lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 55555555555555555 1 333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 22222 3333 22 1 444444 22 11 00000000000000000000000000000000 222 111 1 7777777777777777 11 1 1111 1 11 111 1 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 44444444 1 1 1111 333333333 777777777777777777777777777777777777 2 22222 111 222222222222222222222222222222222222222222222222222222222222222222222222222 11 111 11 1111111111111 2222 2222 111 1111 111111 555555555555555555555 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 222 33333 444444444444444444444444444444444 44444444444 3333 1 1 11 222222 4444 222 77777777777777777777777777777777777777777777777777777777777777777777777777 2 22 7777777777777777777777
lowQualScore : 1 4 55555555555555555 0 444 77 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 66666 4444 66 4 11 4 6 111111 888 4 22 6 6 88 00 0 99999999999999999999999999999999 4 333 88 1 8 1 000 3 5555555555555555 00 0 9999 1 1 77 66 99 555 4 2 1 4 8 9 1 8 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111 0 3 6 3 3 9 1 3333 000000000 777777777777777777777777777777777777 3 7 0 00000 444 444444444444444444444444444444444444444444444444444444444444444444444444444 4 22 111 11 1 3333333333333 8 8 5 0000 6 9999 0 000 5555 999999 1 333333333333333333333 1 1 4 0 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 8 3 4444 0 0 4 4 1 6 2 8 444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 0 666 8 1 44444 111111111111111111111111111111111 8 8 66666666666 3 1 3333 2 0 0 33 444444 9 8888 777 33 2 77777777777777777777777777777777777777777777777777777777777777777777777777 5 0 4 22 6 4444444444444444444444 6 0 6
lowQualScore : . . ................. . ... .. ...................................................................................................................................................................................................................................................................................................................................................................................................................... . ..... .... .. . .. . . ...... ... . .. . . .. .. . ................................ . ... .. . . . ... . ................ .. . .... . . .. .. .. ... . . . . . . . . . ................................................................................................................................................ ........ . . . . . . . .... ......... .................................... . . . ..... ... ........................................................................... . .. ... .. . ............. . . . .... . .... . ... .... ...... . ..................... . . . . .. ........................................................................................................................................................................................................................................................................................................................................... . . . .... . . . . . . . . ... ....................................................................................... . . ... . . ..... ................................. . . ........... . . .... . . . .. ...... . .... ... .. . .......................................................................... . . . .. . ...................... . . .
lowQualScore : 5 0 55555555555555555 5 555 00 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 55555 5555 00 0 00 0 0 000000 555 0 00 0 0 00 00 7 33333333333333333333333333333333 7 333 33 0 3 0 333 3 7777777777777777 55 0 5555 2 4 44 00 00 888 4 8 4 6 2 2 4 2 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 77777777 7 3 7 8 5 5 2 0000 888888888 000000000000000000000000000000000000 0 8 2 22222 000 444444444444444444444444444444444444444444444444444444444444444444444444444 2 55 000 00 4 4444444444444 6 0 4 8888 2 8888 8 888 0000 222222 0 222222222222222222222 4 4 6 6 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 2 2 8888 8 6 4 8 4 4 2 2 000 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7 777 3 0 77777 444444444444444444444444444444444 0 0 99999999999 5 2 8888 0 5 0 88 222222 8 0000 888 55 5 22222222222222222222222222222222222222222222222222222222222222222222222222 2 3 0 88 0 8888888888888888888888 0 6 0
consensus : TTTGACNCTTNCTTNNNNNTGNNAGAGATANCCANCCANTCTCTCTGTATANNTTNGCTAAGGAGATNGATATTGATCNNGTN-GTGCCAGTNACTATTCTTGCGGCTTCATTTTG---AANTTTTTC-GAG-NANT-----TC-GA--T-TNATCAG-TACANTTATCCCANACTANCGAGGCG-TATTCTAAA--ATTGG-CGAANATACGA-----AATG-TTGGT-TAAT---G--TT--T-C-TATTGAGGGTNAATTTCGNTTT-NCTCATNATACCAA-AATT-TTG-TGAAGCA-GATTTTAAAATGTTT-TCGATATG-GTCGGTCCGTTTACCGTTTTTGCTNANTGTNACGCCNAAATGTTTGTGGGNTTCCNACAAATNNNATTTCNGGAATACGTTNTTAAATGTTANACAATAGTGATGGATTANGTAANCGTAGTCTCTTAGANGTGAACAACATCGCTTCAGTTTTNNNGGGGTTGAANNTNACTAGCCACTGTTTNGCCCANNNAGATANCATNANNAGATCGTGATNNATTANACCTTCAATATC--TTGG-ACNGTTGTGGCTG-GTANN-----NTAANG---AACTGTCGTCAGCAAACAAACGTG-CAA-AC-TAA-GA---AN-TGAATC-TGAN--ATATCATTNACATACATNAAAAATAA-AAAG-GGNCCAAGGACAGANCCTTGNGGTACNCCGGCATTGANNG-----NTTTNAGANNGGGAATATGTGCCNA-CGAAAAACNACCTNTTGGNNCCNACCGGNNAGGTGATCAGAAANTTACCGATNCTAAAAGTTGACNATTTANACCGTTATTTTGC------------------GT-AGTTTGAATAGTAGANCTTT-ATGCCAAACNCGGTCAAACGCCTTCGATACA------TCACAGAATACCATACAAGTATATTGTTTGTTA--TCTA-A-NGT--------TTGACAAATNTGGTGATATATGTCTATNAA---TTGGTA----GT----NGT--ACTGTGGC-CAGGNAGAAANCCAGACTGN----AATTTATA--AA--T--A-A--TT--ATTATCAA-NAA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTT-CCATAAGTTTNCC-AATACAGCTTA-ANAGT---GAA---ATTGGTCTATAATTAGA-----AACNAACGACTTGTCGCCCTTTTTGAAAATGG--GA-G-TA-ACT--AGCTGNCTTCCATGAAT-------TCTG-GA-AAANACTTNCTC----TAAGGAACGG----ATAAAA----TAA--TAANGGTTTTGAAATAGN----ATT--CGG-CANA--TTTTAGCATTCTGCGACTTATCANGTCATGACCACAG--GCCTTATTT---------ACAC-TAA-CAAG--NAGAT-ACGTC-T--TAAN---NTCAT-CTT-A-TAATA--TNA-A----AATTAT-AAGTCG--ATTT-T----GT--GTTCT-TA-AAAAT-AGT--TCAGGT-AAG----------CGTT-A-CATT-GAATCGTCCACGGTAGANATTGA-AGCAAAATAATCATTNAGACAGTCTGCTTTNTTCTGAT---TTG-TAT--GTA--AA---ATATTCT-------ATCATTA-ATAAAATCATTTAA-GGAGGAA-T--CGCTTGATGACGAATTATTTCCTTTCACAAAATAGCG--AATAATTTTCCAAAAT-C-TCTTTTATCA-TTNTNC-TGTAA---GTCGGCTATATTTAN-TTCTAAATTATTA-AA-AAAT-GTTCTTTGGCATGTNTTTTT-AGGTTATTAACTTTATTTC--GAA---TNTTTTTATATTTANCCCAGTC-N-TTTGATTTGCCCG-TACTTT--T-GCNG----C--TNNT--TT---TATATCTATCTCTT--NTT-NCGAC--AAAGTTTCCTTAATTT-TGAATCANACCANGGTTTATCATCGGGTC--AC-G-TA--CAGTCATTATTTTGGATGGTATACAT
Reference ( gi|2 ) : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTCCCACCCACAGTCTTTATATAATTTTTCTAACGAAACGGAT------CTTGTAAGT-CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTC-AAG-GGAT-----TCAGAAGAGGAAGCAG-TACAACCGTCCCATACAATAGATGCA-TACTCGAGA--ATAGGTCGAATATATGACA-AGAATAGTTGAT-TAAT---G--TTGCT-C-TATTAAGGGAAAATTTCAATTT-TTGCATTATACCAATTATTATTAATGAGGAA-G---TCAAGAT-TTT-TCTATATG-TTTTGTCCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTAT-AGTTTTGTACAAATATTATTTCAG-----TTTTATAAAAA---AAACAA--ATG-CGGATGAAG--ATTTTCATTT-TTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGA-ACGGTTGCAGCTGAATAAA-----ATAAAG---AACTATCATCAGCATATAATCGTG-CAACAC-TAA-GA---AG-TGAATC-TGAA--ATATCATTAACATACATGAGGAATAA-AAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTG-----GTTTAAGATCA-GA-TA-GTGCGGAGTGAATGACAACCTTTTGTTGTCTATTTAATAAAT--------ACT--TTGATAC----------CCATCT-TA--GTAATTTTGC------------------GT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTA--TCTA-G-CGT--------TTGACAGATATGATGATATATGTCGACTAA---TTGATA---CGT----TGT--ACTGTGGC-CAGGTAAAAAAACAGACTGA----AATTTATAC-AA--T--A-A--TTGAATTGTCAA-GAA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTT-CAAGAATCTTTCC-ACAACAGCTTA-AAAGT---GAA---ACGGGTCTATAATTAGA-----AGTTAACGTTTTATCTCCCTTTTTGAAGATGG--GA-G-TA-ATTTGAGCTATCTTCCATGAGT-------TTTG-GA-AAAAACTTTCTT---GTACAGAACGG----ATAAAAATGATAAC-TAATGGTTTTGTGATAGA----ATC--TG--CAAACCTCTTATCATTTTATGACTTATTTGGTCTAGACCACTG--GCTTTATTT---------GTAT-TAAGTGAG--GAGATAATATCAT--TAAT---TTCAT-CTTGAGTAACA--TCA-A----AACTATCAAGTCG--ATTT-T----GT--GTTCT-TA-AAAAT-AGT--TCAGG--AAG----------CATT-A-CATTTGAGTCATCTACGCTAGAGATTGA-CGAAAAATAATCATTTAAACAGTCTGCTTTGTCTTAAT---TTG-TA---GT---AA---ATATTTTGTT-TTGACCATTACACA-----ACTT---GGAGAAA----TGTTTGAAGAAGTATTATT---CTTAACAAAATGGCG--TATTATTTTTCAAAATGC-CCTTTTATCA-ATGTAC-TGCAA---GTTAGCTATATTTAT-TTCTAAGTTACTA-AA-AAATAGTTATTATGCATGTTTTTTTTAAGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATC-A-TTTAATTTGCCAGTTATTTT--T-GTTG----T--TCTT--TT---TATAT-TGTCTCTT--TTTCGCGAC--A---TTCTCCGAATTTCTGAATCATACCAGCGTTTATCGTCAGGTCTAAC-A-TA--TA--CAT--TTTTGAATGGTACACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGATAACCAGCCAATTTCTTTATATACTTTT------GAAATGGATATTGATCTTGTT-GTGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAG-TTGTCTTTCTC-------GTAGCAGGTACAGTTATCACACACTACCGAGGCG-TATTCTAAA--ATTGGGCGAATAAATGATATATAA-ATTTGAT-TAAGAGAG--TCCCTACGTATT----TTAAATTTAACTTT-TCTCATCATGCTAAGAATTTTGGATGCAGACTG---T-ATTATGTTT-TCAATATGAGTGTG-CCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGT-GATTTTCAACAAATGTTA---CAGGAATATTTTC---------AAACAATAGTGATGGATTACG--AACTT-GTTT-T--GATGTGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC---TGATATATTTGTAGCAGTGCTCG-----CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC-TGCT--ATATCATTTACGTAAATTAGAAATAGTAATG-GACCC-AGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGAGGA-T--GTGCCGA-CAAA----AACCTTTTGGCTCCTACCGGAAAGAT--------AGTTATCGA-AC----------CAATTT-AA--G--ATTTTGCCATTTATACCGTATTGTTGC-ATTTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACAGAAGACCATACA---------AGTGTTAAGTTTA-A-AGTCAGTTGAATTAACA-ATTTGGTGGTATATGTCGATTAA---TTGGTA------------T--ACAGTGG
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--CCCATTCACTCTCTCTGTATAAATTAGCTAAGGAGATCGAT------CGGGTG-GTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTC-AAT-CATT-----TCAGAATTATATTCAG-TACATCCAGCCCATACTATTGA-ACAGTATTCTAAACTATAAG--AAAGATA--------AAT--TTGGTCTAAT---GCATT--T-C-TACTAAAAGTGAATTTCATTTT-CCTCATGACACCAATAACC-TTA--GAGGCA-GATTTTGAAATATTA-TCGATATG-GTCATTCCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGaatgattaattatatatatacttatacacacaacgttccataagtttaccaatacaacttaacagggaaataggtctgtaattactaacacacgatgaatcgcctttcttataaaggggataacaagtgcatgaataagattcctcgcgaaaagacttattaaataaaatacataaaggttttgaaattgtacccatggttagttttaaaattctgcgacttactaggtcttaccctacagccttattaacacctaaacaagaaatcatgtcttcaaagtcgttctttaatatagttatgtcgttattttttctgtttgtccgtatgcttggttctggtagggttgaccctctatcatctacgttagagatagagcaaaaaaactcatttaaacaatttgctttctcattgtctgagaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgtggcaatattttgttccaagttgctgaaaaagcgtttttttgcatgttttttcaagttgttaaccttgttccttaaacgtttgtattttttccaatcattttggtttgtacttttggtcgctattttcttttgtctgtctctttgtcttgaagttgttcgtaactgtgagtcgtaccagggtttgtcataaggtcgaactgttacttctttggatgggatacattaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATC-GAGTGAAT-----TC-GATGTTTGATCAA-AGTAATTGTTCCAGACTAGAGAGGAA-TATTCAAGA--ATTGGTCGAACATTCGA-----AATG-------TAAT---T--TTG------ATTGAGGGAT--TTTCGACCGAGTG-AGTATAC-----GTT-TT--TGAAGCA-GATTTTAAAAT-CTTATCAACATG-ATCGGTCCATTTTCCGTCT---TTAAA-GTTACACTTAGATGTTTATGAGATTC-TACAAATTGAATTTCTA-----CGTTATTAAATGTTATATAA--------GAT-AAGTAATTGTAATCTCTTAAAGA-AAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT---ACTGATAAGGCTGAATAGT-----ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-AC-TGA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAA-TAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAG-----ATTTTAAATTG-GAATATGTACCC--TGAAAAACTACCTGTTGAGATCGATTTGTTAAGTGATCAGAAATT--CTAATTCTAAAAGTTGACCATTTATACCGTTATCCTG--------------------T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTA--TCAA-A-GGT--------TTGACAAATGTGATAATATATGTCTATAAA---TTGATA---GGT----AGT--AGAGTGACTTTGGCAAAAAGCCTGACTGG----TATTTATA--AA--TCAA-A--TT--ATTATCAA-GAA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTT-CAACAAGTTTTCCGAC-ACAACT----AAGT---AAAGACACAGGTCTGTAATTTGA-----CACCAATGACTTGTCTCCCTTTTTAGAATTGG--GA-GTTACATTT--GCAATCTTCCACAAA--------TCGG-GATATATACCTTCAC---TTAAAGAACGGTTAAATAAAATT--TAA---AATAGTTTTGAAATAGC----TTT--CGA-CACATATTCCAGCATTCTGTGACTGATCATATCATGACCACAG--GCCTTATTTACTGGTTAAGTAC-TAA-TAAGTTCAGAT-ATATCATCCTCAG---TT-AT-TATAA--AATG--TGA-AAGGGAATTAT-AAG------TTT-T----GT--AT-------AAAAT-A----TCAGGTAAAA----------CAAC-ACCATT---ATCGTTCACAGTGGATATTGA-AGCAAAATAATCATTAAGGCAGTCAGCTTTGTTCTGAT---TTATTATATGTA--AA---ATATT---------ATCATTA-ATAAAATCATTT---AAAGGAGGTT-TGCTTGATGACGAATTATTTCCTTTGACAAAATAGCG--AATAATTTT
gi|14 : CAATGTC--TTGG-A-GGTTGT---T---TAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAATT-TG-CAA-A--TAT-GACTTACCTGTATC-TGGT--ATATCATTAATAAACAAGATAAATAA-CAAG-GGACCAAGGACAGATCCTTGGGGTACGCC
gi|16 : A-AA---AA-TAAGTC-TGAA--GTACCATT----TACATAA--AACAA-AATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACG-----TTTTAAGact
gi|18 : --ATGCCATTTATATACAGAAAAAATAA-AAAGAGGACCAAAGATACAGCCTTGAGGTACTCC
gi|4 : ATTTTGC------------------ATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAA--TCCA-ATCCT--------TGGGCA-ATATGGTTATATATATCTTTGAG---TTGGTA---AAC----TGTCGAATGT--C-CAT-TAGAAAGTC---CTGATAAAAATTTATAA-AAATT--A-G--TTT-ATTTTCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTT-CCATAAGTTTACC-AACACAGCTTA-ATAAA---GAT---ATTGACCAATGATAAGA-----TGGC-ACGTCTGTTTGACCTTTCTTAAGATGA--GACA-TA-ACAGTAGTTGACTTCCATGA----------CTG-GA-AAacttt
gi|8 : tttctcctcttattccCCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTA--TCTATG-C-C--------TTGACAAATTTGATGATATATAT---CTAAAGGTTGGTAAACCGTGGAATGT--CCTCTGG--------GAAATCCAGATTGT----AATTTATA--AA--T--G-AGGTT--ATTATCAA-CAAGA-AAATT--ATATATATATGTTTGTACACAATTCTTT-CCATTAACTTGCC-AATACAGCTTA-AGAGT---GAA---ATTGGTCGATAATTAGACGCTTAGTT--TGTTTTA---CCTTTCTTGAAAAGTG--GA-A-TT-ACTAGGACTGATTTCCATAAA--------TCTG-GA-AAtttacattaaagtaaggaattattaacatagactgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|11 : caaaagaccttttaa---TTGAT------T----GGT--ACTGTCAC-CAGGAACAAATCCAGATTGC----ATTTT-TGCTAG--T--ATA--TC--ATTGTCAC-GAA-AGAAGATGAATACATGT-T-T--AAATA-TATTTTTTTCAAAAA-CTTTCT--CAATTG--TACAGAGTAGAGAA---ATTGGTCTATAGTTAGA-----AACGAGAGACTTGTCACCACCTTTGAATATCGTACA-G-AC-ATT--AGCTTCCTTCCAT--AT-------ATTA-GG-AACAA-TTCCTTCACGTAAGGAGTGA----TTGAAAA-GAGAACATAAGGGGTCTG----AGAGTTCATT--TG--CCAA-TTCTTAttcacatttaattcatgatctattaaataacagtactagaggtttagaaatactatattttatatact
gi|1 : T--ATATATAC-T-TATACACACAA--CGTT-CCATAAGTTTACC-AATACAACTTA-ACAGG---GAA---ATAGGTCTGTAATTACT-----AACACACGATGAATCGCCTTTCTTATAAAGGG--GA---TA-AC--AAG------TGCATGAATAAGATTCCTCGCGA-AAAGACTTATT----------AA-------ATAAAA----TACA-TAAAGGTTTTGAAATTGT----ACCCATGGTTAG---TTTTAAAATTCTGCGACTTACTAGGTCT-TACC-CTACAGCCTTATTA---------ACACCTAAACAAG--AA-ATCATGTCTT--CAAA---GTCGTTCTT---TAATA--T--------AGTTAT---GTCGTTATTT-TTTCTGTTTGTCCG-TA-TGCTT-GGT--TCTGG--TAG----------GGTTGA-CCCTCTA-TCATCTACGTTAGAGATAGAGCAAAAAA-ACTCATTTAAACAATTTGCTTTCTCATTGT---CTG--A---GA---AACATATATTTT
gi|5 : atttttgacactttcttctgtctgacagagataaccagccaatttctttatatacttttgaaatggatattgatcttgttgtgccagtaacaattctggcagcttcatgttgaattttttctaagttgtctttctcgtagcaggtacagttatcacacactaccgaggcgtattctaaaattgggcgaataaatgatatataaatttgattaagagagtccctacgtattttaaatttaacttttctcatcatgctaagaattttggatgcagactgtattatgttttcaatatgagtgtgccatttaccattattactgattgtaaggcccaagtgtttgtgattttcaacaaatgttacaggaatattttcaaacaatagtgatggattacgaacttgttttgatgtgaataatattgcttcagttttcaagggattgaacgtaactaaccactgttttgtccaagcagataacataactagatcgtgatttattataccttcaagatctgatatatttgtagcagtgctcgctaaggaagtgtcatctgcaaacaaacgtgcaagacttaataaattgtctgctatatcatttacgtaaattagaaatagtaatggacccaggacagacccctgcgttacaccagcattgacggacattgtatgagaagaggatgtgccgacaaaaaccttttggctcctaccggaaagatagttatcgaaccaatttaagattttgccatttataccgtattgttgcattttgaatagaaggtctttgtgccaaacacagtcgaatgctttagaaatatcacagaagaccatacaagtgttaagtttaaagtcagttgaattaacaatttggtggtatatgtcgattaattggtatacagtggaatgattaattaCATTCTGTGACTTATCAAGACATGACCACAG--GCTTTGTTT---------AC---------AG--GAAGTAAC----T--TAATCAGTTCAT-TTT--CTAATATTTCA-A----AATCAGTAAGTTT--ATTA-T----GG--GTT-T-TG-AAAAC-ACTACTTAGT--AAGTTGGTGATAATGTT-C-CATT---ATCAACAACAGTAGAAATTGA-AACAAAATACTCATTTAGACAGTCTGTTTTATTTTGGT---TTG-TT---ATGCGAA---ATTTACTGTTGTTG---TTTATATA-----ACTTAACGGAGGAATTACTGTT----GAAATATCCCC---TTTCACAAAGTGATG--AATAACTTTCCAAAA-GCTTCGTTTATC--ATTTGCTTGTAG---ATCGTTTA-AAGTATGTTCTAAATTATTG-AA-AG---------------GTGTTCTTTAGGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATC-G-TTTAATTTGCCAGATA---T--T-ACTG----C--TTTTGATT---TATATCTATATCTTAGTTTATAAATTGA---TTTT----ATTTTAGATTCAAACCAAGGTTTACTATCAGATATAAC-cggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgtggcaatattttgttccaagttgctgaaaaagcgtttttttgcatgttttttcaagttgttaaccttgttccttaaacgtttgtattttttccaatcattttggtttgtacttttggtcgctattttcttttgtctgtctctttgtcttgaagttgttcgtaactgtgagtcgtaccagggtttgtcataaggtcgaactgttacttctttggatgggatacattaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|6 : gAT---ATCAT-CTTCAGT--TA--TTATA----AAATGTGAAAGGG--AATTAT----TT--GTTTTGTATAAAAT-A----TCAGGT-AAA----------CA---A-CACCAGTATCGTTCACAGTGAATATTGA-AGCAAAATAATCATTAAGGCAGTCAGTTTTATTCTGATGTGTTA-TAT--GTA--AA---ATATT---------ATCATTA-ATAAAATCATTTAAAGGAGGTA----CACTTGATGACAAATTATTTCCTTTCACAAAATAGCGAATAATATCCATAAAACT---TCTTTTGTCATTTGTTC--GTAAATCGTTAAGTGTG---A------AAATTATTATAG-AAAT-GTTCTTTGGCATATATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-T-ATTGTTTTGCCCG--A-TTT--T-ACAG----CAATAGA--TT---TAAGTCTATCTCTT--AT--ACGAC--AAAGTTTCCTTAATTT-TGAATCAAACCATGATTGACAATCAGG----AC-G-TA--CAGTCATTATTTTAGATGGTATACATtgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|15 : acttaaaagctcagatA--TGA-A----AACTATCAATTCG--ATTT-T----AT--GTTC--TA-AGACTGAGT--TCAGG--AAG----------GATT-A-CATTTGAGTCATCTACGCTAGAGATTGA-CGAAAAATAATCATTCACACAATCTGCTTTTTCTTGAT---Ttccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|17 : ATTTTCCAAGATCC-CCTTTTATCA-TTATAC-TGCAA---GACAGCTAAATTTAT-TTCTAAGTAACGA-AA-AAATAag
gi|1 : TGGCAATATTTTG-TTCCAAGTTGCTG-AA-AAAGCGTTTTTTTGCATGTTTTTTC-AAGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTT--TTCCAATC-ATTTTGGTTTG-----TACTTT--TGGTCGCTATT--TTCT--TT---TGT-C-TGTCTCTT--TGTCTTGAA--G---TTGTTCGTAACTGTGAGTCGTACCAGGGTTTGTCATAAGGTCGAACTG-T---TA--CTT--CTTTGGATGGGATACAT
gi|9 : atttttgacactttcttctgtctgacagagataaccagccaatttctttatatacttttgaaatggatattgatcttgttgtgccagtaacaattctggcagcttcatgttgaattttttctaagttgtctttctcgtagcaggtacagttatcacacactaccgaggcgtattctaaaattgggcgaataaatgatatataaatttgattaagagagtccctacgtattttaaatttaacttttctcatcatgctaagaattttggatgcagactgtattatgttttcaatatgagtgtgccatttaccattattactgattgtaaggcccaagtgtttgtgattttcaacaaatgttacaggaatattttcaaacaatagtgatggattacgaacttgttttgatgtgaataatattgcttcagttttcaagggattgaacgtaactaaccactgttttgtccaagcagataacataactagatcgtgatttattataccttcaagatctgatatatttgtagcagtgctcgctaaggaagtgtcatctgcaaacaaacgtgcaagacttaataaattgtctgctatatcatttacgtaaattagaaatagtaatggacccaggacagacccctgcgttacaccagcattgacggacattgtatgagaagaggatgtgccgacaaaaaccttttggctcctaccggaaagatagttatcgaaccaatttaagattttgccatttataccgtattgttgcattttgaatagaaggtctttgtgccaaacacagtcgaatgctttagaaatatcacagaagaccatacaagtgttaagtttaaagtcagttgaattaacaatttggtggtatatgtcgattaattggtatacagtggaatgattaattatatatatacttatacacacaacgttccataagtttaccaatacaacttaacagggaaataggtctgtaattactaacacacgatgaatcgcctttcttataaaggggataacaagtgcatgaataagattcctcgcgaaaagacttattaaataaaatacataaaggttttgaaattgtacccatggttagttttaaaattctgcgacttactaggtcttaccctacagccttattaacacctaaacaagaaatcatgtcttcaaagtcgttctttaatatagttatgtcgttattttttctgtttgtccgtatgcttggttctggtagggttgaccctctatcatctacgttagagatagagcaaaaaaactcatttaaacaatttgctttctcattgtctgagaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgTTAA-CTCTAAATTATTA-AAGAAAT-GTTCTTTGGCATATTTTTAT--GGTTATTAACTTTATTTC--GAG---TATTTTTAT-TT-ATCCCAGTCTT-TTTGATTTGCCCG--ATTTTACA-GCAA----T--AGAT--TTAAGTATA----TCTCTT--AT--ATGAC--AAAGTTTCCTTAATTT-TGAATCAAACCATAATTGATCACCAGG----AC-G-TA--CAGTTATTATTTTAGATGGTATACATtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|12 : aaaattccaaaaatttgttttgtcatttgtttgtaaatcgttaagcgGAGTCATACCAAGGTTTATCATTGGGGCGTAC-AGTA---A--CCG--TTTTGGATGGTATGCATtcctttataattttcacaaaagattctgtaaacatttcacatgctgtatttaaattacaatttgacagacactgccaatcataattgcctattttattttttaacaactcaaagttagtttt
gi|13 : cagtcacatggatttcctgatcttaatgctttagatttcagtcgatctcttatttttgaatatgttctgatagtgAATCATACCATGGTTTATCATTTGGTC--GT-A-TAGTCA--CAT--ATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11111 333333 1111 111 88888888888888888888888888888 1 1 3 6666666666666666666666666666666666 11 444444444444444 1 11111 1 1111 222 111 11111111111111111111111111111111111111111111111111111111 1 111111 5555555555555555555 111 1 3333333333333333 11 111 111 33 2222 1111 888888888888888888888888888888888888888888 1 1 1 11 222222 111 111 44444 1111 111111111111 11111 111 1111 11 111 11 22222 111111 3333333333333 11111 77777777777777777777777777777777777777777777 2222222222 11 11 77777777777777777777777777777777777777777777777777777777777777777 111111111 2222222222 1111 22222 111111 11 5555555555555555555555555 11111 222 1 444444444 1 3333 2222 11111 22222222222 2222 11 111 111 1 4444 22222222222 2222222 44444 11111
lowQualScore : 222 1 55555 22 666 1 444 0 0 22 1 00000 0 1 444444 22 5555 1 4 66 4 777 1 4 11111111111111111111111111111 0 1 1 77 0 2 3 0 0 1 8888888888888888888888888888888888 4 00 44 33 11 1 666666666666666 5 44 1 2 4 4 44444 0 2 4 2 2222 1 1 6 1 0 555 666 333 7 33333333333333333333333333333333333333333333333333333333 2 1 0 3 0 0 6 6666 22 1 0 0 1 3 333 11 1 22 22 1 444444 77 7777777777777777777 1 777 3 4 9 0 2222222222222222 6 11 8 44 1 8888 4 3 77 1 1 1 2 1 6 9 666 444 777 1 222 88 7 2222 5555 1 6666 1 222222222222222222222222222222222222222222 1 3 4 7 0 66 33 3 1 1 8 3 4 1 3 4 6 1 333333 1 1 1 2 444 222 5 1 0 1 44444 3 7 2 1111 1 8 1 99 1 1 0 999999999999 33333 444 99 8 8 99 888 3 1 1 5 2 1 1 1 2222 1 8 3 88 00 5 55 99 222 0 99 00 3 22222 222222 6666666666666 6 33333 1 1 88888888888888888888888888888888888888888888 1 1 7 2222222222 4 88 0 2 1 9 33 2 33333333333333333333333333333333333333333333333333333333333333333 99 7 999999999 6 7777777777 4444 99 88888 999999 44 7777777777777777777777777 0 2 2 1 7 6 1 1 66666 888 0 3 7 888888888 0 66 2 0000 1111 3 99 3 7 2 8 99999 8 777 11111111111 1 99 6 6 666 0 66 0000 3 8 1 4 11 444 1 6 333 1 6 5 0000 8 1 99999999999 1 5 8 9999999 0 0 5 888 8 6 1 1 5 11111 00000
lowQualScore : ... . ..... .. ... . ... . . .. . ..... . . ...... .. .... . . .. . ... . . ............................. . . . .. . . . . . . .................................. . .. .. .. .. . ............... . .. . . . . ..... . . . . .... . . . . . ... ... ... . ........................................................ . . . . . . . .... .. . . . . . ... .. . .. .. . ...... .. ................... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . ... ... ... . ... .. . .... .... . .... . .......................................... . . . . . .. .. . . . . . . . . . . . ...... . . . . ... ... . . . . ..... . . . .... . . . .. . . . ............ ..... ... .. . . .. ... . . . . . . . . .... . . . .. .. . .. .. ... . .. .. . ..... ...... ............. . ..... . . ............................................ . . . .......... . .. . . . . .. . ................................................................. .. . ......... . .......... .... .. ..... ...... .. ......................... . . . . . . . . ..... ... . . . ......... . .. . .... .... . .. . . . . ..... . ... ........... . .. . . ... . .. .... . . . . .. ... . . ... . . . .... . . ........... . . . ....... . . . ... . . . . . ..... .....
lowQualScore : 333 0 00000 00 000 0 333 7 7 00 0 33333 7 0 000000 00 0000 0 0 55 2 555 0 2 00000000000000000000000000000 0 0 0 55 2 5 5 0 0 0 8888888888888888888888888888888888 2 55 22 00 22 0 222222222222222 0 00 2 8 0 2 22222 0 0 0 0 2222 0 0 5 0 7 000 777 000 3 00000000000000000000000000000000000000000000000000000000 0 0 7 7 7 7 7 7777 00 0 7 7 0 7 000 77 0 00 00 0 888888 55 8888888888888888888 0 555 2 0 8 0 2222222222222222 0 00 0 66 0 3333 3 7 77 0 0 0 2 0 5 2 000 888 555 0 777 77 3 3333 3333 0 3333 0 000000000000000000000000000000000000000000 0 3 0 3 0 88 22 2 2 0 0 2 0 0 2 6 4 0 000000 4 4 4 2 000 888 6 0 6 0 22222 3 3 5 5555 4 8 4 00 4 0 8 888888888888 00000 000 00 0 0 22 333 5 0 0 7 5 8 0 0 0000 0 0 7 22 88 2 88 22 888 3 22 33 7 88888 555555 2222222222222 7 77777 0 0 22222222222222222222222222222222222222222222 0 0 0 3333333333 7 33 2 0 0 8 88 5 00000000000000000000000000000000000000000000000000000000000000000 22 5 333333333 7 3333333333 2222 22 22222 222222 00 3333333333333333333333333 7 2 5 0 2 7 0 0 77777 000 0 2 0 222222222 0 88 5 2222 0000 2 00 2 0 5 0 22222 0 444 77777777777 0 22 7 7 888 8 00 6666 8 0 4 4 00 000 0 0 000 0 0 0 8888 0 0 44444444444 4 0 0 0000000 8 8 0 222 0 7 0 0 0 88888 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-CCCANCCACTNTCTTTATATAATTTTGCTAA-GAAACGGAT-TTG--CNNGT-GTGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GC-GNTTCA---GAN---TNATA--CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAAT-TGGTCGAATATACGACA-G--AAT-GTTGAT-TAAT---G--TT--TCTACTAAGGGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTNTCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGA-TTTT-TACAAATNTTATTTCAG---TA--TTTT-TAAA-G--A-ACAA--GTG-CGGAT-AAG--ATTTT-ATCT-TTAGANGTAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGT----AGC--TGAATANNATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-AC-TAA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNG--ATT---TAAGATCGG--ATATGTGCCGA-CGAAAGAC-ACCTTTTGNCGTCTATT-G--AGGTAATCA--GA-ACT--CTAATTCTAAGA-TT-GCCAT-TTATACCGTTATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACAAGTATACTGTTT---GTTATCTAANNCTTGACAAATNTGATGATATATGTCTATNAATTGGTAA---GTNGTANTGTGGC-CAGGTAGAAAN-CCAGATTGNAATTTATAC-AAT--A-A--TT--A--TTAT---CAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TC--GCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAAT--------TCTGGA-A-A---ANACTTTCTCGTACGG---AACGG----AT--AA-A----A--TA----A-TAANGGTTTTGAAATAGTATTC--GGCAAA--TNTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-NAAG--N--AGAT-A---TATC-TT-A---ANTTCA--TTTT--NT--AATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTT-A-CA-TT-G-ATCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTNT-----TCTGAT-T-TTG-TATGTAAAATATTCT------ATCGTTA-ATAAAATCACTTAAA-GGAGGAATCGCTTGATGACGAATTATTTCCTTTNACAAAATGGCGAATAATTTTC-CAAAA-T-C-TC-TTTTATCATTTGNTTGTAAATCGGCTA---TAT-TTANTTCT--AAGTTACTA-AA-AAA-T-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAATCNTTTTGATTTGCCNG-TA-TTTT-ACNGCAATATT--T--TTATGTCTATCTC-TT-GTT-NCGACAAAGTT-TCCTTAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGACNCTTNCTTNNNNNTGNNAGAGATANCCANCCANTCTCTCTGTATANNTTNGCTAAGGAGATNGATATTGATCNNGTNGTGCCAGTNACTATTCTTGCGGCTTCATTTTG---AANTTTTTCGA----GN-ANTTC----GAT---TNAT---CAG-TACANTTATCCCANACTANCGAGGCGTATTCTAAAAT-TGG-CGAANATACGA------AAT-GTTGGT-TAAT---G--TT--TCTATTGAGGGTNAATTTCGNTTTNCTCATNATACCAA-A-ATT-TTG-TGAAGCAGATTTTAAAATGTTTTCGATATG-GTCGGT-CCGTTTACCGTTTTTGCTNANTGTNACGCCNAAATGTTTGTGGGNTTCCNACAAATNNNATTTCNGGAATACGTTNT-TAAATGTTANACAATAGTGATGGATTANGTAANCGTAGTCTCTTAGANGTGAACAACATCGCTTCAGTTTTNNNGGGGTTGAANNTNACTAGCCACTGTTTNGCCCANNNAGATANCATNANNAGATCGTGATNNATTANACCTTCAATATC--TTGGACNGTTGT----GGC--TGG-TANNNTAANG---AACTGTCGTCAGCAAACAAACGTG-CAA-AC-TAA-GA---AN-TGAATC--T-GANATATCATTNACATACATNAAAAATAAAAAG-GGNCCAAGGACAGANCCTTGNGGTACNCCGGCATTGANNG--NTT---TNAGANNGGGAATATGTGCCNA-CGAAAAACNACCTNTTGGNNCCNACCGGNNAGGTGATCA--GAAANTTACCGATNCTAAAAGTTGACNAT-TTANACCGTTATT-TTGCGT-AGTTTGAATAGTAGANCTTT-ATGCCAAACNCGGTCAAACGCCTTCGATACA------TCACAGAATACCATACAAGTATATTGTTT---GTTATCTAANGTTTGACAAATNTGGTGATATATGTCTATNAATTGGTA----GTNGTACTGTGGC-CAGGNAGAAAN-CCAGACTGNAATTTATA--AAT--A-A--TT--A--TTAT---CAAN-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCCATAAGTTTNCCAAT---ACAGCTTAANAGTGAAATTGGTCTATAATTAGA-AACNAACGACTTG--TC--GCCCTTTTTGAAAATGG--GA-GTAAC--T--AG--CTGNCTTCCATGAAT--------TCTGGA-A-A---ANACTTNCTC-TAAGG---AACGG----AT--AA-A----A--TA----A-TAANGGTTTTGAAATAGNATTC--GGCANA--TTTT--AGCATTCTGCGACTTATCANGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-CAAG--N--AGAT-A---CGTC-TT-A---ANNTCA--TCTT--AT--AATA--TNAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTT-A-CA-TT-GAATCGTCCACGGTAGANATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTNT-----TCTGAT---TTG-TATGTAAAATATTCT------ATCATTA-ATAAAATCATTT-AA-GGAGGAATCGCTTGATGACGAATTATTTCCTTTCACAAAATAGCGAATAATTTTC-CAAAA-T-C-TC-TTTTATCATTNTNCTGTAAGTCGGCTA---TAT-TTANTTCT--AAATTATTA-AA-AAA-T-GTTCTTTGGCATG-TNTTTTTA-GGTTATTAACTTTATTTC--GAA---TNTTTTTATATTTANCCCAGTCNTTT-GATTTGCCCG-TACTTTT-GCNGC--TNNT--T--TTATATCTATCTC-TT-NTT-NCGACAAAGTT-TCCTTAATTT-T-GAATCANACCANGGTTTATCATCGGGTC--ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGATAACCAGCCAATTTCTTTATATACTTTTG------AAATGGATATTGATCTTGTTGTGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGT-CTTTC----------TCGTAG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAAT-TGGGCGAATAAATGATATATAAAT--TTGAT-TAAGAGAG--TC--CCTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGA-TTTTCAACAAATGTTA---CAGGAATA--TTTT-CAAA-------CAATAGTGATGGATTACG--AACTT-GT---TTTGATGTGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGT----AGCAGTGC-T-CGCTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGAGG---ATGTGCCGA-CAAAA----ACCTTTTGGCTCCTACCGGAAAGATAGTTATCGA-----ACCAATT-TAAGATTTTGCCAT-TTATACCG-TATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACAGAAGACCATACAAGTGTTAAGTTTAAAGTCAGTTGAA--TTAAC-AATTTGGTGGTATATGTCGATTAATTGGTA--------TACAGTGG
gi|1 : attT--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATC--GCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAATAAGATTCCTCGCGA-A-A---AGACTTATT----------AA-------AT--AA-A----A--TAC---A-TAAAGGTTTTGAAATTGTACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--A--AATC-A---TGTC-TTCA---AAGTCG--TTCT--TT--AATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGA-CC-CT-CTATCATCTACGTTAGAGATAGA-GCAAAAAAACTCATTTAAACAATTTGCTTTCTCATTGTCTGAaatgattaattatatatatacttatacacacaacgttccataagtttaccaatacaacttaacagggaaataggtctgtaattactaacacacgatgaatcgcctttcttataaaggggataacaagtgcatgaataagattcctcgcgaaaagacttattaaataaaatacataaaggttttgaaattgtacccatggttagttttaaaattctgcgacttactaggtcttaccctacagccttattaacacctaaacaagaaatcatgtcttcaaagtcgttctttaatatagttatgtcgttattttttctgtttgtccgtatgcttggttctggtagggttgaccctctatcatctacgttagagatagagcaaaaaaactcatttaaacaatttgctttctcattgtctgagaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgtggcaatattttgttccaagttgctgaaaaagcgtttttttgcatgttttttcaagttgttaaccttgttccttaaacgtttgtattttttccaatcattttggtttgtacttttggtcgctattttcttttgtctgtctctttgtcttgaagttgttcgtaactgtgagtcgtaccagggtttgtcataaggtcgaactgttacttctttggatgggatacattaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|1 : atttttgacactttcttctgtctgacagagataaccagccaatttctttatatacttttgaaatggatattgatcttgttgtgccagtaacaattctggcagcttcatgttgaattttttctaagttgtctttctcgtagcaggtacagttatcacacactaccgaggcgtattctaaaattgggcgaataaatgatatataaatttgattaagagagtccctacgtattttaaatttaacttttctcatcatgctaagaattttggatgcagactgtattatgttttcaatatgagtgtgccatttaccattattactgattgtaaggcccaagtgtttgtgattttcaacaaatgttacaggaatattttcaaacaatagtgatggattacgaacttgttttgatgtgaataatattgcttcagttttcaagggattgaacgtaactaaccactgttttgtccaagcagataacataactagatcgtgatttattataccttcaagatctgatatatttgtagcagtgctcgctaaggaagtgtcatctgcaaacaaacgtgcaagacttaataaattgtctgctatatcatttacgtaaattagaaatagtaatggacccaggacagacccctgcgttacaccagcattgacggacattgtatgagaagaggatgtgccgacaaaaaccttttggctcctaccggaaagatagttatcgaaccaatttaagattttgccatttataccgtattgttgcattttgaatagaaggtctttgtgccaaacacagtcgaatgctttagaaatatcacagaagaccatacaagtgttaagtttaaagtcagttgaattaacaatttggtggtatatgtcgattaattggtatacagtggaatgattaattaGGCAA---TAT-TTTGTTCC--AAGTTGCTG-AA-AAAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTG-----TACTTTTGGTCGC--TATT--TTCTTTTGTCTGTCTCTTT-GTC-TTG---AAGTTGTTCGTAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACATgaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgtggcaatattttgttccaagttgctgaaaaagcgtttttttgcatgttttttcaagttgttaaccttgttccttaaacgtttgtattttttccaatcattttggtttgtacttttggtcgctattttcttttgtctgtctctttgtcttgaagttgttcgtaactgtgagtcgtaccagggtttgtcataaggtcgaactgttacttctttggatgggatacattaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|10 : atttttgacactttcttctgtctgacagagataaccagccaatttctttatatacttttgaaatggatattgatcttgttgtgccagtaacaattctggcagcttcatgttgaattttttctaagttgtctttctcgtagcaggtacagttatcacacactaccgaggcgtattctaaaattgggcgaataaatgatatataaatttgattaagagagtccctacgtattttaaatttaacttttctcatcatgctaagaattttggatgcagactgtattatgttttcaatatgagtgtgccatttaccattattactgattgtaaggcccaagtgtttgtgattttcaacaaatgttacaggaatattttcaaacaatagtgatggattacgaacttgttttgatgtgaataatattgcttcagttttcaagggattgaacgtaactaaccactgttttgtccaagcagataacataactagatcgtgatttattataccttcaagatctgatatatttgtagcagtgctcgctaaggaagtgtcatctgcaaacaaacgtgcaagacttaataaattgtctgctatatcatttacgtaaattagaaatagtaatggacccaggacagacccctgcgttacaccagcattgacggacattgtatgagaagaggatgtgccgacaaaaaccttttggctcctaccggaaagatagttatcgaaccaatttaagattttgccatttataccgtattgttgcattttgaatagaaggtctttgtgccaaacacagtcgaatgctttagaaatatcacagaagaccatacaagtgttaagtttaaagtcagttgaattaacaatttggtggtatatgtcgattaattggtatacagtggaatgattaattatatatatacttatacacacaacgttccataagtttaccaatacaacttaacagggaaataggtctgtaattactaacacacgatgaatcgcctttcttataaaggggataacaagtgcatgaataagattcctcgcgaaaagacttattaaataaaatacataaaggttttgaaattgtacccatggttagttttaaaattctgcgacttactaggtcttaccctacagccttattaacacctaaacaagaaatcatgtcttcaaagtcgttctttaatatagttatgtcgttattttttctgtttgtccgtatgcttggttctggtagggttgaccctctatcatctacgttagagatagagcaaaaaaactcatttaaacaatttgctttctcattgtctgagaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgtTGATCTTTACTTGATAATGCAAGAGA--CCCATTCACTCTCTCTGTATAAATTAGCTAAGGAGATCGAT------CGGGTGGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TC-ATTTCA---GAA---TTATATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAACTATAA-GAAAGATA---------AAT--TTGGTCTAAT---GCATT--TCTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TTGAT------TGGTACTGTCAC-CAGGAACAAAT-CCAGATTGCATTTT-TGCTAGT--ATA--TC--A--TTGT---CACG-AA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TC--ACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATAT--------TA-GGA-ACA---ATTCCTTCACGTAAGG---AGT-G----ATTGAA-A----A--GAGAACA-TAAGGGGTCTGAGA
gi|12 : -GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCATgttcatttgccaattctta
gi|13 : cagtcacatggatttcctgatcttaatgctttagatttcagtcgatctcttatttttgaatatgttctgatagtgAATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGTTTAAATC--T-----CTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A--TAT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATT-A-CA-TTTGAGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTT-----CTTGAT---Tact
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACG--TTT---TAAGag
gi|17 : ATTTTC-CAAGA-T-C-CCCTTTTATCATTATACTGCAAGACAGCTA---AAT-TTATTTCT--AAGTAACGA-AA-AAA-T-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTCCCACCCACAGTCTTTATATAATTTTTCTAACGAAACGGATCTTG--TAAGT----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GG-GATTCAGAAGAG---GAAG---CAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAAT-AGGTCGAATATATGACAAG--AATAGTTGAT-TAAT---G--TTGCTCTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGAT-TTTTCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAG-TTTTGTACAAATATTATTTCAG-------TTTTATAAAAA--AAACAA--ATG-CGGATGAAG--ATTTTCATTT-TTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGC----AGC--TGAATAAAATAAAG---AACTATCATCAGCATATAATCGTG-CAACAC-TAA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTG--GTT---TAAGATCAG--ATA-GTGCGGAGTGAATGACAACCTTTTGTTGTCTATT-------TAAT-A--AATACTT--TGATAC----------CCATCTTA----GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATT---ATTATCTAGCGTTTGACAGATATGATGATATATGTCGACTAATTGATAC---GTTGTACTGTGGC-CAGGTAAAAAA-ACAGACTGAAATTTATAC-AAT--A-A--TTGAA--TTGT---CAAG-AA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TC--TCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGT--------TTTGGA-A-A---AAACTTTCTTGTACAG---AACGG----AT--AA-AAATGA--TA----ACTAATGGTTTTGTGATAGAA-TC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--G--AGATAA---TATCATT-A---ATTTCA--TCTTGAGT--AACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATT-A-CATTT-GAGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGT-----CTTAAT---TTG-TA-GT-AAATATTTTGTTTTGACCATTACACA-----ACTT----GGAGAAAT-GTTTGAAGAAGTATTATT---CTTAACAAAATGGCGTATTATTTTT-CAAAA-TGC-CC-TTTTATCAATGTACTGCAAGTTAGCTA---TAT-TTATTTCT--AAGTTACTA-AA-AAA-TAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCATTT-AATTTGCCAGTTATTTTT-GTTGT--TCTT--T--TTATAT-TGTCTC-TT-TTTCGCGACA---TT-CTCCGAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC----GATGTTTGAT---CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAAT-TGGTCGAACATTCGA------AAT-GT------AAT-------T--TTGATTGAGGG--ATTTTCGACCGAGTGAGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTT----AAAGTTACACTTAGATGTTTATGAGATTC-TACAAATTGAATTTC-----TACGTTAT-TAAATGTTATATAA--------GAT-AAGTAATTGTAATCTCTTA-AAGAAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAA----GGC--TGAATAGTATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-AC-TGA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAG--ATT---TTAAATTGG-AATATGTACCC--TGAAAAACTACCTGTTGAGATCGATTTGTTAAGTGATCA--GAAATT--CTAATTCTAAAAGTTGACCAT-TTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTT---GTTATCAAAGGTTTGACAAATGTGATAATATATGTCTATAAATTGATAG---GTAGTAGAGTGACTTTGGCAAAAAG-CCTGACTGGTATTTATA--AATCAA-A--TT--A--TTAT---CAAG-AA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TC--TCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA---------TCGGGATA-T---ATACCTTCACTTAAAG---AACGGTTAAAT--AA-A----ATTTA----A--AATAGTTTTGAAATAGCTTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTC--AGAT-A---TATC----A---TCCTCAGTTATT--ATAAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CAAC-ACCA-TT---ATCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGT-----TCTGATTTATTA-TATGTAAAATAT--T------ATCATTA-ATAAAATCATTTAAA-GGAGG-TTTGCTTGATGACGAATTATTTCCTTTGACAAAATAGCGAATAATTTT
gi|4 : ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCT---GGAATCCAATCCTTGGGCAATATGGTTATATATATCTTTGAGTTGGTAAACTGTCG-AATGT--C-CAT-TAGAAAGTCCTGATAAAAATTTATA--AA---A-A--TT--AGTTTATTTTCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TT--GACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA-----------CTGGA-A-A---
gi|5 : tttctcctcttattccGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--T--AA----------C-TT-AATCAGTTCA--TTTT--CT--AATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTT-C-CA-TT---ATCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTAT-----TTTGGT---TTGTTATGCGAAATTTACT------GTTGTTG-TTTATATAACTT-AACGGAGGAATTAC-TGTTGA--AA-TATCCCCTTTCACAAAGTGATGAATAACTTTC-CAAAA-G-CTTC-GTTTATCATTTGCTTGTAGATCGTTTAAAGTAT----GTTCT--AAATTATTG-AA-AGG-T-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCGTTT-AATTTGCCAGATA---TT-ACTGC--TTTTGAT--TTATATCTATATC-TTAGTT-T--ATAAA-TT-GATTTTATTT-TAGATTCAAACCAAGGTTTACTATCAGATtttacattaaagtaaggaattattaacatagactgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : ---------ACT--TA-AAAG--CTCAGAT-ATATCATC-TT-C---AGTT-A--TTAT--AA--AATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA---A-CA-CCAGTATCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTAT-----TCTGATGTGTTA-TATGTAAAATATT--------ATCATTA-ATAAAATCATTTAAA-GGAGGTA-CACTTGATGACAAATTATTTCCTTTCACAAAATAGCGAATAATATCCATAAAA-C-T-TC-TTTTGTCATTTGTTCGTAAATCG-----------TTAAGTGTGAAAATTATTATAG-AAA-T-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTCTATT-GTTTTGCCCG--A-TTTT-ACAGCAATAGA--T--TTAAGTCTATCTC-TT-A-T-ACGACAAAGTT-TCCTTAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATataactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : AGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTT---ATTATCTATGCCTTGACAAATTTGATGATATATATCTAAAGGTTGGTAAACCGTGG-AATGTCCT-CTGG--GAAAT-CCAGATTGTAATTTATA--AAT--G-AGGTT--A--TTAT---CAAC-AAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTG--TTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAAT---------CTGGA-A-ATTCACATTTAATT-CATGATCTATTAA----AT--AACA----G--TA----C-TAGAGGTTTAGAAATACTATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTTTGTCATTTGTTTGTAAATCG-TTA---AGCGTTAACTCT--AAATTATTA-AAGAAA-T-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAGA--T--TTAAGTATATCTC-TT-AT--ATGACAAAGTT-TCCTTAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 666666666666666666666666666 1 6666666666666666666666666666666666 11 444444444444444 1 11111 1 1 1111 33333 77777777777777777 222222222222 111 11 11 11111 111 1 3333333333333333 11 1 3333333 11 1 22 4444444444444 8888888888888888888888888888888888888888888 1 1 11 2222222222 111 1111 11111 11 111111 333333333333333333 11111111 1111 11 11 11 22222 111111 22222 1111111 1 11 1111 77777777777777777777777777777777777777 111 11 111 11 11 4444444444444444444444444444444444444444444444 1 1111 111111111 2222222222 1111 22222 111111 11 6666666666666666666666666666 11111 11 22 11 2222 22222222 22222222222 2222 11 111 111 11 33 333333333 33333333 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 777777777777777777777777777 0 2 1 0 11 0 2 1 333 3 2 4 6666666666666666666666666666666666 1 00 00 1 11 0 222222222222222 0 44 1 1 0 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 11111111111111111 888888888888 0 555 1 1 0 6 1111 1 1 22 33 11 66 88 66666 1 777 3 1 9 0 2222222222222222 6 8 11 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 3 22 0000000000000 888 2222222222222222222222222222222222222222222 3 2 2 5 0 2 33 3 1 8 3 1 1 3 1 5555555555 1 1 666 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 3 77 3 44 99 000000000000000000 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 88 3 0 99 00 1 22222 222222 44444 5555555 1 0 11 1 2222 55555555555555555555555555555555555555 1 0 444 33 0 555 1 33 0 0 9 33 2 4444444444444444444444444444444444444444444444 1 0 4 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 4444444444444444444444444444 0 0 1 1 6 1 1 66666 88 99 4 3 7 88 4 33 4 3 2 3 3 1111 3 99 3 7 1 6 00000000 6 1 4 6 11111111111 1 99 6 6 666 0 44 0000 3 8 1 1 11 444 1 0 000 77 3 00 6 99 1 222222222 7 2 77777777 99999 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . ........................... . . . . .. . . . ... . . . .................................. . .. .. . .. . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... ................. ............ . ... . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . . .. .. . .... . . .. . . . . . . . . ... . . ....... .. . .. ............. ... ........................................... . . . . . . .. . . . . . . . . .......... . . ... . ... . .... . . ..... . . . .. . ...... . . .. . .. .. .................. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. . . .. .. . ..... ...... ..... ....... . . .. . .... ...................................... . . ... .. . ... . .. . . . .. . .............................................. . . . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . ..... .. .. . . . .. . .. . . . . . .... . .. . . . . ........ . . . . ........... . .. . . ... . .. .... . . . . .. ... . . ... .. . .. . .. . ......... . . ........ ..... ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 888888888888888888888888888 0 5 2 8 88 2 5 0 888 0 5 2 5555555555555555555555555555555555 2 55 55 0 55 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 77777 00000000000000000 333333333333 7 777 0 0 7 7 3333 0 0 00 88 00 88 22 22222 2 555 2 0 8 0 2222222222222222 0 0 00 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 3 77 7777777777777 333 3333333333333333333333333333333333333333333 2 5 5 8 0 5 22 2 2 0 2 0 0 2 0 0000000000 0 4 222 8 000 0 0000 0 2 22222 4 4 0 33 0 000000 0 7 77 7 33 22 222222222222222222 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 33 7 3 22 33 0 88888 555555 33333 3333333 0 0 00 4 8888 00000000000000000000000000000000000000 0 8 888 88 2 000 0 88 2 2 8 88 5 8888888888888888888888888888888888888888888888 0 0 4 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 2222222222222222222222222222 7 3 0 0 7 0 0 77777 88 00 2 2 0 55 2 88 0 5 5 2 0 0000 2 00 2 0 0 7 55555555 7 0 2 7 77777777777 0 22 7 7 888 8 88 6666 8 0 4 0 00 000 0 8 222 33 3 33 7 22 0 555555555 8 5 00000000 55555 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATT---TTGAAGTTTTTCGA----GCGN-TTCAGAA---TNGT-AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANA---G---AAT-GTTGAT-TAAT---G--TT--TCTACTAAGGGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-ATTTTT-AANGTAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACG-TGCAA-ACT-AA-GA---AN-TGAATC-T--GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGG-ATA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTA-TTG---AGGTAATNA--G-AACTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATACA------TCACAAAATACCATACAAGNANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAAN-CCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTTT--CTCGTACGGAAC----GG-T-A----AT--AA-A----A--TA----A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-NAAG--N--AGAT-AT---ATCA--TT-NAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTNT-----TCTGAT-T--TTATATGTAAAATAT-CTGTCGTTA--ATNANATNACTTAAAGGAGGAATCGCTTGATGACGAATTATTTCCTTTNACAAAATGGCGAATAATTTTC-CAAAA-T-C-TC-TTTT-ATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACTA-AA-AAA-T-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT--ACNGC-ATNN-T--TTTATGTCTATCTCTT-ATT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATT---TTGAAGTTTTTCGA----GCGN-TTCAGAN---TNAT-A--CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGACA---G---AAT-GTTGAT-TAAT---G--TT--TCTACTAAGGGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTNTCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TATTTTTAAAGA----A--CAAGTG-CGGAT-AAG--ATTTT-ATCTTTAGANGTAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATANN-ATAAAG---AACTGTCGTCAGCANACAAACG-TGCAA-ACT-AA-GA---AN-TGAATC-T--GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGG-ATATGTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTA-TTG---AGGTAATCA--G-AACTCTAATTCTAAGA-TT--G-CCATTTATACCGTTATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACAAGTATACTGTTTGTTATCTAANNCTTGACAAATNTGATGATATATGTCTA---TNAATTGGTAAGTNGT--ANTGTGGC-CAGGTAGAAAN-CCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTTT--CTCGTACGGAAC----GG--------AT--AA-A----A--TA----A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TNTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-NAAG--N--AGAT-AT---ATC---TT-AANTTCATTTT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TT-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTNT-----TCTGAT-T--TTGTATGTAAAATATTCTATCGTTA--ATAAAATCACTTAAAGGAGGAATCGCTTGATGACGAATTATTTCCTTTNACAAAATGGCGAATAATTTTC-CAAAA-T-C-TC-TTTT-ATCATTTGNTTGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACTA-AA-AAA-T-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAATCNTTTTGATTTGCCNG-TA-TTTT--ACNGCAATAT-T--TTTATGTCTATCTCTT-GTT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATG---TTGAATTTTTTCTAAGTTGTCT-TTC-------TCGT-AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATA---AAT--TTGAT-TAAGAGAG--TC--CCTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-GTTTT--GATGTGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACG-TGCAAGACTTAATAA---AT-TG--TC-T--GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GG-AT--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTA-CCGGAAAGATAGTTATCG-AACC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGA----------------AATATCACAGAAG---ACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATGT-C--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATCGCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT---------A---AGA-TTC--CTCG--CGAAAA----GACTTATTAAAT--AA-A----A--TAC---A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--A--AATC-AT---GTC---TTCAAAGTCGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCTTTCTCATTGTCTGA
gi|1 : attATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTG-AA-AAAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTG-----TA-CTTTTGGTCGCTATTT-T--CTTTTGTCTGTCTCTTTGTC-TT-GA---AGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACATgaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagattttccagtattgatttggattgtttgtccgagatgtggcaatattttgttccaagttgctgaaaaagcgtttttttgcatgttttttcaagttgttaaccttgttccttaaacgtttgtattttttccaatcattttggtttgtacttttggtcgctattttcttttgtctgtctctttgtcttgaagttgttcgtaactgtgagtcgtaccagggtttgtcataaggtcgaactgttacttctttggatgggatacattaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|10 : atttttgacactttcttctgtctgacagagataaccagccaatttctttatatacttttgaaatggatattgatcttgttgtgccagtaacaattctggcagcttcatgttgaattttttctaagttgtctttctcgtagcaggtacagttatcacacactaccgaggcgtattctaaaattgggcgaataaatgatatataaatttgattaagagagtccctacgtattttaaatttaacttttctcatcatgctaagaattttggatgcagactgtattatgttttcaatatgagtgtgccatttaccattattactgattgtaaggcccaagtgtttgtgattttcaacaaatgttacaggaatattttcaaacaatagtgatggattacgaacttgttttgatgtgaataatattgcttcagttttcaagggattgaacgtaactaaccactgttttgtccaagcagataacataactagatcgtgatttattataccttcaagatctgatatatttgtagcagtgctcgctaaggaagtgtcatctgcaaacaaacgtgcaagacttaataaattgtctgctatatcatttacgtaaattagaaatagtaatggacccaggacagacccctgcgttacaccagcattgacggacattgtatgagaagaggatgtgccgacaaaaaccttttggctcctaccggaaagatagttatcgaaccaatttaagattttgccatttataccgtattgttgcattttgaatagaaggtctttgtgccaaacacagtcgaatgctttagaaatatcacagaagaccatacaagtgttaagtttaaagtcagttgaattaacaatttggtggtatatgtcgattaattggtatacagtggaatgattaattatatatatacttatacacacaacgttccataagtttaccaatacaacttaacagggaaataggtctgtaattactaacacacgatgaatcgcctttcttataaaggggataacaagtgcatgaataagattcctcgcgaaaagacttattaaataaaatacataaaggttttgaaattgtacccatggttagttttaaaattctgcgacttactaggtcttaccctacagccttattaacacctaaacaagaaatcatgtcttcaaagtcgttctttaatatagttatgtcgttattttttctgtttgtccgtatgcttggttctggtagggttgaccctctatcatctacgttagagatagagcaaaaaaactcatttaaacaatttgctttctcattgtctgagaaacatatattttcggagctgtcggtaagtgttgttttcagtattcggattgtttcggatttactattatttttaaccaagttcctttagTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAA---TTAT-ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAA---GATAAAT--TTGGTCTAAT---GCATT--TCTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAAT-CCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCACG-AA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TCACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA---ATTCCTT--CACGTAAGGAGT-----G--------ATTGAA-A----A--GAGAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT--AATGCTTTAGAT--TTCA-GTCGATCTCTT-ATT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TT-TGCAA-A-T-AT-GACTTACCTGTATC-T--GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTT-----CTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC-T--GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : ATTTTC-CAAGA-T-C-CCCTTTT-ATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACGA-AA-AAA-T-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTT---TTGAAGCTTTTCAA----GGGA-TTCAGAA---GAGG-AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAA--G---AATAGTTGAT-TAAT---G--TTGCTCTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCATTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCG-TGCAACACT-AA-GA---AG-TGAATC-T--GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAG-ATA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTA-TT-------TAATAA--A-TACTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAAA-ACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TCTCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A---AAACTTT--CTTGTACAGAAC----GG--------AT--AA-AAATGA--TA----ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--G--AGATAAT---ATCA--TT-AATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGT-----CTTAA--T--TTGTA-GT-AAATATTTTGTTTTGACCATTACACAACTT---GGAGAAAT-GTTTGAAGAAGTATTATT---CTTAACAAAATGGCGTATTATTTTT-CAAAA-TGC-CC-TTTT-ATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACTA-AA-AAA-TAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT--GTTGT--TCT-T--TTTATAT-TGTCTCTT-TTTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATT---TTGTAATTTATCGA----GTGAATTC-GATGTTTGATCA--AAG-TA--ATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGA---------AAT-GT------AAT-------T--TTGATTGAGGG--ATTTTCGACCGAGTGAGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAA------GAT-AAGTAATTGTAATCTCTTAAAGAAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CT--GT-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAAG-CCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TCTCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T---ATACCTT--CACTTAAAGAAC----GGTTAA----AT--AA-A----ATTTA----A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTC--AGAT-ATATCATC---CT-CAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CAACAC-CA-TT----A-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGT-----TCTGAT-TTATTATATGTAAAATAT--TATCATTA--ATAAAATCATTTAAAGGAGG-TTTGCTTGATGACGAATTATTTCCTTTGACAAAATAGCGAATAATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CAT-TAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-G--TTT-ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TTGACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-A---
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--T--AACT-TA---ATC-------AGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTAT-----TTTGGT-T--TGTTATGCGAAATTTACTGTTGTTG--TTTATATAACTTAACGGAGGAATTAC-TGTTGA--AA-TATCCCCTTTCACAAAGTGATGAATAACTTTC-CAAAA-G-CTTC-GTTT-ATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATTG-AA-AGG-T-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT--ACTGC--TTT-TGATTTATATCTATATCTTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Atttacattaaagtaaggaattattaacatagactgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : ---------ACT--TA-AAAG--CTCAGAT-AT---ATCATCTT-CAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTAT-----TCTGATGTG-TTATATGTAAAATAT--TATCATTA--ATAAAATCATTTAAAGGAGGTA-CACTTGATGACAAATTATTTCCTTTCACAAAATAGCGAATAATATCCATAAAA-C-T-TC-TTTT-GTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATTATAG-AAA-T-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT--ACAGCAATAG-A--TTTAAGTCTATCTCTT-A-T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : AGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAAT-CCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAAC-AAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTGTTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAA-TCTGGA-A-ATTCACA-TTTAATTCAT---GATCTATTAA--------AT--AACA----G--TA----C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTTT-GTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATTA-AAGAAA-T-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTT--TATTTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT--ACAGCAATAG-A--TTTAAGTATATCTCTT-A-T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 444444444444444444444444444 1 666666666666 1 44444444 11 11111 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 4444444444444 88888888888888888888888888888888888888888 2 1 11 222222 1111 11111 11 111111 33333333333333 11111111 1111 11 11 11 22222 111111 22222 1111111 1 11 1111 666666666666666666666666666666666666 111 11 111 11 11 55555555555555555555555555 22 1 1111 111111111 2222222222 1111 22222 111111 11 7777777777777777777777777777 11 55555555555 11111 111 2222 11 111 1 22222222 22222222222 2222 11 111 111 11 1111 4444444444 2222222 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 777777777777777777777777777 0 1 0 11 0 2 1 333 3 2 4 1 333333333333 0 11111111 33 22 33333 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 1 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 0000000000000 888 77777777777777777777777777777777777777777 3 2 2 0 0 66 33 3 1 8 3 1 1 3 1 1 333333 0 1 1 1 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 1 77 3 44 99 22222222222222 99 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 88 3 0 99 00 1 22222 222222 44444 5555555 1 0 11 1 2222 222222222222222222222222222222222222 1 0 444 33 0 555 0 33 0 0 9 33 2 22222222222222222222222222 8 22 1 0 1 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 0000000000000000000000000000 0 0 1 1 6 1 3 6 55 4 6 3 8 66666666666 1 11111 1 1 777 444 2222 0 11 8 444 0 3 1 1 6 6 6 00000000 6 1 0 4 6 11111111111 1 99 666 6 6 0 44 0000 3 8 1 1 11 444 1 6 000 55 1 0000 6 1 2222222222 7 2 6 8888888 1 2 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . ........................... . . . .. . . . ... . . . . ............ . ........ .. .. ..... . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............. ... ......................................... . . . . . .. .. . . . . . . . . . ...... . . . . . ... . .... . . ..... . . . .. . ...... . . .. . .. .. .............. .. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. . . .. .. . ..... ...... ..... ....... . . .. . .... .................................... . . ... .. . ... . .. . . . .. . .......................... . .. . . . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . . .. . . . . ........... . ..... . . ... ... .... . .. . ... . . . . . . . ........ . . . . . ........... . .. ... . . . .. .... . . . . .. ... . . ... .. . .... . . .......... . . . ....... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 555555555555555555555555555 0 2 8 88 2 5 0 888 0 5 2 0 222222222222 0 88888888 88 00 55555 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 0 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 7777777777777 333 77777777777777777777777777777777777777777 2 5 5 0 0 88 22 2 2 0 2 0 0 2 0 0 000000 8 4 0 0 8 000 0 0000 4 2 22222 4 4 0 33 5 000000 0 0 77 7 33 22 55555555555555 22 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 33 7 3 22 33 0 88888 555555 33333 3333333 0 0 00 4 8888 444444444444444444444444444444444444 0 8 888 88 2 000 2 88 2 2 8 88 5 22222222222222222222222222 0 00 0 0 0 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 8888888888888888888888888888 7 3 0 0 7 0 3 7 88 0 0 8 0 22222222222 4 88888 0 0 222 000 4444 8 00 0 222 8 6 0 4 0 7 7 55555555 7 0 7 2 7 77777777777 0 22 888 7 7 8 88 6666 8 0 4 0 00 000 0 0 222 88 0 8888 7 0 7777777777 8 5 7 2222222 0 5 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATT---TTGAAGTTTTTCGA----GCGN-TTCAGAATCGT---A-N-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANAT--G---AAT--TTGAT-TAAN---G-A-TT--TCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACAAGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAA-GAA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTTT--CTCGTACGGAACGGTTA----AAT--AA-A----A--TA----A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--N--AGAT-ATATCATC-TCAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATA-TA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATT---TTGAAGTTTTTCGA----GCGN-TTCAGAATNGT---A-N-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANA---G---AAT-GTTGAT-TAAT---G---TT--TCTACTAAGGGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAANG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATACA------TCACAAAATACCATACAAGNANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-NCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAA-GAA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTTT--CTCGTACGGAACGGT------AAT--AA-A----A--TA----A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-NAAG--N--AGAT-ATATCAT--TNAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTNTTCTGAT-T--TTATATGTAAAATA-T----------CTGTCGTTA--ATNANATNACTTAAAGGA---GGAATCGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATG---TTGAATTTTTTCTAAGTTGTCT-TTC----TCGT---A-G-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATA---AAT--TTGAT-TAAGAGAG---TC--CCTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCAC-------------AGAAGACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATCGCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT---------A---AGA-TTC--CTCG--CGAAAAGACTTATTAAAT--AA-A----A--TAC---A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--A--AATC-ATGTCTT--CAAAGTCGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATA-TATTTTCGGAGCTGTCGGTA--A--GTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTTTG-TC-TT-G---AAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATT-CAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAA---GATAAAT--TTGGTCTAAT---GCA-TT--TCTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAA-TCCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCAC-GAA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TCACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA---ATTCCTT--CACGTAAGGA---GT------GATTGAA-A----A--GAGAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTC-TTA-TT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTC-CAAGA-T-C-CCCTTT-TATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTT---TTGAAGCTTTTCAA----GGGA-TTCAGAAGAGG---A-AGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAA--G---AATAGTTGAT-TAAT---G---TTGCTCTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAA-AACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAA-GAA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TCTCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A---AAACTTT--CTTGTACAGAACGG--------AT--AA-AAATGA--TA----ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--G--AGATAATATCAT--TAATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT----------TTGTTTTGACCATTACACAACTT---GGA---GAAAT-GTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTT-CAAAA-TGC-CC-TTT-TATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTC-TTT-TTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATT---TTGTAATTTATCGA----GTGAATTC-GA--TGTTTGA-T-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAAT--GT--AAT-TTTGAT-TGAG---GGATTT--TCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAA-GAA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TCTCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T---ATACCTT--CACTTAAAGAACGGTTA----AAT--AA-A----ATTTA----A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTC--AGAT-ATATCATCCTCAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CA--A--CA-CC-ATTA-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATA-T-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CA-TTAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-GT-TT--ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TTGACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-A---
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC-------------------AG--G--AAGT-AACTTAA--TCAGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATT-TA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTAC-T--GT-TGA--AA-TATCCCCTTTCACAAAGTGATGAATA-ACTTTC-CAAAA-G-CTTC-GTT-TATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATC-TTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Atttacattaaagtaaggaattattaacatagactgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : ---------ACT--TA-AAAG--CTCAGAT-ATATCATCTTCAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATA-T-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-ATATCCATAAAA-C-T-TC-TTT-TGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTC-TTA--T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : AGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAA-TCCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAA-CAAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTGTTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAA-TCTGGA-A-ATTCACA-TTTAATTCAT---GATCTATTA----AAT--AACA----G--TA----C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTT-TGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTC-TTA--T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 55555555555555555555555555 1 333333 11 1 1 4444444 11 11 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 4444444444444 88888888888888888888888888888888888888888 2 1 11 222222 1111 11111 11 111111 333333333333333333 11111111 1111 11 11 11 22222 111111 22222 1111111 1 11 1111 1111 11 22222 111 11 111 11 11 55555555555555 11 111 11111 11 1111 111111111 2222222222 1111 22222 111111 11 7777777777777777777777777777 11 55555555555 11111 111 222 11 111 1 22222222 22222222222 2222 11 111 111 11 1111 4444444444 2222222 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 00000000000000000000000000 0 1 0 11 0 2 1 333 3 2 4 1 333333 33 0 0 1111111 33 22 11 00 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 0000000000000 888 77777777777777777777777777777777777777777 3 2 2 0 0 66 33 3 1 8 3 1 1 3 1 1 333333 3 6 1 1 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 1 6 3 44 99 000000000000000000 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 88 3 0 99 00 1 22222 222222 44444 5555555 1 0 11 1 2222 7777 6 8 11 33333 1 0 444 33 0 555 0 33 0 0 9 33 2 88888888888888 00 444 1 88 0 88888 00 1 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 0000000000000000000000000000 0 0 1 1 6 1 3 6 55 1 6 3 11111111111 1 11111 1 1 777 444 222 0 11 8 444 0 3 1 1 6 6 6 00000000 6 1 0 4 6 11111111111 1 99 666 6 6 0 44 0000 3 8 1 1 11 444 1 6 000 55 1 0000 6 1 2222222222 7 2 6 8888888 1 2 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . .......................... . . . .. . . . ... . . . . ...... .. . . ....... .. .. .. .. . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............. ... ......................................... . . . . . .. .. . . . . . . . . . ...... . . . . . ... . .... . . ..... . . . .. . ...... . . . . .. .. .................. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. . . .. .. . ..... ...... ..... ....... . . .. . .... .... . . .. ..... . . ... .. . ... . .. . . . .. . .............. .. ... . .. . ..... .. . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . . .. . . . ........... . ..... . . ... ... ... . .. . ... . . . . . . . ........ . . . . . ........... . .. ... . . . .. .... . . . . .. ... . . ... .. . .... . . .......... . . . ....... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 88888888888888888888888888 0 2 8 88 2 5 0 888 0 5 2 0 000000 88 0 0 8888888 88 00 22 55 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 7777777777777 333 77777777777777777777777777777777777777777 2 5 5 0 0 88 22 2 2 0 2 0 0 2 0 0 000000 8 2 4 0 8 000 0 0000 4 2 22222 4 4 0 33 5 000000 0 0 7 7 33 22 222222222222222222 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 33 7 3 22 33 0 88888 555555 33333 3333333 0 0 00 4 8888 0000 0 0 00 66666 0 8 888 88 2 000 2 88 2 2 8 88 5 00000000000000 88 888 0 88 8 00000 88 0 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 8888888888888888888888888888 7 3 0 0 7 0 7 7 88 0 0 8 00000000000 4 88888 0 0 222 000 666 8 00 0 222 8 6 0 4 0 7 7 55555555 7 0 7 2 7 77777777777 0 22 888 7 7 8 88 6666 8 0 4 0 00 000 0 0 222 88 0 8888 7 0 7777777777 8 5 7 2222222 0 5 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANA--TGT-AAT--TT-GAT-TAAN-G-AG-TT--TCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTTT--CTCGTACGGAACGA----TTAAATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANA--TG--AAT--TT-GAT-TAAN-G-A--TT--TCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACAAGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTTT--CTCGTACGGAACGG----TTAAATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGTCT-TTC----TCGT---AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATA--TATAAAT--TT-GAT-TAAGAG-AG-TC--CCTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACA-------------GAAGACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATCGCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT---------A---AGA-TTC--CTCG--CGAAAAGACTTATTAAATAA-AA--TAC-A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--AAATC-ATGTCTT-CA-AAGT-CGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATATATTTTCGGAGCTGTCGGTA--A--GTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTTTG-TC-TT-G---AAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAAGATA--AAT--TT-GGTCTAAT-GCA--TT--TCTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAA-TCCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCACG-AA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TCACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA---ATTCCTT--CACGTAAGGAGTGA----TTGAA-AA-GA--GAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTC-TTA-TT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTC-CAAGA-T-C-CCCTTT-TATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GGGA-TTCAGAAGAGG---AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACA--AG--AATAGTT-GAT-TAAT-G----TTGCTCTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAA-AACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TCTCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A---AAACTTT--CTTGTACAGAACGG----ATAAAAAT-GA--TA--ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--GAGATAATATCAT--T-AATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT---------TTGTTTTGACCATTACACAACTT---GGA---GAAA-TGTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTT-CAAAA-TGC-CC-TTT-TATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTC-TTT-TTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC-GA--TGTTTGAT-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAA--TGT-AAT--TTTGAT-TGAG-G-GATTT--TCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TCTCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T---ATACCTT--CACTTAAAGAACGG----TTAAATAA-AATTTA--A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTCAGAT-ATATCATCCT-CAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CA--A--CA-CC-ATTA-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CAT-TAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-G--TTT-ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TTGACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-A---
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--TAACT--TA--A---T-CAGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATTTA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTAC-T--GT-TGA--AA-TATCCCCTTTCACAAAGTGATGAATA-ACTTTC-CAAAA-G-CTTC-GTT-TATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATC-TTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Atttacattaaagtaaggaattattaacatagactgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : AGAT-ATATCAT-CTTCAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-ATATCCATAAAA-C-T-TC-TTT-TGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTC-TTA--T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : acttaaaagctcAGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAA-TCCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAAC-AAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTGTTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAA-TCTGGA-A-ATTCACA-TTTAATTCAT---GATCTA----TTAAATAACAG--TA--C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTT-TGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTC-TTA--T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 55555555555555555555555555 1 2222 1 1 222222 11 11 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 4444444444444 88888888888888888888888888888888888888888 2 1 11 222222 1111 11111 11 111111 33333333333333 11111111 1111 11 111 11 22222 111111 222222222222222 1111111111 1111 11 22222 111 11 111 11 11 55555555555555 11 111 11111 11 1111 111111111 2222222222 1111 22222 111111 11 7777777777777777777777777777 11 55555555555 11111 111 222 11 111 1 22222222 22222222222 2222 11 111 111 11 1111 4444444444 2222222 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 00000000000000000000000000 0 1 0 11 0 2 1 333 3 2 4 1 444 4444 0 0 666666 33 22 11 00 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 0000000000000 888 77777777777777777777777777777777777777777 3 2 2 0 0 66 33 3 1 8 3 1 1 3 1 1 333333 3 3 1 1 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 1 6 3 44 99 22222222222222 99 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 99 222 0 99 00 1 22222 222222 999999999999999 1 11 1111111111 4444 6 3 6 11 33333 1 0 444 33 0 555 0 33 0 0 9 33 2 88888888888888 00 444 1 88 0 88888 00 1 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 0000000000000000000000000000 0 0 1 1 6 1 3 6 55 1 6 3 11111111111 1 11111 1 1 777 444 222 0 11 8 444 0 3 1 1 6 6 6 00000000 6 1 0 4 6 11111111111 1 99 666 6 6 0 44 0000 3 8 1 1 11 444 1 6 000 55 1 0000 6 1 2222222222 7 2 6 8888888 1 2 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . .......................... . . . .. . . . ... . . . . ... .... . . ...... .. .. .. .. . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............. ... ......................................... . . . . . .. .. . . . . . . . . . ...... . . . . . ... . .... . . ..... . . . .. . ...... . . . . .. .. .............. .. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. ... . .. .. . ..... ...... ............... . .. .......... .... . . . .. ..... . . ... .. . ... . .. . . . .. . .............. .. ... . .. . ..... .. . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . . .. . . . ........... . ..... . . ... ... ... . .. . ... . . . . . . . ........ . . . . . ........... . .. ... . . . .. .... . . . . .. ... . . ... .. . .... . . .......... . . . ....... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 88888888888888888888888888 0 2 8 88 2 5 0 888 0 5 2 0 888 8888 0 0 888888 88 00 22 55 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 7777777777777 333 77777777777777777777777777777777777777777 2 5 5 0 0 88 22 2 2 0 2 0 0 2 0 0 000000 8 8 4 0 8 000 0 0000 4 2 22222 4 4 0 33 5 000000 0 0 7 7 33 22 55555555555555 22 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 22 888 3 22 33 0 88888 555555 777777777777777 0 33 8888888888 2222 7 5 7 00 66666 0 8 888 88 2 000 2 88 2 2 8 88 5 00000000000000 88 888 0 88 8 00000 88 0 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 8888888888888888888888888888 7 3 0 0 7 0 7 7 88 0 0 8 00000000000 4 88888 0 0 222 000 666 8 00 0 222 8 6 0 4 0 7 7 55555555 7 0 7 2 7 77777777777 0 22 888 7 7 8 88 6666 8 0 4 0 00 000 0 0 222 88 0 8888 7 0 7777777777 8 5 7 2222222 0 5 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAAT--TT-GAT-TAAN-G-ANTT--TCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAA-GAA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TC--GCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTT--TCNCGTAAGGAACGA----TTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANATGTAA-T--TT-GAT-TAAN-G-AGTT--TCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAA-GAA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TC--GCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A---ANACTT--TCTCGTACGGAACGA----TTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGTCT-TTC----TCGT---AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATAAAT--TT-GAT-TAAGAG-AGTC--CCTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACA-------------GAAGACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATC--GCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT---------A---AGA-TT--CCTCG--CGAAAAGACTTATTAA-ATAA-AA--TAC-A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--AAATC-ATGTCTT-CA-AAGT-CGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATATATTTTCGGAGCTGTCGGTA--A--GTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTTTG-TC-TT-G---AAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAAGATAAAT--TT-GGTCTAAT-G-CATT--TCTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAA-TCCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCAC-GAA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TC--ACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA---ATTCCT--TCACGTAAGGAGTGA----TTGA-A-AA-GA--GAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTC-TTA-TT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTC-CAAGA-T-C-CCCTTT-TATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GGGA-TTCAGAAGAGG---AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAAG-AA-TAGTT-GAT-TAAT-G---TTGCTCTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAA-AACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAA-GAA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TC--TCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A---AAACTT--TCTTGTACAGAACGG----ATAA-AAAT-GA--TA--ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--GAGATAATATCAT--T-AATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT---------TTGTTTTGACCATTACACAACTT---GGA---GAAA-TGTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTT-CAAAA-TGC-CC-TTT-TATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTC-TTT-TTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC-GA--TGTTTGAT-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAATGTAA-T--TTTGAT-TGAG-GGATTT--TCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAA-GAA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TC--TCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T---ATACCT--TCACTTAAAGAACGG----TTAA-ATAA-AATTTA--A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTCAGAT-ATATCATCCT-CAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CA--A--CA-CC-ATTA-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CA-TTAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-GT-TT--ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TT--GACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-AT--TTACAT--TAAAGTAAGGAATTA----TTAACATAG-A
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--TAACT--TA--A---T-CAGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATTTA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTAC-T--GT-TGA--AA-TATCCCCTTTCACAAAGTGATGAATA-ACTTTC-CAAAA-G-CTTC-GTT-TATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATC-TTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Actgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : AGAT-ATATCAT-CTTCAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-ATATCCATAAAA-C-T-TC-TTT-TGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTC-TTA--T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : acttaaaagctcAGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAA-TCCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAA-CAAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTG--TTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAAT-CTGGA-A-ATTCACATTTAAT-TCAT---GATCTA----TTAA-ATAACAG--TA--C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTT-TGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTC-TTA--T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 55555555555555555555555555 1 1 111111 11 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 4444444444444 88888888888888888888888888888888888888888 2 1 11 222222 1111 11111 11 111111 333333333333333333 11111111 1111 11 111 11 22222 111111 2222222222222222 11 22222 111 11 111 11 11 55555555555555 11 111 11111 11 1111 111111111 2222222222 1111 22222 111111 11 7777777777777777777777777777 11 55555555555 11111 111 222 11 111 1 22222222 22222222222 2222 11 111 111 11 1111 4444444444 2222222 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 00000000000000000000000000 0 1 0 11 0 2 1 333 3 2 4 1 1 0 555555 22 11 00 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 0000000000000 888 77777777777777777777777777777777777777777 3 2 2 0 0 66 33 3 1 8 3 1 1 3 1 1 333333 3 3 1 1 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 1 6 3 44 99 000000000000000000 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 99 222 0 99 00 1 22222 222222 5555555555555555 4 6 22 2 1 2 6 3 6 11 33333 1 0 444 33 0 555 0 33 0 0 9 33 2 88888888888888 00 444 1 88 0 88888 00 1 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 0000000000000000000000000000 0 0 1 1 6 1 3 6 55 1 6 3 11111111111 1 11111 1 1 777 444 222 0 11 8 444 0 3 1 1 6 6 6 00000000 6 1 0 4 6 11111111111 1 99 666 6 6 0 44 0000 3 8 1 1 11 444 1 6 000 55 1 0000 6 1 2222222222 7 2 6 8888888 1 2 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . .......................... . . . .. . . . ... . . . . . . ...... .. .. .. . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............. ... ......................................... . . . . . .. .. . . . . . . . . . ...... . . . . . ... . .... . . ..... . . . .. . ...... . . . . .. .. .................. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. ... . .. .. . ..... ...... ................ . . .. . . . . . . .. ..... . . ... .. . ... . .. . . . .. . .............. .. ... . .. . ..... .. . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . . .. . . . ........... . ..... . . ... ... ... . .. . ... . . . . . . . ........ . . . . . ........... . .. ... . . . .. .... . . . . .. ... . . ... .. . .... . . .......... . . . ....... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 88888888888888888888888888 0 2 8 88 2 5 0 888 0 5 2 0 0 0 555555 00 22 55 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 7777777777777 333 77777777777777777777777777777777777777777 2 5 5 0 0 88 22 2 2 0 2 0 0 2 0 0 000000 8 8 4 0 8 000 0 0000 4 2 22222 4 4 0 33 5 000000 0 0 7 7 33 22 222222222222222222 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 22 888 3 22 33 0 88888 555555 3333333333333333 7 7 00 2 8 5 7 5 7 00 66666 0 8 888 88 2 000 2 88 2 2 8 88 5 00000000000000 88 888 0 88 8 00000 88 0 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 8888888888888888888888888888 7 3 0 0 7 0 7 7 88 0 0 8 00000000000 4 88888 0 0 222 000 666 8 00 0 222 8 6 0 4 0 7 7 55555555 7 0 7 2 7 77777777777 0 22 888 7 7 8 88 6666 8 0 4 0 00 000 0 0 222 88 0 8888 7 0 7777777777 8 5 7 2222222 0 5 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-G-NNTCTCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TC--GCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AT-ACNT-TCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-G-ANTTTCTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TC--GCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AN-ACTT-TCNCGTAAGGAACGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGTCT-TTC----TCGT---AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATAAATTTGAT-TAAGAG-AGTCCCTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACA-------------GAAGACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATC--GCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT---------A-AG-ATTCCTCGCGAAAAGACTTATTAA-ATAA-AA--TAC-A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--AAATC-ATGTCTT-CA-AAGT-CGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATATATTTTCGGAGCTGTCGGTA--A--GTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTTTG-TC-TT-G---AAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAAGATAAATTTGGTCTAAT-G-CATTTCTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAA-TCCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCACG-AA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TC--ACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA-AT-TCCT-TCACGTAAGGAGTGATTGA-A-AA-GA--GAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTC-TTA-TT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTC-CAAGA-T-C-CCCTTT-TATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GGGA-TTCAGAAGAGG---AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAAGAATAGTTGAT-TAAT-G-TTGCTCTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAA-AACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TC--TCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A-AA-ACTT-TCTTGTACAGAACGGATAA-AAAT-GA--TA--ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--GAGATAATATCAT--T-AATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT---------TTGTTTTGACCATTACACAACTT---GGA---GAAA-TGTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTT-CAAAA-TGC-CC-TTT-TATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTC-TTT-TTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC-GA--TGTTTGAT-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAATGTAATTTTGAT-TGAG-GGATTTTCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TC--TCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T-AT-ACCT-TCACTTAAAGAACGGTTAA-ATAA-AATTTA--A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTCAGAT-ATATCATCCT-CAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CA--A--CA-CC-ATTA-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CAT-TAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-G--TTT-ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TT--GACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-ATTT-ACAT-TAAAGTAAGGAATTATTAACATAG-A
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--TAACT--TA--A---T-CAGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATTTA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTAC-T--GT-TGA--AA-TATCCCCTTTCACAAAGTGATGAATA-ACTTTC-CAAAA-G-CTTC-GTT-TATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATC-TTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Actgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : AGAT-ATATCAT-CTTCAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-ATATCCATAAAA-C-T-TC-TTT-TGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTC-TTA--T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : acttaaaagctcAGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAA-TCCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAAC-AAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTG--TTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAAT-CTGGA-A-A-TTCACAT-TTAATTCATGATCTATTAA-ATAACAG--TA--C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTT-TGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTC-TTA--T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 55555555555555555555555555 1 1 11 1 11 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 4444444444444 88888888888888888888888888888888888888888 2 1 11 222222 1111 11111 11 111111 333333333333333333 11111111 1111 11 11 11 22222 111111 22222 111111 11 22222 111 11 111 11 11 55555555555555 11 111 11111 11 1111 111111111 2222222222 1111 22222 111111 11 7777777777777777777777777777 11 55555555555 11111 111 222 11 111 1 22222222 22222222222 2222 11 111 111 11 1111 4444444444 2222222 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 00000000000000000000000000 0 1 0 11 0 2 1 333 3 2 4 1 1 0 11 22 0 22 11 00 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 0000000000000 888 77777777777777777777777777777777777777777 3 2 2 0 0 66 33 3 1 8 3 1 1 3 1 1 333333 3 3 1 1 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 1 6 3 44 99 000000000000000000 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 88 3 0 99 00 1 22222 222222 44444 6 222222 1 1 0 1 2 6 3 6 11 33333 1 0 444 33 0 555 0 33 0 0 9 33 2 88888888888888 00 444 1 88 0 88888 00 1 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 0000000000000000000000000000 0 0 1 1 6 1 3 6 55 1 6 3 11111111111 1 11111 1 1 777 444 222 0 11 8 444 0 3 1 1 6 6 6 00000000 6 1 0 4 6 11111111111 1 99 666 6 6 0 44 0000 3 8 1 1 11 444 1 6 000 55 1 0000 6 1 2222222222 7 2 6 8888888 1 2 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . .......................... . . . .. . . . ... . . . . . . .. .. . .. .. .. . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............. ... ......................................... . . . . . .. .. . . . . . . . . . ...... . . . . . ... . .... . . ..... . . . .. . ...... . . . . .. .. .................. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. . . .. .. . ..... ...... ..... . ...... . . . . . . . . .. ..... . . ... .. . ... . .. . . . .. . .............. .. ... . .. . ..... .. . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . . .. . . . ........... . ..... . . ... ... ... . .. . ... . . . . . . . ........ . . . . . ........... . .. ... . . . .. .... . . . . .. ... . . ... .. . .... . . .......... . . . ....... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 88888888888888888888888888 0 2 8 88 2 5 0 888 0 5 2 0 0 0 00 00 0 00 22 55 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 7777777777777 333 77777777777777777777777777777777777777777 2 5 5 0 0 88 22 2 2 0 2 0 0 2 0 0 000000 8 8 4 0 8 000 0 0000 4 2 22222 4 4 0 33 5 000000 0 0 7 7 33 22 222222222222222222 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 33 7 3 22 33 0 88888 555555 33333 7 888888 0 0 3 0 5 7 5 7 00 66666 0 8 888 88 2 000 2 88 2 2 8 88 5 00000000000000 88 888 0 88 8 00000 88 0 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 8888888888888888888888888888 7 3 0 0 7 0 7 7 88 0 0 8 00000000000 4 88888 0 0 222 000 666 8 00 0 222 8 6 0 4 0 7 7 55555555 7 0 7 2 7 77777777777 0 22 888 7 7 8 88 6666 8 0 4 0 00 000 0 0 222 88 0 8888 7 0 7777777777 8 5 7 2222222 0 5 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AT-ACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNNTCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AT-ACNTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGTCT-TTC----TCGT---AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATAAATTTGAT-TAAGAGAGTCC-CTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACA-------------GAAGACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATCGCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT-----A-A-G-AT-TCCT-CGCGAAAAGACTTATTAA-ATAA-AA--TAC-A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--AAATC-ATGTCTT-CA-AAGT-CGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATATATTTTCGGAGCTGTCGGTA--A--GTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTTTG-TC-TT-G---AAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAAGATAAATTTGGTCTAAT-GCATTT-CTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAA-TCCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCACG-AA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TCACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA-AT-TCCTTCACGTAAGGAGTGATTGA-A-AA-GA--GAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTC-TTA-TT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTC-CAAGA-T-C-CCCTTT-TATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GGGA-TTCAGAAGAGG---AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAAGAATAGTTGAT-TAAT-GTTGCT-CTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAA-AACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TCTCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A-AA-ACTTTCTTGTACAGAACGGATAA-AAAT-GA--TA--ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--GAGATAATATCAT--T-AATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT---------TTGTTTTGACCATTACACAACTT---GGA---GAAA-TGTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTT-CAAAA-TGC-CC-TTT-TATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTC-TTT-TTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC-GA--TGTTTGAT-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAATGTAATTTTGAT-TGAG-GGATTTTCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TCTCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T-AT-ACCTTCACTTAAAGAACGGTTAA-ATAA-AATTTA--A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTCAGAT-ATATCATCCT-CAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CA--A--CA-CC-ATTA-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CAT-TAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-G--TTT-ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TTGACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-ATTT-ACATTAAAGTAAGGAATTATTAACATAG-A
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--TAACT--TA--A---T-CAGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATTTA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTAC-T--GT-TGA--AA-TATCCCCTTTCACAAAGTGATGAATA-ACTTTC-CAAAA-G-CTTC-GTT-TATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATC-TTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Actgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : AGAT-ATATCAT-CTTCAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-ATATCCATAAAA-C-T-TC-TTT-TGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTC-TTA--T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : acttaaaagctcAGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAA-TCCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAAC-AAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTGTTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAA-TCTGGA-A-A-TTCACATTTAATTCATGATCTATTAA-ATAACAG--TA--C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTT-TGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTC-TTA--T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 55555555555555555555555555 1 1 11 1 11 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 4444444444444 88888888888888888888888888888888888888888 2 1 11 222222 1111 11111 11 111111 333333333333333333 11111111 1111 11 11 11 22222 111111 22222 111111 11 22222 111 11 111 11 11 55555555555555 11 111 11111 11 1111 111111111 2222222222 1111 22222 111111 11 7777777777777777777777777777 11 55555555555 11111 111 222 11 111 1 22222222 22222222222 2222 11 111 111 11 1111 4444444444 2222222 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 00000000000000000000000000 0 1 0 11 0 2 1 333 3 2 4 1 1 0 11 22 0 22 11 00 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 0000000000000 888 77777777777777777777777777777777777777777 3 2 2 0 0 66 33 3 1 8 3 1 1 3 1 1 333333 3 3 1 1 3 333 4 3333 1 3 44444 6 1 1 88 1 777777 6 1 6 3 44 99 000000000000000000 77 33333333 99 888 3 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 88 3 0 99 00 1 22222 222222 44444 6 222222 1 1 0 1 2 6 3 6 11 33333 1 0 444 33 0 555 0 33 0 0 9 33 2 88888888888888 00 444 1 88 0 88888 00 1 3333 99 6 999999999 6 7777777777 4444 99 88888 999999 44 0000000000000000000000000000 0 0 1 1 6 1 3 6 55 1 6 3 11111111111 1 11111 1 1 777 444 222 0 11 8 444 0 3 1 1 6 6 6 00000000 6 1 0 4 6 11111111111 1 99 666 6 6 0 44 0000 3 8 1 1 11 444 1 6 000 55 1 0000 6 1 2222222222 7 2 6 8888888 1 2 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . .......................... . . . .. . . . ... . . . . . . .. .. . .. .. .. . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............. ... ......................................... . . . . . .. .. . . . . . . . . . ...... . . . . . ... . .... . . ..... . . . .. . ...... . . . . .. .. .................. .. ........ .. ... . . . . . . . . .... . . . .. .. . .. .. . . .. .. . ..... ...... ..... . ...... . . . . . . . . .. ..... . . ... .. . ... . .. . . . .. . .............. .. ... . .. . ..... .. . .... .. . ......... . .......... .... .. ..... ...... .. ............................ . . . . . . . . .. . . . ........... . ..... . . ... ... ... . .. . ... . . . . . . . ........ . . . . . ........... . .. ... . . . .. .... . . . . .. ... . . ... .. . .... . . .......... . . . ....... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 88888888888888888888888888 0 2 8 88 2 5 0 888 0 5 2 0 0 0 00 22 0 00 22 55 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 7777777777777 333 77777777777777777777777777777777777777777 2 5 5 0 0 88 22 2 2 0 2 0 0 2 0 0 000000 8 8 4 0 8 000 0 0000 4 2 22222 4 4 0 33 5 000000 0 0 7 7 33 22 222222222222222222 00 22222222 22 333 5 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 33 7 3 22 33 0 88888 555555 33333 7 888888 0 0 3 0 5 7 5 7 00 66666 0 8 888 88 2 000 2 88 2 2 8 88 5 00000000000000 88 888 0 88 8 00000 88 0 4444 22 7 333333333 7 3333333333 2222 22 22222 222222 00 8888888888888888888888888888 7 3 0 0 7 0 7 7 88 0 0 8 00000000000 4 88888 0 0 222 000 666 8 00 0 222 8 6 0 4 0 7 7 55555555 7 0 7 2 7 77777777777 0 22 888 7 7 8 88 6666 8 0 4 0 00 000 0 0 222 88 0 8888 7 0 7777777777 8 5 7 2222222 0 5 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AT-ACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AT-ACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGTCT-TTC----TCGT---AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATAAATTTGAT-TAAGAGAGTCC-CTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----ACCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-ATTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TCACA-------------GAAGACCAT-----------------ACAAGTGT-------TAAGTTTAAAGTCAGTTG--AATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--TGGA-A--TG--ATTAATTA------------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAAT---ACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATCGCCTTTCTTATAAAGGG--GA--TAAC--A--AG---TG-----CATGAAT-----A-A-G-AT-TCCT-CGCGAAAAGACTTATTAA-ATAA-AA--TAC-A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACAG-CCTTATTAAC---------ACCTAAA-CAAG--AAATC-ATGTCTT-CA-AAGT-CGTTCT--TTAATA--T-------A----GTTA-T---GTCGTTATTTTTTCTGTTTGTCCGTATGCTT-GGT--TCTGGT-AGG-----------GTTGACCC-TC-T--A-TCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATATATTTTCGGAGCTGTCGGTA--A--GTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTC-CAGTA-T-T-GA-TTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG-TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATTTTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTTTG-TC-TT-G---AAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAAGATAAATTTGGTCTAAT-GCATTT-CTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCAC-CAGGAACAAA-TCCAGATTGCATTT--T-TGCTAG--T--ATA--TC--ATTG-TCACG-AA-AGAAGATGAATACATGT-T-T--AAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TCACCACCTTTGAATATCGTACA-GACAT--T--AG--CTTCCTTCCATATATTA-GGA-ACA-AT-TCCTTCACGTAAGGAGTGATTGA-A-AA-GA--GAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTCACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTC-TTA-TT-TTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|13 : AATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : A--TGAA----A----ACTA-TCAATTCG--ATTTT----AT--GTTCT-AAGACTGAGT--TCAGG--AAG----------GATTA--CA-TTTG--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTC-CAAGA-T-C-CCCTTT-TATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GGGA-TTCAGAAGAGG---AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAAGAATAGTTGAT-TAAT-GTTGCT-CTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGACAACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GTAATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGA---CTAATTGATACGTTGT--ACTGTGGC-CAGGTAAAAA-AACAGACTGAAATT--TATAC-AA--T--A-A--TTGAATTG-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCACA---ACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TCTCCCTTTTTGAAGATGG--GA-GTAAT--TTGAG--CTATCTTCCATGAGTTTTGGA-A-A-AA-ACTTTCTTGTACAGAACGGATAA-AAAT-GA--TA--ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------ATT--AAGTGAG--GAGATAATATCAT--T-AATTTCATCTTGAGTAACA--TCAA----A----ACTA-TCAAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGG--AAG----------CATTA--CATTT-G--AGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT---------TTGTTTTGACCATTACACAACTT---GGA---GAAA-TGTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTT-CAAAA-TGC-CC-TTT-TATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTTA-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATCA-TTTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTC-TTT-TTCGC-GACA---TT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC-GA--TGTTTGAT-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAATGTAATTTTGAT-TGAG-GGATTTTCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTACCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTATC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTA---TAAATTGATAGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAA-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGAC---ACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TCTCCCTTTTTAGAATTGG--GA-GTTACATT--TG--CAATCTTCCACAAA-TCGGGATA-T-AT-ACCTTCACTTAAAGAACGGTTAA-ATAA-AATTTA--A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTACT--AA-TAAGTTCAGAT-ATATCATCCT-CAGTT-ATTAT--AAAATG--TGAAAGGGA----ATTA-T-AAG------TTTT----GT--AT-----AAAAT-A----TCAGGTAAAA----------CA--A--CA-CC-ATTA-TCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---ATT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTT---TGAGTTGGTAAACTGTCGAATGT--C-CAT-TAGAAAGTCCTGATAAAAATT--TATAA-AAATT--A-G--TTT-ATTT-TCAATCAG-A-AAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAAC---ACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TTGACCTTTCTTAAGATGA--GACATAACAGT--AG--TTGACTTCCATGA---CTGGA-A-ATTT-ACATTAAAGTAAGGAATTATTAACATAG-A
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC--------------AG-GAAG--TAACT--TA--A---T-CAGTTCATTTT--CTAATATTTCAA----A----ATCAGT-AAGTTT--ATTAT----GG--GTT-TTGAAAAC-ACTACTTA-GT-AAGTTGGTGATAATGTTC--CA-TT----A-TCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATTTA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTAC-T--GT-TGA--AA-TATCCCCTTTCACAAAGTGATGAATA-ACTTTC-CAAAA-G-CTTC-GTT-TATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTTA-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATCG-TTTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATC-TTAGTT-T---ATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Actgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : AGAT-ATATCAT-CTTCAGTT-ATTAT--AAAATG--TGAA----AGGGAATTA-T----TTG---TTTT----GT--AT-----AAAAT-A----TCAGGT-AAA----------CA--A--CA-CC-AGTA-TCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATAT-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-ATATCCATAAAA-C-T-TC-TTT-TGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA-TATTAT---GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TATTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTC-TTA--T-AC-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : acttaaaagctcAGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTA---AAGGTTGGTAAACCGTGGAATGTCCT-CTGG--GAAA-TCCAGATTGTAATT--TATA--AA--T--G-AGGTT--ATTA-TCAAC-AAGA-AAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAAT---ACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTGTTTTACCTTTCTTGAAAAGTG--GA-ATTAC--T--AGGACTGATTTCCATAAA-TCTGGA-A-A-TTCACATTTAATTCATGATCTATTAA-ATAACAG--TA--C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTC-CAAAAAT-T-TG-TTT-TGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCAT---ATTTTTATGGTTATTAACTTTATTTC--GAG---TATTTTTAT--TTATCCCAGTCTTTTTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTC-TTA--T-AT-GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
blockSeqs : C A C TTC T C CTAAC G CGGGTGGTA T TT G TTG A TCATTTCAGAATTATATT . T TT A T ATA T G A A G C T CA T TA AA TG C T CCT CAATTATTATTAAT AT A A A G GTCA . A CTT GT G T A GTA A T CG AAAAACAAATGCGGATGAAGATTTTCA T G G C ATTT A T TC AG GG CG CA CTCTG A TTT T A T T ATATGACTTACC T GT A GT A CAAG T C GA A A T G T G G G TAC T . . TC ATAT GAGTGAATGACA TTG TGTTAAGTGATCAGAAATTCTAATTCTAAAAGTTGA A C G A . CG TA T C G G T T T G G CATGTA A T A A T ATT T GCGT A G CT A G G CG C GACTTT A C G A GC . AAAATTAGTTT G CGAAAG GA ATG T A T T A A C C TTGT T A T TG GA A AC TT A TA CA C TTG GACTGA GTTTT T CAAT C C G G C A C TT ACAT G TTC . ACC CC T . G TGGTTAAGTACT GT TTC A AA TCCT TC T GAGT TT G AGGGA G CAATTCGA . . TCTTA ACTAC TA TTGGTGATAATGTTCCATTA C G . C T G TA G T A TT T CCATT C A AAA . AAT . . AGT T A G T . A TCCCC . A C . TTTAAAGTAT T GA AT G A AT GTTT T T T A . TAT T A AGA AC T TTAT . T TTTAGAT T C . TTTTT A G CT GA TCT T A TCTAA CCGT
blockSeqs : T G G C C G CTAA . CTTGTAAGT A GA T . A GGGATTCAGAAGAGGAAG . A TA C G ATT T G T C A . T TT . TA GG AA C A TTG CAATAACCTTA AT G T A T TTTT . T TTA AT T T . TA T T T TGTTATATAAGATAAGTAATTGTAAT T . C . GTTA C C AA . GA CT AG AAAA A . T T A . CACTAAGAAG A . . AA T CAGA A A G T C A T A C T T TCT G . . TT TA CTGAAAAACT AGA TAATAAATACTTTGATAC A C G T . CA A T T . G G T T T T . A T A T T GTT A AGGT G A TA A G T GG C CACCA T A . A GA . CTAGTATATC G ATCAGA . T T A A T A G T T A A T G A TA C TT . T . G A ATT CTTC ATTA . ATTT T T A G . T . . ACT T C . T . A . G ATT T G A A TCTT TC A AA . C AGGGA . CAAGTCGA . . TCTA GAGT T GATTACATTTGAG C G . T G . G A T G AC A ATA A C AAC . AA . . CGA C G A A . . TGCCC . A C . GCTAAAT T . A . . TG ATA T . T A . . T A TGC TT A A . T TTTTGA T C . TTCGC C G GA . TTA T T TA CATA
blockSeqs : A GT A . G GTGAATTCGATGTTTGAT . A GA A A . . . C A T . G GA . CG GT . . . . GTTTTT . A C . A ATCG . T . A T A . . G T AGTA T . . T . . ACTGAG A . . AA T CATG G A T A A G A T T T . AGA A . . . . . . . . A . T . A A T G T T . A A T T C GGA C ATCC A T TG G A A . G GGCCA C A . T GG . CAATAATTGA A ACAAGA . T T A A G A C G T C T A A A CA T AC . T . G T AGT CTAT ATCG . ATTC C C A G . T . . CT T T . A . A . G . G T C A TT T T CT . G A . AAGTTTA . . TTTG AGT T CATTACATTTGAG G T . A G . . T T A . G TTT T A AAA . TT . . CAA T C G A . . GCTTC . C T . GCTATAT G . A . . TG A T . A T . . T A AAA A A A . T AATAGA A C . GTTT T G TC . TT T G G TTAT
blockSeqs : A . . CT A AATT A A G T G G T A C . . C G G C T . G A T A T ATT T TGCC T G AA G A T . A CCTCT T G . T AA . AATCAAATT T AGAAA . T T T G C C T G A C T A T C TT C TC . G . G A T CAAT ATCT . AAA A A A T . T . . A A . A . T T A AA . C A . AAG . . . A . CAACACCATTA G A . T A . . A . . . A ATA A C . . TA . . A . C A A . . ATTTG . T T . TTAAGCG A . G . . . . . . A T . . A . ATC G C A . A AATAGA A A . TAC C . TC . TT A A T TTAT
blockSeqs : A . . T A T G T A C A C . A CCA . G . A GT . AATGAGGTT A AGAAA . G . T C T C T A G T G T T C . . GT . A . A T T TTGA CT . TAT A A T T . . . . G A . TTG . . . A . CAACACCAGTA G T . A A . . . . CTTC . T T . . A . A . . T C A . A TCTT . . . TAT C . . . . A T A TT
blockSeqs : A T A
blockSeqCons : GTT ANNC CG*** CGCCA* GN ** CAATAGATT********* G* ANAAGA** NC ** G* ATT** CTAT** ATCN* ATTT** TT*** T* AAGTCGA*** **** ** TCTG* AT**** CANTACCATTTGAG************** C********** ATA** *** ** CGA NCCCC*** A** G*** ** AGN N* A*** TNC**** TC* TT**
originalCons : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTA---TNAGTTGGTAAGTNGT--AATGTGGC-CAGGTANAAA-TCCAGATTGNAATT--TATAC-AA--T--A-A--TT--ATTA-TCAAG-AA-A-AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GA-GTNAC--T--AG--CTGNCTTCCATGAATTCTGGA-A-A-AT-ACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCAT-CT-CAGTTCATTNT--NTAATA--TGAA----A----ATTA-T-AAGTCG--ATTTT----GT--GTTCTTAAAAAT-AGT--TCAGGT-AAG----------CGTTA--CA-TC-G--A-TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATA---------CTGTCGTTA--ATNANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAA-T-C-TC-TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG-TNTTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCATTTTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTA-TT-NC-GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
finalCons : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-ACCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-ATT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTACG---AGTTGGTAAGTNGT--AATGTCGCCA-GGTANAAA-TCCAGATTGNAATT--TATACAATAGATT---------ATTG-TCAANAAGA--AAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAAT---ACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGG--GAG-TNACATT--AGCTAT--CTTCCATGAATCN-GGA-AATTT--ACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------ACT--AA-TAAG--NAGAT-ATATCATT---CAGTT-ATTNT--NTAATA--TGAA----A----ATTA-TAAGTCGA---TTTT----GT--GTTCTG-AAAATAT----TCAGGT-AAGCANTACCATTTGAG--------------TCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATATC----------TGTCGTTAATA--ANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTC-CAAAANCCCC---TTT-TATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACTA--AA-AAAT-GTTCTTTNGCATG---TTTTTA-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTCN-TTTGATTTGCCCGA---TTTT-ACNGC-ATNN--T--TTTATGTCTATCTC-TTATNC----GACAAAGTTTC-CT--TAATTTT--GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG
Alignments
lowQualScore : 3333 11111 1 6666666666666666 111 55555555555555555555555555 1 1 11 1 11 444444444444444 11111 1 1 1111 33333 666666666666666666666666666666666666 1 11 11 11111 111 1 3333333333333333 11 1 3333333 11 2222 333333333333333 88888888888888888888888888888888888888888 111 1 11 222222 1111 11 11 11 222222 222222222222222 1 1111 1111 11 11 11 11 222222 11111 1 11 22222 111 11 111 11 11 777777777777777777777777777 22222 1 111 3333333333333333333333333333333333 5555555555555555555555555555555555555555555555555555555 11 55555555555 111 111 222 111 111 1 22222222222 1111 1111 11 111 111 1111 1111 4444444444 111111 111 1111 22222 11111
lowQualScore : 1 1 1 2222 1 1 77777 3 0 4444444444444444 0 1 22 4 777 0 4 00000000000000000000000000 0 1 0 11 0 2 1 333 3 2 4 1 1 0 11 22 0 22 11 00 2 4 444 0 222222222222222 0 44 1 1 9 4 44444 0 1 888 44 1 1 0 3 3333 1 7 11111 222222222222222222222222222222222222 7 3 1 0 6 1111 1 1 22 33 11 66 88 33333 1 777 3 1 9 0 2222222222222222 6 11 8 22 1 8888 3 1 77 1 2 1 1 1 1 1 9 333 1 0 2222222 11 5555 111111111111111 888 77777777777777777777777777777777777777777 3 2 2 111 0 66 33 3 1 8 3 1 1 3 1 1 333333 6 8 1 1 3 333 4 3333 1 3 66 11 1 1 88 1 111111 6 1 6 3 777 99 000000000000000 2 1 7 99 4444 1 1 5 1 1 1 1 2222 1 1 1 88 00 5 44 88 3 0 44 1 00 000000 00000 99 4 1 1 0 1 2 6 3 6 11 33333 1 0 444 33 0 555 0 33 0 0 9 11 1 222222222222222222222222222 88 22222 99 3 1 000 2222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111 0 0 1 1 6 1 3 6 55 1 6 3 8 66666666666 1 777 1 1 1 777 444 222 111 8 444 0 3 1 1 6 6 1 6 4444 1 0 4 6 11111111111 1 99 666 6 6 0 44 5555 1 5555 1 1 11 444 1 0 000 8888 1 0000 6 1 2222222222 7 2 3 222222 0 1 666 99 1111 1 1 99999 00000
lowQualScore : . . . .... . . ..... . . ................ . . .. . ... . . .......................... . . . .. . . . ... . . . . . . .. .. . .. .. .. . . ... . ............... . .. . . . . ..... . . ... .. . . . . .... . . ..... .................................... . . . . . .... . . .. .. .. .. .. ..... . ... . . . . ................ . .. . .. . .... . . .. . . . . . . . . ... . . ....... .. .... ............... ... ......................................... . . . ... . .. .. . . . . . . . . . ...... . . . . . ... . .... . . .. .. . . .. . ...... . . . . ... .. ............... . . . .. .... . . . . . . . .... . . . .. .. . .. .. . . .. . .. ...... ..... .. . . . . . . . . . .. ..... . . ... .. . ... . .. . . . .. . ........................... .. ..... .. . . ... .................................. ....................................................... . . . . . . . . .. . . . . ........... . ... . . . ... ... ... ... . ... . . . . . . . . .... . . . . ........... . .. ... . . . .. .... . .... . . .. ... . . ... .... . .... . . .......... . . . ...... . . ... .. .... . . ..... .....
lowQualScore : 0 0 0 3333 0 0 00000 3 7 0000000000000000 7 0 00 2 555 2 2 88888888888888888888888888 0 2 8 88 2 5 0 888 0 5 2 0 0 0 00 22 0 00 22 55 5 5 000 8 888888888888888 2 00 2 0 8 2 22222 0 0 000 55 0 0 2 3 7777 0 3 33333 333333333333333333333333333333333333 3 3 0 7 7 3333 0 0 00 88 00 88 22 88888 2 555 2 0 8 0 2222222222222222 0 00 0 44 0 3333 7 0 77 0 2 0 0 0 0 0 2 000 2 0 5555555 00 0000 777777777777777 333 77777777777777777777777777777777777777777 2 5 5 000 0 88 22 2 2 0 2 0 0 2 0 0 000000 0 8 4 0 8 000 0 0000 4 2 00 00 4 0 33 5 222222 0 0 7 7 888 22 333333333333333 2 0 7 22 0000 0 0 7 0 0 0 0 0000 0 0 0 22 88 2 77 33 7 3 55 0 77 000000 33333 22 2 0 0 3 0 5 7 5 7 00 66666 0 8 888 88 2 000 2 88 2 2 8 00 4 444444444444444444444444444 33 00000 22 3 0 222 2222222222222222222222222222222222 8888888888888888888888888888888888888888888888888888888 7 3 0 0 7 0 7 7 88 0 0 8 0 22222222222 4 000 4 0 0 222 000 666 888 0 222 8 6 0 4 0 7 7 7 8888 0 7 2 7 77777777777 0 22 888 7 7 8 88 4444 0 2222 4 0 00 000 0 8 222 8888 0 8888 7 0 7777777777 8 5 5 777777 3 0 000 22 5555 0 0 11111 33333
consensus : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-A-CCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-A-TT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTATAAGTTGGT--AAGTNGT--AATGTCGCCA-GGTANAAA-TCCAGATTGNAATT--TATAC-AA--T-AGATT--ATTATCAANAAGAAAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAA---TACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGGGA-GTNACATTAG--CTGNCTTCCATGAA-TCTGGA--AATT-ACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------A---CC--AA-TAAG--NAGAT-ATATCA-T--TC--AGTT-ATTNT--NTAATATG--AA----A----ATT--A-T-AAGTCG--A--TTTTGTGTTC-TGAAAA---TA-------TTCAGGT-AAGC-------ANTA--CCATTT--ATCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATA-TA---------CTGTCGTTA--ATAANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTCCA-AAANCTTCTTTTATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG---TTTTT--A-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTC-NT-TTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTCTTATNC--GACGAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
Reference ( family-55 ) : TTTGATNTTTTCTTCTTTNTGNAAGAGAT-C-CCANCCACTNTCTTTATATAATTTTGCTAA-GAA-ACGGAT-TTG--CNNGT-G-TGCCGGTAACTATNCNNGCGGCTTCATTTTG---AAGTTTTTCGA----GCGN-TTCAGAATCGT---AN-CAG-TACAACCGTCCCATACTATNGAGGCGTATTCNAGAATTGGTCGAATATACGANANGTAAATTTGAT-TAAN-GNATCT-CTACTAAGNGTAAATTTCANTTTTCTCATTATACCAA-A-ATT-TTA-TGAGGCAGATTTTAAAATNTTATCGATATG-GTCGGT-CCATTTNCCATTTTTACTNAATGTNACNCCCAGATGTTTATGAT-TTT-TA-CAAATNTTATTTCAG---TGTTTTTAAACG----A--TAAGTG-CGGAT-AAG--ATTTT-A--TTTTTAAAG-TAAANAATATCGCTTCAGTTTTNTTNGGGTTGAAATTAACTAACCATTGTTTTGNCCANTCAGATATTATTANNAGATCGTGATTAATTATACCTTCAATGTC--TTGNACGGTTGTAGCTGAATNNN-ATAAAG---AACTGTCGTCAGCANACAAACGTG-CAA-ACT-AA-GA---AN-TGAATC--T-GNTATATCATTNACATACATNAGAAATAANAAG-GGNCCAAGGACGGANCCTTGNGGNACNCCNGCATTGNNNGAT-TT-------AAGATCGGA-TA-GTGCCGA-C-GAAAGAC-A-CCTTTTGNCGTCTATT-G---AGGTAATNA--GAA-CTCTAATTCTAAGA-TT--G-CCATTTATACCGT-A-TT-TTGCGT-AGTTTGAATAGTAGACCTTT-ATGCCANACTCGGTCAAATGCTTTNGATATA------TCACAAAATACCATACANGAANACTGTTTGTTATCTAANNCTTGACAAATGTGATGATATATGTCTACGAGTTGGT--AAGTNGT--AATGTCGCCA-GGTANAAA-TCCAGATTGNAATT--TATAC-AA--T-AGATT--ATTGTCAANAAGAAAGTT--ATACATAT-T-TTTANANACAATTCTTTCNANAAGTTTNCCAA---TACAGCTTAANAGNGAAATNGGTCTATAATTAGA-AGCNAACGNCTTG--TCGCCCTTTTTGAAAATGGGA-GTNACATTAG--CTATCTTCCATGAA-TCNGGA--AATTTACCTTCACGTAAAGANCGATTAA-ATAA-AA--TA--A-TAANGGTTTTGAAATAGT--ATTC--GGCAAA--TCTT--AGCATTCTGTGACTTATCAGGTCATGACC--ACAGGCCTTATTTAC---------A---CT--AA-TAAG--NAGAT-ATATCA-T--TC--AGTT-ATTNT--NTAATATG--AA----A----ATT--A-T-AAGTCG--A--TTTTGTGTTC-TGAAAA---TA-------TTCAGGT-AAGC-------ANTA--CCATTTGAGTCGTCTACGNTAGAGATTGAAGCAAAATAA-TCATTNAGACAGTCTGCTTTGTTCTGAT-T--TTNTATGTAAAATA-T----------CTGTCGTTA--ATAANATNATTTAAAGGA---GGAATTGCTT--GA-TGACGAATTATTTCCTTTNACAAAATGGCGAATA-ATTTTCCA-AAANCCCCTTTTATCATTTGNCCGTAAAT-CGGCTA---TAT-TTANTTCT--AAGTTACT-A-AA-AAAT-GTTCTTTNGCATG---TTTTT--A-GGTTATTAACTTTATTNC--GAA---TTTTTTTATATTTAGNCCAGTC-NT-TTGATTTGCCCG--A-TTTT-ACNGC-ATNN--T--TTTATGTCTATCTCTTATNC--GACAAAGTT-TCCT--TAATTT-T-GAATCANACCANGGTTTATCATCAGGT---ACGTACAGTCATTAT-TTTGGATGGTATACAT
gi|1 : TTTGACACTTTCTTCTGTCTGACAGAGAT-AACCAGCCAATTTCTTTATATACTTTTG------AA-ATGGATATTGATCTTGTTG-TGCCAGTAACAATTCTGGCAGCTTCATGTTG---AATTTTTTCTAAGTTGTCT-TTC----TCGT---AG-CAGGTACAGTTATCACACACTACCGAGGCGTATTCTAAAATTGGGCGAATAAATGATATATAAATTTGAT-TAAGAGAGTCC-CTACGTATTTTAAATTTAACTTTTCTCATCATGCTAAGA-ATT-TTG--GATGCAGACTGTATTATGTTTTCAATATGAGT--GTGCCATTTACCATTATTACTGATTGTAAGGCCCAAGTGTTTGTGAT-TTT-CAACAAATGTTA---CAGGAATATTTTCAAACA----A--TA-GTGATGGATTACG--AACTT-G--TTTT-GATG-TGAATAATATTGCTTCAGTTTTCAAGGGATTGAACGTAACTAACCACTGTTTTGTCCAAGCAGATAACATAACTAGATCGTGATTTATTATACCTTCAAGATC--TGATATATTTGTAGCAGTGCTCG-CTAAGG---AAGTGTCATCTGCAAACAAACGTG-CAAGACTTAATAA---AT-TG--TC--T-GCTATATCATTTACGTAAATTAGAAATAGTAAT-GGACCCAGGACAGACCCCTGCGTTACACCAGCATTGACGGACATTGTATGAGAAGA--GGA-T--GTGCCGA-C-AAAA----A-CCTTTTGGCTCCTACC-GGAAAGATAGTTATCGAA-CC--AATT-TAAGA-TTTTG-CCATTTATACCGT-A-TTGTTGCAT---TTTGAATAGAAGGTCTTT-GTGCCAAACACAGTCGAATGCTTTAGAAATA------TC------------ACA-GAAGACCAT-----------------ACAAGTGT-------TAAGTTTA-AAGTCAGTTGAATTAAC--AATTTGGT---GGTATATG-TC--GATT--AATTGGTATAC-AG--T-GGA----ATGATTAATTA------T--ATATATAC-T-TATACACACAA--CGTTCCATAAGTTTACCAA---TACAACTTAACAGGGAAATAGGTCTGTAATTACT-AACACACGA--TGAATCGCCTTTCTTATAAAGGGGA--TAACA--AG--------TGCATGAA-T---AA--GATT---CCTCGCGAAAAGACTTATTAA-ATAA-AA--TAC-A-TAAAGGTTTTGAAATTGT--ACCCATGGTTAG--TTTT--AAAATTCTGCGACTTACTAGGTC-TTACCCTACA-GCCTTATTAAC---------A---CCTAAA-CAAG--AAATC-ATGTC--T--TCAAAGTC-GTTCT--TTAATAT---------A----GTT--A-T---GTCGTTATTTTTTCTGTT--TGTCCG---TATGCTTGGTTCTGGT-AGGG-------TTGA--CCCTCT--ATCATCTACGTTAGAGATAG-AGCAAAAAAACTCATTTAAACAATTTGCT---TTCTCAT-T--GTCTGAGAAACATA-TATTTTCGGAGCTGTCGGTA----AGTGTTGTTTTCAGTATTCGG-ATTGTTTCGGATTTACT-ATTATT---TTTAACCAAGTTCCT-TTAGATTTTCCA-GTATTGATTTGGATTGTTTGTCCG-AGATGTGGCAA---TAT-TTTGTTCC--AAGTTGCTGA-AA-AAGC-GTTTTTTTGCATG---TTTTTTCA-AGTTGTTAACCTTGTTCCTTAAA---CGTTTGTATTTTT--TCCAATCATT-TTGGTTTGTAC-----TTTTGGTCGCTATTT--T--CTTTTGTCTGTCTCTT-TGT--CTTGAAGTTGTTCG--TAACTG-T-GAGTCGTACCAGGGTTTGTCATAAGGT----CGAACTGTTACTTC-TTTGGATGGGATACAT
gi|10 : attTGATCTTTACTTGATAATGCAAGAGA--C-CCATTCACTCTCTCTGTATAAATTAGCTAA-GGAGATCGAT------CGGGT-GGTACCAGTTACTATTCTTGCGGCTTCATTTTGTTGAAGTAATTCAA----TCAT-TTCAGAATTAT---ATTCAG-TACATCCAGCCCATACTATTGAACAGTATTCTAAA------C---TATAAGAAAGATAAATTTGGTCTAAT-GCATTT-CTACTAAAAGTGAATTTCATTTTCCTCATGACACCAATA-ACC-TTA--GAGGCAGATTTTGAAATATTATCGATATG-GTCATT-CCGTTTACCAGTTTTGCTTAGTGTGACTCCAAAATGtaagtcataagtgatagaaatgtctctgtaaatcgtgaacatgagtcatttatgtcaagttcttcaataaagtcccagtcttagtcggatatcatgtggtttaacgtttcatagtcacctttttgtaattc
gi|11 : TGGT--ACTGTCACCA-GGAACAAA-TCCAGATTGC-ATT--TTTGCTAG--T-ATATC--ATTGTCACGAAAGAAGATGAATACATG----TTTAAATATATTTTTTTCAAAAACTTTCTCAATTGTACAG---AGTAGAGAAATTGGTCTATAGTTAGA-AACGAGAGACTTG--TCACCACCTTTGAATATCGTA-CAGACATTAG--CTTCCTTCCATATA-TTAGGAACAATT--CCTTCACGTAAGGAGTGATTGA-A-AA-GA--GAACA-TAAGGGGTCTGAG--AGTTCATTT--GCCAAT--TCTT--A
gi|12 : ttgatCAGTC-ACATGGATTT-CCTG--A-TCTT-AATGC-TTTAGAT--TTCA-GTCGATCTCTTATTTTTGAATATGTT---CTGATAGTG----GAGTCATACCAAGGTTTATCATTGGG----GCGTACAGTAACCGT-TTTGGATGGTATGCAT
gi|12 : --ACAGGCATCATTTAC---------AGTTCC--AC-T-----TAAA--ATATCGCT--CC--AGTC-ATAGT--CTGATATG--AG----ATC--ATTCAA-T-AAGTcttttgacaagtactaaaaaggtatctgtaaaactattacaggcatcatttacagttccacttaaaatatcgctccagtcatagtctgatatgagatcattcaataagttaaaattggcttt
gi|13 : cagtcacatggatttcctgatcttaatgctttagatttcagtcgatctcttatttttgaatatgttctgatagtggagtcataccaaggtttatcattggggcgtacagtaaccgttttggatggtatgcatcttttgacaagtactaaaaaggtatctgtaaaactattAATCATACCATGGTTTATCATTTGGT----CGTATAGTCA-CATATTTGGAAGGGATGCATtaaaattggcttt
gi|14 : CAATGTC--TTGGA-GGTTGT--TTAAATCTCTGTAAAGTTTAGC-ATCGTCAGCAAATAA-TTTG-CAA-A-T-AT-GACTTACCTGTATC--T-GGTATATCATTAATAAACAAGATAAATAACAAG-GGACCAAGGACAGATCCTTGGGGTACGCCaattcagctagctccataaatttggaagtaacatgttgacaggcaatatcaacattataattgtaaagaattgatcagtcggtattcgaaataagatcatttaat
gi|15 : ATG--AA----A----ACT--A-TCAATTCG--A--TTTTATGTTC-TAAGAC---TGAG-----TTCAGG--AAGG-------ATTA--C-ATTTGAGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTCACACAATCTGCTTTTTCTTGAT-T--act
gi|16 : A-AA---AA-TAAGTC--T-GAAGTACCATTTACATA------AAACAAAATT-GGTCCAAAGACCAAACCTTGTGAAACCCCGGCA-TGTACGTT-TT-------AAGag
gi|17 : -ATTTTCCA-AGATCCCCTTTTATCATTATACTGCAAGA-CAGCTA---AAT-TTATTTCT--AAGTAACG-A-AA-AAAT-
gi|18 : ATGCCATTTATATACAGAAAAAATAAAAAGAGGACCAAAGATACAGCCTTGAGGTACTCCa
gi|2 : TTTGATTTTTTCTTCTTTGGGGAAGAGTTTC-CCACCCACAGTCTTTATATAATTTTTCTAACGAA-ACGGATCTTG--TAAGT-----CCGGTATCTATACGAGCTGCTACGTTTTG---AAGCTTTTCAA----GGGA-TTCAGAAGAGG---AAGCAG-TACAACCGTCCCATACAATAGATGCATACTCGAGAATAGGTCGAATATATGACAAGAATAGTTGAT-TAAT-GTTGCT-CTATTAAGGGAAAATTTCAATTTTTGCATTATACCAA-TTATTATTAATGAGGAAG---TCAAGATTTT-TCTATATG-TTTTGT-CCATTTTCCATTTCTATTAAATGTTACTCCCAGATGTTTATAGT-TTTGTA-CAAATATTATTTCAG---T-TTTATAAAAA----AAACAAATG-CGGATGAAG--ATTTTCA--TTTTTAAAGGTAAAGAATATTGCTTCAGTTTTATTTGGGTTGAAATTAACCCACCATTGTTTTGACCATTCTGTTATTGTTATCAAATCGTAATTAATTATGCCTTCAATGTC--TTGAACGGTTGCAGCTGAATAAA-ATAAAG---AACTATCATCAGCATATAATCGTG-CAACACT-AA-GA---AG-TGAATC--T-GAAATATCATTAACATACATGAGGAATAAAAGG-GGTCCGAGGACGGAGCCTTGTGGAACCCCTGCAGTGTCTGGT-TT-------AAGATCAGA-TA-GTGCGGAGT-GAATGAC-AACCTTTTGTTGTCTATT--------TAATAA--ATA-CTTTGATAC------------CCATCT-TA--GT-AATT-TTGCGT-AGTTTGAA-AGCAGTCCCTT-ATGCCATACTCTGTCAAATGCTTTGGAGATA------TCTCAAAATACCATACATGAAAACTGATTATTATCTAGCGTTTGACAGATATGATGATATATGTCGACTAATTGAT--ACGTTGT--ACTGTGGCCA-GGTAAAAA-AACAGACTGAAATT--TATAC-AA--T-A-ATTGAATTGTCAAGAA-AAAGTT--ATACATAT-T-TTTAAAAACTATTCTTTCAAGAATCTTTCCAC---AACAGCTTAAAAGTGAAACGGGTCTATAATTAGA-AGTTAACGTTTTA--TCTCCCTTTTTGAAGATGGGA-GTAATTTGAG--CTATCTTCCATGAGTTTTGGA--AA-AAACTTTCTTGTACAGAACGGATAA-AAAT-GA--TA--ACTAATGGTTTTGTGATAG---AATC--TGCAAACCTCTT--ATCATTTTATGACTTATTTGGTCTAGACC--ACTGGCTTTATTTGT---------A---TT--AAGTGAG--GAGATAATATCA-T--TA--ATTTCATCTTGAGTAACATC--AA----A----ACT--A-TCAAGTCG--A--TTTTGTGTTCTTAAAAA---TAG------TTCAGG--AAGC-------ATTA---CATTTGAGTCATCTACGCTAGAGATTGACGAAAAATAA-TCATTTAAACAGTCTGCTTTGTCTTAA--T--TTGTA-GT-AAATATT----------TTGTTTTGACCATTACACAACTT---GGA---GAAA-TGTTT--GA-AGAAGTATTATT---CTTAACAAAATGGCGTATT-ATTTTTCA-AAATGCCCTTTTATCAATGTACTGCAAGT-TAGCTA---TAT-TTATTTCT--AAGTTACT-A-AA-AAATAGTTATTATGCATGTTTTTTTT--A-AGTTGTTTACTTTATTAC--GAA---CTTTTTTATATTAAGACCAATC-AT-TTAATTTGCCAGTTATTTTT-GTTGT--TCT--T--TTTATAT-TGTCTCTTTTTC--G-CGACATT-CTCC--GAATTTCT-GAATCATACCAGCGTTTATCGTCAGGTCTAACATATA--CAT--T-TTTGAATGGTACACATacttt
gi|3 : TATACGTGCAGCTTCATTTTG---TAATTTATCGA----GTGAATTC-GA--TGTTTGAT-CAA-AGTAATTGTTCCAGACTAGAGAGGAATATTCAAGAATTGGTCGAACATTCGAAATGTAATTTTGAT-TGAG-GGATTTTCGACCGAGTG-----------------AGTATAC------GTT-TT--TGAAGCAGATTTTAAAATCTTATCAACATG-ATCGGT-CCATTTTCCGTCTTTA---AA-GTTACACTTAGATGTTTATGAGATTC-TA-CAAATTGAATTTCTA---CGTTATTAAATGTTATA--TAAG------AT-AAGTAATTGT-AATCTCTTAAAG-AAAACAACATCG-----GTTTTGTTAGGGTTGAAATTTACTAGTCATTGTTTAGCCCACTGAGATATTATTAAAAGATCATGATAAATTAAACCTTCTATATCAGTT--ACTGATAAGGCTGAATAGT-ATAATG---AACTGTCGTCAGCATACAAACGTTTCAA-ACT-GA-G-------TAAATCGTTAGCTATATCATTAACATAAATTAAGAATAATAAA-GGTCCAACAACGGATCCTTGAGGCACACCTGTATTAAGAGAT-TT-------TAAATTGGAATATGTACC---CTGAAAAACTA-CCTGTTGAGATCGATTTGTT-AAGTGATCA--GAAATTCTAATTCTAAAAGTT--GACCATTTATACCGTTA-TC-CTG--T-AGTTTAAATAGTAAACCCTT-ATGCCAGATTATGTCAAAAGCCTTTGTTACG------TCACAAAATACCATACATAAATACTGTTTGTTATCAAAGGTTTGACAAATGTGATAATATATGTCTATAAATTGAT--AGGTAGT--AGAGTGACTTTGGCAAAAA-GCCTGACTGGTATT--TATA--AA--TCAAATT--ATTATCAAGAA-AAAGTT--ATACATAT-T-CTTAAAAACAAGCCTTTCAACAAGTTTTCCGA---CACAACTAAGTAAAGACACAGGTCTGTAATTTGA-CACCAATGACTTG--TCTCCCTTTTTAGAATTGGGA-GTTACATTTG--CAATCTTCCACAAA-TCGGGA--TATATACCTTCACTTAAAGAACGGTTAA-ATAA-AATTTA--A--AATAGTTTTGAAATAGC--TTTC--GACACA--TATTCCAGCATTCTGTGACTGATCATATCATGACC--ACAGGCCTTATTTACTGGTTAAGTA---CT--AA-TAAGTTCAGAT-ATATCA-TCCTC--AGTT-ATTAT--AAAATGTG--AAAGGGA----ATT--A-T-AAG--------TTTTGTAT-----AAAA---TA--------TCAGGTAAAAC-------AACA--CCATT---ATCGTTCACAGTGGATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGCTTTGTTCTGAT-TTATTATATGTAAAATA-T-----------TATCATTA--ATAAAATCATTTAAAGGA---GG-TTTGCTT--GA-TGACGAATTATTTCCTTTGACAAAATAGCGAATA-ATTTT
gi|4 : TTATTCC---A-TT-TTGCATTAGCTTGAATAATAGAACTTTGAT-CCAAACTCGGTCAAACGCCATTGATATACATGTATCACAAAATATCATACAAGTATATTGTCTGGAATCCAATCCTTGGGCAATATGGTTATATATATCTTTGAGTTGGT--AAACTGTCGAATGTC--CA-T-TAGAAAGTCCTGATAAAAATT--TATAA-AAATT-AGTTT--ATTTTCAATCAGAAAGTT--ATAAATAT-G-TTTGTAGACAACTCTTTCCATAAGTTTACCAA---CACAGCTTAATAAAGATATTGACCAATGATAAGATGGC--ACGTCTGT--TTGACCTTTCTTAAGATGAGACATAACAGTAG--TTGACTTCCATGA---CTGGA--AATTTACATTAAAGTAAGGAATTATTAACATAG-A
gi|5 : tttctcctcGCATTCTGTGACTTATCAAGACATGACC--ACAGGCTTTGTTTAC---------A-------------G--GAAGT-AACTTA-A--TC--AGTTCATTTT--CTAATATTTCAA----A----ATC--AGT-AAGTTT--A--TTATGGGTTT-TGAAAACACTA-------CTTAG-T-AAGTTGGTGATAATGTTCCATT---ATCAACAACAGTAGAAATTGAAACAAAATAC-TCATTTAGACAGTCTGTTTTATTTTGGT-T--TGTTATGCGAAATT-TA---------CTGTTGTTG--TTTATATAACTTAACGGA---GGAATTACT---GT-TGA--AAT-ATCCCCTTTCACAAAGTGATGAATA-ACTTTCCA-AAAGCTTCGTTTATCATTTGCTTGTAGAT-CGTTTAAAGTAT----GTTCT--AAATTATT-G-AA-AGGT-GTTC--------------TTT--A-GGTTATTTACTTTATTAC--GAT---TTTTTTTGTATTTTGCCCAATC-GT-TTAATTTGCCAG--A-TATT-ACTGC--TTT--TGATTTATATCTATATCTTAGTT--TATAAA-TT-GATT--TTATTT-TAGATTCAAACCAAGGTTTACTATCAGAT---Actgtggtttagtgtggtttgtatactgaaaaattctgggaattgtgtcttttccgacagctttatttgggtctaaagtaccgatcaaaacaattatgtctgattcagtaacgatcaagtttggtattattcgttttaaagacacagcctggaagtaacatattattgttaatactgtcatttattgttgagatggaaacagtttgctttatctgcatcattaaaatagaatgaatcatcataataaacagaggtatattttagtggaggaattatttc
gi|6 : AGAT-ATATCA-TCTTC--AGTT-ATTAT--AAAATGTG--AA----AGGGAATT--A-T----TTG-----TTTTGTAT-----AAAA---TA-------T-CAGGT-AAAC-------AACA--CCAGT---ATCGTTCACAGTGAATATTGAAGCAAAATAA-TCATTAAGGCAGTCAGTTTTATTCTGATGTG-TTATATGTAAAATA-T-----------TATCATTA--ATAAAATCATTTAAAGGA---GGTA-CACTT--GA-TGACAAATTATTTCCTTTCACAAAATAGCGAATA-A-TATCCATAAAACTTCTTTTGTCATTTGTTCGTAAAT-CG-----------TTAAGTGTGAAAATTATT-ATAG-AAAT-GTTCTTTGGCATA---TATTA--T-GGTTATTAACTTTATTTC--GAATATTTTTTTTATATTTAAAACAGTC-TA-TTGTTTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTCTATCTCTTATAC--GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATGATTGACAATCAGG----ACGTACAGTCATTAT-TTTAGATGGTATACATtaactgttctatgttttaattgaaaacaatcattcacaattttaatagatgtttctgtaaatagagcacttgcctatatagtgtacagtataaaaggatattgcaattgaaattttcggtttgattatgtaaagattctatattagctt
gi|8 : acttaaaagctcAGACCTTT-TAACCACACGCGATCAAATGCTTTCGATACA------TTACAGAATACCATACAAGTGAATTGTTTATTATCTATGCCTTGACAAATTTGATGATATATATCTAAAGGTTGGT--AAACCGTGGAATGTCCTCT-GG--GAAA-TCCAGATTGTAATT--TATA--AA--TGAGGTT--ATTATCAACAAGAAAATT--ATATATATATGTTTGTACACAATTCTTTCCATTAACTTGCCAA---TACAGCTTAAGAGTGAAATTGGTCGATAATTAGA-CGCTTA--GTTTGTTTTACCTTTCTTGAAAAGTGGA-ATTAC--TAGGACTGATTTCCATAAA-TCTGGA--AATTCACATTTAATTCATGATCTATTAA-ATAACAG--TA--C-TAGAGGTTTAGAAATACT--ATtccttcatattttcataaaagattctgtaaacagttcacatgctgtatttaaattacagtttgacagacacttccaatcaaaattgttttatttttgacaactcaaagttagtttt
gi|9 : caaaTTCCA-AAAATTTGTTTTGTCATTTGTTTGTAAAT-CG-TTA---AGCGTTAACTCT--AAATTATT-A-AAGAAAT-GTTCTTTGGCATA---TTTTT--ATGGTTATTAACTTTATTTC--GAG---TATTTT--TATTTATCCCAGTCTTT-TTGATTTGCCCG--A-TTTT-ACAGCAATAG--A--TTTAAGTATATCTCTTATAT--GACAAAGTT-TCCT--TAATTT-T-GAATCAAACCATAATTGATCACCAGG----ACGTACAGTTATTAT-TTTAGATGGTATACATattttatatact
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CGTTCTTTAAAAAAATATGTCGTTAATTGTTCTGTTTGTCCGTATGTTCGGTTCTGGAAGTGTTGACCCTCTATTATATGCGTTAGCAAAAACTCATTTAAACAATTTGCTTTCCCATTGTCTAATGTATTCATGAATTGGGATTGTTTCGGATTTGCTTTTTTAACCAAGTTCCTTAGGACTGTCCATTGTTGATTTGGATTGTCTGTCCGAGGTGTGGCTATCTTTTGTTTCAAGTTGTTAACCTTGTTCCTTAAACGTTTGTATTTTGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTCTGTAAATCGTGAACATGAGTCATTTATGTCAGGTTCTTCAATAAAGTCCCAGTCTTGGTCGGATTTTACGCGATTTAACTGTTCATAGTGACTTTTTTTGTAATTCC
Unaligned ( gi|19 ): CTCATCGTCTGAGAAACATATATTTTCGGAGCTGTCGTTTAGTGTTG