatatagacagaaccgctttataaacattgcagctatgaaaaatggagcaagatatcttgttTGGAAAGTCCCACATAT--GCAAAGAGA----GT-TGTGGAACTTTATGTGAACGTCTT-TCT-TTCTGTTTCTTTC-----AAAATATATAGT---GTA-ACTTATCTTGGAATGAGAACTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------TTCA------------T-ATAT--ACCAATA------ATATGGAC-AAAAATAA-CTC------------------------AAA--AA----TATTCCATGTCAGCCATCTTTAT--GT-G--CTATGTATCACATAA-TCG-CAC--ATt
gi|5 : ataaaaacactgcggtagtgatataacatggttcccaggagtccgtgtcagattgcgatatagactgaaccacgttgttataaatgttgcagctaAAAGTATCACAT---TAGAATGAGACCTAATCCATGCAATGTTGTGTAAACATCTT-TCT-TTCTGTTTCCTAC-----AA--TATATAGT---GTA-ACTTATTGTGAAATGATTACATA----TA--TT----T-----T-TTC---T----------GTTATATA--ATTGTA-------T----TTCT-CT----------------ATTG------------T-TCAT--ACCAATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--AAA--AAACAATATTCTGTGTTAGCCTTCTTTAC-----------------ACATGA-TCTACAC--GTGATTC------TG---T-C----TAGTAAGCCtct
gi|6 : ataa----T-----T-T-T---T----------ATTCTGTTTAATT-TATTTTTATT----TTTT-CTTACATGTATGTATATAATTA------------TTATAT--ATCAATA------ATTTGGAC-AAAAATAC-AATTG-TTTT--------G----------A--GA----CATTCTGTGTCGGCCATATTTAT---T-G-TTTTTGTATCACATGA-TTAACAC--ATGACTacctggcgagatgtttatattaaggtcttgatttgcatttggcatactgcatatccggtaaa
gi|7 : tattttgTGGTAAATCTCACATATATGGAATGAGACATCATCTGTGGAATTTTATGCGAACGACTT-TCT-TTCCGATTCTTTC-----AA--TATTTAGT---GTA-ATTTATCATGAAATGACCGCTTAACCTTA--TT----T-----T-T-C---T----------ATTCTGTT--ATTTTA-------T----TTTT-CT----------------ATTG------------T-ATAT--GTTAATA------ATTTGGAC-AAAAACAC-CTTCG-TTTT--------G----AA--ATA--TA----CATTCTGTGTCTGCCATCTATAC--GC-GCACTTTGCATCACATCA-TTGACAC--ATGATTC------AGC--T-C----TGAGAAGTTTATAgtatagatatataagctagatatataggggtattggtactcctgcaaatttgttaatactttatattgaaatcaataaagtgaaatattctattgccaaaaattcttatctagagtgctgaa
gi|8 : gTCTTTC-----AA--TAAATAGT---GTA-ACTTATCGTAAAATAATTACTTG----TA--TTG---TTAAAAT-T-C---T----------ATTCTTTT---TT-TA-------T----TTTT-TT----------------ATT-------------C-ATATTCACTGTTA------ATTTGG-T-AAAA----------------------------AA--ATA--AA-------TC--TGTTGGCCATCTTTAC--AC-G--CTCTGGATTATGTGATTCTACACAAGCCACCT------AGC----------GAGAAGTCTATA
gi|9 : caTTTTTTTCTCCAAAA--TA-CTAGTAGAGTGCACTGATCATGAAATGATTACTTG----TAAGTT----T-----T-T-A---T----------ATTCTGTT--AATATA-------T----TTTTTCT----------------GTCC------------G-ACAT--ATCACTA------ATTTGGAC-AAAAATAG-CTTTG-TTTTTTTTTTAAA----AA--AAA--GA----CATTCTGTGTTGGCCATCTTTACATGC-A-AA-TTGTCTCGCAGGA-TGGA------TGATCC------ATT--T-C----TGAGAAGTCTATtcaggggtttaatatcacattggcttcgcaaaaaatgtgacgatgtgtaataaaaaacactattgtttgtcgatgtaaatcattta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCCAATACAGGTAATTTTTTATGAAAATATGTAGGATGTTAACATAATCAAGGCATGATAGAAGTTGACAAACAAATAACATGATATGAGACGCTAAAGTTTATTGATTGTATAATTTGTATGTGTGGTATAAACATGCATGTATACTATATAAATATAGGTGGCCAAATTTTAACAATTTACA
Unaligned ( gi|20 ): ATACACTGCAGTCCAGATATTACGTGGTTCCCAGGAGCCAAAGAATTGGACCGTTGGTATAAATGGAACCACGTTATATCAG
Unaligned ( gi|22 ): ATATTAAATACACTGCAGTGGATATAACATGATTCACAGGAGTCAAAGTATCAGACCGTGATATAGACAGAACC
Unaligned ( gi|26 ): TCTATATAAGCCACCTAGTGACACGTCTATATATAGGTTCCCCCCA
Alignments
lowQualScore : 11111111111111111111111111111 111111111111 22222222222222222 111111111111 111111111111111111111111111111 33333333 555555555555555555
lowQualScore : 33 1 11 3 3 1 77777 33 55555555 2 2 6666 66 88888888888888888888888888888 33 0 111111111111 3 00000000000000000 555555555555 3 444 2 888888 2 3 3 999999999999999999999999999999 33333333 3 1 2 4 666 777777777777777777
lowQualScore : .. . .. . . . ..... .. ........ . . .... .. ............................. .. . ............ . ................. ............ . ... . ...... . . . .............................. ........ . . . . ... ..................
lowQualScore : 99 7 99 1 3 4 11111 99 33333333 9 2 1111 88 11111111111111111111111111111 77 9 666666666666 1 66666666666666666 888888888888 1 777 5 888888 9 6 6 555555555555555555555555555555 99999999 9 6 1 0 999 666666666666666666
consensus : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-A----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
Reference ( family-553 ) : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-A----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
gi|1 : TGCAA-----TT-TTT-TTCC---TGTTTC-----AT--TATTTAGT---GTA-ATTTTTCATGAAACAATTACTTA----CA--TT----G-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------GTTG------------T-ATAA--ACCCATA------ATTTGGAC-AAAAAAAA-CATTG-TTTT--------GAACAAA--A-AA--A-A----AACTCTGTGTCTGCCTTCTGTAT--GC-G--CTTTGCATCACGTGA-TCGACAC--GTGTTTCTATATAAGC--CACCTAGTGGGAAGTCTATA
gi|10 : cataattatatgtaatatatacggcagtcctgttataatgcagtttgtgggagccaaagagtcggttataaatattgaggctatgaaaggAAAATCCCCCATGT--GGAGAGAGACATCATATGTGAAAACTTATGC-AACATCTT-TAT-TTCTG-TTCTTTC-----AA--T-TACA-----------TTGTCATGAAACGACCACTTA----CA--TTCTTAT-----T-T-TGTAT----------ATTCTAGT--ATTATA-------T----TTTT-TT----------------ATTG------------T-ATGG--ATCAATACAGTTGATTTGG-C-GAAAttagccttccctccattaacactactatatctggtgtaaagtgtaaacaatattggctttgcaaaaaacttcgcaataaaagacagatcaatgtctgcttaaatcatttaaaagtgatgttctgtataac
gi|11 : tagtcgcagctatcaTGGAAAATCCCACATGT--GGAGTGAGACATCATCTGCGGAAC-TTATGCATATGTCTT-TAT-CTCCGTTTCATTC-----AA--TATA---T---GTA-ACTTATCGTGtattgccactctatttttatgtgctctttgcatcaaatcccac
gi|13 : aaatacattgcagttccaatataacgtggttcctgggagccaaagaactgaaccgactccaatcgagatatagacggaatcgcattatacatattgcgactaTGAAAAGTCCAACATGT--GGAATGAGACAATATCTGTCAAACTTTATGC
gi|14 : atccattatgctatttctgtatatactgatattttagtacaatatatatacactgtgattcctctattatgcattttctgggagccaaagattcggaccgcaacataaatggagctttataaacatcttggctaTCTTTG-----AA--TCTATAGC---ACA-ACTTATTGTGAAATGATTACTTA----CA--TT----T-----T-T-----------------TTC---T--ATTATA-------T----TTTT-CT----------------ATTG------------T-A--------GACA------ATTTGGAC-AAAAATAC-CTTTG--TTT--------G----AA--ATAA--ACA----CACTCTGTGTTGGCCACTTTTAC--TCTT-ACTTTGTATAAAGTAT-TTGAGAC--TTGATTC------GAG--T-C----TGAGTAG
gi|15 : AGACATCTCTTGTGGAATAATATACAAATATCTT-TCT-TTCTGTTTCTTTC-----AA--CATCTCAT---GT--AC-----------TGATTACTTA----CAT-TT----T-----T-T-C---T----------ATTCTGTT--ATTATA------------TTTT-CT----------------ATTGCATACATGTACAT-GTAT--ATGGATA------ATTTGGAC-AA
gi|16 : gagatcttatgaaaatctcattaaaacaaagctTGGAAAATCCCACCTGT--GGAGTGAGACATCATCTGTGGAACTTTt
gi|17 : ctatgtacactgcattctcaatataatgcagtccctggaagtaaaaaatgttgaccatgatatatagacggaactgtgtttaaatattgcggctaTGGAAAATCTCACATTT--GGAGCGCGACATCATCTGTGGTATTTCATTTATACGACTT-TTT-----GTTTCCT-------AA--TA--TAAT---GTA-ATTGATCGTGAAATGATTATTTA----CA--TT----TA----T-C-C---T----------ATTCTGTT--TTTATA-------T----TT
gi|18 : gctgcgaAAGTCCCACGTGT--GGAATGAGA-ATTATTTGTGGAACTTTATGCAAAAATTTT-GCT-TTCTCTTTCTTTC-----AA--TTTGTA-----CCA-ACTTATCTTGAAATGATTACTTA----CA--TT----T-------------T----------ATTCTGTA--ATT
gi|19 : TGGAAAATTCCACATGT--GG------------TCTGT-------TAGGCAAACATTTT-TCT-TTCCGTTTCTTTC-----GA--TATTTTGT---GTA-GCTTATCATGAAtt
gi|2 : atatagtcaaaaccgcattatcaatatcatagctgTGGAAAGCCCTAAATGT--GGAATGAAACATAATCTGTGGGATTTTGTGCAAACATTGTATCTATTCTGTT
gi|2 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctaA----CA--TT----G-----TAT-C---T----------ATTCTGTT--ATTATA-------G----TTTT-CT----------------GTTG------------C-ATA----------------ATTTGGAA-AAAAATAC-CTTTA-TTGT--------G----AAACA-AA--A-A----CATTCTATGTCGGCCATTTTTAC--A--A-ACTTTGAATCACATGT-TCTACAC--ATGATTCTATAAAAGTCAT-CCAG-TGAGAAGTTTATAattatagttttctgttgcataatttggaaaaaaatacctttattgtgaaacaaaaacattctatgtcggccatttttacaaactttgaatcacatgttctacacatgattctataaaagtcatccagtgagaagtttatatatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|21 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctatggaaagccctaaatgtggaatgaaacataatctgtgggattttgtgcaaAAATGATTGCTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCAATA------ATGTGAAC-AAAAAtatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|23 : TGGAAAGTCCCACATGC--CGAATGAAA-ATCATCCGTaa
gi|24 : atggaactactttataagcagcgcggccaTGGATAATCCCCTTTGT--G---TGAGACATCATCTGTGGAAATTAATACAAATGTCTT-t
gi|25 : ctaTGGGG-AAAAATCCACTTTG-TTTT--------G----AA--ACAA--ATA----CATTCTGCGTTGGCCATCTTTAC--
gi|27 : AAGTCCCATTTGT--GGAATGAGACATCGTCTGTGGAACTTTAT
gi|3 : ttGTCTT-TCT-TTTTGTTTCTTTA-----AA--TAT----------A-AC-----ACGCAATAAACACTAA----C---TT----T-----T-T-C---TTTCTACCGGTATTCTAGT--ATTACA-------TGTTGTTTT-TT-----------------TTG------------T-ACAT--ATTGATA------ATTTGGATAAAAAATAC-CTTTATTTTT--------G----AA--A-TATTG-A----CATTCGGCTTCCACCATCTCTAC--ACAG-ACTTAGCAT----------GACAT--GTGATT-------AACTTT-T----TGGGAAGTCTATA
gi|4 : ataatctatttgttatagtcatcgtctaacattttcaatcaatataaaacataaaatgcattgcgaccccaatataatgcagttcccaggagccaaattgcaatatagacagaaccgctttataaacattgcagctatgaaaaatggagcaagatatcttgttTGGAAAGTCCCACATAT--GCAAAGAGA----GT-TGTGGAACTTTATGTGAACGTCTT-TCT-TTCTGTTTCTTTC-----AAAATATATAGT---GTA-ACTTATCTTGGAATGAGAACTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------TTCA------------T-ATAT--ACCAATA------ATATGGAC-AAAAATAA-CTC------------------------A-AA--A-A----TATTCCATGTCAGCCATCTTTAT--GT-G--CTATGTATCACATAA-TCG-CAC--ATt
gi|5 : ataaaaacactgcggtagtgatataacatggttcccaggagtccgtgtcagattgcgatatagactgaaccacgttgttataaatgttgcagctaAAAGTATCACAT-T--AGAATGAGACCTAATCCATGCAATGTTGTGTAAACATCTT-TCT-TTCTGTTTCCTAC-----AA--TATATAGT---GTA-ACTTATTGTGAAATGATTACATA----TA--TT----T-----T-TTC---T----------GTTATATA--ATTGTA-------T----TTCT-CT----------------ATTG------------T-TCAT--ACCAATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-AACAATATTCTGTGTTAGCCTTCTTTAC-----------------ACATGA-TCTACAC--GTGATTC------TG---T-C----TAGTAAGCCtct
gi|6 : ataa----T-----T-T-T---T----------ATTCTGTTTAATT-TATTTTTATT----TTTT-CTTACATGTATGTATATAATTA------------TTATAT--ATCAATA------ATTTGGAC-AAAAATAC-AATTG-TTTT--------G-----------A--G-A----CATTCTGTGTCGGCCATATTTAT---T-G-TTTTTGTATCACATGA-TTAACAC--ATGACTacctggcgagatgtttatattaaggtcttgatttgcatttggcatactgcatatccggtaaa
gi|7 : tattttgTGGTAAATCTCACATATATGGAATGAGACATCATCTGTGGAATTTTATGCGAACGACTT-TCT-TTCCGATTCTTTC-----AA--TATTTAGT---GTA-ATTTATCATGAAATGACCGCTTAACCTTA--TT----T-----T-T-C---T----------ATTCTGTT--ATTTTA-------T----TTTT-CT----------------ATTG------------T-ATAT--GTTAATA------ATTTGGAC-AAAAACAC-CTTCG-TTTT--------G----AA--A-TA--T-A----CATTCTGTGTCTGCCATCTATAC--GC-GCACTTTGCATCACATCA-TTGACAC--ATGATTC------AGC--T-C----TGAGAAGTTTATAgtatagatatataagctagatatataggggtattggtactcctgcaaatttgttaatactttatattgaaatcaataaagtgaaatattctattgccaaaaattcttatctagagtgctgaa
gi|8 : gTCTTTC-----AA--TAAATAGT---GTA-ACTTATCGTAAAATAATTACTTG----TA--TTG---TTAAAAT-T-C---T----------ATTCTTTT---TT-TA-------T----TTTT-TT----------------ATT-------------C-ATATTCACTGTTA------ATTTGG-T-AAAAA---------------------------AA--T-AA--A---------TC--TGTTGGCCATCTTTAC--AC-G--CTCTGGATTATGTGATTCTACACAAGCCACCT------AGC----------GAGAAGTCTATA
gi|9 : caTTTTTTTCTCCAAAA--TA-CTAGTAGAGTGCACTGATCATGAAATGATTACTTG----TAAGTT----T-----T-T-A---T----------ATTCTGTT--AATATA-------T----TTTTTCT----------------GTCC------------G-ACAT--ATCACTA------ATTTGGAC-AAAAATAG-CTTTG-TTTTTTTTTTAAA----AA--A-AA--G-A----CATTCTGTGTTGGCCATCTTTACATGC-A-AA-TTGTCTCGCAGGA-TGGA------TGATCC------ATT--T-C----TGAGAAGTCTATtcaggggtttaatatcacattggcttcgcaaaaaatgtgacgatgtgtaataaaaaacactattgtttgtcgatgtaaatcattta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCCAATACAGGTAATTTTTTATGAAAATATGTAGGATGTTAACATAATCAAGGCATGATAGAAGTTGACAAACAAATAACATGATATGAGACGCTAAAGTTTATTGATTGTATAATTTGTATGTGTGGTATAAACATGCATGTATACTATATAAATATAGGTGGCCAAATTTTAACAATTTACA
Unaligned ( gi|20 ): ATACACTGCAGTCCAGATATTACGTGGTTCCCAGGAGCCAAAGAATTGGACCGTTGGTATAAATGGAACCACGTTATATCAG
Unaligned ( gi|22 ): ATATTAAATACACTGCAGTGGATATAACATGATTCACAGGAGTCAAAGTATCAGACCGTGATATAGACAGAACC
Unaligned ( gi|26 ): TCTATATAAGCCACCTAGTGACACGTCTATATATAGGTTCCCCCCA
Alignments
lowQualScore : 11111111111111111111111111111 111111111111 22222222222222222 111111111111 111111111111111111111111111111 33333333 555555555555555555
lowQualScore : 33 1 11 3 3 1 77777 33 55555555 2 2 6666 66 88888888888888888888888888888 33 0 111111111111 3 00000000000000000 555555555555 3 444 2 888888 2 3 3 999999999999999999999999999999 33333333 3 1 2 4 666 777777777777777777
lowQualScore : .. . .. . . . ..... .. ........ . . .... .. ............................. .. . ............ . ................. ............ . ... . ...... . . . .............................. ........ . . . . ... ..................
lowQualScore : 99 7 99 1 3 4 11111 99 33333333 9 2 1111 88 11111111111111111111111111111 77 9 666666666666 1 66666666666666666 888888888888 1 777 5 888888 9 6 6 555555555555555555555555555555 99999999 9 6 1 0 999 666666666666666666
consensus : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-A----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
Reference ( family-553 ) : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-A----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
gi|1 : TGCAA-----TT-TTT-TTCC---TGTTTC-----AT--TATTTAGT---GTA-ATTTTTCATGAAACAATTACTTA----CA--TT----G-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------GTTG------------T-ATAA--ACCCATA------ATTTGGAC-AAAAAAAA-CATTG-TTTT--------GAACAAA--A-AA--A-A----AACTCTGTGTCTGCCTTCTGTAT--GC-G--CTTTGCATCACGTGA-TCGACAC--GTGTTTCTATATAAGC--CACCTAGTGGGAAGTCTATA
gi|10 : cataattatatgtaatatatacggcagtcctgttataatgcagtttgtgggagccaaagagtcggttataaatattgaggctatgaaaggAAAATCCCCCATGT--GGAGAGAGACATCATATGTGAAAACTTATGC-AACATCTT-TAT-TTCTG-TTCTTTC-----AA--T-TACA-----------TTGTCATGAAACGACCACTTA----CA--TTCTTAT-----T-T-TGTAT----------ATTCTAGT--ATTATA-------T----TTTT-TT----------------ATTG------------T-ATGG--ATCAATACAGTTGATTTGG-C-GAAAttagccttccctccattaacactactatatctggtgtaaagtgtaaacaatattggctttgcaaaaaacttcgcaataaaagacagatcaatgtctgcttaaatcatttaaaagtgatgttctgtataac
gi|11 : tagtcgcagctatcaTGGAAAATCCCACATGT--GGAGTGAGACATCATCTGCGGAAC-TTATGCATATGTCTT-TAT-CTCCGTTTCATTC-----AA--TATA---T---GTA-ACTTATCGTGtattgccactctatttttatgtgctctttgcatcaaatcccac
gi|13 : aaatacattgcagttccaatataacgtggttcctgggagccaaagaactgaaccgactccaatcgagatatagacggaatcgcattatacatattgcgactaTGAAAAGTCCAACATGT--GGAATGAGACAATATCTGTCAAACTTTATGC
gi|14 : atccattatgctatttctgtatatactgatattttagtacaatatatatacactgtgattcctctattatgcattttctgggagccaaagattcggaccgcaacataaatggagctttataaacatcttggctaTCTTTG-----AA--TCTATAGC---ACA-ACTTATTGTGAAATGATTACTTA----CA--TT----T-----T-T-----------------TTC---T--ATTATA-------T----TTTT-CT----------------ATTG------------T-A--------GACA------ATTTGGAC-AAAAATAC-CTTTG--TTT--------G----AA--ATAA--ACA----CACTCTGTGTTGGCCACTTTTAC--TCTT-ACTTTGTATAAAGTAT-TTGAGAC--TTGATTC------GAG--T-C----TGAGTAG
gi|15 : AGACATCTCTTGTGGAATAATATACAAATATCTT-TCT-TTCTGTTTCTTTC-----AA--CATCTCAT---GT--AC-----------TGATTACTTA----CAT-TT----T-----T-T-C---T----------ATTCTGTT--ATTATA------------TTTT-CT----------------ATTGCATACATGTACAT-GTAT--ATGGATA------ATTTGGAC-AA
gi|16 : gagatcttatgaaaatctcattaaaacaaagctTGGAAAATCCCACCTGT--GGAGTGAGACATCATCTGTGGAACTTTt
gi|17 : ctatgtacactgcattctcaatataatgcagtccctggaagtaaaaaatgttgaccatgatatatagacggaactgtgtttaaatattgcggctaTGGAAAATCTCACATTT--GGAGCGCGACATCATCTGTGGTATTTCATTTATACGACTT-TTT-----GTTTCCT-------AA--TA--TAAT---GTA-ATTGATCGTGAAATGATTATTTA----CA--TT----TA----T-C-C---T----------ATTCTGTT--TTTATA-------T----TT
gi|18 : gctgcgaAAGTCCCACGTGT--GGAATGAGA-ATTATTTGTGGAACTTTATGCAAAAATTTT-GCT-TTCTCTTTCTTTC-----AA--TTTGTA-----CCA-ACTTATCTTGAAATGATTACTTA----CA--TT----T-------------T----------ATTCTGTA--ATT
gi|19 : TGGAAAATTCCACATGT--GG------------TCTGT-------TAGGCAAACATTTT-TCT-TTCCGTTTCTTTC-----GA--TATTTTGT---GTA-GCTTATCATGAAtt
gi|2 : atatagtcaaaaccgcattatcaatatcatagctgTGGAAAGCCCTAAATGT--GGAATGAAACATAATCTGTGGGATTTTGTGCAAACATTGTATCTATTCTGTT
gi|2 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctaA----CA--TT----G-----TAT-C---T----------ATTCTGTT--ATTATA-------G----TTTT-CT----------------GTTG------------C-ATA----------------ATTTGGAA-AAAAATAC-CTTTA-TTGT--------G----AAACA-AA--A-A----CATTCTATGTCGGCCATTTTTAC--A--A-ACTTTGAATCACATGT-TCTACAC--ATGATTCTATAAAAGTCAT-CCAG-TGAGAAGTTTATAattatagttttctgttgcataatttggaaaaaaatacctttattgtgaaacaaaaacattctatgtcggccatttttacaaactttgaatcacatgttctacacatgattctataaaagtcatccagtgagaagtttatatatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|21 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctatggaaagccctaaatgtggaatgaaacataatctgtgggattttgtgcaaAAATGATTGCTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCAATA------ATGTGAAC-AAAAAtatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|23 : TGGAAAGTCCCACATGC--CGAATGAAA-ATCATCCGTaa
gi|24 : atggaactactttataagcagcgcggccaTGGATAATCCCCTTTGT--G---TGAGACATCATCTGTGGAAATTAATACAAATGTCTT-t
gi|25 : ctaTGGGG-AAAAATCCACTTTG-TTTT--------G----AA--ACAA--ATA----CATTCTGCGTTGGCCATCTTTAC--
gi|27 : AAGTCCCATTTGT--GGAATGAGACATCGTCTGTGGAACTTTAT
gi|3 : ttGTCTT-TCT-TTTTGTTTCTTTA-----AA--TAT----------A-AC-----ACGCAATAAACACTAA----C---TT----T-----T-T-C---TTTCTACCGGTATTCTAGT--ATTACA-------TGTTGTTTT-TT-----------------TTG------------T-ACAT--ATTGATA------ATTTGGATAAAAAATAC-CTTTATTTTT--------G----AA--A-TATTG-A----CATTCGGCTTCCACCATCTCTAC--ACAG-ACTTAGCAT----------GACAT--GTGATT-------AACTTT-T----TGGGAAGTCTATA
gi|4 : ataatctatttgttatagtcatcgtctaacattttcaatcaatataaaacataaaatgcattgcgaccccaatataatgcagttcccaggagccaaattgcaatatagacagaaccgctttataaacattgcagctatgaaaaatggagcaagatatcttgttTGGAAAGTCCCACATAT--GCAAAGAGA----GT-TGTGGAACTTTATGTGAACGTCTT-TCT-TTCTGTTTCTTTC-----AAAATATATAGT---GTA-ACTTATCTTGGAATGAGAACTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------TTCA------------T-ATAT--ACCAATA------ATATGGAC-AAAAATAA-CTC------------------------A-AA--A-A----TATTCCATGTCAGCCATCTTTAT--GT-G--CTATGTATCACATAA-TCG-CAC--ATt
gi|5 : ataaaaacactgcggtagtgatataacatggttcccaggagtccgtgtcagattgcgatatagactgaaccacgttgttataaatgttgcagctaAAAGTATCACAT-T--AGAATGAGACCTAATCCATGCAATGTTGTGTAAACATCTT-TCT-TTCTGTTTCCTAC-----AA--TATATAGT---GTA-ACTTATTGTGAAATGATTACATA----TA--TT----T-----T-TTC---T----------GTTATATA--ATTGTA-------T----TTCT-CT----------------ATTG------------T-TCAT--ACCAATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-AACAATATTCTGTGTTAGCCTTCTTTAC-----------------ACATGA-TCTACAC--GTGATTC------TG---T-C----TAGTAAGCCtct
gi|6 : ataa----T-----T-T-T---T----------ATTCTGTTTAATT-TATTTTTATT----TTTT-CTTACATGTATGTATATAATTA------------TTATAT--ATCAATA------ATTTGGAC-AAAAATAC-AATTG-TTTT--------G-----------A--G-A----CATTCTGTGTCGGCCATATTTAT---T-G-TTTTTGTATCACATGA-TTAACAC--ATGACTacctggcgagatgtttatattaaggtcttgatttgcatttggcatactgcatatccggtaaa
gi|7 : tattttgTGGTAAATCTCACATATATGGAATGAGACATCATCTGTGGAATTTTATGCGAACGACTT-TCT-TTCCGATTCTTTC-----AA--TATTTAGT---GTA-ATTTATCATGAAATGACCGCTTAACCTTA--TT----T-----T-T-C---T----------ATTCTGTT--ATTTTA-------T----TTTT-CT----------------ATTG------------T-ATAT--GTTAATA------ATTTGGAC-AAAAACAC-CTTCG-TTTT--------G----AA--A-TA--T-A----CATTCTGTGTCTGCCATCTATAC--GC-GCACTTTGCATCACATCA-TTGACAC--ATGATTC------AGC--T-C----TGAGAAGTTTATAgtatagatatataagctagatatataggggtattggtactcctgcaaatttgttaatactttatattgaaatcaataaagtgaaatattctattgccaaaaattcttatctagagtgctgaa
gi|8 : gTCTTTC-----AA--TAAATAGT---GTA-ACTTATCGTAAAATAATTACTTG----TA--TTG---TTAAAAT-T-C---T----------ATTCTTTT---TT-TA-------T----TTTT-TT----------------ATT-------------C-ATATTCACTGTTA------ATTTGG-T-AAAAA---------------------------AA--T-AA--A---------TC--TGTTGGCCATCTTTAC--AC-G--CTCTGGATTATGTGATTCTACACAAGCCACCT------AGC----------GAGAAGTCTATA
gi|9 : caTTTTTTTCTCCAAAA--TA-CTAGTAGAGTGCACTGATCATGAAATGATTACTTG----TAAGTT----T-----T-T-A---T----------ATTCTGTT--AATATA-------T----TTTTTCT----------------GTCC------------G-ACAT--ATCACTA------ATTTGGAC-AAAAATAG-CTTTG-TTTTTTTTTTAAA----AA--A-AA--G-A----CATTCTGTGTTGGCCATCTTTACATGC-A-AA-TTGTCTCGCAGGA-TGGA------TGATCC------ATT--T-C----TGAGAAGTCTATtcaggggtttaatatcacattggcttcgcaaaaaatgtgacgatgtgtaataaaaaacactattgtttgtcgatgtaaatcattta
blockSeqs : AT C CT A A T TCCAA AA CTAGTAGA C A ACCT AG TTTCTTTCTACCGGT TA TTTTTATT T TACATGTATGTATATAA CATACATGTACA T TTC A CAGTTG A A T TTTTTTAAAAAAAAGA ATGCAA T A G T AAG TATAAAAGTCATCCAG
blockSeqs : . C TA . . C . . ATAGC . G . T CTTATTTTGTAT . TGTTG . A . . G G . . . . GAAAAAAAACAA TCTTA A C A . T AACTTTT
blockSeqs : . C CT . . T . . CTCAT . G . . GTTAAAATTCT . T . A . . T G . . . . GAAATAAACA ACAGA C C A . A GAGTC
blockSeqs : . C TT . . T . . TTTGT . G . . TATCCT . T . A . . T A . . . . GAAACAAAAA GCGCA T C A . G AGCTC
blockSeqs : . C CT . . C . . ATAGT . T . . GTATCT . T . G . . T G . . . . GAAACAAATA AAA T C A . A ATTTC
blockSeqs : . C TT . . T . . ATAGT . A . . GTTTCT . G . A . . T A . . . . GAAATATTGA GTG C T A . G TGTC
blockSeqs : . C AT . . T . . TTAGT . A . . GTTTCT . T . T . . T A . . . . GAAATATA TGT G C G . A AGC
blockSeqs : . C CT . . T . . ATAGT . T . . TTTTCT . T . A . . T A . . . . AATAAA ACG T . A . A
blockSeqs : . C CT . . T . . TAAT . G . . TTTCT . T . A . . T A . . . . AAAAA . . . . . .
blockSeqs : . C TG . . C . . ACA . A . . TTTTT . T . A . . T G . . . . GAGA
blockSeqs : . . TT . . . . . GTA . G . . TTTCT . T . G . . . A . .
blockSeqs : . . C . . . AT . A . . TTTAT . T . . . . . . . .
blockSeqs : . . . . . . . . . . TTT . . .
blockSeqs : . TT .
blockSeqCons : TTTCT************************ GAAATAAAA********************* AGTTC*************
originalCons : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT--------G----AA--A-AA--A-A----CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------AGC--T-C----TGAGAAGTCTATA
finalCons : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TTTTTCT------------------------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTTGAAATAAAA---------------------CATTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTCAGTTC-------------TGAGAAGTCTATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCCAATACAGGTAATTTTTTATGAAAATATGTAGGATGTTAACATAATCAAGGCATGATAGAAGTTGACAAACAAATAACATGATATGAGACGCTAAAGTTTATTGATTGTATAATTTGTATGTGTGGTATAAACATGCATGTATACTATATAAATATAGGTGGCCAAATTTTAACAATTTACA
Unaligned ( gi|20 ): ATACACTGCAGTCCAGATATTACGTGGTTCCCAGGAGCCAAAGAATTGGACCGTTGGTATAAATGGAACCACGTTATATCAG
Unaligned ( gi|22 ): ATATTAAATACACTGCAGTGGATATAACATGATTCACAGGAGTCAAAGTATCAGACCGTGATATAGACAGAACC
Unaligned ( gi|26 ): TCTATATAAGCCACCTAGTGACACGTCTATATATAGGTTCCCCCCA
Alignments
lowQualScore : 11111111111111111111111111111 111111111111 22222222222222222 111111111111 11111111111 1111 33333333 5555555555555555555
lowQualScore : 33 1 11 3 3 1 77777 33 55555555 2 2 6666 66 88888888888888888888888888888 33 0 111111111111 3 00000000000000000 555555555555 3 444 2 888888 2 3 3 44444444444 0000 7 666 33333333 3 1 2 4 666 9999999999999999999
lowQualScore : .. . .. . . . ..... .. ........ . . .... .. ............................. .. . ............ . ................. ............ . ... . ...... . . . ........... .... . ... ........ . . . . ... ...................
lowQualScore : 99 7 99 1 3 4 11111 99 33333333 9 2 1111 88 11111111111111111111111111111 77 9 666666666666 1 66666666666666666 888888888888 1 777 5 888888 9 6 6 22222222222 1111 3 444 99999999 9 6 1 0 999 2222222222222222222
consensus : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT-------G---AAAN-A-AA-ACA---TTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------A-GT--T-C----TGAGAAGTCTATA
Reference ( family-553 ) : NTGGAAAGTCCCACATGT--GGAATGAGACATCATCTGTGGAACTTTATGCAAACGTCTT-TCT-TTCCGTTTCTTTC-----AA--TATNTAGT---GTA-ACTTATCGTGAAATGATTACTTA----CA--TT----T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCGATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT-------G---AAAT-A-AA-ACA---TTCTGTGTCGGCCATCTTTAC--GC-G-ACTTTGCATCACGTGA-TCGACAC--GTGATTC------A-GT--T-C----TGAGAAGTCTATA
gi|1 : TGCAA-----TT-TTT-TTCC---TGTTTC-----AT--TATTTAGT---GTA-ATTTTTCATGAAACAATTACTTA----CA--TT----G-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------GTTG------------T-ATAA--ACCCATA------ATTTGGAC-AAAAAAAA-CATTG-TTTT-------GAACAAAA-A-AA-AAA---CTCTGTGTCTGCCTTCTGTAT--GC-G--CTTTGCATCACGTGA-TCGACAC--GTGTTTCTATATAA-GC--CACCTAGTGGGAAGTCTATA
gi|10 : cataattatatgtaatatatacggcagtcctgttataatgcagtttgtgggagccaaagagtcggttataaatattgaggctatgaaaggAAAATCCCCCATGT--GGAGAGAGACATCATATGTGAAAACTTATGC-AACATCTT-TAT-TTCTG-TTCTTTC-----AA--T-TACA-----------TTGTCATGAAACGACCACTTA----CA--TTCTTAT-----T-T-TGTAT----------ATTCTAGT--ATTATA-------T----TTTT-TT----------------ATTG------------T-ATGG--ATCAATACAGTTGATTTGG-C-GAAAttagccttccctccattaacactactatatctggtgtaaagtgtaaacaatattggctttgcaaaaaacttcgcaataaaagacagatcaatgtctgcttaaatcatttaaaagtgatgttctgtataac
gi|11 : tagtcgcagctatcaTGGAAAATCCCACATGT--GGAGTGAGACATCATCTGCGGAAC-TTATGCATATGTCTT-TAT-CTCCGTTTCATTC-----AA--TATA---T---GTA-ACTTATCGTGtattgccactctatttttatgtgctctttgcatcaaatcccac
gi|13 : aaatacattgcagttccaatataacgtggttcctgggagccaaagaactgaaccgactccaatcgagatatagacggaatcgcattatacatattgcgactaTGAAAAGTCCAACATGT--GGAATGAGACAATATCTGTCAAACTTTATGC
gi|14 : atccattatgctatttctgtatatactgatattttagtacaatatatatacactgtgattcctctattatgcattttctgggagccaaagattcggaccgcaacataaatggagctttataaacatcttggctaTCTTTG-----AA--TCTATAGC---ACA-ACTTATTGTGAAATGATTACTTA----CA--TT----T-----T-T-----------------TTCT-----ATTATA-------T----TTTT-CT----------------ATTG------------T-A--------GACA------ATTTGGAC-AAAAATAC-CTTTG--TTT-------G---AAAT-A-AACACA---CTCTGTGTTGGCCACTTTTAC--TCTT-ACTTTGTATAAAGTAT-TTGAGAC--TTGATTC------G-AG--T-C----TGAGTAG
gi|15 : AGACATCTCTTGTGGAATAATATACAAATATCTT-TCT-TTCTGTTTCTTTC-----AA--CATCTCAT---GT--AC-----------TGATTACTTA----CAT-TT----T-----T-T-C---T----------ATTCTGTT--ATTATA------------TTTT-CT----------------ATTGCATACATGTACAT-GTAT--ATGGATA------ATTTGGAC-AA
gi|16 : gagatcttatgaaaatctcattaaaacaaagctTGGAAAATCCCACCTGT--GGAGTGAGACATCATCTGTGGAACTTTt
gi|17 : ctatgtacactgcattctcaatataatgcagtccctggaagtaaaaaatgttgaccatgatatatagacggaactgtgtttaaatattgcggctaTGGAAAATCTCACATTT--GGAGCGCGACATCATCTGTGGTATTTCATTTATACGACTT-TTT-----GTTTCCT-------AA--TA--TAAT---GTA-ATTGATCGTGAAATGATTATTTA----CA--TT----TA----T-C-C---T----------ATTCTGTT--TTTATA-------T----TT
gi|18 : gctgcgaAAGTCCCACGTGT--GGAATGAGA-ATTATTTGTGGAACTTTATGCAAAAATTTT-GCT-TTCTCTTTCTTTC-----AA--TTTGTA-----CCA-ACTTATCTTGAAATGATTACTTA----CA--TT----T-------------T----------ATTCTGTA--ATT
gi|19 : TGGAAAATTCCACATGT--GG------------TCTGT-------TAGGCAAACATTTT-TCT-TTCCGTTTCTTTC-----GA--TATTTTGT---GTA-GCTTATCATGAAtt
gi|2 : atatagtcaaaaccgcattatcaatatcatagctgTGGAAAGCCCTAAATGT--GGAATGAAACATAATCTGTGGGATTTTGTGCAAACATTGTATCTATTCTGTT
gi|2 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctaA----CA--TT----G-----TAT-C---T----------ATTCTGTT--ATTATA-------G----TTTT-CT----------------GTTG------------C-ATA----------------ATTTGGAA-AAAAATAC-CTTTA-TTGT-------G---AAACAA-AA-ACA---TTCTATGTCGGCCATTTTTAC--A--A-ACTTTGAATCACATGT-TCTACAC--ATGATTCTATAAAA-GTCAT-CCAG-TGAGAAGTTTATAattatagttttctgttgcataatttggaaaaaaatacctttattgtgaaacaaaaacattctatgtcggccatttttacaaactttgaatcacatgttctacacatgattctataaaagtcatccagtgagaagtttatatatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|21 : aatacattttatgcttttttatacaaacagtaattgtcatggtacttttaattctaattgcacatactacactgcggtcctgatataacgctgttccggcactaccgtatagatggaactgagttataaataatgcggctatggaaagccctaaatgtggaatgaaacataatctgtgggattttgtgcaaAAATGATTGCTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------ATTG------------T-ATAT--ATCAATA------ATGTGAAC-AAAAAtatagcctttattgacaataccataccaggctaaagcaaaaaacaattggcttttgcaaag
gi|23 : TGGAAAGTCCCACATGC--CGAATGAAA-ATCATCCGTaa
gi|24 : atggaactactttataagcagcgcggccaTGGATAATCCCCTTTGT--G---TGAGACATCATCTGTGGAAATTAATACAAATGTCTT-t
gi|25 : ctaTGGGG-AAAAATCCACTTTG-TTTT-------G---AAAC-A-AATACA---TTCTGCGTTGGCCATCTTTAC--
gi|27 : AAGTCCCATTTGT--GGAATGAGACATCGTCTGTGGAACTTTAT
gi|3 : ttGTCTT-TCT-TTTTGTTTCTTTA-----AA--TAT----------A-AC-----ACGCAATAAACACTAA----C---TT----T-----T-T-C---TTTCTACCGGTATTCTAGT--ATTACA-------TGTTGTTTT-TT-----------------TTG------------T-ACAT--ATTGATA------ATTTGGATAAAAAATAC-CTTTATTTTT-------G---AAAT-ATTG-ACA---TTCGGCTTCCACCATCTCTAC--ACAG-ACTTAGCAT----------GACAT--GTGATTA------ACTT--T-T----TGGGAAGTCTATA
gi|4 : ataatctatttgttatagtcatcgtctaacattttcaatcaatataaaacataaaatgcattgcgaccccaatataatgcagttcccaggagccaaattgcaatatagacagaaccgctttataaacattgcagctatgaaaaatggagcaagatatcttgttTGGAAAGTCCCACATAT--GCAAAGAGA----GT-TGTGGAACTTTATGTGAACGTCTT-TCT-TTCTGTTTCTTTC-----AAAATATATAGT---GTA-ACTTATCTTGGAATGAGAACTTA----CA--TTG---T-----T-T-C---T----------ATTCTGTT--ATTATA-------T----TTTT-CT----------------TTCA------------T-ATAT--ACCAATA------ATATGGAC-AAAAATAA-CTC------------------A----A-AA-ATA---TTCCATGTCAGCCATCTTTAT--GT-G--CTATGTATCACATAA-TCG-CAC--ATt
gi|5 : ataaaaacactgcggtagtgatataacatggttcccaggagtccgtgtcagattgcgatatagactgaaccacgttgttataaatgttgcagctaAAAGTATCACAT-T--AGAATGAGACCTAATCCATGCAATGTTGTGTAAACATCTT-TCT-TTCTGTTTCCTAC-----AA--TATATAGT---GTA-ACTTATTGTGAAATGATTACATA----TA--TT----T-----T-TTC---T----------GTTATATA--ATTGTA-------T----TTCT-CT----------------ATTG------------T-TCAT--ACCAATA------ATTTGGAC-AAAAATAC-CTTTG-TTTT-------G---AAAA-A-AA-ACAATATTCTGTGTTAGCCTTCTTTAC-----------------ACATGA-TCTACAC--GTGATTC------T-GT--tct
gi|6 : ataa----T-----T-T-T---T----------ATTCTGTTTAATT-TATTTTTATT----TTTT-CTTACATGTATGTATATAATTA------------TTATAT--ATCAATA------ATTTGGAC-AAAAATAC-AATTG-TTTT-------G----------AG-ACA---TTCTGTGTCGGCCATATTTAT---T-G-TTTTTGTATCACATGA-TTAACAC--ATGACTctagtaagccacctggcgagatgtttatattaaggtcttgatttgcatttggcatactgcatatccggtaaa
gi|7 : tattttgTGGTAAATCTCACATATATGGAATGAGACATCATCTGTGGAATTTTATGCGAACGACTT-TCT-TTCCGATTCTTTC-----AA--TATTTAGT---GTA-ATTTATCATGAAATGACCGCTTAACCTTA--TT----T-----T-T-C---T----------ATTCTGTT--ATTTTA-------T----TTTT-CT----------------ATTG------------T-ATAT--GTTAATA------ATTTGGAC-AAAAACAC-CTTCG-TTTT-------G---AAAT---AT-ACA---TTCTGTGTCTGCCATCTATAC--GC-GCACTTTGCATCACATCA-TTGACAC--ATGATTC------A-GC--T-C----TGAGAAGTTTATAgtatagatatataagctagatatataggggtattggtactcctgcaaatttgttaatactttatattgaaatcaataaagtgaaatattctattgccaaaaattcttatctagagtgctgaa
gi|8 : gTCTTTC-----AA--TAAATAGT---GTA-ACTTATCGTAAAATAATTACTTG----TA--TTG---TTAAAAT-T-C---T----------ATTCTTTT---TT-TA-------T----TTTT-TT----------------ATT-------------C-ATATTCACTGTTA------ATTTGG-T-AAAA--------------------------AAAT-A-AA--------TC--TGTTGGCCATCTTTAC--AC-G--CTCTGGATTATGTGATTCTACACAAGCCACCT------A-G----------CGAGAAGTCTATA
gi|9 : caTTTTTTTCTCCAAAA--TA-CTAGTAGAGTGCACTGATCATGAAATGATTACTTG----TAAGTT----T-----T-T-A---T----------ATTCTGTT--AATATA-------T----TTTTTCT----------------GTCC------------G-ACAT--ATCACTA------ATTTGGAC-AAAAATAG-CTTTG-TTTTTTTTTTAA---AAAA-A-AG-ACA---TTCTGTGTTGGCCATCTTTACATGC-A-AA-TTGTCTCGCAGGA-TGGA------TGATCC------A-TT--T-C----TGAGAAGTCTATtcaggggtttaatatcacattggcttcgcaaaaaatgtgacgatgtgtaataaaaaacactattgtttgtcgatgtaaatcattta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TCATCCAATACAGGTAATTTTTTATGAAAATATGTAGGATGTTAACATAATCAAGGCATGATAGAAGTTGACAAACAAATAACATGATATGAGACGCTAAAGTTTATTGATTGTATAATTTGTATGTGTGGTATAAACATGCATGTATACTATATAAATATAGGTGGCCAAATTTTAACAATTTACA
Unaligned ( gi|20 ): ATACACTGCAGTCCAGATATTACGTGGTTCCCAGGAGCCAAAGAATTGGACCGTTGGTATAAATGGAACCACGTTATATCAG
Unaligned ( gi|22 ): ATATTAAATACACTGCAGTGGATATAACATGATTCACAGGAGTCAAAGTATCAGACCGTGATATAGACAGAACC
Unaligned ( gi|26 ): TCTATATAAGCCACCTAGTGACACGTCTATATATAGGTTCCCCCCA