lowQualScore : 1 1111111 111 1 999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111111111 11 111111 111 555 1
lowQualScore : 3 2 2 2 6 0 44 333 2 2 44 7777777 2 2 66 1 7 666 2 555 55 888 5 1 444 888888 888888888888888888888888888888888888888888888888888888888888888888888888888 44 7777777777777777 2 2 88 22 7 5 1 2 333 55 7 2 777777 6 000 888 6 99 1
lowQualScore : . . . . . . .. ... . . .. ....... . . .. . . ... . ... .. ... . . ... ...... ........................................................................... .. ................ . . .. .. . . . . ... .. . . ...... . ... ... . .. .
lowQualScore : 2 5 5 2 0 6 88 555 0 0 88 9999999 0 0 11 5 1 999 5 999 99 777 2 8 777 000000 444444444444444444444444444444444444444444444444444444444444444444444444444 22 6666666666666666 2 2 00 99 7 1 6 2 999 33 0 0 777777 0 555 000 8 00 2
consensus : TAAAAAGAGGG-GGT-GTTCACGCTAGTTTTTT--C---AT-AA-ATTCG-AA-----T-TCAA-AT-T-AAAAATGAAACACTT-AA---A-A--CAC--ACGACGTTTGCCTGCTATTTCGGACGA---C-----GTC------TAANNNAANNNCCNNNNGGNNNTTNNNTTGAACGNGANCGCNNNCGNNAGNANNNGNACGNCGNNTTTTT--AAGTGTT----------T----CA-TT-TT-A--ATTTGAATTCGAATTT-AT---G--AAAAAACTAGCGT---GAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
Reference ( gi|4 ) : TAAAAAGAAGG-GGT-GTTCACACCAGGTTTTT--C---AT-AA-ATTCG-AA-----A-TCAA-AT-T-AAAAATGAAACACTT-AA---A-A--CAC--ACAGTGTTTGCCTACTATTTCGTACGA---C-----ATC------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT--AAGTGTT----------T----GA-TT-TA-A--ATCTAAATTCAAATTT-AT---G--AAAAGACTAGTGT---TATCACCCCCTCTTTTTACTCGATCATATTTTTTAGTAAAATAAATAAAGTTTA
gi|1 : TAAAAAGAGGG-GGT-GTTCTCATTAGTTTTTT--C---AT-AA-ATTC--AG-----A-TTAACAT-T-GAAA-TCTAACACTA-AA---A-AAACAT--ACACCATTTGCTTGTGATTTTAGACAA---C-----GTC-------AAGTGAACGTCCCAATGATACTTACATTAAATACGAAGTCGTCCCCAACAGCAAACAAAGTGGTTTTTT--AAGTGTTGCATTTTAAAT----GA-TT-TA-A--A
gi|5 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgttaaacttcattcatttgactataatataactgaaTAAAAAGAGGATGAT-ATCCACGCTAGTTTTTT--C---AT-AA-ATTC----------------------AAAATAAAACACTTAAA---A-A--CAC--ACA---TT--CCAGCTATTTCAGACGATGTC-----ANN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT--AGGTGTT----------T---------------------AATTTAAATTT-AT---G--AAAAAACTAGCTT---GAACACCCCCACTTTTTaatgttataaaaaacaa
gi|7 : atttcatatacgttaaacttaatttaaccgaatatgaccgaaTAAAAAGAGGG-AGT-ATTCACACTAGTTTATTA-C---AT-AG-ATTT--AA-----A-TTAA-TA-T-AGAAATGAAACACTT-AA---A-A---AC--NNNNNNNNNNNNNNNNNNNNNNNNNNN---N-----NNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGACGTCGTTCGAAATAGCATGCAAACAACGT--A--TGTT----------TTCAAGG-TT-TT-A--ATGT-GATTCGAATTC-AT---G--AAAAAAt
gi|3 : TAAAAAGAAAG-TGT-GTTCACGTTAAGGTTTT--C---AT-AA-ATTTG-GA-----T-TTAA-AT-T--AAAATGAAACATTat
gi|2 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttaactttatcaatttcactaactataaacgaaTAAAAAGAGGG-AGT-GTTTACGCTAGTTTTTA--C---ATCAA-ACT
gi|14 : aaacaacaaaatcatatttattgacataattactgaatcatttaaggtagttcgcggcgatcctatcagatttttttacagctggcgtagattatcaaaaatctgtactacagatattggaactcttaactttcatttaagctttggtttttttttaaataacgtacagcagtttcttgttaaaacgttttacccgtgtaaataatcaatattgattcaaaattgtttttaataacatttatttattatattacttattttatttcctgtgatgagattataattttcatgcatataaagtacaatgtgtgtttacctttacatctaaccattacgccggtgttgatataagcgcaagtttaaaaaaaatgaacattcacggttgactgcgcgaaaaaactctgatacaagttttgaattttacacgttaaactttataaatttcactaaaatatttccgaaTAAAATGAAGG-GGT-GGCAACGCTATTGTTTT--C---AT-AA-ATTCG-AA-----T-TCAA-AT-T-AAAAACACAACgtataacggtgaaaatcgtctgaaaaacacgtaccgctagggggcgattttataaagagtctacaggacttta
gi|6 : aAAAAAGAGGG-GGT-GTTCACGCTA-TTTTTT--C---AT-CA-ATTTG-AA-----T-TTAA-AT-T--AATATTAAACACTT-AANNNN-N--NNN--NNNNNNNNNNNNNNNNNNNNNNNNNNN---N-----NNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGACGTCGCCCAAATCAGCAGACAAACGTCGTGTTTTT--AAGGGTT----------T----CATTT-TT-A--ATTTAAATTTGAATTA-AT---G--AAAAAACTAGTGT---GAACACCCCCTCTTTcgaaatcacaagcaatactgtgtt
gi|5 : AAAAAGTGGG-GGT-GTTCAAGCTAGTTTTTT--C---AT-AA-ATTT-------------AA-AT-T-AAA-------CACCT-AA---A-A--NNN--NNNNNNNNNNNNNNNNNNNNNNNNNNN---N-----NNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATCGTCTGAAATAGCTGGAATGTGTGTTTT-T--AAGTGTT----------T----TA-TT-T--------------TGAATTT-AT---G--AAAAAACTAGCGTGGATATCATCC--TCTTTTTATTCGGTCATA---TTCGGT----TAAATTAAGTTTA
gi|13 : atttcatatacgtAAAAAGAA----------TACATTAGTTTTTT--C---AT-AA-ATTCG-AA-----T-TCAA-AT-C-AAAAATGAAACCCTT-AA---A-A--CAC--GAA--GTTTATTCGCTATTTCGGACt
gi|19 : AAAACTAATG-TGT-ATTCACGCTAGTTTTTT--C---AT-AA-ATTCG-AATTCGGATTCAA-AT-T-AAAACTGAAAtt
gi|20 : cAAAAAATGA-GGT-GTTCACACTATTTTTTT--C---AT-GA-ATTCG-AA-----G-TTAA-AT-T--AAAGTGAAACAt
gi|6 : AAAGAGGG-GGT-GTTCACACTAGTTTTTT--C---AT-TA-ATTCA-AA-----T-TTAA-AT-T-AAAAATGAAACCCTT-AA---A-A---AC--ACGACGTTTGTCTGCTGATTTGGGCGA---C-----GTCGTNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT--AAGTGTT----------T----AA-TA-TT-A--ATTTAAATTCAAATTG-AT---G--AAAAAA-TAGCGT---GAACACCCCCTCTTTTT
gi|16 : AAAGA-GG-TGT-GTTCACGCTGTTTTTTT--C---AT-AA-TTTCG-AA-----A-TTAA-AT-T--AGAATGAAATACTT--A---A-A--CAA--ACA
gi|8 : gAGAGGG-GGT-GTTCACGCTAAATATTT--C---AT-AA-ATTCG-AA-----T-TCAA-AT-T-AAGAATGAAACACTT-AA---AGA--TAC--GCGACGTTTCCCTGCTATTTCGGACGA---C-----GTCG-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC--AAGTGTT----------T----CA-TT-TT-A--ATttccccctctttt
gi|9 : gAAAAGA-GCTAGTTCAAGGTAGTTTTTT--C---AT-GA-ATTTG-AA-----T-TTAA-AT-T-A-AAATCAAACACTT-t
gi|12 : ttAGG-GGT-GTTCACGCTAGTTTTTT--TTTTAT-AA-ATTCG-AA-----T-TCAA-ATAA-AAAAATGAAACAC----A---A-A--CAC--ACGACGTTCGCCTTTTGTTTTAGACAA---C-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgatgttatccaaaattgcaggcaaactt
gi|11 : tcACTCTAGTTTTTTGTC---AT-AA-ATTCG-AA-----T-TCAA-AT-T-AGAAAAGGAACACAC-AA---A-A--AACTGTCAACGTTTCCTTGCTATTTCGGACCA---C-----GTC------g
gi|1 : cgacgccaatatatacttacataaaatacGTTTTT--T---AT-AACATTTTTAA-----A-TCA---T-T-TAAAATGCAACACTT-AA---A-A--AACC-AC----TTTGTTTGCTGTTGGGGACGA---CTTCGTATT------TAATGTAAGTATCATTGGGACGTTCACTTGACGTTGTCTAAAATCACAAGCAAATGGTGTATGTTTTTTT--A-GTGTT----------A----GA-TT-TC-A--ATGTTAATCTGAATTT-AT---G--AAAAAACTAATGA---GAACACCCCCTCTTTTTATTCAGTTATA--TTATAGTCAAATGAATGAAGTTTAt
gi|18 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgtGTTTTT--C---AT-AA-ATTTG-AA-----T-TCTA-AT-TAAAAAATAATACACTTAAA---A-A--CAC--ACGACGTTTGCCATCTATTTCAAACTA---C-----GTaa
gi|7 : TTTTT--C---AT-GA-ATTCG-AA-------TCAC-AT-T-AAAA------C-CTTGAA---A-A--CAT--ACGTTGTTTGCATGCTATTTCGAACGA---C-----GTCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTT--AAGTGTT----------T----CA-TT-TC-T--ATATTAATTTAAATCT-AT---GT-AATAAACTAGTGT---GAATACTCCCTCTTTTTA
gi|8 : A-AT-T-AAAA-TGAAACACTT-GN---N-N--NNN--NNNNNNNNNNNNNNNNNNNNNNNNNNN---N-----NNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACGTCGTCCGAAATAGCAGGGAAACGTCGCGTATCTTTAAGTGTT----------T----CA-TTCTT-A--ATTTGAATTCGAATTT-AT---G--AAATATTTAGCGT---GAACACCCCCTCTaat
gi|15 : gAACACTA-AAC--A-A--CCA--ACGACGTTTGCCTACTATTTCAGACGA---T-----GTC------
gi|9 : acgttaagagaacgtcatatgatactaccttaaaatacGTTTGCCTGCAATTTTGGATAA---C-----ATC-------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AAGTGTT----------T----GA-TT-TT-A--ATTTAAATTCAAATTC-AT---G--AAAAAACTAac
gi|13 : ttaaaagagctagttcaaggT--AAGGGTT----------T----CA-TT-TTTG--ATTTGAATTCGAATTT-AT---G--AAAAAACTAATG----TAT-------TCTTTTTtt
gi|16 : gtccgaaatagcgaataaacttcgtgtttT--AAGTATT----------T----CA-TT-CT-A--ATTTAATTTCGAAATT-AT---G--AAAAAAACAGCGT---GAACA-CACCTCTTTtt
gi|3 : gAATGTT----------T----CA-TT-TT-A--ATTTAAATCCAAATTT-AT---G--AAAACCTTAACGT---GAACACACTTTCTTTTTATTCGTTTATA---GTTAGTGAAATTGATAAAGTTaacaaacattccccctctttt
gi|19 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttAGT-TT----------T----AA-TT-TG-A--ATCCGAATTCGAATTT-AT---G--AAAAAACTAGCGT---
gi|12 : caaaactaatgtgtattcGTGTT----------T----CA-TT-TT-TTTATTTGAATTCGAATTT-ATAAAA--AAAAAACTAGCGT---GAACACCCCgaaat
gi|20 : tcaTGTT----------T----CA-CT-TT-A--ATTTAACTTCGAATTC-AT---G--AAAAAAATAGTGT---GAACACCTCATTTTTTaaacacacgacgttcgccttttgttttagacaacg
gi|14 : GTTG---------T----GT-TT-TT-A--ATTTGAATTCGAATTT-AT---G--AAAACAATAGCGT---TGCCACCCCTTCATTTTA
gi|11 : a-A--ATTTGAATTCGAATTT-AT---GACAAAAAACTAGAGT---Tcgaaatcacaagcaatactgtgtt
gi|2 : cgacgccaatatatacttacataaaatacgacgtggtccgaaatagcaaggaaacgttgacagttttttgtgtgttccttttctAGTTTGAT---G--TAAAAACTAGCGT---AAACACTCCCTCTTTTTATTCGGAAATA--TTTTAGTGAAATTTATAAAGTTTA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTTAGGTTGATACAAACGCGGGTTTAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAA
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGTCTCATTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 0000000000000000000000000000000000000000000000000000000000000000000000000 111
lowQualScore : 6 55 666 3 3 666 3 3 3 3 11 88 2 8888888888888888888888888888888888888888888888888888888888888888888888888 5 0 0 7 3 3 0 0 1 777 0 22
lowQualScore : . .. ... . . ... . . . . .. .. . ......................................................................... . . . . . . . . . ... . ..
lowQualScore : 7 00 444 6 6 444 6 6 6 6 00 66 0 4444444444444444444444444444444444444444444444444444444444444444444444444 9 5 5 1 6 6 5 2 2 000 2 22
consensus : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTCGT----CGATGTAAGTATCATTGGGACGTTCACTTGANCGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
Reference ( family-490 ) : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC------TAANNNAANNNCCNNNNGGNNNTTNNNTTGAACGNGANC-GCNNNCGNNAGNANNNGNACGN-CGNNTTTTTAAGTGTTTCATTTTAATTTGAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
gi|1 : TTTTT--T---ATAACATT----TTTAAAT-CATTTAAAA-TGCAACACTT-AA-A-A-AACC-AC----TTTGTTTGCTGTTGGGGACGACTTCGTATT-TAATGTAAGTATCATTGGGACGTTCACTTGA-CGTTGTCTAAAATCACAAGCAAATGG-TGTATGTTTTTTTA-GTGTTAGATTTCAATGTTAATCTGAATTT-ATG-AAAAAACTAATGAGAACACCCCCTCTTTTTATTCAGTTATA--TTATAGTCAAATGAATGAAGTTTA
gi|11 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgtACTCTAGTTTTTTGTC---ATAA-ATTCGAATTCAAAT-TA---GAAA-AGGAACACAC-AA-A-A-AACTGTCAACGTTTCCTTGCTATTTCGGACCACGTC------caa
gi|12 : cgacgccaatatatacttacataaaatacGG-GGTGTTCACGCTAGTTTTTT--TTTTATAA-ATTCGAATTCAAATAAA---AAAA-TGAAACAC----A-A-A-CAC--ACGACGTTCGCCTTTTGTTTTAGACAACGt
gi|13 : tcaACATTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-CA---AAAA-TGAAACCCTT-AA-A----AC--ACGAAGTTTATTCGCTATTTCGGAC
gi|14 : TAAAATGAAGG-GGTGGCAACGCTATTGTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-CACAACattcttttttt
gi|15 : aAACACTA-AACA-A-CCA--ACGACGTTTGCCTACTATTTCAGACGATGTC------cgaaatcacaagcaatactgtgtt
gi|16 : acgttaagagaacgtcatatgatactaccttaaaatacGTTTGTTTAAGTATTTCATTCTAATTTAATTTCGAAATT-ATG-AAAAAAACAGCGTGAACA-CACCTCTTTac
gi|18 : gTTTTT--C---ATAA-ATTTGAATTCTAAT-TA---AAAAATAATACACTT-AA-A-AACAC--ACGACGTTTGCCATCTATTTCAAACTACGTattccccctctttt
gi|19 : TTTCAGT-TTTAATTTGAATCCGAATTCGAATTT-ATG-AAAAAACTAGCGTGAATACc
gi|2 : caaaactaatgtAGTTTGATG-TAAAAACTAGCGTAAACACTCCCTCTTTTTATTCGGAAATA--TTTTAGTGAAATTTATAAAGTTTAt
gi|20 : aaacaacaaaatcatatttattgacataattactgaatcatttaaggtagttcgcggcgatcctatcagatttttttacagctggcgtagattatcaaaaatctgtactacagatattggaactcttaactttcatttaagctttggtttttttttaaataacgtacagcagtttcttgttaaaacgttttacccgtgtaaataatcaatattgattcaaaattgtttttaataacatttatttattatattacttattttatttcctgtgatgagattataattttcatgcatataaagtacaatgtgtgtttacctttacatctaaccattacgccggtgttgatataagcgcaagtttaaaaaaaatgaacattcacggttgactgcgcgaaaaaactctgatacaagttttgaattttacacgtTGTTTCACTTTAATTTAACTTCGAATTC-ATG-AAAAAAATAGTGTGAACACCTCATTTTTTgtataacggtgaaaatcgtctgaaaaacacgtaccgctagggggcgattttataaagagtctacaggacttta
gi|3 : AATGTTTCATTTTAATTTAAATCCAAATTT-ATG-AAAACCTTAACGTGAACACACTTTCTTTTTATTCGTTTATA---GTTAGTGAAATTGATAAAGTT
gi|4 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttTAAAAAGAAGG-GGTGTTCACACCAGGTTTTT--C---ATAA-ATTCGAAATCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACAGTGTTTGCCTACTATTTCGTACGACATC------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNCTAAGTGTTTGATTTAAATCTAAATTCAAATTT-ATG-AAAAGACTAGTGTTATCACCCCCTCTTTTTACTCGATCATATTTTTTAGTAAAATAAATAAAGTTTA
gi|5 : TAAAAAGAGGATGATATCCACGCTAGTTTTTT--C---ATAA-ATTC----------------AAAA-TAAAACACTT-AA-A-A--AC--AC-ACATT--CCAGCTATTTCAGACGATGTCANN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNTTTTAGGTGTTT------------AATTTAAATTT-ATG-AAAAAACTAGCTTGAACACCCCCACTTTTT
gi|6 : atttcatatacgttaaacttaatttaaccgaatatgaccgaaAAAGAGGG-GGTGTTCACACTAGTTTTTT--C---ATTA-ATTCAAATTTAAAT-TA---AAAA-TGAAACCCTT-AA-A-A--AC--ACGACGTTTGTCTGCTGATTTGGGCGACGTCGTNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNTTAAGTGTTTAATATTAATTTAAATTCAAATTG-ATG-AAAAAA-TAGCGTGAACACCCCCTCTTTTTt
gi|7 : TTTTTT--C---ATGA-ATTCGAAT-CACAT-TA---AAA-------C-CTTGAA-A-A-CAT--ACGTTGTTTGCATGCTATTTCGAACGACGTCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNGTTTTTAAGTGTTTCATTTCTATATTAATTTAAATCT-ATGTAATAAACTAGTGTGAATACTCCCTCTTTTTA
gi|8 : AGAGGG-GGTGTTCACGCTAAATATTT--C---ATAA-ATTCGAATTCAAAT-TA---AGAA-TGAAACACTT-AA-AGA-TAC--GCGACGTTTCCCTGCTATTTCGGACGACGTCG-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNCAAGTGTTTCATTTTAATTat
gi|9 : gGTTTGCCTGCAATTTTGGATAACATC-------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNAAGTGTTTGATTTTAATTTAAATTCAAATTC-ATG-AAAAAACTACCTTGAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAGGTTGATACAAACGCGGGTTTAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAA
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGTCTCATTT
Alignments
lowQualScore : 11 4444444444444 11111 111
lowQualScore : 6 55 666 3 3 666 3 3 3 3 11 88 2 8888888888888 0 3 4 3 0 1 888 5 00000 0 2 0 3 3 0 0 1 777 0 22
lowQualScore : . .. ... . . ... . . . . .. .. . ............. . . . . . . ... . ..... . . . . . . . . ... . ..
lowQualScore : 7 00 444 6 6 444 6 6 6 6 00 66 0 8888888888888 3 1 4 1 1 8 999 7 11111 2 3 5 6 6 5 2 2 000 2 22
consensus : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T----TAATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
Reference ( family-490 ) : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T----CGATGTAAGTAT-CATTGGGACGTTCACTTGANCGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
gi|1 : TTTTT--T---ATAACATT----TTTAAAT-CATTTAAAA-TGCAACACTT-AA-A-A-AACC-AC----TTTGTTTGCTGTTGGGGACGACTTC-G----TATT-TAATGTAAGTAT-CATTGGGACGTTCACTTGA-CGTTGTCTAAAATCACAAGCAAATGG-TGTATGTTTTTTTA-GTGTTAGATTTCAATGTTAATCTGAATTT-ATG-AAAAAACTAATGAGAACACCCCCTCTTTTTATTCAGTTATA--TTATAGTCAAATGAATGAAGTTTA
gi|11 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgtACTCTAGTTTTTTGTC---ATAA-ATTCGAATTCAAAT-TA---GAAA-AGGAACACAC-AA-A-A-AACTGTCAACGTTTCCTTGCTATTTCGGACCACGTC-GTAT-T----TTATGTAAGTATATATTGGcaa
gi|12 : cgacgGG-GGTGTTCACGCTAGTTTTTT--TTTTATAA-ATTCGAATTCAAATAAA---AAAA-TGAAACAC----A-A-A-CAC--ACGACGTTCGCCTTTTGTTTTAGACAACGt
gi|13 : tcaACATTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-CA---AAAA-TGAAACCCTT-AA-A----AC--ACGAAGTTTATTCGCTATTTCGGAC
gi|14 : TAAAATGAAGG-GGTGGCAACGCTATTGTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-CACAACattcttttttt
gi|15 : aAACACTA-AACA-A-CCA--ACGACGTTTGCCTACTATTTCAGACGATGTC-GTATTT----TAAGGT-AGTAT-CA-TATGACGTTCTCTT-AACGTcgaaatcacaagcaatactgtgtt
gi|16 : -TGTTTGTTTAAGTATTTCATTCTAATTTAATTTCGAAATT-ATG-AAAAAAACAGCGTGAACA-CACCTCTTTac
gi|18 : gTTTTT--C---ATAA-ATTTGAATTCTAAT-TA---AAAAATAATACACTT-AA-A-AACAC--ACGACGTTTGCCATCTATTTCAAACTACGTttccccctctttt
gi|19 : TTTCAGT-TTTAATTTGAATCCGAATTCGAATTT-ATG-AAAAAACTAGCGTGAATACc
gi|2 : caaaactaatgtAGTTTGATG-TAAAAACTAGCGTAAACACTCCCTCTTTTTATTCGGAAATA--TTTTAGTGAAATTTATAAAGTTTAt
gi|20 : aaacaacaaaatcatatttattgacataattactgaatcatttaaggtagttcgcggcgatcctatcagatttttttacagctggcgtagattatcaaaaatctgtactacagatattggaactcttaactttcatttaagctttggtttttttttaaataacgtacagcagtttcttgttaaaacgttttacccgtgtaaataatcaatattgattcaaaattgtttttaataacatttatttattatattacttattttatttcctgtgatgagattataattttcatgcatataaagtacaatgtgtgtttacctttacatctaaccattacgccggtgttgatataagcgcaagtttaaaaaaaatgaacattcacggttgactgcgcgaaaaaactctgatacaagttttgaattttacacgtTGTTTCACTTTAATTTAACTTCGAATTC-ATG-AAAAAAATAGTGTGAACACCTCATTTTTTgtataacggtgaaaatcgtctgaaaaacacgtaccgctagggggcgattttataaagagtctacaggacttta
gi|3 : AATGTTTCATTTTAATTTAAATCCAAATTT-ATG-AAAACCTTAACGTGAACACACTTTCTTTTTATTCGTTTATA---GTTAGTGAAATTGATAAAGTT
gi|4 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttTAAAAAGAAGG-GGTGTTCACACCAGGTTTTT--C---ATAA-ATTCGAAATCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACAGTGTTTGCCTACTATTTCGTACGACATC-----------CAANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNCTAAGTGTTTGATTTAAATCTAAATTCAAATTT-ATG-AAAAGACTAGTGTTATCACCCCCTCTTTTTACTCGATCATATTTTTTAGTAAAATAAATAAAGTTTA
gi|5 : TAAAAAGAGGATGATATCCACGCTAGTTTTTT--C---ATAA-ATTC----------------AAAA-TAAAACACTT-AA-A-A--AC--AC-ACATT--CCAGCTATTTCAGACGATGTCAN----N----NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNTTTTAGGTG------TTTAATTTA------AATTT-ATG-AAAAAACTAGCTTGAACACCCCCACTTTTT
gi|6 : atttcatatacgttaaacttaatttaaccgaatatgaccgaaAAAGAGGG-GGTGTTCACACTAGTTTTTT--C---ATTA-ATTCAAATTTAAAT-TA---AAAA-TGAAACCCTT-AA-A-A--AC--ACGACGTTTGTCTGCTGATTTGGGCGACGTC-G----TNN--NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNTTAAGTGTTTAATATTAATTTAAATTCAAATTG-ATG-AAAAAA-TAGCGTGAACACCCCCTCTTTTTt
gi|7 : TTTTTT--C---ATGA-ATTCGAAT-CACAT-TA---AAA-------C-CTTGAA-A-A-CAT--ACGTTGTTTGCATGCTATTTCGAACGACGTC-G----TTTNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNGTTTTTAAGTGTTTCATTTCTATATTAATTTAAATCT-ATGTAATAAACTAGTGTGAATACTCCCTCTTTTTA
gi|8 : AGAGGG-GGTGTTCACGCTAAATATTT--C---ATAA-ATTCGAATTCAAAT-TA---AGAA-TGAAACACTT-AA-AGA-TAC--GCGACGTTTCCCTGCTATTTCGGACGACGTC-G---------NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNCAAGTGTTTCATTTTAATTat
gi|9 : gGTTTGCCTGCAATTTTGGATAACATC-G----N----NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNN---AAGTGTTTGATTTTAATTTAAATTCAAATTC-ATG-AAAAAACTACCTTGAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAGGTTGATACAAACGCGGGTTTAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAA
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGTCTCATTT
Alignments
lowQualScore : 11 444444444444444 11111 111
lowQualScore : 6 55 666 3 3 666 3 3 3 3 11 88 2 000000000000000 0 3 4 3 0 1 777 5 00000 0 2 0 3 3 0 0 1 777 0 22
lowQualScore : . .. ... . . ... . . . . .. .. . ............... . . . . . . ... . ..... . . . . . . . . ... . ..
lowQualScore : 7 00 444 6 6 444 6 6 6 6 00 66 0 222222222222222 3 1 4 1 1 0 666 7 11111 2 3 5 6 6 5 2 2 000 2 22
consensus : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T---T----AATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
Reference ( family-490 ) : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T---T----AATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
gi|1 : TTTTT--T---ATAACATT----TTTAAAT-CATTTAAAA-TGCAACACTT-AA-A-A-AACC-AC----TTTGTTTGCTGTTGGGGACGACTTC-G----TATTT----AATGTAAGTAT-CATTGGGACGTTCACTTGA-CGTTGTCTAAAATCACAAGCAAATGG-TGTATGTTTTTTTA-GTGTTAGATTTCAATGTTAATCTGAATTT-ATG-AAAAAACTAATGAGAACACCCCCTCTTTTTATTCAGTTATA--TTATAGTCAAATGAATGAAGTTTA
gi|11 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgtACTCTAGTTTTTTGTC---ATAA-ATTCGAATTCAAAT-TA---GAAA-AGGAACACAC-AA-A-A-AACTGTCAACGTTTCCTTGCTATTTCGGACCACGTC-GTAT-T---T----TATGTAAGTATATATTGGcaa
gi|12 : cgacgGG-GGTGTTCACGCTAGTTTTTT--TTTTATAA-ATTCGAATTCAAATAAA---AAAA-TGAAACAC----A-A-A-CAC--ACGACGTTCGCCTTTTGTTTTAGACAACGt
gi|13 : tcaACATTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-CA---AAAA-TGAAACCCTT-AA-A----AC--ACGAAGTTTATTCGCTATTTCGGAC
gi|14 : TAAAATGAAGG-GGTGGCAACGCTATTGTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-CACAACattcttttttt
gi|15 : aAACACTA-AACA-A-CCA--ACGACGTTTGCCTACTATTTCAGACGATGTC-GTATTT---T----AAGGT-AGTAT-CA-TATGACGTTCTCTT-AACGTcgaaatcacaagcaatactgtgtt
gi|16 : -TGTTTGTTTAAGTATTTCATTCTAATTTAATTTCGAAATT-ATG-AAAAAAACAGCGTGAACA-CACCTCTTTac
gi|18 : gTTTTT--C---ATAA-ATTTGAATTCTAAT-TA---AAAAATAATACACTT-AA-A-AACAC--ACGACGTTTGCCATCTATTTCAAACTACGTttccccctctttt
gi|19 : TTTCAGT-TTTAATTTGAATCCGAATTCGAATTT-ATG-AAAAAACTAGCGTGAATACc
gi|2 : caaaactaatgtAGTTTGATG-TAAAAACTAGCGTAAACACTCCCTCTTTTTATTCGGAAATA--TTTTAGTGAAATTTATAAAGTTTAt
gi|20 : aaacaacaaaatcatatttattgacataattactgaatcatttaaggtagttcgcggcgatcctatcagatttttttacagctggcgtagattatcaaaaatctgtactacagatattggaactcttaactttcatttaagctttggtttttttttaaataacgtacagcagtttcttgttaaaacgttttacccgtgtaaataatcaatattgattcaaaattgtttttaataacatttatttattatattacttattttatttcctgtgatgagattataattttcatgcatataaagtacaatgtgtgtttacctttacatctaaccattacgccggtgttgatataagcgcaagtttaaaaaaaatgaacattcacggttgactgcgcgaaaaaactctgatacaagttttgaattttacacgtTGTTTCACTTTAATTTAACTTCGAATTC-ATG-AAAAAAATAGTGTGAACACCTCATTTTTTgtataacggtgaaaatcgtctgaaaaacacgtaccgctagggggcgattttataaagagtctacaggacttta
gi|3 : AATGTTTCATTTTAATTTAAATCCAAATTT-ATG-AAAACCTTAACGTGAACACACTTTCTTTTTATTCGTTTATA---GTTAGTGAAATTGATAAAGTT
gi|4 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttTAAAAAGAAGG-GGTGTTCACACCAGGTTTTT--C---ATAA-ATTCGAAATCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACAGTGTTTGCCTACTATTTCGTACGACATC----------C----AANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNCTAAGTGTTTGATTTAAATCTAAATTCAAATTT-ATG-AAAAGACTAGTGTTATCACCCCCTCTTTTTACTCGATCATATTTTTTAGTAAAATAAATAAAGTTTA
gi|5 : TAAAAAGAGGATGATATCCACGCTAGTTTTTT--C---ATAA-ATTC----------------AAAA-TAAAACACTT-AA-A-A--AC--AC-ACATT--CCAGCTATTTCAGACGATGTCAN----N---N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNTTTTAGGTG------TTTAATTTA------AATTT-ATG-AAAAAACTAGCTTGAACACCCCCACTTTTT
gi|6 : atttcatatacgttaaacttaatttaaccgaatatgaccgaaAAAGAGGG-GGTGTTCACACTAGTTTTTT--C---ATTA-ATTCAAATTTAAAT-TA---AAAA-TGAAACCCTT-AA-A-A--AC--ACGACGTTTGTCTGCTGATTTGGGCGACGTC-G----TNN-N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNTTAAGTGTTTAATATTAATTTAAATTCAAATTG-ATG-AAAAAA-TAGCGTGAACACCCCCTCTTTTTt
gi|7 : TTTTTT--C---ATGA-ATTCGAAT-CACAT-TA---AAA-------C-CTTGAA-A-A-CAT--ACGTTGTTTGCATGCTATTTCGAACGACGTC-G----T---TTNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNGTTTTTAAGTGTTTCATTTCTATATTAATTTAAATCT-ATGTAATAAACTAGTGTGAATACTCCCTCTTTTTA
gi|8 : AGAGGG-GGTGTTCACGCTAAATATTT--C---ATAA-ATTCGAATTCAAAT-TA---AGAA-TGAAACACTT-AA-AGA-TAC--GCGACGTTTCCCTGCTATTTCGGACGACGTC-G--------N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNCAAGTGTTTCATTTTAATTat
gi|9 : gGTTTGCCTGCAATTTTGGATAACATC-G----N---N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNN---AAGTGTTTGATTTTAATTTAAATTCAAATTC-ATG-AAAAAACTACCTTGAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAGGTTGATACAAACGCGGGTTTAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAA
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGTCTCATTT
Alignments
lowQualScore : 11 444444444444444 11111 111
lowQualScore : 6 55 666 3 3 666 3 3 3 3 11 88 2 000000000000000 0 3 4 3 0 1 777 5 00000 0 2 0 3 3 0 0 1 777 0 22
lowQualScore : . .. ... . . ... . . . . .. .. . ............... . . . . . . ... . ..... . . . . . . . . ... . ..
lowQualScore : 7 00 444 6 6 444 6 6 6 6 00 66 0 222222222222222 3 1 4 1 1 0 666 7 11111 2 3 5 6 6 5 2 2 000 2 22
consensus : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T---T----AATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
Reference ( family-490 ) : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T---T----AATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
gi|1 : TTTTT--T---ATAACATT----TTTAAAT-CATTTAAAA-TGCAACACTT-AA-A-A-AACC-AC----TTTGTTTGCTGTTGGGGACGACTTC-G----TATTT----AATGTAAGTAT-CATTGGGACGTTCACTTGA-CGTTGTCTAAAATCACAAGCAAATGG-TGTATGTTTTTTTA-GTGTTAGATTTCAATGTTAATCTGAATTT-ATG-AAAAAACTAATGAGAACACCCCCTCTTTTTATTCAGTTATA--TTATAGTCAAATGAATGAAGTTTA
gi|11 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgtACTCTAGTTTTTTGTC---ATAA-ATTCGAATTCAAAT-TA---GAAA-AGGAACACAC-AA-A-A-AACTGTCAACGTTTCCTTGCTATTTCGGACCACGTC-GTAT-T---T----TATGTAAGTATATATTGGcaa
gi|12 : cgacgGG-GGTGTTCACGCTAGTTTTTT--TTTTATAA-ATTCGAATTCAAATAAA---AAAA-TGAAACAC----A-A-A-CAC--ACGACGTTCGCCTTTTGTTTTAGACAACGt
gi|13 : tcaACATTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-CA---AAAA-TGAAACCCTT-AA-A----AC--ACGAAGTTTATTCGCTATTTCGGAC
gi|14 : TAAAATGAAGG-GGTGGCAACGCTATTGTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-CACAACattcttttttt
gi|15 : aAACACTA-AACA-A-CCA--ACGACGTTTGCCTACTATTTCAGACGATGTC-GTATTT---T----AAGGT-AGTAT-CA-TATGACGTTCTCTT-AACGTcgaaatcacaagcaatactgtgtt
gi|16 : -TGTTTGTTTAAGTATTTCATTCTAATTTAATTTCGAAATT-ATG-AAAAAAACAGCGTGAACA-CACCTCTTTac
gi|18 : gTTTTT--C---ATAA-ATTTGAATTCTAAT-TA---AAAAATAATACACTT-AA-A-AACAC--ACGACGTTTGCCATCTATTTCAAACTACGTttccccctctttt
gi|19 : TTTCAGT-TTTAATTTGAATCCGAATTCGAATTT-ATG-AAAAAACTAGCGTGAATACc
gi|2 : caaaactaatgtAGTTTGATG-TAAAAACTAGCGTAAACACTCCCTCTTTTTATTCGGAAATA--TTTTAGTGAAATTTATAAAGTTTAt
gi|20 : aaacaacaaaatcatatttattgacataattactgaatcatttaaggtagttcgcggcgatcctatcagatttttttacagctggcgtagattatcaaaaatctgtactacagatattggaactcttaactttcatttaagctttggtttttttttaaataacgtacagcagtttcttgttaaaacgttttacccgtgtaaataatcaatattgattcaaaattgtttttaataacatttatttattatattacttattttatttcctgtgatgagattataattttcatgcatataaagtacaatgtgtgtttacctttacatctaaccattacgccggtgttgatataagcgcaagtttaaaaaaaatgaacattcacggttgactgcgcgaaaaaactctgatacaagttttgaattttacacgtTGTTTCACTTTAATTTAACTTCGAATTC-ATG-AAAAAAATAGTGTGAACACCTCATTTTTTgtataacggtgaaaatcgtctgaaaaacacgtaccgctagggggcgattttataaagagtctacaggacttta
gi|3 : AATGTTTCATTTTAATTTAAATCCAAATTT-ATG-AAAACCTTAACGTGAACACACTTTCTTTTTATTCGTTTATA---GTTAGTGAAATTGATAAAGTT
gi|4 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttTAAAAAGAAGG-GGTGTTCACACCAGGTTTTT--C---ATAA-ATTCGAAATCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACAGTGTTTGCCTACTATTTCGTACGACATC----------C----AANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNCTAAGTGTTTGATTTAAATCTAAATTCAAATTT-ATG-AAAAGACTAGTGTTATCACCCCCTCTTTTTACTCGATCATATTTTTTAGTAAAATAAATAAAGTTTA
gi|5 : TAAAAAGAGGATGATATCCACGCTAGTTTTTT--C---ATAA-ATTC----------------AAAA-TAAAACACTT-AA-A-A--AC--AC-ACATT--CCAGCTATTTCAGACGATGTCAN----N---N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNTTTTAGGTG------TTTAATTTA------AATTT-ATG-AAAAAACTAGCTTGAACACCCCCACTTTTT
gi|6 : atttcatatacgttaaacttaatttaaccgaatatgaccgaaAAAGAGGG-GGTGTTCACACTAGTTTTTT--C---ATTA-ATTCAAATTTAAAT-TA---AAAA-TGAAACCCTT-AA-A-A--AC--ACGACGTTTGTCTGCTGATTTGGGCGACGTC-G----TNN-N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNTTAAGTGTTTAATATTAATTTAAATTCAAATTG-ATG-AAAAAA-TAGCGTGAACACCCCCTCTTTTTt
gi|7 : TTTTTT--C---ATGA-ATTCGAAT-CACAT-TA---AAA-------C-CTTGAA-A-A-CAT--ACGTTGTTTGCATGCTATTTCGAACGACGTC-G----T---TTNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNGTTTTTAAGTGTTTCATTTCTATATTAATTTAAATCT-ATGTAATAAACTAGTGTGAATACTCCCTCTTTTTA
gi|8 : AGAGGG-GGTGTTCACGCTAAATATTT--C---ATAA-ATTCGAATTCAAAT-TA---AGAA-TGAAACACTT-AA-AGA-TAC--GCGACGTTTCCCTGCTATTTCGGACGACGTC-G--------N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNCAAGTGTTTCATTTTAATTat
gi|9 : gGTTTGCCTGCAATTTTGGATAACATC-G----N---N----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNN---AAGTGTTTGATTTTAATTTAAATTCAAATTC-ATG-AAAAAACTACCTTGAAC
blockSeqs : T GT TTT . A . A G C G AC TG A GTATTTT A A T T NNN . NNNN C G T A TTT TT
blockSeqs : . . . . . . . . . . A . G GTTTNNN N . N N NNN . NNNN A . . T T TG
blockSeqs : . . . . . . . . . . C . G GTATTT N . N N NNN . NNNN C . . C . AA
blockSeqs : . . . . . . . . . . C . G GTNNN N . N N NNN . NNNN C . .
blockSeqs : . . . . . . . . . . C . G ANNN N . N N NNN . NNNN G . .
blockSeqs : . . . . . . . . . C . A GNN N . N N NNN . NNNN A . .
blockSeqs : . . . . . . . . . T . G GN N . N N AA C . .
blockSeqs : . . . . . . . . . . . G C . . . C . .
blockSeqs : . . . . . . . . . . . G G . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons : *** ** GTTC*********** NNN
originalCons : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTC-G----T---T----AATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
finalCons : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTCGTTC-----------AATGTAAGTAT-CATTGGGACGTTCNCTTNNNCGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTTTTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAGGTTGATACAAACGCGGGTTTAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAA
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGTCTCATTT
Alignments
lowQualScore : 11 22222222 1111111111111111111111111111111111111111111 111
lowQualScore : 6 55 666 3 3 666 3 3 3 3 11 88 2 77777777 0 3 4 3 0 1 6666666666666666666666666666666666666666666 4 0 0 3 3 0 0 1 777 0 22
lowQualScore : . .. ... . . ... . . . . .. .. . ........ . . . . . . ........................................... . . . . . . . . ... . ..
lowQualScore : 7 00 444 6 6 444 6 6 6 6 00 66 0 44444444 3 1 4 1 1 0 7777777777777777777777777777777777777777777 5 5 5 6 6 5 2 2 000 2 22
consensus : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTCG---T--TTAATGTAAGTAT-CATTGGGACGTTCNCTTGAACGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTT---TTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
Reference ( family-490 ) : TAAAAAGAGGG-GGTGTTCACGCTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACGACGTTTGCCTGCTATTTCGGACGACGTCG---T--TCAATGTAAGTAT-CATTGGGACGTTCNCTTNNNCGTTGTC-AAAATCACAAGCAAATGGNTGT-TGTT---TTTTTAAGTGTTTNATTTTAATTTAAATTCGAATTT-ATG-AAAAAACTAGCGTGAACACCCCCTCTTTTTATTCGGTTATA--TTTTAGTGAAATNAATAAAGTTTA
gi|1 : TTTTT--T---ATAACATT----TTTAAAT-CATTTAAAA-TGCAACACTT-AA-A-A-AACC-AC----TTTGTTTGCTGTTGGGGACGACTTCG---TATTTAATGTAAGTAT-CATTGGGACGTTCACTTGA-CGTTGTCTAAAATCACAAGCAAATGG-TGTATGTT---TTTTTA-GTGTTAGATTTCAATGTTAATCTGAATTT-ATG-AAAAAACTAATGAGAACACCCCCTCTTTTTATTCAGTTATA--TTATAGTCAAATGAATGAAGTTTA
gi|11 : ttaaggtggttcgcagcattcctaccagatttttaatatataggtttaaattatcaataatccatacgcttcttttttaaatatagtaagatagtggtacatatttttcgaacggttttctacattattttcccttataagatggtcaataccggtataaattgaaaattgtttttaataacatttttattttatttattacatttcctgtgatgcgattataattttgattcagataaaacgcaaattgtgtttccgttatagctaatcattacggcggggttgatcgaaataacacatttagatgattcactcctgattgtgcaaaaaagccttggtactagttcttgaattttacgtatgtACTCTAGTTTTTTGTC---ATAA-ATTCGAATTCAAAT-TA---GAAA-AGGAACACAC-AA-A-A-AACTGTCAACGTTTCCTTGCTATTTCGGACCACGTCGTA-T--TTTATGTAAGTATATATTGGcaa
gi|12 : cgacgGG-GGTGTTCACGCTAGTTTTTT--TTTTATAA-ATTCGAATTCAAATAAA---AAAA-TGAAACAC----A-A-A-CAC--ACGACGTTCGCCTTTTGTTTTAGACAACGt
gi|13 : tcaACATTAGTTTTTT--C---ATAA-ATTCGAATTCAAAT-CA---AAAA-TGAAACCCTT-AA-A----AC--ACGAAGTTTATTCGCTATTTCGGAC
gi|14 : TAAAATGAAGG-GGTGGCAACGCTATTGTTTT--C---ATAA-ATTCGAATTCAAAT-TA---AAAA-CACAACattcttttttt
gi|15 : aAACACTA-AACA-A-CCA--ACGACGTTTGCCTACTATTTCAGACGATGTCGTATT--TTAAGGT-AGTAT-CA-TATGACGTTCTCTT-AACGTcgaaatcacaagcaatactgtgtt
gi|16 : -TGTT---TGTTTAAGTATTTCATTCTAATTTAATTTCGAAATT-ATG-AAAAAAACAGCGTGAACA-CACCTCTTTac
gi|18 : gTTTTT--C---ATAA-ATTTGAATTCTAAT-TA---AAAAATAATACACTT-AA-A-AACAC--ACGACGTTTGCCATCTATTTCAAACTACGTttccccctctttt
gi|19 : TTTCAGT-TTTAATTTGAATCCGAATTCGAATTT-ATG-AAAAAACTAGCGTGAATACc
gi|2 : caaaactaatgtAGTTTGATG-TAAAAACTAGCGTAAACACTCCCTCTTTTTATTCGGAAATA--TTTTAGTGAAATTTATAAAGTTTAt
gi|20 : aaacaacaaaatcatatttattgacataattactgaatcatttaaggtagttcgcggcgatcctatcagatttttttacagctggcgtagattatcaaaaatctgtactacagatattggaactcttaactttcatttaagctttggtttttttttaaataacgtacagcagtttcttgttaaaacgttttacccgtgtaaataatcaatattgattcaaaattgtttttaataacatttatttattatattacttattttatttcctgtgatgagattataattttcatgcatataaagtacaatgtgtgtttacctttacatctaaccattacgccggtgttgatataagcgcaagtttaaaaaaaatgaacattcacggttgactgcgcgaaaaaactctgatacaagttttgaattttacacgtTGTTTCACTTTAATTTAACTTCGAATTC-ATG-AAAAAAATAGTGTGAACACCTCATTTTTTgtataacggtgaaaatcgtctgaaaaacacgtaccgctagggggcgattttataaagagtctacaggacttta
gi|3 : AATGTTTCATTTTAATTTAAATCCAAATTT-ATG-AAAACCTTAACGTGAACACACTTTCTTTTTATTCGTTTATA---GTTAGTGAAATTGATAAAGTT
gi|4 : ttgcttatttcgtttcctgtgataatattataactttgatgctgattaaatactatttgtgttacctttacgtctaatcattacgcctgggttgatattaacgcgggtttagaaacaacaaattttgagcatttatgtctgattgtgcgaaaacgctctggtacaagctcttaaatttcatatattatgtttTAAAAAGAAGG-GGTGTTCACACCAGGTTTTT--C---ATAA-ATTCGAAATCAAAT-TA---AAAA-TGAAACACTT-AA-A-A-CAC--ACAGTGTTTGCCTACTATTTCGTACGACATC--------CAANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNN---NNNCTAAGTGTTTGATTTAAATCTAAATTCAAATTT-ATG-AAAAGACTAGTGTTATCACCCCCTCTTTTTACTCGATCATATTTTTTAGTAAAATAAATAAAGTTTA
gi|5 : TAAAAAGAGGATGATATCCACGCTAGTTTTTT--C---ATAA-ATTC----------------AAAA-TAAAACACTT-AA-A-A--AC--AC-ACATT--CCAGCTATTTCAGACGATGTCA---N--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNN---NTTTTAGGTGTTT------AATTTAAATT------T-ATG-AAAAAACTAGCTTGAACACCCCCACTTTTT
gi|6 : atttcatatacgttaaacttaatttaaccgaatatgaccgaaAAAGAGGG-GGTGTTCACACTAGTTTTTT--C---ATTA-ATTCAAATTTAAAT-TA---AAAA-TGAAACCCTT-AA-A-A--AC--ACGACGTTTGTCTGCTGATTTGGGCGACGTCG---TN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNN---NNNTTAAGTGTTTAATATTAATTTAAATTCAAATTG-ATG-AAAAAA-TAGCGTGAACACCCCCTCTTTTTt
gi|7 : TTTTTT--C---ATGA-ATTCGAAT-CACAT-TA---AAA-------C-CTTGAA-A-A-CAT--ACGTTGTTTGCATGCTATTTCGAACGACGTCG---T--TTNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNNNNGTTTTTAAGTGTTTCATTTCTATATTAATTTAAATCT-ATGTAATAAACTAGTGTGAATACTCCCTCTTTTTA
gi|8 : AGAGGG-GGTGTTCACGCTAAATATTT--C---ATAA-ATTCGAATTCAAAT-TA---AGAA-TGAAACACTT-AA-AGA-TAC--GCGACGTTTCCCTGCTATTTCGGACGACGTCG-------NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNN---NNNNCAAGTGTTTCATTTTAATTat
gi|9 : gGTTTGCCTGCAATTTTGGATAACATCG---N--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN-NNNN---N----AAGTGTTTGATTTTAATTTAAATTCAAATTC-ATG-AAAAAACTACCTTGAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAGGTTGATACAAACGCGGGTTTAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAA
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGTCTCATTT