lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 1 2222222 555555555555 1 1111 4444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11111111111111111111 1 1111 55555555555555555555555 111111 22
lowQualScore : 111111 66 4 1 0 8888888 5 000000000000 8 3 3 4444 4444444444444444444444444444444444444444444444444444444444444444444444444444444 666666 99999999999999999999 2 2 9 5555 444 666666 2 55555 4444 1 5555 2 0 2 2 6666 3 0 88 666 22222222222222222222222 6 111111 44
lowQualScore : ...... .. . . . ....... . ............ . . . .... ............................................................................... ...... .................... . . . .... ... ...... . ..... .... . .... . . . . .... . . .. ... ....................... . ...... ..
lowQualScore : 555555 88 2 6 2 4444444 7 999999999999 9 0 0 2222 2222222222222222222222222222222222222222222222222222222222222222222222222222222 222222 88888888888888888888 7 7 8 3333 444 666666 2 99999 7777 6 0000 5 0 7 7 1111 6 2 44 444 00000000000000000000000 4 888888 11
consensus : TAGGCCATAA-T--AAATTAATT-CCTAGATTTTCATCCCCG-T-C-GC-CCCCG-A-AT-TT-TTTTACCCGCCCCAACATATTTTATTGTC----TTGTCC-GATAACATGG-TTTTT-NAATTGTA--------ATTTGCCAAAACG-----------------------GC-----ATTT------TGAT----------TTT-------C-TT-TCATT----T---CATG-----CCTAATACGA-----CACTT----CCGTTTTAATA----TCTGAAA-A-A-T-AAAA---A-ATA-AAA---TTGCATC--C-CCNTCA---C-TATNTT--GAAACAAATTTGGATGAAAA
Reference ( gi|4 ) : TAGGCCATAA-A--AGATTAATC-CATAGATTTTCATCCCCA-T-C-GC-CCCTGGG-GT-TT-TTTTACTCGCCCCAACATATTTAATTGTC----TTGTTCTGATACCA--GTTTTTCTTAATGGGA--------ATTTACCAAAATG-----------------------G------ATTT------TGAT----------TTT-------C-TT-TCTTT----T---CATG-----CCTAATACAA-----CACTT----CCATTTTAATA----TCTGAAA-A-A-T-AAAT---A-ATA-GAA---TGGCATCG-C-CCGTCA---C-TGTATT--GAAGCAAATTTCAATGAAAA
gi|1 : TAGACCATGA-T--ATATTAATTTCATAGATTTTCATC
gi|19 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttTAGGCCATGA-A--TGCTT---C-C-TCAATTTTCATCTCCACT-C-AC-CCCC--A-AT-TT-ATTTACCCGCGCCAATATATTTTATTATC----agtttgatttta
gi|9 : gagttacagcctggcgtaatttAGTCCATAA-T--AACTTAATT-CCTATAATTTTATCCCTG-T-CTGC-CCCTGA---------TTTACCCTTCC--ACATATT-----GCC----TTGTCCTGAT--CATGGATTTTTTTA-T---A--------ATTTGTCAAAATGACGGCACCACTTATTAAACTTTTG------ATTTTTATAATGAT----------TTT-------TGTT-TCATT----T---CATG-----TCTAATATGA-----CATCT----CCTTTTTAATA----TCa
gi|1 : ttaAGGCCATAA-T--GAATTAATT-CCTTCATTTTCA---CCA-A-C-GCGCCCTAGA-TT-TTCTTTTACGTGTCCAAACATATTTTATTGTC----c
gi|2 : ctataAGGCCATAA-T--AAATTCGTT-CGTAGAATTTCCTGCCGG-C-CTGC-CCCTGTA--T-TT-TTTTACCCACACCAACATATTTTATTGaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttgatgaaaatctatgaaattaatatatcatggtctaagtttgatttta
gi|5 : AGGCCGTAATAGTAGGTTAATC-CCTAGATTTTCATCTCAG-TTC-AC-TCCCGTTTAT-TT-ATTTACCTGCCCTGACATATTTTATTGTC----attaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaatgattctctttaattttagttctaatactacatttccattttaatatctgaaaaataaaaaataaaaatt
gi|6 : gccatcAGGCCATAA-T--GAATTAATT-CCTAGATTTTCATaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatacgggtttatgatatcctttcatttcctgaccaatacgacacttcattatctgacaaat
gi|17 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagttctttcattacgtgcctaataggacacttcctttaaaataaacaatactagtataaattgcaccttcacctctatagtgaaacacatctacAGGCCGTAA-T--AAATTAATT-CCTA-ACTT--------------GC-CCT---G-ATATT-TTTTACCCTACCCAATATATTTTATTGTCAAAATTGT----ACAATA--G-------AAACTGTA--------ATTTGCCAAAATG-----------------------tatcatg
gi|18 : aagccaataCCATCA-T--AAATTAATT-CCTAGATTTTCATCCcaccatctttatgccaacattttgatc
gi|22 : atgtttaaatgattttcctcaattttgtgcctaatatgacactacattctaaaaactgaaaaattgcagcccctgccatagttatgaaatataatt--AAATTACTT-CCTAGATTTTCTTCCCCA-C-CCGC-TCCTG----T-AT-TTTTACACGCTCCAACATAATTAATTGTC----GTGTCCAGGTAacatata
gi|8 : atTTTTTTACAATGGAATCGTAATTATTTGCCAAAATGCTGCTGCATT-------------GTAAC--ATTT------TGAT----------CTTTAAATAAC-GT-TCTTTCAATT---CATG-----CTTAATACAA-----CACTT----CTATTTAAATG----TCTGAAG-A------------A-ATA-AAA---TTGCATC--C-CCCTC----C-TATTTT--AAAATAAATTTGCATAAAA
gi|12 : taAATTGTA--------ATTTGCCAAGACG-----------------------GCGCCGCATTT------TAAC----------ATT-------T-TGATCTTT----T---AATGTCAATCCTAAAACGA-----TGTTT----CCGTTTTAATA----CCTGAAA-ATA-T-Atataggaattaattatatggtctaatatg
gi|11 : ttatatattttttatttttataacgg--------ATTTGCCAAAACA-----------------------AC-----ATTT------TGAT----------CTTAAAATGAT-TT-TCTTT----TATTCATG-----TCTAATAGGA-----CACTT----CGATTTTAATA----TCTGAAA-A-A-T-AAAA---A-A----AA---TAAAATTGAC-CCCTGA---C-CATATT--TTA--AAATTGGGATGAAAAcacaggtccctattttgaaacataattggataaaaatttaggaattcatttgtt
gi|5 : tttcttttatttttacaacagaatttttACG-----------------------G------GTTTA-----TGAT----------ATC-------C-TT-TCATT----T---CCTG-----ACCAATACGA-----CACTT-----CAT-----TA----TCTGACA-A-A-T-actaagaattcactcattatg
gi|13 : gccatcaggccgtaatagtaggttaatccctagattttcatctcagttcactcccgtttatttatttacctgccctgacatattttattgtcaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatat------ATTT------TGATCTTTAAAATATTT-------C-TT-TCATT----G---CATG-----CCTAACATGA-----TACTT----CGGTTTTGAGA----TCTCAAA-ATATT-AAAA---A-AAA-AAA---TG----CA-C-CC-CCA---CATCTATTTGGAAACAAATTTGAATGAAAA
gi|3 : cattttaaacTTTA-----TGATGA--------TTT-------G-TT-TCCTT----T---CATG-----TTTAGTACAATGTGACACTT----CCATTTTAATA----TATGAAA-ATA-TAAAAA---A-ATGCAAA---TTGCATC--C-CGGTCC---T-TATTTT--AAAACTAATTTTGATGAAAAggtaagatttaaatcatcttggcctta
gi|7 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagTT------TG-------------TT-------C-TT-TCATC----T---TATT-----CTTAATACAA-----CATTT----CCGTCCTACTA----TCTAAAATATA-T-AGATTAAA-AAA-GAAAAATTACATCC-A-CCCTTA---T-T---TC--TAAACAAATTAAGATGAAAAaagaattaatttactatgacctaatatttatttta
gi|2 : atttgtgacaatggaagttctgtaatttgctgaaacagcaccatgatttaaaccttttgatctttaattaaa------TGAT----------TCT-------C-TT-TAATT----T---TAGT-----TCTAATACTA-----CATTT----CCATTTTAATA----TCTGAAA-A-A-T-AAAA---A-ATA-AAA---tctaggaatttattgattat
gi|15 : aggccataataaattcgttcgtagaatttcctgccggcctgcccctgtatttttttacccacaccaacatattttattgattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaa------TGAT----------TTT-------C-AT-TCATA----T---CATG-----CTTAATACGA-----CATTTCCTACCATTCTAATA----TCTGAAA-A-att
gi|18 : tttttattcaaatttgtattttttggacaacaggaaccataatttgccaaaacagcgccgaatttttcaaccttttgaatctttaaaa------TGAT----------TTT-------C-CT-CAATT----T---TGTG-----CCTAATATGA-----CAC-T----ACATTCTAAAA----ACTGAAA-A-A-T-
gi|25 : atgtttaaa------TGAG----------TAT-------C-TT-TCATT----T---CATG-----CATAATATGA-----CACTT----Ctgcagcccctgccatagttatgaaatataattggatgaaaatctaggaattaatttatgatggacatata
gi|10 : ttaaaacatgttgatctttaaaAT----------GTT-------C-TT-TCATT----T---CATA-----CCTAATACAA-----TA-TT----TCATTTTAATATCTGTCTGAAA-T-A-T-AAAA---G-TTA-AAA---TTACA----C-CC-------T-TTTTTT--TAAACAAATTTAGATGAA
gi|1 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaatt----------TTT-------C-TT-TCATT----T---CAT--------T-ATATGA-----CACTT----CTGTTTTAATA----TCTAAAA-A-A-A-AATT---ATATA-TAA---TTGCACCC-T-CTGTCG---C-TTTTTT--GATGAAAATCT--ATGAAAcagttgggaattaatttattatgg
gi|6 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaaTT-------C-TT-TCATT----A---CGTG-----CCTAATAGGA-----CACTT----CC--TTTAAAA----T-----A-A-A-C--AAT---A-CTA-GTA---TAA-ATTG-CACCTTCACCTC-TATAGT--GAAACACATCTACATGAAAAttaatatatcatggtctaagtttgatttta
gi|16 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagTTT----T---CCT-------TTACTACAA-----CACTT----CTGTTTTAATA----TCTGAAA-A-A-T-AAAtctaggaattaattcattatggccttatcatg
gi|14 : gtccagattgcaaataaaattacattttacaaccagaacccaatttgccataacgacaccgcatttaaaaccttttgttctttataaatttatgagTATGA-----CATTT----T-GTTTTGATA----TCTGAAA-A-A-T-AAAA---A-ATA-AAA---TTGGACC--C-CTGC-----C-CATATT-----GCAAAgt
gi|21 : attttattgtcatctccagaatgggaattgcaatttgtctaagctgttttttaactttttgatctttaaaatgattttctCTT----TTGTTTTAATA----TCTGAGA-A-A-T-AAAA---A-ATA-AAA---TTGCA----C-CC-------C-TGTTTT--GCAACAAATTTGGATGAAAAaaaaaaaaatta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTTAAATGATTTCTTTCAATTCATGCTCAATGCAACAACGAAAACAAAAAACTGCACCATCCCTATTTTTAAACAAATTTGGATAAAAATCTAGGAA
Unaligned ( gi|23 ): AATGAAATTGCAGCCCAGCTTCTACTTTGAAACAAGTTTGGATAAAAATGAAGGAATTCATTTATTATGGTCCAATATGTT
Unaligned ( gi|24 ): ATTGTCATCCCTGCGCACCACCGTTATTTTTTGACATGCCGTGAAATATTTTACTGTCAAAAACAA
Alignments
lowQualScore : 22222 2222222 999999999999999999999 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 11111111 1111111 22222222222222
lowQualScore : 444 2 1 1 33333 4444444 4 0 1 3 7777 0 666666666666666666666 777 666 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 333 4444 000000 22 55555 4444 66 4444 4 11111111 33 2 0000000 66666666666666 1 2 0
lowQualScore : ... . . . ..... ....... . . . . .... . ..................... ... ... .............................................................................................................................. . ... .... ...... .. ..... .... .. .... . ........ .. . ....... .............. . . .
lowQualScore : 444 5 4 9 66666 1111111 4 1 9 3 7777 7 999999999999999999999 000 444 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 777 5555 555555 99 33333 2222 44 5555 4 88888888 44 5 6666666 55555555555555 0 7 6
consensus : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTCC-GATAACA-GG--------AATTGTAATT---TGCCAAA---ACG-------------GC-----A--------------TTT-T-----------------------GA-----T-----------T-----------T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAATTGCACC-C-C--CNTC--CTATTT-TGAAACAAATTTGGATGAAAA
Reference ( family-525 ) : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-T-C-GCCCCCGA--A-TTT-TTTTACCCGCCCCAACATATTT-TATTGTC----TTGTCC-GATAACATGGTTTTTN--AATTGTAATT---TGCCAAA---ACG-------------GC-----A--------------TTT-T-----------------------GA-----T-----------T-----------T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAATTGCATC-C-C--CNTCA-CTATNT-TGAAACAAATTTGGATGAAAA
gi|1 : AGGCCATAATGA---ATTAATTCC-TTCATTTTCACCAACG---C-GCCCTAGA--T-TTTCTTTTACGTGTCCAAACATATTT-TATTGTC----
gi|1 : ctata-----------T-----------T--T--------------C-------------TTTCA-T---TTC----AT---------T--A-TAT-----GACACTT----CTGTTTTAATA----TCTAAAAA-A---------AAATTATA-TA-------TAATTGCACC-CTC--TGTCG-CTTTTT-TGATGAAAATCT--ATGAAAaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttgatgaaaatctatgaaattaatatatcatggtctaagtttgatttta
gi|1 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaaTAGACCATGATAT---ATTAATTTCATAGATTTTCATCttaatatatcatggtctaagtttgatttta
gi|10 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttA-----T-----------G-----------T--T--------------C-------------TTTCA-T---TTC----ATA------CCT--AATAC-----AATA-TT----TCATTTTAATATCTGTCTGAAAT-AT--------AAA--AGT-TA-------AAATTACA-C-C-C--TTT------TTT-TTAAACAAATTTAGATGAAagtttgatttta
gi|10 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattCCATAATAA---ATTAATTCC-CAACTGTTCATCcagttgggaattaatttattatgg
gi|11 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattatgttctttcatttcatacctaatacaatatttcattttaatatctgtctgaaatataaaagttaaaattacacccttttttttaaacaaattta--AATTTTTATT---TGCCAAA---ACA-------------AC-----A--------------TTT-T-----------------------GA-----TCTTAAAATGATT-----------T--T--------------C-------------TTTTA-T---T-C----ATG------TCT--AATAG-----GACACTT----CGATTTTAATA----TCTGAAAA-ATAA------AAA--AAA-TA-------AAATTG-A---C-C--CCTGA-CCATAT-TTTA--AAATTGGGATGAAAA
gi|11 : tttcttttatttttacaacagCATAATGA---GTGAATTCT-TAGTTTTTCATCCCactaagaattcactcattatg
gi|12 : tttcttttatttttacaacagaatttttatttgccaaaacaacattttgatcttaaaatgattttcttttattcatgtctaataggacacttcgattttaatatctgaaaaataaaaaaaataaaattgacccctgaccatattttaaaattATATATTT-T-TTATT----TT-T----ATAAC--GG--------AATTGTAATT---TGCCAAG---ACG-------------GCGCCGCA--------------TTT-T-----------------------AACAT--T-----------T-----------TGAT--------------C-------------TTTTAAT---GTC----AAT------CCT--AAAAC-----GATGTTT----CCGTTTTAATA----CCTG-AAA-AT--------A---------------------TACA---C-A--GGTCC-CTATTT-TGAAACATAATTGGATAAAAA
gi|13 : ttC-----A--------------TTT-T-----------------------GA-----TCTTTAAAATA-T-----------T--T--------------C-------------TTTCA-T---TGC----ATG------CCT--AACAT-----GATACTT----CGGTTTTGAGA----TCTCAAAATAT--------TAA--AAA-AA-------AAAATGCACC-C-C--CA-CATCTATTT-GGAAACAAATTTGAATGAAAAtttaggaattcatttgtt
gi|14 : cattttaaaATTT-TATTGTC----ATCTCCAGA----ATGG-----G--AATTGCAATT---TGTCTAA---GCT-------------GT-----T--------------TTT-T-----------------------AA-----C-----------T-----------T--T-----------------------------TTGA-T---CTTTAAAATGATTT--TCT----TAT-----GACATTT----T-GTTTTGATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAATTGGA-C-C-C--CTGC--CCATAT-TGCAAAAAAggtaagatttaaatcatcttggcctta
gi|15 : CAAATTTGTATT-TT----TTG----GACAACA-GG--------AACCATAATT---TGCCAAA---ACA-------------GCGCCGAA--------------TTT-TTCAACCTTTTGAATCTTTAAAATGA-----T-----------T-----------T--T--------------C-------------ATTCA-T---ATC----ATG------CTT--AATAC-----GACATTTCCTACCATTCTAATA----TCTGAAAA-aaaaaatta
gi|16 : tttttattAATT---TGCCATA---ACGACACC--------GC-----A--------------TTT-A-----------------------AAACCTTT-----------TG----------T--T--------------C-------------TTT-A-TAAATTT----ATGAGTTTTCCTTTACTAC-----AACACTT----CTGTTTTAATA----TCTGAAAA-AT--------AAA--
gi|17 : gtccagattgcaaataaaattacattttacaaccagaacccAGGCCGTAATAA---ATTAATTCC-TA-ACTT--------------GCCCT-GA--T-ATT-TTTTACCCTACCCAATATATTT-TATTGTCAAAATTGTAC-AATAG----------A--AACTGTAATT---TGCCAAA---ATG-------------gt
gi|18 : aagccaata-T-----------------------GA-----T-----------T-----------T--T--------------C-------------CTCAA-T---TTT----GTG------CCT--AATAT-----GACACTA----C-------AT-----TCTAAAAA-CT--------GA--------A-------AAATTGCAGC-C-C--CTGCC-ATAGTTATGAAATATAATTGGATGAAAAcaccatctttatgccaacattttgatc
gi|18 : atgtttaaaCCATCATAA---ATTAATTCC-TAGATTTTCATCCtctaggaattaatttatgatggacatata
gi|19 : atgtttaaatgattttcctcaattttgtgcctaatatgacactacattctaaaaactgaaaaattgcagcccctgccatagttatgaaatataattTAGGCCATGA------AT-GCTTCC-TCAATTTTCATCTCCACT-C-ACCCCC-A--A-TTT-ATTTACCCGCGCCAATATATTT-TATTATC----acatata
gi|2 : gagttacagcctggcgtaatttAGGCCATAATAA---ATTCGTTCG-TAGAATTTCCTGCCGG-C-CTGCCCCTGT--A-TTT-TTTTACCCACACCAACATATTT-TATTGa
gi|2 : -T-----------------------GA-----T-----------T-----------C--T--------------C-------------TTTAA-T---TTT----AGT------TCT--AATAC-----TACATTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAAattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaatgattctctttaattttagttctaatactacatttccattttaatatctgaaaaataaaaaataaaaatt
gi|20 : aggccataataaattcgttcgtagaatttcctgccggcctgcccctgtatttttttacccacaccaacatattttattgattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaa-T-----------------------GA-----T-----------T-----------T-----------------C-------------TTTCA-A---TTC----ATG------CTC--AATGC-----AACAA-------CG-----------------AAA-AC--------AAA--AAA-C------------TGCA-----C--CATCC-CTATTT-TTAAACAAATTTGGATAAAAAatt
gi|21 : tttaaaCTT----TTGTTTTAATA----TCTGAGAA-AT--------AAA--AAA-TA-------AAATTGCACC-C----------CTGTTT-TGCAACAAATTTGGATGAAAAtctaggaa
gi|22 : aaaagcATAA---ATTACTTCC-TAGATTTTCTTCCCCA-C-CCGCTCCTGT--A-TTT-TT--ACACGCTCCAACATAATT-AATTGTC----GTGTCC-tctgatctaggaatt
gi|23 : AA-TG-------AAATTGCAGC-C-CAGCTTC---TACTT-TGAAACAAGTTTGGATAAAAAaggta
gi|23 : TGGACCATAATAA---ATGAATTCC-TTCATTTTTATCCtgaaggaattcatttattatggtccaatatgtt
gi|24 : aatgaaattgcagcccagcttctactttgaaacaagtttATTGTCATCCCTG-CGC-ACCACCGTT-A-TTT-TTTGACATGCCGTGAAATATTT-TACTGTC----atatgtt
gi|25 : -T-----------------------GA-----G-----------T-----------A--T--------------C-------------TTTCA-T---TTC----ATG------CAT--AATAT-----GACACTT----Caaaaacaa
gi|3 : ttaaaacatgttgatctttaaa--------------TTTAT-----------------------GA-----TGA---------T-----------T--T--------------G-------------TTTCC-T---TTC----ATG------TTT--AGTACAATGTGACACTT----CCATTTTAATA----TATGAAAATAT--------AAA--AAAATGC------AAATTGCATC-C-C--GGTCC-TTATTT-TAAAACTAATTTTGATGAAAA
gi|3 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagTAGGTCATAGTAA---ATTAATTCT-T---TTTTCATCaagaattaatttactatgacctaatatttatttta
gi|4 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagtttatgatgatttgtttcctttcatgtttagtacaatgtgacacttccattttaatatatgaaaatataaaaaaatgcaaattgcatcccggtccttattttaaaactaattttTAGGCCATAAAAG---ATTAATCCA-TAGATTTTCATCCCCA-T-C-GCCCCTGG--GGTTT-TTTTACTCGCCCCAACATATTT-AATTGTC----TTGTTCTGATACCA--GTTTTTCTTAATGGGAATT---TACCAAA---ATG-------------G------A--------------TTT-T-----------------------GA-----T-----------T-----------T--T--------------C-------------TTTCT-T---TTC----ATG------CCT--AATAC-----AACACTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--TAA-TA-------GAATGGCATCGC-C--CGTCA-CTGTAT-TGAAGCAAATTTCAATGAAAAatatttatttta
gi|5 : AGGCCGTAATAGTAGGTTAATCCC-TAGATTTTCATCTCAG-TTC-ACTCCCGTTTA-TTT-ATTTACCTGCCCTGACATATTT-TATTGTC----
gi|5 : gccatc---ACG-------------G------G--------------TTTAT-----------------------GA-----T-----------A-----------T--C--------------C-------------TTTCA-T---TTC----CTG------ACC--AATAC-----GACACTT----C------ATTA----TCTGACAA-AT--------aaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatacgggtttatgatatcctttcatttcctgaccaatacgacacttcattatctgacaaat
gi|6 : gccatcaggccgtaatagtaggttaatccctagattttcatctcagttcactcccgtttatttatttacctgccctgacatattttattgtcaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatat-----------T--T--------------C-------------TTTCA-T---TAC----GTG------CCT--AATAG-----GACACTT----CC-TTT--------------AAA-AT--------AAA--CAA-TACTAGTATAAATTGCACC-T-T--CACCT-CTATAG-TGAAACACATCTACATGAAAA
gi|6 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagAGGCCATAATGA---ATTAATTCC-TAGATTTTCATtctaggaattaattcattatggccttatcatg
gi|7 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagttctttcattacgtgcctaataggacacttcctttaaaataaacaatactagtataaattgcaccttcacctctatagtgaaacacatctacTGTAATT---TGCTGAA---ACA-------------GC-----ACCATGATTTAAACCTTT-T-----------------------GA-----T-----------C-----------T--TTAATTAAATTTGTTC-------------TTTCA-T---CTT----ATT------CTT--AATAC-----AACATTT----CCGTCCTACTA----TCTAAAAT-ATATAGATTAAAA--AAG-AA-------AAATTACATC-CAC--CCT----TATTT-CTAAACAAATTAAGATGAAAAtatcatg
gi|7 : atttgtgacaatggaagttcATAATCA---ATAAATTCC-TAGATTTTCATCtctaggaatttattgattat
gi|8 : atttgtgacaatggaagttctgtaatttgctgaaacagcaccatgatttaaaccttttgatctttaattaaatttgttctttcatcttattcttaatacaacatttccgtcctactatctaaaatatatagattaaaaaagaaaaattacatccacccttatttctaaacaaattaa--AATCGTAATTATTTGCCAAA---ATGCTGCTGCATTGTAAC-----A--------------TTT-T-----------------------GA-----T-----------CTTTAAATAACGT--T--------------C-------------TTTCA-A---TTC----ATG------CTT--AATAC-----AACACTT----CTATTTAAATG----TCTG---------------AAG--AAA-TA-------AAATTGCATC-C-C--CCTC--CTATTT-TAAAATAAATTTGCATAAAA
gi|9 : tattttttacaatggAGTCCATAATAA---CTTAATTCC-TATAATTTTATCCCTG-T-CTGCCCCTGA---------TTTACCCTTCC--ACA------TATTGCC----TTGTCCTGAT--CATGGATTTTT----TTATAATT---TGTCAAAATGACG-------------GC-----ACCACTTATTAAAC-TTT-T-----------------------GA-----T-----------T-----------T--T--------------TATAATGATTTTTGTTTCA-T---TTC----ATG------TCT--AATAT-----GACATCT----CCTTTTTAATA----TCtataggaattaattatatggtctaatatg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 11111 33333333333333333333333333333333333333333333333 1111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 11111111 1111111 222222222222
lowQualScore : 444 2 1 1 33333 2 77777 4 0 55 3 7777 66666666666666666666666666666666666666666666666 555 0000000 999999 555 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 333 4444 000000 22 55555 4444 66 4444 4 44444444 33 0000000 444 2 888888888888 2 0 0
lowQualScore : ... . . . ..... . ..... . . .. . .... ............................................... ... ....... ...... ... .............................................................................................................................................. . ... .... ...... .. ..... .... .. .... . ........ .. ....... ... . ............ . . .
lowQualScore : 444 5 4 9 11111 7 00000 4 1 33 3 1111 33333333333333333333333333333333333333333333333 888 8888888 666666 444 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 777 5555 555555 99 33333 2222 44 5555 4 11111111 44 6666666 777 7 111111111111 7 9 6
consensus : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------CAAC---AGG-------AA-----T----C--GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCAC---C-C-C--CGT-C-C-TATTT-TGAAACAAATTTGGATGAAAA
Reference ( family-525 ) : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------TAAC---AGG-------AA-----T----T--GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCAC---C-C-C--CNT-C-C-TATTT-TGAAACAAATTTGGATGAAAA
gi|1 : AGGCCATAATGA---ATTAATTCC-TTCATTTTCACCAACG-C---GCCCTAGA--T-TTTCTTTTACGTGTCCAAACATATTT-TAT---------TGTCAAGC-AAAAAAAATTAACTAAAGG-------AA-----CAAAAC--ATAATT---TGCTTGACACCATATTTCAA---AC---------------C--------------------TTT------------------------T-----------------------GAACTGTAAATAAA--------T-T--T--------------C-------------TTTCA-T---TTC----AT---------T--A-TAT-----GACACTT----CTGTTTTAATA----TCTAAAAA-A---------AAATTATATA-------TAATTGCAC---C-CTC--TGT-CGC-TTTTT-TGATGAAAATCT--ATGAAA
gi|1 : ctataTAGACCATGATAT---ATTAATTTCATAGATTTTCATCttaatatatcatggtctaagtttgatttta
gi|10 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttA--------T-----------G-T--T--------------C-------------TTTCA-T---TTC----ATA------CCT--AATAC-----AATA-TT----TCATTTTAATATCTGTCTGAAAT-AT--------AAA--AGTTA-------AAATTACAC---C-C-T--TTT-------TTT-T-AAACAAATTTAGATGAAagtttgatttta
gi|10 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattCCATAATAA---ATTAATTCC-CAACTGTTCATCcagttgggaattaatttattatgg
gi|11 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattatgttctttcatttcatacctaatacaatatttcattttaatatctgtctgaaatataaaagttaaaattacacccttttttttaaacaaatttaA-------CAAC---AG--------AA-----T----T--TTTATT---TGC-------CA------AA---ACA-------------AC-----A--------------TTT------------------------T-----------------------GA--------TCTTAAAATGATT-T--T--------------C-------------TTTTA-T---T-C----ATG------TCT--AATAG-----GACACTT----CGATTTTAATA----TCTGAAAA-ATAA------AAA--AAATA-------AAATTG-AC---C-C-C--TGA-C-CATATTT-TA----AAATTGGGATGAAAA
gi|11 : tttcttttatttttCATAATGA---GTGAATTCT-TAGTTTTTCATCCCactaagaattcactcattatg
gi|12 : tttcttttatttttacaacagaatttttatttgccaaaacaacattttgatcttaaaatgattttcttttattcatgtctaataggacacttcgattttaatatctgaaaaataaaaaaaataaaattgacccctgaccatattttaaaattATATATTT-T-TTATT----TT-T-------A-------TAAC----GG-------AA-----T----T--GTAATT---TGC-------CA------AG---ACG-------------GCGCCGCA--------------TTT------------------------T-----------------------AACAT-----T-----------T-TGAT--------------C-------------TTTTAAT---GTC----AAT------CCT--AAAAC-----GATGTTT----CCGTTTTAATA----CCTG-AAA-AT--------A--------------------TACACAGGT-C--------C-C-TATTT-TGAAACATAATTGGATAAAAA
gi|13 : ttC-----A--------------TTT------------------------T-----------------------GA--------TCTTTAAAATA-T-T--T--------------C-------------TTTCA-T---TGC----ATG------CCT--AACAT-----GATACTT----CGGTTTTGAGA----TCTCAAAATAT--------TAA--AAAAA-------AAAATGCAC---C-C-C--CACAT-C-TATTT-GGAAACAAATTTGAATGAAAAtttaggaattcatttgtt
gi|14 : cattttaaaATTT-TATTGTC----ATCTC---C--A-------GAAT---GGG-------AA-----T----T--GCAATT---TGT-------CT------AA---GCT-------------GT-----T--------------TTT------------------------T-----------------------AA--------C-----------T-T--T-----------------------------TTGA-T---CTTTAAAATGATTT--TCT----TAT-----GACATTT----T-GTTTTGATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGGAC---C-C-C--TGC-C-CATATTG-CAAAAAAAAggtaagatttaaatcatcttggcctta
gi|15 : CAAATTTGTATT-TT----TTG-------GA-------CAAC---AGG-------AA-----C----C--ATAATT---TGC-------CA------AA---ACA-------------GCGCCGAA--------------TTT------------------------TTCAACCTTTTGAATCTTTAAAATGA--------T-----------T-T--T--------------C-------------ATTCA-T---ATC----ATG------CTT--AATAC-----GACATTTCCTACCATTCTAATA----TCTGAAAA-aaaatta
gi|16 : tttttattAATT---TGC-------CA------TA---ACGACACC--------GC-----A--------------TTT------------------------A-----------------------AAACCTT---T-----------TGT--T--------------C-------------TTT-A-TAAATTT----ATGAGTTTTCCTTTACTAC-----AACACTT----CTGTTTTAATA----TCTGAAAA-AT--------AAA--
gi|17 : gtccagattgcaaataaaattacattttacaaccagaacccAGGCCGTAATAA---ATTAATTCC-TA-ACTT--------------GCCCTGAT--A-TTT-TTT-ACCCTACCCAATATATTT-TATTGTCAAAATTGT-------A-------CAAT---AGA-------AA-----C----T--GTAATT---TGC-------CA------AA---ATG-------------gt
gi|18 : aagccaata------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------CTCAA-T---TTT----GTG------CCT--AATAT-----GACACTA----C-------AT-----TCTAAAAA-CT--------GA-------A-------AAATTGCAG---C-C-C--CTG-C-CATAGTTATGAAATATAATTGGATGAAAAcaccatctttatgccaacattttgatc
gi|18 : atgtttaaaCCATCATAA---ATTAATTCC-TAGATTTTCATCCtctaggaattaatttatgatggacatata
gi|19 : atgtttaaatgattttcctcaattttgtgcctaatatgacactacattctaaaaactgaaaaattgcagcccctgccatagttatgaaatataattTAGGCCATGA------AT-GCTTCC-TCAATTTTCATCTCCA-CTC-ACCCCC-A--A-TTT-ATTTACCCGCGCCAATATATTT-TATTATC----acatata
gi|2 : gagttacagcctggcgtaatttAGGCCATAATAA---ATTCGTTCG-TAGAATTTCCTGCCGG-C-CTGCCCCTGT--A-TTT-TTTTACCCACACCAACATATTT-TATTGa
gi|2 : ------------------------T-----------------------GA--------T-----------T-C--T--------------C-------------TTTAA-T---TTT----AGT------TCT--AATAC-----TACATTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAAattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaatgattctctttaattttagttctaatactacatttccattttaatatctgaaaaataaaaaataaaaatt
gi|20 : aggccataataaattcgttcgtagaatttcctgccggcctgcccctgtatttttttacccacaccaacatattttattgattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaa------------------------T-----------------------GA--------T-----------T-T-----------------C-------------TTTCA-A---TTC----ATG------CTC--AATGC-----AACAA-------CG-----------------AAA-AC--------AAA--AAAC------------TGCAC---C-A-T--C---C-C-TATTT-TTAAACAAATTTGGATAAAAAatt
gi|21 : tttaaaCTT----TTGTTTTAATA----TCTGAGAA-AT--------AAA--AAATA-------AAATTGCAC---C----------C-C-TGTTT-TGCAACAAATTTGGATGAAAAtctaggaa
gi|22 : aaaagcATAA---ATTACTTCC-TAGATTTTCTTCCCCACC-C-GCTCCTGT--A---T-TTTTACACGCTCCAACATAATT-AATTGTC----GTGTC---C-tctgatctaggaatt
gi|23 : AATG-------AAATTGCAG---C-C-CAGCTT-C---TACTT-TGAAACAAGTTTGGATAAAAAaggta
gi|23 : TGGACCATAATAA---ATGAATTCC-TTCATTTTTATCCtgaaggaattcatttattatggtccaatatgtt
gi|24 : aatgaaattgcagcccagcttctactttgaaacaagtttATTGTCATCCCTG-CGC-ACCACCGTT-A-TTT-TTTGACATGCCGTGAAATATTT-TACTGTC----atatgtt
gi|25 : ------------------------T-----------------------GA--------G-----------T-A--T--------------C-------------TTTCA-T---TTC----ATG------CAT--AATAT-----GACACTT----Caaaaacaa
gi|3 : ttaaaacatgttgatctttaaa-GA-------CAGC---AGG-------AT-----C----T--ATAATT---TGC-------CA------AA---AAGATGTT--------GC-----A--------------TTTTAAACCTTTTGACCTTAAAGTTTAT-----------------------GA--------TGA---------T-T--T--------------G-------------TTTCC-T---TTC----ATG------TTT--AGTACAATGTGACACTT----CCATTTTAATA----TATGAAAATATA-------AAA--AAATGC------AAATTGCAT---C-C-C--GGT-C-CTTATTT-TAAAACTAATTTTGATGAAAA
gi|3 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttTAGGTCATAGTAA---ATTAATTCT-T---TTTTCATCaagaattaatttactatgacctaatatttatttta
gi|4 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagtttatgatgatttgtttcctttcatgtttagtacaatgtgacacttccattttaatatatgaaaatataaaaaaatgcaaattgcatcccggtccttattttaaaactaattttTAGGCCATAAAAG---ATTAATCCA-TAGATTTTCATCCCCA-T-C-GCCCCTGG--GGTTT-TTTTACTCGCCCCAACATATTT-AATTGTC----TTGTT---CTGA-------TACC---AGTTTTTCTTAA-----T----G--GGAATT---TAC-------CA------AA---ATG-------------G------A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCT-T---TTC----ATG------CCT--AATAC-----AACACTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--TAATA-------GAATGGCAT---CGC-C--CGT-CAC-TGTAT-TGAAGCAAATTTCAATGAAAAatatttatttta
gi|5 : AGGCCGTAATAGTAGGTTAATCCC-TAGATTTTCATCTCAG-TTC-ACTCCCGTTTA-TTT-ATTTACCTGCCCTGACATATTT-TATTGTC----
gi|5 : gccatc---ACG-------------G------G--------------TTTA-----------------------T-----------------------GA--------T-----------A-T--C--------------C-------------TTTCA-T---TTC----CTG------ACC--AATAC-----GACACTT----C------ATTA----TCTGACAA-AT--------aaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatacgggtttatgatatcctttcatttcctgaccaatacgacacttcattatctgacaaat
gi|6 : gccatcaggccgtaatagtaggttaatccctagattttcatctcagttcactcccgtttatttatttacctgccctgacatattttattgtcaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatat-T--T--------------C-------------TTTCA-T---TAC----GTG------CCT--AATAG-----GACACTT----CC-TTT--------------AAA-AT--------AAA--CAATACTAGTATAAATTGCAC---C-T-T--CAC-CTC-TATAG-TGAAACACATCTACATGAAAA
gi|6 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagAGGCCATAATGA---ATTAATTCC-TAGATTTTCATtctaggaattaattcattatggccttatcatg
gi|7 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagttctttcattacgtgcctaataggacacttcctttaaaataaacaatactagtataaattgcaccttcacctctatagtgaaacacatctac----TTGT------GA-------CAAT---GGA-------AG-----T----TCTGTAATT---TGC-------TG------AA---ACA-------------GC-----ACCATGATTTAAACCTTT------------------------T-----------------------GA--------T-----------C-T--TTAATTAAATTTGTTC-------------TTTCA-T---CTT----ATT------CTT--AATAC-----AACATTT----CCGTCCTACTA----TCTAAAAT-ATATAGATTAAAA--AAGAA-------AAATTACAT---C-C-A--CC--C-T-TATTT-CTAAACAAATTAAGATGAAAAtatcatg
gi|7 : atATAATCA---ATAAATTCC-TAGATTTTCATCtctaggaatttattgattat
gi|8 : atttgtgacaatggaagttctgtaatttgctgaaacagcaccatgatttaaaccttttgatctttaattaaatttgttctttcatcttattcttaatacaacatttccgtcctactatctaaaatatatagattaaaaaagaaaaattacatccacccttatttctaaacaaattaaGG-------AA-----T----C--GTAATTATTTGC-------CA------AA---ATGCTGCTGCATTGTAAC-----A--------------TTT------------------------T-----------------------GA--------T-----------C-T--TTAAATAACGTT---C-------------TTTCA-A---TTC----ATG------CTT--AATAC-----AACACTT----CTATTTAAATG----TCTGAAGA-A----------------ATA-------AAATTGCAT---C-C-C--CCT-C-C-TATTT-TAAAATAAATTTGCATAAAA
gi|9 : tattttttacaatAGTCCATAATAA---CTTAATTCC-TATAATTTTATCCCTGTC-T-GCCCCTGA---------TTTACCCTTCC--ACA------TATTGCC----TTGTC---CTGA-------T--C---ATG-------GATTTTTT----T--ATAATT---TGT-------CA------AAATGACG-------------GC-----ACCACTTATTAAAC-TTT------------------------T-----------------------GA--------T-----------T-T--T--------------TATAATGATTTTTGTTTCA-T---TTC----ATG------TCT--AATAT-----GACATCT----CCTTTTTAATA----TCtataggaattaattatatggtctaatatg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 11111 33333333333333333333333333333333333333333333333 1111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 11111111 1111111 22222222222
lowQualScore : 444 2 1 1 33333 2 77777 4 0 55 3 7777 88888888888888888888888888888888888888888888888 555 0000000 999999 555 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 333 4444 000000 22 55555 4444 66 4444 4 44444444 33 0000000 2 2 33333333333 2 0
lowQualScore : ... . . . ..... . ..... . . .. . .... ............................................... ... ....... ...... ... .............................................................................................................................................. . ... .... ...... .. ..... .... .. .... . ........ .. ....... . . ........... . .
lowQualScore : 444 5 4 9 11111 7 00000 4 1 33 3 1111 77777777777777777777777777777777777777777777777 888 8888888 666666 444 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 777 5555 555555 99 33333 2222 44 5555 4 11111111 44 6666666 7 7 00000000000 7 6
consensus : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------CAAC---AGG-------AA-----T----C-GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CCG-T-C-C-TATTT-TGAAACAAATTTGGATGAAAA
Reference ( family-525 ) : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------CAAC---AGG-------AA-----T----C-GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CCG-T-C-C-TATTT-TGAAACAAATTTGGATGAAAA
gi|1 : AGGCCATAATGA---ATTAATTCC-TTCATTTTCACCAACG-C---GCCCTAGA--T-TTTCTTTTACGTGTCCAAACATATTT-TAT---------TGTCAAGC-AAAAAAAATTAACTAAAGG-------AA-----CAAAAC-ATAATT---TGCTTGACACCATATTTCAA---AC---------------C--------------------TTT------------------------T-----------------------GAACTGTAAATAAA--------T-T--T--------------C-------------TTTCA-T---TTC----AT---------T--A-TAT-----GACACTT----CTGTTTTAATA----TCTAAAAA-A---------AAATTATATA-------TAATTGCA-CC-CTCTG-T-CGC-TTTTT-TGATGAAAATCT--ATGAAA
gi|1 : ctataTAGACCATGATAT---ATTAATTTCATAGATTTTCATCttaatatatcatggtctaagtttgatttta
gi|10 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttA--------T-----------G-T--T--------------C-------------TTTCA-T---TTC----ATA------CCT--AATAC-----AATA-TT----TCATTTTAATATCTGTCTGAAAT-AT--------AAA--AGTTA-------AAATTACA-CC---------C-T-TTTTT-TTAAACAAATTTAGATGAAagtttgatttta
gi|10 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattCCATAATAA---ATTAATTCC-CAACTGTTCATCcagttgggaattaatttattatgg
gi|11 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattatgttctttcatttcatacctaatacaatatttcattttaatatctgtctgaaatataaaagttaaaattacacccttttttttaaacaaatttaA-------CAAC---AG--------AA-----T----T-TTTATT---TGC-------CA------AA---ACA-------------AC-----A--------------TTT------------------------T-----------------------GA--------TCTTAAAATGATT-T--T--------------C-------------TTTTA-T---T-C----ATG------TCT--AATAG-----GACACTT----CGATTTTAATA----TCTGAAAA-ATAA------AAA--AAATA-------AAATTG-A-CC-C-CTG-A-C-CATATTT-TA----AAATTGGGATGAAAA
gi|11 : tttcttttatttttCATAATGA---GTGAATTCT-TAGTTTTTCATCCCactaagaattcactcattatg
gi|12 : tttcttttatttttacaacagaatttttatttgccaaaacaacattttgatcttaaaatgattttcttttattcatgtctaataggacacttcgattttaatatctgaaaaataaaaaaaataaaattgacccctgaccatattttaaaattATATATTT-T-TTATT----TT-T-------A-------TAAC----GG-------AA-----T----T-GTAATT---TGC-------CA------AG---ACG-------------GCGCCGCA--------------TTT------------------------T-----------------------AACAT-----T-----------T-TGAT--------------C-------------TTTTAAT---GTC----AAT------CCT--AAAAC-----GATGTTT----CCGTTTTAATA----CCTGAAAA--------------------------------TATA-CA-C-AGG-TCC-C-TATTT-TGAAACATAATTGGATAAAAA
gi|13 : ttC-----A--------------TTT------------------------T-----------------------GA--------TCTTTAAAATA-T-T--T--------------C-------------TTTCA-T---TGC----ATG------CCT--AACAT-----GATACTT----CGGTTTTGAGA----TCTCAAAATAT--------TAA--AAAAA-------AAAATGCA-CC-C-CCA-CAT-C-TATTT-GGAAACAAATTTGAATGAAAAtttaggaattcatttgtt
gi|14 : cattttaaaATTT-TATTGTC----ATCTC---C--A-------GAAT---GGG-------AA-----T----T-GCAATT---TGT-------CT------AA---GCT-------------GT-----T--------------TTT------------------------T-----------------------AA--------C-----------T-T--T-----------------------------TTGA-T---CTTTAAAATGATTT--TCT----TAT-----GACATTT----T-GTTTTGATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGGA-CC-C-CTG-C-C-CATATTG-CAAAAAAAAggtaagatttaaatcatcttggcctta
gi|15 : CAAATTTGTATT-TT----TTG-------GA-------CAAC---AGG-------AA-----C----C-ATAATT---TGC-------CA------AA---ACA-------------GCGCCGAA--------------TTT------------------------TTCAACCTTTTGAATCTTTAAAATGA--------T-----------T-T--T--------------C-------------ATTCA-T---ATC----ATG------CTT--AATAC-----GACATTTCCTACCATTCTAATA----TCTGAAAA-aaaatta
gi|16 : tttttattA-------CAAC---CAG-------AA-----C----C--CAATT---TGC-------CA------TA---ACGACACC--------GC-----A--------------TTT------------------------A-----------------------AAACCTT---T-----------TGT--T--------------C-------------TTT-A-TAAATTT----ATGAGTTTTCCTTTACTAC-----AACACTT----CTGTTTTAATA----TCTGAAAA-AT--------AAA--
gi|17 : gtccagattgcaaataaaattacattttAGGCCGTAATAA---ATTAATTCC-TA-ACTT--------------GCCCTGAT--A-TTT-TTT-ACCCTACCCAATATATTT-TATTGTCAAAATTGT-------A-------CAAT---AGA-------AA-----C----T-GTAATT---TGC-------CA------AA---ATG-------------gt
gi|18 : aagccaata------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------CTCAA-T---TTT----GTG------CCT--AATAT-----GACACTA----C-------AT-----TCTAAAAA-CT--------GA-------A-------AAATTGCAGCC-C-CTG-C-C-A-TAGTTATGAAATATAATTGGATGAAAAcaccatctttatgccaacattttgatc
gi|18 : atgtttaaaCCATCATAA---ATTAATTCC-TAGATTTTCATCCtctaggaattaatttatgatggacatata
gi|19 : atgtttaaatgattttcctcaattttgtgcctaatatgacactacattctaaaaactgaaaaattgcagcccctgccatagttatgaaatataattTAGGCCATGA------AT-GCTTCC-TCAATTTTCATCTCCA-CTC-ACCCCC-A--A-TTT-ATTTACCCGCGCCAATATATTT-TATTATC----acatata
gi|2 : gagttacagcctggcgtaatttAGGCCATAATAA---ATTCGTTCG-TAGAATTTCCTGCCGG-C-CTGCCCCTGT--A-TTT-TTTTACCCACACCAACATATTT-TATTGa
gi|2 : ------------------------T-----------------------GA--------T-----------T-C--T--------------C-------------TTTAA-T---TTT----AGT------TCT--AATAC-----TACATTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAAattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaatgattctctttaattttagttctaatactacatttccattttaatatctgaaaaataaaaaataaaaatt
gi|20 : aggccataataaattcgttcgtagaatttcctgccggcctgcccctgtatttttttacccacaccaacatattttattgattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaa------------------------T-----------------------GA--------T-----------T-T-----------------C-------------TTTCA-A---TTC----ATG------CTC--AATGC-----AACAA-------CG-----------------AAA-AC--------AAA--AAAC------------TGCA-CC-A-TC----C-C-TATTT-TTAAACAAATTTGGATAAAAAatt
gi|21 : tttaaaCTT----TTGTTTTAATA----TCTGAGAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CTG---------TTT-TGCAACAAATTTGGATGAAAAtctaggaa
gi|22 : aaaagcATAA---ATTACTTCC-TAGATTTTCTTCCCCACC-C-GCTCCTGT--A---T-TTTTACACGCTCCAACATAATT-AATTGTC----GTGTC---C-tctgatctaggaatt
gi|23 : AATG-------AAATTGCA-GC-C-CAGCT-T-C-TACTT-TGAAACAAGTTTGGATAAAAAaggta
gi|23 : TGGACCATAATAA---ATGAATTCC-TTCATTTTTATCCtgaaggaattcatttattatggtccaatatgtt
gi|24 : aatgaaattgcagcccagcttctactttgaaacaagtttATTGTCATCCCTG-CGC-ACCACCGTT-A-TTT-TTTGACATGCCGTGAAATATTT-TACTGTC----atatgtt
gi|25 : ------------------------T-----------------------GA--------G-----------T-A--T--------------C-------------TTTCA-T---TTC----ATG------CAT--AATAT-----GACACTT----Caaaaacaa
gi|3 : ttaaaacatgttgatctttaaa-GA-------CAGC---AGG-------AT-----C----T-ATAATT---TGC-------CA------AA---AAGATGTT--------GC-----A--------------TTTTAAACCTTTTGACCTTAAAGTTTAT-----------------------GA--------TGA---------T-T--T--------------G-------------TTTCC-T---TTC----ATG------TTT--AGTACAATGTGACACTT----CCATTTTAATA----TATGAAAATATA-------AAA--AAATGC------AAATTGCA-TC-C-CGG-T-C-CTTATTT-TAAAACTAATTTTGATGAAAA
gi|3 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttTAGGTCATAGTAA---ATTAATTCT-T---TTTTCATCaagaattaatttactatgacctaatatttatttta
gi|4 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagtttatgatgatttgtttcctttcatgtttagtacaatgtgacacttccattttaatatatgaaaatataaaaaaatgcaaattgcatcccggtccttattttaaaactaattttTAGGCCATAAAAG---ATTAATCCA-TAGATTTTCATCCCCA-T-C-GCCCCTGG--GGTTT-TTTTACTCGCCCCAACATATTT-AATTGTC----TTGTT---CTGA-------TACC---AGTTTTTCTTAA-----T----G-GGAATT---TAC-------CA------AA---ATG-------------G------A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCT-T---TTC----ATG------CCT--AATAC-----AACACTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--TAATA-------GAATGGCA-TCGC-CCG-T-CAC-TGTAT-TGAAGCAAATTTCAATGAAAAatatttatttta
gi|5 : AGGCCGTAATAGTAGGTTAATCCC-TAGATTTTCATCTCAG-TTC-ACTCCCGTTTA-TTT-ATTTACCTGCCCTGACATATTT-TATTGTC----
gi|5 : gccatc---ACG-------------G------G--------------TTTA-----------------------T-----------------------GA--------T-----------A-T--C--------------C-------------TTTCA-T---TTC----CTG------ACC--AATAC-----GACACTT----C------ATTA----TCTGACAA-AT--------aaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatacgggtttatgatatcctttcatttcctgaccaatacgacacttcattatctgacaaat
gi|6 : gccatcaggccgtaatagtaggttaatccctagattttcatctcagttcactcccgtttatttatttacctgccctgacatattttattgtcaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatat-T--T--------------C-------------TTTCA-T---TAC----GTG------CCT--AATAG-----GACACTT----CC-TTT--------------AAA-AT--------AAA--CAATACTAGTATAAATTGCA-CC-T-TCA-C-CTC-TATAG-TGAAACACATCTACATGAAAA
gi|6 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagAGGCCATAATGA---ATTAATTCC-TAGATTTTCATtctaggaattaattcattatggccttatcatg
gi|7 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagttctttcattacgtgcctaataggacacttcctttaaaataaacaatactagtataaattgcaccttcacctctatagtgaaacacatctac----TTGT------GA-------CAAT----GG-------AAGT---T----CTGTAATT---TGC-------TG------AA---ACA-------------GC-----ACCATGATTTAAACCTTT------------------------T-----------------------GA--------T-----------C-T--TTAATTAAATTTGTTC-------------TTTCA-T---CTT----ATT------CTT--AATAC-----AACATTT----CCGTCCTACTA----TCTAAAAT-ATATAGATTAAAA--AAGAA-------AAATTACA-TC-CACC----C-T-TATTT-CTAAACAAATTAAGATGAAAAtatcatg
gi|7 : atATAATCA---ATAAATTCC-TAGATTTTCATCtctaggaatttattgattat
gi|8 : atttgtgacaatggaagttctgtaatttgctgaaacagcaccatgatttaaaccttttgatctttaattaaatttgttctttcatcttattcttaatacaacatttccgtcctactatctaaaatatatagattaaaaaagaaaaattacatccacccttatttctaaacaaattaaA-------CAAT----GG-------AA-----T----C-GTAATTATTTGC-------CA------AA---ATGCTGCTGCATTGTAAC-----A--------------TTT------------------------T-----------------------GA--------T-----------C-T--TTAAATAACGTT---C-------------TTTCA-A---TTC----ATG------CTT--AATAC-----AACACTT----CTATTTAAATG----TCTGAAGA-A----------------ATA-------AAATTGCA-TC-C-CCC-T-C-C-TATTT-TAAAATAAATTTGCATAAAA
gi|9 : tattttttAGTCCATAATAA---CTTAATTCC-TATAATTTTATCCCTGTC-T-GCCCCTGA---------TTTACCCTTCC--ACA------TATTGCC----TTGTC---CTGA-------T--C---ATG-------GATTTTTT----T-ATAATT---TGT-------CA------AAATGACG-------------GC-----ACCACTTATTAAAC-TTT------------------------T-----------------------GA--------T-----------T-T--T--------------TATAATGATTTTTGTTTCA-T---TTC----ATG------TCT--AATAT-----GACATCT----CCTTTTTAATA----TCtataggaattaattatatggtctaatatg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 11111 33333333333333333333333333333333333333333333333 1111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 11111111 1111111 22222222222
lowQualScore : 444 2 1 1 33333 2 77777 4 0 55 3 7777 88888888888888888888888888888888888888888888888 555 0000000 999999 555 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 333 4444 000000 22 55555 4444 66 4444 4 44444444 33 0000000 2 2 33333333333 2 0
lowQualScore : ... . . . ..... . ..... . . .. . .... ............................................... ... ....... ...... ... .............................................................................................................................................. . ... .... ...... .. ..... .... .. .... . ........ .. ....... . . ........... . .
lowQualScore : 444 5 4 9 11111 7 00000 4 1 33 3 1111 77777777777777777777777777777777777777777777777 888 8888888 666666 444 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 777 5555 555555 99 33333 2222 44 5555 4 11111111 44 6666666 7 7 00000000000 7 6
consensus : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------CAAC---AGG-------AA-----T----C-GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CCG-T-C-C-TATTT-TGAAACAAATTTGGATGAAAA
Reference ( family-525 ) : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------CAAC---AGG-------AA-----T----C-GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CCG-T-C-C-TATTT-TGAAACAAATTTGGATGAAAA
gi|1 : AGGCCATAATGA---ATTAATTCC-TTCATTTTCACCAACG-C---GCCCTAGA--T-TTTCTTTTACGTGTCCAAACATATTT-TAT---------TGTCAAGC-AAAAAAAATTAACTAAAGG-------AA-----CAAAAC-ATAATT---TGCTTGACACCATATTTCAA---AC---------------C--------------------TTT------------------------T-----------------------GAACTGTAAATAAA--------T-T--T--------------C-------------TTTCA-T---TTC----AT---------T--A-TAT-----GACACTT----CTGTTTTAATA----TCTAAAAA-A---------AAATTATATA-------TAATTGCA-CC-CTCTG-T-CGC-TTTTT-TGATGAAAATCT--ATGAAA
gi|1 : ctataTAGACCATGATAT---ATTAATTTCATAGATTTTCATCttaatatatcatggtctaagtttgatttta
gi|10 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttA--------T-----------G-T--T--------------C-------------TTTCA-T---TTC----ATA------CCT--AATAC-----AATA-TT----TCATTTTAATATCTGTCTGAAAT-AT--------AAA--AGTTA-------AAATTACA-CC---------C-T-TTTTT-TTAAACAAATTTAGATGAAagtttgatttta
gi|10 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattCCATAATAA---ATTAATTCC-CAACTGTTCATCcagttgggaattaatttattatgg
gi|11 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattatgttctttcatttcatacctaatacaatatttcattttaatatctgtctgaaatataaaagttaaaattacacccttttttttaaacaaatttaA-------CAAC---AG--------AA-----T----T-TTTATT---TGC-------CA------AA---ACA-------------AC-----A--------------TTT------------------------T-----------------------GA--------TCTTAAAATGATT-T--T--------------C-------------TTTTA-T---T-C----ATG------TCT--AATAG-----GACACTT----CGATTTTAATA----TCTGAAAA-ATAA------AAA--AAATA-------AAATTG-A-CC-C-CTG-A-C-CATATTT-TA----AAATTGGGATGAAAA
gi|11 : tttcttttatttttCATAATGA---GTGAATTCT-TAGTTTTTCATCCCactaagaattcactcattatg
gi|12 : tttcttttatttttacaacagaatttttatttgccaaaacaacattttgatcttaaaatgattttcttttattcatgtctaataggacacttcgattttaatatctgaaaaataaaaaaaataaaattgacccctgaccatattttaaaattATATATTT-T-TTATT----TT-T-------A-------TAAC----GG-------AA-----T----T-GTAATT---TGC-------CA------AG---ACG-------------GCGCCGCA--------------TTT------------------------T-----------------------AACAT-----T-----------T-TGAT--------------C-------------TTTTAAT---GTC----AAT------CCT--AAAAC-----GATGTTT----CCGTTTTAATA----CCTGAAAA--------------------------------TATA-CA-C-AGG-TCC-C-TATTT-TGAAACATAATTGGATAAAAA
gi|13 : ttC-----A--------------TTT------------------------T-----------------------GA--------TCTTTAAAATA-T-T--T--------------C-------------TTTCA-T---TGC----ATG------CCT--AACAT-----GATACTT----CGGTTTTGAGA----TCTCAAAATAT--------TAA--AAAAA-------AAAATGCA-CC-C-CCA-CAT-C-TATTT-GGAAACAAATTTGAATGAAAAtttaggaattcatttgtt
gi|14 : cattttaaaATTT-TATTGTC----ATCTC---C--A-------GAAT---GGG-------AA-----T----T-GCAATT---TGT-------CT------AA---GCT-------------GT-----T--------------TTT------------------------T-----------------------AA--------C-----------T-T--T-----------------------------TTGA-T---CTTTAAAATGATTT--TCT----TAT-----GACATTT----T-GTTTTGATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGGA-CC-C-CTG-C-C-CATATTG-CAAAAAAAAggtaagatttaaatcatcttggcctta
gi|15 : CAAATTTGTATT-TT----TTG-------GA-------CAAC---AGG-------AA-----C----C-ATAATT---TGC-------CA------AA---ACA-------------GCGCCGAA--------------TTT------------------------TTCAACCTTTTGAATCTTTAAAATGA--------T-----------T-T--T--------------C-------------ATTCA-T---ATC----ATG------CTT--AATAC-----GACATTTCCTACCATTCTAATA----TCTGAAAA-aaaatta
gi|16 : tttttattA-------CAAC---CAG-------AA-----C----C--CAATT---TGC-------CA------TA---ACGACACC--------GC-----A--------------TTT------------------------A-----------------------AAACCTT---T-----------TGT--T--------------C-------------TTT-A-TAAATTT----ATGAGTTTTCCTTTACTAC-----AACACTT----CTGTTTTAATA----TCTGAAAA-AT--------AAA--
gi|17 : gtccagattgcaaataaaattacattttAGGCCGTAATAA---ATTAATTCC-TA-ACTT--------------GCCCTGAT--A-TTT-TTT-ACCCTACCCAATATATTT-TATTGTCAAAATTGT-------A-------CAAT---AGA-------AA-----C----T-GTAATT---TGC-------CA------AA---ATG-------------gt
gi|18 : aagccaata------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------CTCAA-T---TTT----GTG------CCT--AATAT-----GACACTA----C-------AT-----TCTAAAAA-CT--------GA-------A-------AAATTGCAGCC-C-CTG-C-C-A-TAGTTATGAAATATAATTGGATGAAAAcaccatctttatgccaacattttgatc
gi|18 : atgtttaaaCCATCATAA---ATTAATTCC-TAGATTTTCATCCtctaggaattaatttatgatggacatata
gi|19 : atgtttaaatgattttcctcaattttgtgcctaatatgacactacattctaaaaactgaaaaattgcagcccctgccatagttatgaaatataattTAGGCCATGA------AT-GCTTCC-TCAATTTTCATCTCCA-CTC-ACCCCC-A--A-TTT-ATTTACCCGCGCCAATATATTT-TATTATC----acatata
gi|2 : gagttacagcctggcgtaatttAGGCCATAATAA---ATTCGTTCG-TAGAATTTCCTGCCGG-C-CTGCCCCTGT--A-TTT-TTTTACCCACACCAACATATTT-TATTGa
gi|2 : ------------------------T-----------------------GA--------T-----------T-C--T--------------C-------------TTTAA-T---TTT----AGT------TCT--AATAC-----TACATTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAAattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaatgattctctttaattttagttctaatactacatttccattttaatatctgaaaaataaaaaataaaaatt
gi|20 : aggccataataaattcgttcgtagaatttcctgccggcctgcccctgtatttttttacccacaccaacatattttattgattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaa------------------------T-----------------------GA--------T-----------T-T-----------------C-------------TTTCA-A---TTC----ATG------CTC--AATGC-----AACAA-------CG-----------------AAA-AC--------AAA--AAAC------------TGCA-CC-A-TC----C-C-TATTT-TTAAACAAATTTGGATAAAAAatt
gi|21 : tttaaaCTT----TTGTTTTAATA----TCTGAGAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CTG---------TTT-TGCAACAAATTTGGATGAAAAtctaggaa
gi|22 : aaaagcATAA---ATTACTTCC-TAGATTTTCTTCCCCACC-C-GCTCCTGT--A---T-TTTTACACGCTCCAACATAATT-AATTGTC----GTGTC---C-tctgatctaggaatt
gi|23 : AATG-------AAATTGCA-GC-C-CAGCT-T-C-TACTT-TGAAACAAGTTTGGATAAAAAaggta
gi|23 : TGGACCATAATAA---ATGAATTCC-TTCATTTTTATCCtgaaggaattcatttattatggtccaatatgtt
gi|24 : aatgaaattgcagcccagcttctactttgaaacaagtttATTGTCATCCCTG-CGC-ACCACCGTT-A-TTT-TTTGACATGCCGTGAAATATTT-TACTGTC----atatgtt
gi|25 : ------------------------T-----------------------GA--------G-----------T-A--T--------------C-------------TTTCA-T---TTC----ATG------CAT--AATAT-----GACACTT----Caaaaacaa
gi|3 : ttaaaacatgttgatctttaaa-GA-------CAGC---AGG-------AT-----C----T-ATAATT---TGC-------CA------AA---AAGATGTT--------GC-----A--------------TTTTAAACCTTTTGACCTTAAAGTTTAT-----------------------GA--------TGA---------T-T--T--------------G-------------TTTCC-T---TTC----ATG------TTT--AGTACAATGTGACACTT----CCATTTTAATA----TATGAAAATATA-------AAA--AAATGC------AAATTGCA-TC-C-CGG-T-C-CTTATTT-TAAAACTAATTTTGATGAAAA
gi|3 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttTAGGTCATAGTAA---ATTAATTCT-T---TTTTCATCaagaattaatttactatgacctaatatttatttta
gi|4 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagtttatgatgatttgtttcctttcatgtttagtacaatgtgacacttccattttaatatatgaaaatataaaaaaatgcaaattgcatcccggtccttattttaaaactaattttTAGGCCATAAAAG---ATTAATCCA-TAGATTTTCATCCCCA-T-C-GCCCCTGG--GGTTT-TTTTACTCGCCCCAACATATTT-AATTGTC----TTGTT---CTGA-------TACC---AGTTTTTCTTAA-----T----G-GGAATT---TAC-------CA------AA---ATG-------------G------A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCT-T---TTC----ATG------CCT--AATAC-----AACACTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--TAATA-------GAATGGCA-TCGC-CCG-T-CAC-TGTAT-TGAAGCAAATTTCAATGAAAAatatttatttta
gi|5 : AGGCCGTAATAGTAGGTTAATCCC-TAGATTTTCATCTCAG-TTC-ACTCCCGTTTA-TTT-ATTTACCTGCCCTGACATATTT-TATTGTC----
gi|5 : gccatc---ACG-------------G------G--------------TTTA-----------------------T-----------------------GA--------T-----------A-T--C--------------C-------------TTTCA-T---TTC----CTG------ACC--AATAC-----GACACTT----C------ATTA----TCTGACAA-AT--------aaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatacgggtttatgatatcctttcatttcctgaccaatacgacacttcattatctgacaaat
gi|6 : gccatcaggccgtaatagtaggttaatccctagattttcatctcagttcactcccgtttatttatttacctgccctgacatattttattgtcaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatat-T--T--------------C-------------TTTCA-T---TAC----GTG------CCT--AATAG-----GACACTT----CC-TTT--------------AAA-AT--------AAA--CAATACTAGTATAAATTGCA-CC-T-TCA-C-CTC-TATAG-TGAAACACATCTACATGAAAA
gi|6 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagAGGCCATAATGA---ATTAATTCC-TAGATTTTCATtctaggaattaattcattatggccttatcatg
gi|7 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagttctttcattacgtgcctaataggacacttcctttaaaataaacaatactagtataaattgcaccttcacctctatagtgaaacacatctac----TTGT------GA-------CAAT----GG-------AAGT---T----CTGTAATT---TGC-------TG------AA---ACA-------------GC-----ACCATGATTTAAACCTTT------------------------T-----------------------GA--------T-----------C-T--TTAATTAAATTTGTTC-------------TTTCA-T---CTT----ATT------CTT--AATAC-----AACATTT----CCGTCCTACTA----TCTAAAAT-ATATAGATTAAAA--AAGAA-------AAATTACA-TC-CACC----C-T-TATTT-CTAAACAAATTAAGATGAAAAtatcatg
gi|7 : atATAATCA---ATAAATTCC-TAGATTTTCATCtctaggaatttattgattat
gi|8 : atttgtgacaatggaagttctgtaatttgctgaaacagcaccatgatttaaaccttttgatctttaattaaatttgttctttcatcttattcttaatacaacatttccgtcctactatctaaaatatatagattaaaaaagaaaaattacatccacccttatttctaaacaaattaaA-------CAAT----GG-------AA-----T----C-GTAATTATTTGC-------CA------AA---ATGCTGCTGCATTGTAAC-----A--------------TTT------------------------T-----------------------GA--------T-----------C-T--TTAAATAACGTT---C-------------TTTCA-A---TTC----ATG------CTT--AATAC-----AACACTT----CTATTTAAATG----TCTGAAGA-A----------------ATA-------AAATTGCA-TC-C-CCC-T-C-C-TATTT-TAAAATAAATTTGCATAAAA
gi|9 : tattttttAGTCCATAATAA---CTTAATTCC-TATAATTTTATCCCTGTC-T-GCCCCTGA---------TTTACCCTTCC--ACA------TATTGCC----TTGTC---CTGA-------T--C---ATG-------GATTTTTT----T-ATAATT---TGT-------CA------AAATGACG-------------GC-----ACCACTTATTAAAC-TTT------------------------T-----------------------GA--------T-----------T-T--T--------------TATAATGATTTTTGTTTCA-T---TTC----ATG------TCT--AATAT-----GACATCT----CCTTTTTAATA----TCtataggaattaattatatggtctaatatg
blockSeqs : TAG A G C CTC G TTTA . CA G AAAA TCTGATACCAGTTTTTCTTAATGG ATT . . ATG ATGTTGCATTTTAAACCTTTTGACCTTAAAGTTTATGATGATTTG A AAA TAAA AGTTTT TT AATGT CCTA CA TCTG T ATAGATTA . CTAGTAT G G CTGACCA A
blockSeqs : . . A G CCT C TTA . CA . . CCTGATCATGGATTTTTTTA . . . . GCGCCGAATTTTTCAACCTTTTGAATCTTTAAAATGATTTTC . . . ATTT . . . GA . T AA . C . . AGGTCCC .
blockSeqs : . . G C CCC T GGG . CA . . GACAATGGAAGTTCTG . . . . GCACCATGATTTAAACCTTTTGATCTTTAATTAAATTTGTTC . . . . . . . CG . . A . . . . CCACATC .
blockSeqs : . . G T CGC T TA . CA . . CCAGAATGGGAATTG . . . . GCACCACTTATTAAACTTTTGATTTTTATAATGATTTTTG . . . . . . . GG . . . . . . . CTGCCCA .
blockSeqs : . . A C TTC C AA . TG . . GACAACAGGAACCA . . . . CTGCTGCATTGTAACATTTTGATCTTTAAATAACGTTC . . . . . . . CA . . . . . . . CAGCTTC .
blockSeqs : . . G A TCT T TA . CA . . ACAATAGAAACTG . . . . ACATTTTGATCTTAAAATGATTTTC . . . . . . . TG . . . . . . . CGGTCCT .
blockSeqs : . . G T TC C TA . TG . . ATAACGGAATTG . . . . ACACCGCATTTAAAACCTTTTGTTC . . . . . . . CA . . . . . . . CCGTCAC .
blockSeqs : . . C . . T A . . . . . . . . GCGCCGCATTTTAACATTTTGATC . . . . . . . CG . . . . . . . TCACCTC .
blockSeqs : . . G . . . . . . GGTTTATGATATCC . . . . . . . TG . . . . . . . CTGCCA .
blockSeqs : . . G . . . . . . GTTTTTTAACTTT . . . . . . . CA . . . . . . . CCCTCC .
blockSeqs : . . G . . . . . . GATTTTGATTTTC . . . . . . . CA . . . . . . . ACCCT .
blockSeqs : . . G . . . . . . . . CG . . . . . . . TCCC .
blockSeqs : . . T . . . . . . . TA . . . . . . . CTG .
blockSeqs : . . . . . . . . . . CT . . . . . . . CT .
blockSeqs : . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . . C . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : .
blockSeqCons : CCC** NCACAACGGAACTG********************************* ******* ****** ** CCGCCCC****
originalCons : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCG-C-C-GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTC---C-GA-------CAAC---AGG-------AA-----T----C-GTAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCA-CC-C-CCG-T-C-C-TATTT-TGAAACAAATTTGGATGAAAA
finalCons : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCGCCC--GCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTNCACAACGGAACTG---------------------------------TAATT---TGC-------CA------AA---ACG-------------GC-----A--------------TTT------------------------T-----------------------GA--------T-----------T-T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAATA-------AAATTGCA-CC-CCCGCCCC----TATTT-TGAAACAAATTTGGATGAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 33333333333333333333333333333333333333333333333333 11111 1111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11111111 1111111
lowQualScore : 444 2 1 1 99 2 77777 4 0 55 2 3 5555 11111111111111111111111111111111111111111111111111 0 33333 0000000 888888 555 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 333 4444 000000 22 55555 4444 66 4444 4 11111111 33 2 0000000 44 2 2 3 0 0
lowQualScore : ... . . . .. . ..... . . .. . . .... .................................................. . ..... ....... ...... ... .................................................................................................................................................................. . ... .... ...... .. ..... .... .. .... . ........ .. . ....... .. . . . . .
lowQualScore : 444 5 4 9 33 7 00000 4 1 33 9 8 3333 00000000000000000000000000000000000000000000000000 7 11111 0000000 888888 000 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 777 5555 555555 99 33333 2222 44 5555 4 88888888 44 5 6666666 22 7 7 7 3 6
consensus : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCGCCCGCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTN---C--A--------CAAC----GG--------A----A---C----CGTAATT-----TGC-------CA------AA---AC------G-------------GC-----A--------------TTT------------------------T-----------------------GA-----------T-----------T-----------T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAATTGCA-CC-C-CCGCCCCTATTTTGAAACAAATTTGGATGAAAA
Reference ( family-525 ) : TAGGCCATAATAA---ATTAATTCC-TAGATTTTCATCCCCGCCCGCCCCCGN--A-TTT-TTTTACCCGCCCCGACATATTT-TATTGTC----TTGTN---C--A--------CAAC----GG--------A----A---C----TGTAATT-----TGC-------CA------AA---AC------G-------------GC-----A--------------TTT------------------------T-----------------------GA-----------T-----------T-----------T--T--------------C-------------TTTCA-T---TTC----ATG------CCT--AATAC-----GACACTT----CCGTTTTAATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAATTGCA-CC-C-CCGCCCCTATTTTGAAACAAATTTGGATGAAAA
gi|1 : AGGCCATAATGA---ATTAATTCC-TTCATTTTCACCAACGC--GCCCTAGA--T-TTTCTTTTACGTGTCCAAACA------TATTTTA----TTGTCAAGC--AAAAAAAATTAACTAAAGG--------A----A---CAAAACATAATT-----TGCTTGACACCATATTTCAA---AC---------------------C--------------------TTT------------------------T-----------------------GAACTGTAAA---TAAA--------T-----------T--T--------------C-------------TTTCA-T---TTC----AT---------T--A-TAT-----GACACTT----CTGTTTTAATA----TCTAAAAA-A---------AAATTATA-TA-------TAATTGCA-CC-CTCTGTCGCTTTTTTGATGAAAATCT--ATGAAA
gi|1 : ctataTAGACCATGATAT---ATTAATTTCATAGATTTTCATCttaatatatcatggtctaagtttgatttta
gi|10 : ctataaggccataatgaattaattccttcattttcaccaacgcgccctagattttcttttacgtgtccaaacatattttattgtcaagcaaaaaaaattaactaaaggaacaaaacataatttgcttgacaccatatttcaaaccttttgaactgtaaataaatttctttcatttcattatatgacacttctgttttaatatctaaaaaaaaattatatataattgcaccctctgtcgcttttttA-----------T-----------G-----------T--T--------------C-------------TTTCA-T---TTC----ATA------CCT--AATAC-----AATA-TT----TCATTTTAATATCTGTCTGAAAT-AT--------AAA--AGT-TA-------AAATTACA---------CCCTTTTTTTTAAACAAATTTAGATGAAagtttgatttta
gi|10 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattCCATAATAA---ATTAATTCC-CAACTGTTCATCcagttgggaattaatttattatgg
gi|11 : ttttttttactacaggactgttatttgcaaaaaaagacgctgtattataaaccatctggtctttaaattatgttctttcatttcatacctaatacaatatttcattttaatatctgtctgaaatataaaagttaaaattacacccttttttttaaacaaatttaTTT-TATT----------TT---T--A--------CAAC----AG--------A----A---T----TTTTATT-----TGC-------CA------AA---AC------A-------------AC-----A--------------TTT------------------------T-----------------------GA-----------TCTTAAAATGATT-----------T--T--------------C-------------TTTTA-T---T-C----ATG------TCT--AATAG-----GACACTT----CGATTTTAATA----TCTGAAAA-ATAA------AAA--AAA-TA-------AAATTG-A-CC-C-CTGACCATATTTTA----AAATTGGGATGAAAA
gi|11 : tttcCATAATGA---GTGAATTCT-TAGTTTTTCATCCCactaagaattcactcattatg
gi|12 : tttcttttatttttacaacagaatttttatttgccaaaacaacattttgatcttaaaatgattttcttttattcatgtctaataggacacttcgattttaatatctgaaaaataaaaaaaataaaattgacccctgaccatattttaaaattATATATTT-T-TTATT----TT------T--A--------TAAC----GG--------A----A---T----TGTAATT-----TGC-------CA------AG---AC------G-------------GCGCCGCA--------------TTT------------------------T-----------------------AACAT--------T-----------T-----------TGAT--------------C-------------TTTTAAT---GTC----AAT------CCT--AAAAC-----GATGTTT----CCGTTTTAATA----CCTGAAAA---------------------------------TATA-CA-C-AGGTCCCTATTTTGAAACATAATTGGATAAAAA
gi|13 : ttC-----A--------------TTT------------------------T-----------------------GA-----------TCTTTAAAATA-T-----------T--T--------------C-------------TTTCA-T---TGC----ATG------CCT--AACAT-----GATACTT----CGGTTTTGAGA----TCTCAAAATAT--------TAA--AAA-AA-------AAAATGCA-CC-C-CCACATCTATTTGGAAACAAATTTGAATGAAAAtttaggaattcatttgtt
gi|14 : cattttaaaATTT-TATTGTC----ATCTC---C--A--------GAAT----GGG-------A----A---T----TGCAATT-----TGT-------CT------AA---GC------T-------------GT-----T--------------TTT------------------------T-----------------------AA-----------C-----------T-----------T--T-----------------------------TTGA-T---CTTTAAAATGATTT--TCT----TAT-----GACATTT----T-GTTTTGATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAATTGGA-CC-C-CTGCCCATATTGCAAAAAAAAggtaagatttaaatcatcttggcctta
gi|15 : CAAATTTGTATT-------TTTTG---G--A--------CAACA---GG--------A----A---C----CATAATT-----TGC-------CA------AA---AC------A-------------GCGCCGAA--------------TTT------------------------TTCAACCTTTTGAATCTTTAAAATGA-----------T-----------T-----------T--T--------------C-------------ATTCA-T---ATC----ATG------CTT--AATAC-----GACATTTCCTACCATTCTAATA----TCTGAAAA-aaaatta
gi|16 : tttttattTT---T--A--------CAACC---AG--------A----A---C----C-CAATT-----TGC-------CA------TA---AC------GACACC--------GC-----A--------------TTT------------------------A-----------------------AAACCTT------T-----------TG----------T--T--------------C-------------TTT-A-TAAATTT----ATGAGTTTTCCTTTACTAC-----AACACTT----CTGTTTTAATA----TCTGAAAA-AT--------AAA--
gi|17 : gtccagattgcaaataaaattacatAGGCCGTAATAA---ATTAATTCC-TA-ACTT------------GCCCTGAT--A-TTT-TTT-ACCCTACCCAATATATTT-TATTGTCAAAATTGT-------A--------CAATA---GA--------A----A---C----TGTAATT-----TGC-------CA------AA---AT------G-------------gt
gi|18 : aagccaata------------------------T-----------------------GA-----------T-----------T-----------T--T--------------C-------------CTCAA-T---TTT----GTG------CCT--AATAT-----GACACTA----C-------AT-----TCTAAAAA-CT--------GA--------A-------AAATTGCAGCC-C-CTGCCATAGTTATGAAATATAATTGGATGAAAAcaccatctttatgccaacattttgatc
gi|18 : atgtttaaaCCATCATAA---ATTAATTCC-TAGATTTTCATCCtctaggaattaatttatgatggacatata
gi|19 : atgtttaaatgattttcctcaattttgtgcctaatatgacactacattctaaaaactgaaaaattgcagcccctgccatagttatgaaatataattTAGGCCATGA------AT-GCTTCC-TCAATTTTCATCTCCACTCACCCCC-A--A-TTT-ATTTACCCGCGCCAATATATTT-TATTATC----acatata
gi|2 : gagttacagcctggcgtaatttAGGCCATAATAA---ATTCGTTCG-TAGAATTTCCTGCCGGCCTGCCCCTGT--A-TTT-TTTTACCCACACCAACATATTT-TATTGa
gi|2 : ------------------------T-----------------------GA-----------T-----------T-----------C--T--------------C-------------TTTAA-T---TTT----AGT------TCT--AATAC-----TACATTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--AAA-TA-------AAAattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaatgattctctttaattttagttctaatactacatttccattttaatatctgaaaaataaaaaataaaaatt
gi|20 : aggccataataaattcgttcgtagaatttcctgccggcctgcccctgtatttttttacccacaccaacatattttattgattaaaaaggtttcgttgattgatcacatttttacggtggtctctattttgttcaaagctcacataagtcactcttaagcatcttacagcaccagttttaaacctctgatgattaaa------------------------T-----------------------GA-----------T-----------T-----------T-----------------C-------------TTTCA-A---TTC----ATG------CTC--AATGC-----AACAA-------CG-----------------AAA-AC--------AAA--AAA-C------------TGCA-CC-----ATCCCTATTTTTAAACAAATTTGGATAAAAAatt
gi|21 : tttaaaCTT----TTGTTTTAATA----TCTGAGAA-AT--------AAA--AAA-TA-------AAATTGCA-CC-C-CTG------TTTTGCAACAAATTTGGATGAAAAtctaggaa
gi|22 : aaaagcATAA---ATTACTTCC-TAGATTTTCTTCCCCACCCGCTCCTGT--A---T-TTTTACACGCTCCAACATAATT-AATTGTC----GTGTC---C--A--------tctgatctaggaatt
gi|23 : AA-TG-------AAATTGCA-GC-C-CAGCTTCTACTTTGAAACAAGTTTGGATAAAAAggta
gi|23 : TGGACCATAATAA---ATGAATTCC-TTCATTTTTATCCtgaaggaattcatttattatggtccaatatgtt
gi|24 : aatgaaattgcagcccagcttctactttgaaacaagtttATTGTCATCCCTGCGCACCACCGTT-A-TTT-TTTGACATGCCGTGAAATATTT-TACTGTC----atatgtt
gi|25 : ------------------------T-----------------------GA-----------G-----------T-----------A--T--------------C-------------TTTCA-T---TTC----ATG------CAT--AATAT-----GACACTT----Caaaaacaa
gi|3 : ttaaaacatgttgatctttaaaGTT----TTG--------A--------CAGCA---GG--------A----T---C----TATAATT-----TGC-------CA------AA---AA------GATGTT--------GC-----A--------------TTTTAAACCTTTTGACCTTAAAGTTTAT-----------------------GA-----------TGA---------T-----------T--T--------------G-------------TTTCC-T---TTC----ATG------TTT--AGTACAATGTGACACTT----CCATTTTAATA----TATGAAAATAT--------AAA--AAAATGC------AAATTGCA-TC-C-CGGTCCTTATTTTAAAACTAATTTTGATGAAAA
gi|3 : ccagaaaaaaaaacaaaaagtaaaaaaaaTAGGTCATAGTAA---ATTAATTCT-T---TTTTCATCaagaattaatttactatgacctaatatttatttta
gi|4 : ccagaaaaaaaaacaaaaagtaaaaaaaagttttgacagcaggatctataatttgccaaaaagatgttgcattttaaaccttttgaccttaaagtttatgatgatttgtttcctttcatgtttagtacaatgtgacacttccattttaatatatgaaaatataaaaaaatgcaaattgcatcccggtccttattttaaaactaattttTAGGCCATAAAAG---ATTAATCCA-TAGATTTTCATCCCCATC-GCCCCTGG--GGTTT-TTTTACTCGCCCCAACATATTT-AATTGTC----TTGTT---CTGA--------TACC----AGTTTTTCTTA----A---T----GGGAATT-----TAC-------CA------AA---AT------G-------------G------A--------------TTT------------------------T-----------------------GA-----------T-----------T-----------T--T--------------C-------------TTTCT-T---TTC----ATG------CCT--AATAC-----AACACTT----CCATTTTAATA----TCTGAAAA-AT--------AAA--TAA-TA-------GAATGGCA-TCGC-CCGTCACTGTATTGAAGCAAATTTCAATGAAAAatatttatttta
gi|5 : AGGCCGTAATAGTAGGTTAATCCC-TAGATTTTCATCTCAGTTCACTCCCGTTTA-TTT-ATTTACCTGCCCTGACATATTT-TATTGTC----
gi|5 : gccatc---AC------G-------------G------G--------------TTTA-----------------------T-----------------------GA-----------T-----------A-----------T--C--------------C-------------TTTCA-T---TTC----CTG------ACC--AATAC-----GACACTT----C------ATTA----TCTGACAA-AT--------aaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatacgggtttatgatatcctttcatttcctgaccaatacgacacttcattatctgacaaat
gi|6 : gccatcaggccgtaatagtaggttaatccctagattttcatctcagttcactcccgtttatttatttacctgccctgacatattttattgtcaaaaataagatctttttaaaaaaaaaaatggggaaaacatcacccgattttaaactttttgatatT-TATT-TT----TTGGG---G--A--------CGTC----AG--------A----A---C----CGTAATTAAATTTGC-------TA------AA---ACAGTGATG-------------GG-----A--------------TTT------------------------C-----------------------AAGCTTTTAGCTCT-----------TCAAATGAG---T--T--------------C-------------TTTCA-T---TAC----GTG------CCT--AATAG-----GACACTT----CC-TTT--------------AAA-AT--------AAA--CAA-TACTAGTATAAATTGCA-CC-T-TCACCTCTATAGTGAAACACATCTACATGAAAA
gi|6 : AGGCCATAATGA---ATTAATTCC-TAGATTTTCATtctaggaattaattcattatggccttatcatg
gi|7 : ttattttttggggacgtcagaaccgtaattaaatttgctaaaacagtgatgggatttcaagcttttagctcttcaaatgagttctttcattacgtgcctaataggacacttcctttaaaataaacaatactagtataaattgcaccttcacctctatagtgaaacacatctac----TTGTG------A--------CAAT----GG--------A----AGTTC----TGTAATT-----TGC-------TG------AA---AC------A-------------GC-----ACCATGATTTAAACCTTT------------------------T-----------------------GA-----------T-----------C-----------T--TTAATTAAATTTGTTC-------------TTTCA-T---CTT----ATT------CTT--AATAC-----AACATTT----CCGTCCTACTA----TCTAAAAT-ATATAGATTAAAA--AAG-AA-------AAATTACA----T-CCACCCTTATTTCTAAACAAATTAAGATGAAAAtatcatg
gi|7 : atATAATCA---ATAAATTCC-TAGATTTTCATCtctaggaatttattgattat
gi|8 : atttgtgacaatggaagttctgtaatttgctgaaacagcaccatgatttaaaccttttgatctttaattaaatttgttctttcatcttattcttaatacaacatttccgtcctactatctaaaatatatagattaaaaaagaaaaattacatccacccttatttctaaacaaattaa----TTTTT---T--A--------CAAT----GG--------A----A---T----CGTAATTATT--TGC-------CA------AA---AT------GCTGCTGCATTGTAAC-----A--------------TTT------------------------T-----------------------GA-----------T-----------CTTTAAATAACGT--T--------------C-------------TTTCA-A---TTC----ATG------CTT--AATAC-----AACACTT----CTATTTAAATG----TCTG---------------AAG--AAA-TA-------AAATTGCA-TC-C-CC-CTCCTATTTTAAAATAAATTTGCATAAAA
gi|9 : taAGTCCATAATAA---CTTAATTCC-TATAATTTTATCCCTGTCTGCCCCTGA---------TTTACCCTTCC--ACATATTG-CCTTGTC----CTGAT---C-------------AT----GG--------ATTTTT---T----TATAATT-----TGT-------CA------AAATGAC------G-------------GC-----ACCACTTATTAAAC-TTT------------------------T-----------------------GA-----------T-----------T-----------T--T--------------TATAATGATTTTTGTTTCA-T---TTC----ATG------TCT--AATAT-----GACATCT----CCTTTTTAATA----TCtataggaattaattatatggtctaatatg