lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 11 4444444444444444444444 333333333333333333333333 1 22 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111 222222222222222 1 1 111111 111111 33333333333333333333 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111111
lowQualScore : 22222 55 8 44 3 888 3 55 4 4 6666666666666666666666 666666666666666666666666 4 44 3 5 5 5 00 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 5 2 888 4 2 11111 0 4 000000000000000 1 7 66 0 4 0 000000 4 7 222222 66666666666666666666 0 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666 444444444 3 2 1 6666 33 3
lowQualScore : ..... .. . .. . ... . .. . . ...................... ........................ . .. . . . . .. .................................................................................. .. . . ... . . ..... . . ............... . . .. . . . ...... . . ...... .................... . . ..................................................................................................................................................... .... ......... . . . .... .. .
lowQualScore : 33333 66 8 66 3 555 1 55 0 0 0000000000000000000000 999999999999999999999999 0 77 7 0 0 0 44 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 0 2 000 4 0 11111 8 4 222222222222222 9 0 11 8 2 8 777777 4 0 888888 88888888888888888888 5 6 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 333333333 7 9 5 5555 66 8
consensus : AAAAAAAT-AATACCT-GTGTTT--AGGGTTAC-TTGAC---CAA-AA--A-A-A----AATA----A-----G---GTAGGTAGGC------A-ATTTTTTCTTTTCTAATTT-TTT-TTCTAATTTTT-ATT-TCATGGAGAAAA-TGTCATAATAAT-----GAA-CTA-----TAG-------AT-TTATAAGCA---------AA----------CTTG------------TT--TTT-CTGTTCTAT--AAAA-AAC-----TAA-TT-----ATG--AT--AGTAAATCAATAAA--GAACAATACAAATATAATTT----TCTTGAC-ACAT------TAAGCAGAT----TCGTTCA-GCAGTTTTTCGTACTTTT-ACATTT---AA---A-AAAA----T----TTTAA-AG----ATG--AAAAA---------AA--NA----TTA---GGG-------TC------GAG-------ACTC-AATTT--------T------A--------------G---------G----GT---------AACCCTA-AACACAGG----TAT-TTTTTTGTCTGGCCTTATC
Reference ( gi|2 ) : AAAAAAATGAATACCT-TTGCTT--AGGGTTAC-TTGAC---CAA-AA--A-A-A----AGTA----A-----G---GTAGGTAGGC------A-ATTTTATCTTTTCTAATTT-TTT-TTCTAATTTTT-ATT-TCATGGACAAAA-AGTCATAATATT-----GAA-CTAC-CGGTAGT------ATTTTATAAGCA---------AA----------CTTA------------TT--TTT-CTGTTCTAT--AAAA-AAC-----TAA-TA-----ATG--AA--AGTAAATCAGTAAA--GAACAATACAGATACAGTTT----TCTTGAC-ACGT------TAAGCACAT----TCGTTCA-GCAATTTTTCATACTTTT-ACATTT---AA---A-AAAA----T----CCTAACAG----ATG--AAAAA---------AA--CA----TTG---GGA-------TC------AGG-------ACCC-ACTTT--------T------A--------------G---------G----GT---------AACCTTA-AACACAGG----TAT-TTTTTTGTTTGGCCTTATC
gi|3 : AAAAAAAT--ATACCT-GTGTTT--AAGGCTAC-TTGAC---CAATAA--A-A-A----AAAA----G-----G---GTAATGAG-----------------------TAGTTT-TT----CTAATTTTT-ATT-TCATGGAGAAAA-TATCATTATAAT-----GAA-CTA------------------TTATAAGCAAATTGATTTAA----------CTTG------------TT--TTT-CTGTTCTAT--AAAA-AAC-----TAATTACCAGTATG--AT--AGAAACTCAACAAA--GAACA--ACATGTATAATTT----TCTTGAC-AAAT------TAAGCAGAT----ATGTTCT-GCAGTTTTTTGTACTTTT-ACATTT---TA---T-AATT----T----TTTAA------------AAAAATGTTTTTTTAA--CA----TTA---GGG-------TC------A---------ATTT-AATTT--------T------A--------------GGGTCGGTCTG----GT---------AACCCTA-AACACAGG----TA--TTTTTTGTCTGGCCTTATC
gi|1 : agAAAAAAATG----CCT-GTGTTT--AGGGTTAC-CTGAC---CAA-
gi|4 : cataaaaatacctgtgtttagggttacttgacaaaaaataaaatagggtaggtaggtaggcacatttttttattctaatttgtttttctaattttatttcatggagaaaatgacatactattataaagcattatagcaacttgattttattttaacctgttttcctgttctataaaatctgattatgatagttaatcaataaagaacaatataaacttatttaatgttttgacacattaagcaatgtcctctttcgcagtttttcatacttttatattaaatgttttgttttttaaaattatttggttgggactaaattttagggAAAACAATT--TACCT-GTGTTT--ATGCTTAC-TTGAC---CAA-AA--A-A-A----A--A----A-----------ATGAAGGC------A-ATT-------------TTT-TTT-TTTAAATTTTT-ATT-TCATGGAGAAAA-TGTCATTATA-T-----GAA-CTAT-TACAAAT------A---TATAAGAA---------AA----------TTTACCGGTAAC----TTGATTT-CTATTCTAT--AAAC-ACC-------A-TA-----AT---------TA------TGAT--GAACAATACAAATATATTTT----TCTTGCC-ATAT------TAAGCAGAT----TTGTTAA-GCAGATTTTTGTACTTTA-ACATTT---TA---A-AAAA-----------TA--AG----ATA--AAAAT---------AA--TA----TTT---CAA-------TTTGCAAAAAA-------ACCC----TT--------T------AGGGTTGGGTCAGTTG---------G----GT---------AACCTTA-AACATGGG----TAT-TTTTT--TCTGGTCTgtcgggacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|9 : agAAAAAAA--AA-AC----TGTTTTAAGGGTTAC-TTGACTCCCAA-AA--A-A-A----AGGA----AA----G---GTAGATAGGC------A-ATTTT------TCT---TT-TTT-TTCTAATTTTT-ATT-TT-TCGAAAAAC-TGTCATAAT---------AA-CTA------------------TTATAATCA---------AA----------TTGATTTGAACTTTTTTT--TTT-CTATTCTTT----AA-AAT-----T---TT-----TTG--AT--AATAAATCAATAAG--AAACAATACAAATTTAATTT----TCTTGAC-ACAT------TAAGCAGAG----TTG-----------TTTCGTACTTTT-A
gi|5 : AAAAAAGTG----CCT-GTATTT--TGGGTTAC-TTGAC---CAA-AC--A-A-ATAG-AGTA----------G---GTTGGTTGGT------A-TTTTTTTCTTT-CT--TTT-TTT-TTCT---TCTT-ATTTTTATT----------TCAT-----------GAA--------GTAA-------ATTTTA----------------A----------CTTG------------TT--TTTTCTGTTCAAT--AAAAAAAC-----TAA-TT-----ATA--AT--AGTAAATCAATAAA--TAAAAATTTAAATATGATTT----T-TAGAC-ACAT------TAAACAGA---------TCA---------TTACATTTTT-ACATTA---AA---A-AAAAAAGTT----TTTA--AG----ATG--AAAAA---------AA--AAAATGTTA---TGG-------TT------GAG-------ACTG-AACTT--------T------AGTGTCGGTC-----G---------G----GT---------AACC--------CAGGAAATTGT-TTTTTTCTTT--CCTTA
gi|7 : tgAAAAAAAAAAA---CT-GTGTTT--AGGGTTAC-TTAAC---CAA-AACAA-ATA----AATA----AAACAGG---ATAGGTAGGG------A-TTTTTTTCTTTTGTAATTT-TTTCTTCTTATTTTT-ATT-TCATGGAGAAAATGGCCATAATAAT-----GAA-CTAC-ca
gi|12 : cAAAAGAATAAA-ACCT-CTGTTA--AGGGTTAC-TTGATA--CAA-AA--A-A-A----AAT----------------TGGGTAGGC------A-TTTTTTTCTTTTCTA-TTT-TTG-TTCTATTTTTTTATT-TCATGGAGAAAA-TGTCATGTAAAT-----GAG-CTAtattaacacattgaacaatacaaatacaatttttttgacacattaagcacaagtttttgtactattacatataatttaaaaaaaataatttcaagatatattttagggtccatgtattttttgtctggccatattaaa
gi|11 : aAGAAAAA--AAAACCTGTTG-TT--AGGGTTAC-CTGAC---CAA-taataagtaaataga
gi|14 : ttcttggaaaaatgttatttcaagcaatttttggtactttttatatttttaaaacaaaataaaatttaagatacaaaaaaaacagtcagtgttgaaacccgattttagggAAAAAAATAGGTGC-----GTTT--CAGGTTACACTG-C---CAA-AA--A-A-A----A-TA----G-----G---GTAGGTAGGTTGGATAA-ATATTTTTTTTTTTTTTTT-TTT-TTTTGATggccttagcaattgcagataactttata
gi|3 : agccaaatAAAA--AATACCT-GTGTTT--AGGGTTAC-CAGAC---CGA-atattgattt
gi|1 : agaaaaaaatatacctgtgtttaaggctacttgaccaataaaaaaaaagggtaatgagtagtttttctaatttttatttcatggagaaaatatcattataatgaactattataagcaaattgatttaacttgtttttctgttctataaaaaactaattaccagtatgatagaaactcaacaaagaacaacatgtataattttcttgacaaattaagcagatatgttctgcagttttttgtacttttacattttataattttttaaaaaaatgtttttttaacattagggtcaatttaattttagggAATACCT-GTGTTT--AGGGTTAC-TTGAC---AAA-AA--ATA-A----AATAGGGTA-----G---GTAGGTAGGC------ACATTTT-TTTATTCTAATTTGTTT-TTCTAA-TTTT-ATT-TCATGGAGAAAA-TGACATACTATTATAAAGCA-TTA-----TAGCAACTTGATTTTAT--TTT---------AA----------CCTG------------TT--TTC-CTGTTCTAT---AAA-ATC-----TGA-TT-----ATG--AT--AGTTAATCAATAAA--GAACAATATAAACTTA-TTTAATGTTTTGAC-ACAT------TAAGCA-ATGTCCTCTTTC--GCAGTTTTTCATACTTTT-ATATT---------A-AATG----T----TTTGTT-------TT--TTAAA---------AT--TA----TTT---GG--------TT------GGG-------ACTA-AATTT--------T------A--------------GGGTTGGTCAG----GT---------AACCCTA-AACACAGG----CAT-TTTTTTGgtctggccttatc
gi|15 : cataaaAATACCT-GTATTT--TGGATTAC-TTGAT---TTA-CA--G-A-A------TA----A-----G---GTAGATAGAT------AGGTTTTATATTTATTCATTT-GTT-TTcgggacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|6 : gccagaaa---CAA-AA--A-A-ACCCTGATA----A-----GTTAGTAAGTAGGC------A-ATT--ATTCTTTCTAAT------------ATTTTT-----TCATGGAGAAAA-TGTCATGATAAT-----GAA-GAATTCTGTA-----------TTATAAGTA---------AATTGGTTTTAACTTG------------TT--TTT-CTATTCTAT--AAAA-AAA-----TAA-TT-----GTGTGAT--AGTAAATCAATAAG--GTACAATACAAATATAATTT------TTGAC-ACATTTTTAATAAACAGAT----TTGTTCA-ACAGTTTTTTATGCTTTT-ACAt
gi|8 : ataggaAATTTT-----GAATCT------TGGT------ATATTATAAACA---------AATTAATTTTTACTTG------------TT--TTT-CTGTTCTA---AAAT-AAC-----TAA-TT-----ATG--AT--AGTAAATAAA-AAA--GAACAATACAAATATGATTT----TCTTTACTATTT------T-AGCAGAT----TCGTTCT-GCAGGTTTTCATACTTTT-ACATTT---AATTTA-TTTT----T----TTTAA-AG----ATG--AAAAA---------AA--AA----ATGTATGGA-------TT------GGG-------ACTC-AGTTT--------T------A--------------GGGTCGGTA-G----GT---------AAACTCATAACACAGcgcaaattttatttaaggtcatcactcaattatagggtcagt
gi|7 : ----------CTTA------------TT--TTT-AT-TTC-ATGGAGAA-AATGGCCATAA-TA-----ATG--AACTACTA--TTAACACATTGAACAATACAAATACAATTT----TTTTGAC-ACAT------TAAGCACA-----------A-G----TTTTTGTACTATT-ACATAT---AA------------------TTTAA------------AAAAA---------AT--AA----TT--------------TC------AAG-------ATAT-A-TTT--------T------A--------------G---------G----GT-----------C---------CATG----TA--TTTTTTGTCTGGCCATATtctggccttgg
gi|10 : caaaaaaaaaaactgtgtttagggttacttaaccaaaacaaataaataaaacaggataggtagggatttttttcttttgtaattttttcttTAT--AAAG-C-C-----TAA-TT-----ATG--AA--AGTAAATCAATAAA--GAACAAAACA---ATAATTT----ACTTGTC-GCAT------ATAGCAGAT----TCATTCC-ATAGTTTTTCATAATTTT-ACATT----AA---A-AAAA------------AAAAGGAAAATG--AAAAA---------AAACCA----TAA---GAG-------TC------GGG-------ACTCTAATTTAGGGTCTGT------T--------------G---------G----GT---------CATTCTA-ATCATAGG----TAT-TTTTTTGTCTGGCCtaaa
gi|11 : TTCAAGCAATTTTTGGTACTTTTTATATTTTTAAA---ACAAAA----TAAAATTTAAGAT----ACA--AAAAA---------AA--CAG---TCA---GTG-------TT------GAA-------ACCC-GATTT--------T------A--------------G---------G----GTTGGTCAGGTAACCCTA-ACAACAGG----T-T-TTTTTT-TCTGGCCTTAaaat
gi|14 : ttcttggaaaaatgttatT-ATATCA---AA---A-AAAA------------AAAAA----AAA--AAAAA---------AA--TA----TTT-----A-------TC------CAACCTACCTACCCTATTTT--------TTTTGGCA--------------G---------T----GT---------AACCTGA-AACGCACC----TAT-TTTTTTATTTGGCgcaattgcagataactttata
gi|13 : a---A-AAAA----T----TTCAA--G----ATGCCAAAAA---------CA--CAATG-TTA---GGG-------TT------GCG-------ACTT-AATTT--------T------ACGGTCAGTC-----A---------G----GT---------AACCCTT-AACACAGT----CTT-TTTTTTTTCTGACCTttgattt
gi|3 : gtgaaaaaaat----ATG--AAATA---------AA--AA----TTA---GAAAAACTACTC------ATT-------ACCC-TTTTT--------TTTT---ATT------------G---------GTCAAGT---------AGCCTTA-AACACAGG----TATATTTTTTaacatgtaatattttggagatggtgttat
gi|16 : aga--------------G---------G----GTG--------AACCTTA-A-TACAGT----TAA-TTTT-TGTTTGGCCTCATggagaaaatatcattataatgaactattataagcaaattgatttaacttgtttttctgttctataaaaaactaattaccagtatgatagaaactcaacaaagaacaacatgtataattttcttgacaaattaagcagatatgttctgcagttttttgtacttttacattttataattttttaaaaaaatgtttttttaacattagggtcaatttaattttagggtcggtctggtaaccctaaacacaggtattttttgtctggccttatc
gi|1 : tatggtcggaactgaagtttaaggtcaatc----GT---------AACCCTA-AACACAGG----TAT-TTTTATG
gi|7 : ----GT---------AACCCTA-AACACAG-------T-TTTTTTTTTTGttgacaaaaaataaaatagggtaggtaggtaggcacatttttttattctaatttgtttttctaattttatttcatggagaaaatgacatactattataaagcattatagcaacttgattttattttaacctgttttcctgttctataaaatctgattatgatagttaatcaataaagaacaatataaacttatttaatgttttgacacattaagcaatgtcctctttcgcagtttttcatacttttatattaaatgttttgttttttaaaattatttggttgggactaaattttagggttggtcaggtaaccctaaacacaggcatttttttgtcgggacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GCTAAAGCATTTTAGTAAAGTAAAGGTCAGCGCCCATGTTAATA
Alignments
lowQualScore : 11 111 22222222222222 111111 22222222222 111111 11111 88888888888888888888888888888888888888888888888888888 111111111 111111 111111 1111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555555555555555555555
lowQualScore : 4 99 888 4 000 3 55 3 888888 2 22222222222222 666 000000 55 44444444444 3 3 555 4 4 333333 2 11111 8888 33333333333333333333333333333333333333333333333333333 66 4 0 4 555555555 111111 55 55 1 55 55 55 4 4 111111 4444444444 222 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 33 2 44 55555555555555555555555555555555555555555 2 9999999 33
lowQualScore : . .. ... . ... . .. . ...... . .............. ... ...... .. ........... . . ... . . ...... . ..... .... ..................................................... .. . . . ......... ...... .. .. . .. .. .. . . ...... .......... ... . . . ......................................................................................... . .. . .. ......................................... . ....... ..
lowQualScore : 4 00 999 0 000 6 00 6 222222 2 33333333333333 444 555555 33 33333333333 6 6 666 4 4 999999 0 11111 5555 77777777777777777777777777777777777777777777777777777 11 4 9 0 333333333 555555 55 55 3 55 55 55 1 0 555555 7777777777 555 6 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 88 7 33 99999999999999999999999999999999999999999 5 5555555 55
consensus : AAA-AAAAN-AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA--A-A-A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA----T---A---------ATTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
Reference ( family-45 ) : AAA-AAAAT-AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA--A-A-A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA----T---A-------G-ATTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGAGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
gi|1 : AAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---AAA-AA--ATA-A----AATAGGGTA-----G---GTAG---GTAGGC------ACATTTTT-T-TATTCTAATTTGTTT-TTCT--AA-TTTT-ATTTCATGGAGAAAAT-GACATACTATTATAAAGCA-----TTA----T---AGCAACTTG-ATTT--TATTTTAA----------CC----TG--------TT--TTC-CTGTTC-TAT-AAA-ATC-----TGATTA------TG--A--TAGTTAATCAATAAA--GAACAATATAAACTTATTTAATGTT-TTGACACA-T------TAAGCA-ATGTCCTCTTTC--GCAGTT-TTTCATACTTTT-ATATT--------------A-AATG---TTTTGTTTTTTA-AA----AT-----------------------------------T--A------T-T--TGGTTGGGACTA-AATTT--------TA---------GGGTTGGTCAGGT---------AACCCTAAACACAGG----CATTTTTTTGTCGGG
gi|10 : cat-TATAAAG-C-C-----TAATTA------TG--A--AAGTAAATCAATAAA--GAACAAAACAA-------TAATTTACTTGTCGCA-T------ATAGCAGAT----TCATTCC-ATAGTT-TTTCATAATTTT-ACATTA--------AA---A-AAAA-------A------A-AGGAAAATG--AAAA----------------A---------AAACCA------T-AA-GAGTCGGGACTCTAATTTAGGGTCTGTT---------G---------GGT---------CATTCTAATCATAGG----TATTTTTTTGTCTGGCCacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|11 : TTCAAGCAATT-TTTGGTACTTTTTATATTTTTAAAACAAA---ATAAAA---TTT--------A-AG----ATACAAAAA----------------A---------AAC--AG-----T-CA-GTGTTGAAACCC-GATTT--------TA---------G---------GGTTGGTCAGGTAACCCTAACAACAGG----T-TTTTTTT-TCTGGCCTTAaaat
gi|12 : ttcttggaaaaatgttatAAA-AGAAT-AAA--ACCTCTGTTAAGGGTTAC-TTGATA--CAA-AA--A-A-A----AAT----------------TGG---GTAGGC------A-TTTTTT-TCTTTTCTA-TTT-TTG-TTCT--ATTTTTTTATTTCATGGAGAAAAT-GTCATG-----TAAATGAG-----CTA----T---A--------------ATAAGTAAA----------gcaattgcagataactttata
gi|13 : a---A-AAAA---TTTCA------A--G----ATGCCAAAA----------------ACAC------AAT--G------T-TA-GGGTTGCGACTT-AATTT--------TACGGTCAGTCA---------GGT---------AACCCTTAACACAGT----CTTTTTTTTTTCTGACCTtaga
gi|14 : gtgaaaaaaatAAATAAAAA-AAT--AGGTGCGTTTCAGGTTACACTG-C---CAA-AA--A-A------AATA----G-----G---GTAG---GTAGGTTGGATAA-ATATTT-TTTTTTTTTTTTT-TTT-TTTT--GATaacatgtaatattttggagatggtgttat
gi|15 : agccA-GAAA--AAT--ACCTGTATTTTGGATTAC-TTGAT---T---TA--C-A-G----AATA----A-----G---GTAG---ATAGAT------A-GGTTTTATATTTATTCATTT-GTT-TTatattgattt
gi|16 : gcc-TA-TGGTCGGAACTG-AAGTT--------TAAGGTCAATCG---------GGT---------GAACCTTAATACAGT----TAATTTTT-GTTTGGCCTCATt
gi|2 : AAA-AAAATGAAT--ACCTTTGCTTAGGGTTAC-TTGAC---CAA-AA--A-A-A----AGTA----A-----G---GTAG---GTAGGC------A-ATTTTA-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGACAAAAA-GTCATA-----ATATTGAA-----CTACCGGT---A-------GTATTTTATAAGCAAA----------CT----TA--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATAA------TG--A--AAGTAAATCAGTAAA--GAACAATACAGA--TA--CAGTTTTCTTGACACG-T------TAAGCACAT----TCGTTCA-GCAATT-TTTCATACTTTT-ACATTT--------AA---A-AAAA---TCCTA------ACAG----ATG--AAAA----------------A---------AAC--A------T-TG-GGATCAGGACCC-ACTTT--------TA---------G---------GGT---------AACCTTAAACACAGG----TATTTTTTTGTTTGGCCTTATC
gi|3 : AAA-AAAAT-A-T--ACCTGTGTTTAAGGCTAC-TTGAC---CAATAA--A-A-A----AAAA----G-----G---GTAATGAGTAG-------------------------------TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-ATCATT-----ATAATGAA-----CTA----T----------------T-ATAAGCAAATTGATTTAA-CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTACCAGTATG--A--TAGAAACTCAACAAA--GAACAA--CATG--TA--TAATTTTCTTGACAAA-T------TAAGCAGAT----ATGTTCT-GCAGTT-TTTTGTACTTTT-ACATTT--------TA---T-AATT---TTTTA------A-A-----------AAA----------------ATGTTTTTTTAAC--A------T-TA-GGGTCAA--TTT-AATTT--------TA---------G---------GGTCGGTCTGGTAACCCTAAACACAGG----TA-TTTTTTGTCTGGCCTTATC
gi|4 : agAG-AAAAC-AATTTACCTGTGTTTATGCTTAC-TTGAC---CAA-AA--A-A-A----AA-A----A-----T---G-A------AGGC------A-ATTTT-----------------TT-TTTTTAAATTTTT-ATTTCATGGAGAAAAT-GTCATT-----AT-ATGAA-----CTA----TTACA-------A-ATAT-ATAAGAAAA----------TT----TACCGGTAACTTGATTT-CTATTC-TATAAAC-ACCA----TAATTA------TG--A--T----------------GAACAATACAAA--TA--TATTTTTCTTGCCATA-T------TAAGCAGAT----TTGTTAA-GCAGAT-TTTTGTACTTTA-ACATTT--------TA---A-AAAA---T----------A-AG----ATA--AAAATAATATTTCAATTTGCA---------AAA--AAACCCTT-TA-GGGTTGGG--TC-AGTT--------------------G---------GGT---------AACCTTAAACATGGG----TATTTTTT--TCTGGTCT
gi|5 : A-AAAA--AGT--GCCTGTATTTTGGGTTAC-TTGAC---CAA-AC--A-A-A----TAGAGT--A-----G---GTTG---GTTGGT------A-TTTTTT-TCTTTCTTTTTTT-TTC-TTCT--TATTTTT-ATTTCATGAAG-------------------------------------T---A-------A-ATTT--TAA---------------CT----TG--------TT--TTTTCTGTTC-AATAAAAAAAC-----TAATTA------TA--A--TAGTAAATCAATAAA--TAAAAATTTAAA--TA--TGATTTT-TAGACACA-T------TAAACAGA---------TCA----------TTACATTTTT-ACATTA--------AA---A-AAAAAAGTTTTT------A-AG----ATG--AAAA----------------A---------AAA--AAATG--T-TA-TGGTTGAGACTG-AACTT--------TAGTGTCGGTCG---------GGT---------AACC-------CAGGAAATTGTTTTTTTCTTT--CCTTA
gi|6 : tg---CAA-AA--A-A-ACCCTGATA----A-----GTTAGTAA---GTAGGC------A-ATTATT-C--TTTCTAAT--------------ATTTTT----TCATGGAGAAAAT-GTCATG-----ATAATGAAGAATTCTG----T---A-----------TT-ATAAGTAAATTGGTTTTAACT----TG--------TT--TTT-CTATTC-TATAAAA-AAA-----TAATTG------TGTGA--TAGTAAATCAATAAG--GTACAATACAAA--TA--TAATTT--TTGACACA-TTTTTAATAAACAGAT----TTGTTCA-ACAGTT-TTTTATGCTTTT-ACAC---------------G-CAAA---TTTT---------------AT---------------------------------------------T-TA-AGGTCATCACTC-AATTA--------TA---------G---------GGT---------ca
gi|7 : ataggaAAA-AAAAA-AA-----CTGTGTTTAGGGTTAC-TTAAC---CAA-AACAA-ATA----AATA----AAACAGG---ATAG---GTAGGG------A-TTTTTT-TCTTTTGTAATTT-TTTCTTCT--TATTTTT-ATTTCATGGAGAAAATGGCCATA-----ATAATGAA-----CTA----cagt
gi|7 : ca----------CT----TA--------TT--TTT-AT-TTCATGGAGAA-AATGGCCATAATAA------TG--AACTACTA--TTAACACATTGAACAATACAAA--TA--CAATTTTTTTGACACA-T------TAAGCA------------CA---AGTT-TTT-GTACTATT-ACATAT--------AA-------------TTTA------A------------AAAA----------------A---------ATA--A------T-T-----TCAAGA-TA-TATTT--------TA---------G---------GGT-----------C--------CATG----TA-TTTTTTGTCTGGCCATATctattaacacattgaacaatacaaatacaatttttttgacacattaagcacaagtttttgtactattacatataatttaaaaaaaataatttcaagatatattttagggtccatgtattttttgtctggccatattaaa
gi|8 : caaaaaaaaaaactgtgtttagggttacttaaccaaaacaaataaataaaacaggataggtagggatttttttcttttgtaattttttcttTA----T---A-----------TT-ATAAACAAATTAATTTTTACT----TG--------TT--TTT-CTGTTC-TA-AAAT-AAC-----TAATTA------TG--A--TAGTAAATAAA-AAA--GAACAATACAAA--TA--TGATTTTCTTTAC-TATT------TTAGCAGAT----TCGTTCT-GCAGGT-TTTCATACTTTT-ACATTT--------AATTTA-TTTT---TTTTA------A-AG----ATGA-AAAA----------------A---------AAA--A------TGTATGGATTGGGACTC-AGTTT--------TA---------G---------GGTCGGTAGGTAAACTCATAACACA---------------GTCTGGCCTTtaaa
gi|9 : aattttgaatcttggAAA-AAAAA-AA-----CTGTTTTAAGGGTTAC-TTGACTCCCAA-AA--A-A-A----AGGA----AA----G---GTAG---ATAGGC------A-ATTTTT-C---------TTT-TTT-TTCT--AATTTTT-ATTTT-TCGAAAAACT-GTCATA-----ATAA---------CTA----T----------------T-ATAATCAAA----------TTGATTTGAACTTTTTTT--TTT-CTATTC-TTTAAAA---T-----T--TTT------TG--A--TAATAAATCAATAAG--AAACAATACAAA--TT--TAATTTTCTTGACACA-T------TAAGCAG----------------AGTTGTTTCGTACTTTT-Agg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTAAAGCATTTTAGTAAAGTAAAGGTCAGCGCCCATGTTAATA
Alignments
lowQualScore : 111 22222222222222 111111 22222222222 111111 11111 888888888888888888888888888888888888888888888888888888888888 111111111 111111 111111 1111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555555555555555555555
lowQualScore : 4 55 888 4 000 3 444 55 7777 2 22222222222222 666 000000 55 44444444444 3 3 555 4 4 333333 2 11111 000000000000000000000000000000000000000000000000000000000000 66 4 0 4 555555555 111111 55 55 1 55 55 55 4 4 111111 4444444444 222 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 33 2 44 55555555555555555555555555555555555555555 2 9999999 33
lowQualScore : . .. ... . ... . ... .. .... . .............. ... ...... .. ........... . . ... . . ...... . ..... ............................................................ .. . . . ......... ...... .. .. . .. .. .. . . ...... .......... ... . . . ......................................................................................... . .. . .. ......................................... . ....... ..
lowQualScore : 4 00 999 0 000 6 999 00 7777 2 33333333333333 444 555555 33 33333333333 6 6 666 4 4 999999 0 11111 222222222222222222222222222222222222222222222222222222222222 11 4 9 0 333333333 555555 55 55 3 55 55 55 1 0 555555 7777777777 555 6 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 88 3 33 99999999999999999999999999999999999999999 5 5555555 55
consensus : AAA-AAAAA-AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T----A---------TTTATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
Reference ( family-45 ) : AAA-AAAAN-AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T----A--------ATTTATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
gi|1 : AAA-AAT--ACCTGTGTTTAGGGTTAC-TTGAC---AAA-AA-ATA--A----AATAGGGTA-----G---GTAG---GTAGGC------ACATTTTT-T-TATTCTAATTTGTTT-TTCT--AA-TTTT-ATTTCATGGAGAAAAT-GACATACTATTATAAAGCA-----TTA-------T----AGCAACTTGATTT-TATTTTAA----------CC----TG--------TT--TTC-CTGTTC-TAT-AAA-ATC-----TGATTA------TG--A--TAGTTAATCAATAAA--GAACAATATAAACTTATTTAATGTT-TTGACACA-T------TAAGCA-ATGTCCTCTTTC--GCAGTT-TTTCATACTTTT-ATATT--------------A-AATG---TTTTGTTTTTTA-AA----AT-----------------------------------T--A------T-T--TGGTTGGGACTA-AATTT--------TA---------GGGTTGGTCAGGT---------AACCCTAAACACAGG----CATTTTTTTGTCGGG
gi|10 : cat-TATAAAG-C-C-----TAATTA------TG--A--AAGTAAATCAATAAA--GAACAAAACAA-------TAATTTACTTGTCGCA-T------ATAGCAGAT----TCATTCC-ATAGTT-TTTCATAATTTT-ACATTA--------AA---A-AAAA-------A------A-AGGAAAATG--AAAA----------------A---------AAACCA------T-AA-GAGTCGGGACTCTAATTTAGGGTCTGTT---------G---------GGT---------CATTCTAATCATAGG----TATTTTTTTGTCTGGCCacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|11 : TTCAAGCAATT-TTTGGTACTTTTTATATTTTTAAAACAAA---ATAAAA---TTT--------A-AG----ATACAAAAA----------------A---------AAC--AG-----T-CA-GTGTTGAAACCC-GATTT--------TA---------G---------GGTTGGTCAGGTAACCCTAACAACAGG----T-TTTTTTT-TCTGGCCTTAaaat
gi|12 : ttcttggaaaaatgttatAAA-AGAAT-AAA--ACCTCTGTTAAGGGTTAC-TTGATA--CAA-AA-A-A--A----AAT----------------TGG---GTAGGC------A-TTTTTT-TCTTTTCTA-TTT-TTG-TTCT--ATTTTTTTATTTCATGGAGAAAAT-GTCATG-----TAAATGAG-----CTA-------T----A------------ATAAGTAAA----------gcaattgcagataactttata
gi|13 : a---A-AAAA---TTTCA------A--G----ATGCCAAAA----------------ACAC------AAT--G------T-TA-GGGTTGCGACTT-AATTT--------TACGGTCAGTCA---------GGT---------AACCCTTAACACAGT----CTTTTTTTTTTCTGACCTtaga
gi|14 : gtgaaaaaaatAAATAAAAA-AAT--AGGTGCGTTTCAGGTTACACTG-C---CAA-AA---A--A----AATA----G-----G---GTAG---GTAGGTTGGATAA-ATATTT-TTTTTTTTTTTTT-TTT-TTTT--GATaacatgtaatattttggagatggtgttat
gi|15 : agcc-AGAAA-AAT--ACCTGTATTTTGGATTAC-TTGAT---T---TA-C-A--G----AATA----A-----G---GTAG---ATAGAT------A-GGTTTTATATTTATTCATTT-GTT-TTatattgattt
gi|16 : gcc-TA-TGGTCGGAACTG-AAGTT--------TAAGGTCAATCG---------GGT---------GAACCTTAATACAGT----TAATTTTT-GTTTGGCCTCATt
gi|2 : AAA-AAAATGAAT--ACCTTTGCTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AGTA----A-----G---GTAG---GTAGGC------A-ATTTTA-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGACAAAAA-GTCATA-----ATATTGAA-----CTACCGGTAGT----A--------TTTTATAAGCAAA----------CT----TA--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATAA------TG--A--AAGTAAATCAGTAAA--GAACAATACAGA--TA--CAGTTTTCTTGACACG-T------TAAGCACAT----TCGTTCA-GCAATT-TTTCATACTTTT-ACATTT--------AA---A-AAAA---TCCTA------ACAG----ATG--AAAA----------------A---------AAC--A------T-TG-GGATCAGGACCC-ACTTT--------TA---------G---------GGT---------AACCTTAAACACAGG----TATTTTTTTGTTTGGCCTTATC
gi|3 : AAA-AAAAT-A-T--ACCTGTGTTTAAGGCTAC-TTGAC---CAATAA-A-A--A----AAAA----G-----G---GTAATGAGTAG-------------------------------TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-ATCATT-----ATAATGAA-----CTA-------T----------------TATAAGCAAATTGATTTAA-CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTACCAGTATG--A--TAGAAACTCAACAAA--GAACAA--CATG--TA--TAATTTTCTTGACAAA-T------TAAGCAGAT----ATGTTCT-GCAGTT-TTTTGTACTTTT-ACATTT--------TA---T-AATT---TTTTA------A-A-----------AAA----------------ATGTTTTTTTAAC--A------T-TA-GGGTCA--ATTT-AATTT--------TA---------G---------GGTCGGTCTGGTAACCCTAAACACAGG----TA-TTTTTTGTCTGGCCTTATC
gi|4 : agAG-AAAAC-AATTTACCTGTGTTTATGCTTAC-TTGAC---CAA-AA-A-A--A----AA-A----A-----T---G-A------AGGC------A-ATTTT-----------------TT-TTTTTAAATTTTT-ATTTCATGGAGAAAAT-GTCATT-----AT-ATGAA-----CTA-------TTACAA--------ATATATAAGAAAA----------TT----TACCGGTAACTTGATTT-CTATTC-TATAAAC-ACCA----TAATTA------TG--A--T----------------GAACAATACAAA--TA--TATTTTTCTTGCCATA-T------TAAGCAGAT----TTGTTAA-GCAGAT-TTTTGTACTTTA-ACATTT--------TA---A-AAAA---T----------A-AG----ATA--AAAATAATATTTCAATTTGCA---------AAA--AAACCCTT-TA-GGGTTGGG--TC-AGTT--------------------G---------GGT---------AACCTTAAACATGGG----TATTTTTT--TCTGGTCT
gi|5 : -AAAAA-AGT--GCCTGTATTTTGGGTTAC-TTGAC---CAA-AC-A-A--A----TAGAGT--A-----G---GTTG---GTTGGT------A-TTTTTT-TCTTTCTTTTTTT-TTC-TTCT--TATTTTT-ATTTCATGAAGTAAAT--------------------------------------------------TTTA-------A----------CT----TG--------TT--TTTTCTGTTC-AATAAAAAAAC-----TAATTA------TA--A--TAGTAAATCAATAAA--TAAAAATTTAAA--TA--TGATTTT-TAGACACA-T------TAAACAGA---------TCA----------TTACATTTTT-ACATTA--------AA---A-AAAAAAGTTTTT------A-AG----ATG--AAAA----------------A---------AAA--AAATG--T-TA-TGGTTGAGACTG-AACTT--------TAGTGTCGGTCG---------GGT---------AACC-------CAGGAAATTGTTTTTTTCTTT--CCTTA
gi|6 : tg---CAA-AA-A-A--ACCCTGATA----A-----GTTAGTAA---GTAGGC------A-ATTATT-C--TTTCTAAT--------------ATTTTT----TCATGGAGAAAAT-GTCATG-----ATAATGAAGAATTCTG-------T----A----------TTATAAGTAAATTGGTTTTAACT----TG--------TT--TTT-CTATTC-TATAAAA-AAA-----TAATTG------TGTGA--TAGTAAATCAATAAG--GTACAATACAAA--TA--TAATTT--TTGACACA-TTTTTAATAAACAGAT----TTGTTCA-ACAGTT-TTTTATGCTTTT-ACAC---------------G-CAAA---TTTT---------------AT---------------------------------------------T-TA-AGGTCATCACTC-AATTA--------TA---------G---------GGT---------ca
gi|7 : ataggaAAA-AAAAA-AA-----CTGTGTTTAGGGTTAC-TTAAC---CAA-AACA-AATA----AATA----AAACAGG---ATAG---GTAGGG------A-TTTTTT-TCTTTTGTAATTT-TTTCTTCT--TATTTTT-ATTTCATGGAGAAAATGGCCATA-----ATAATGAA-----CTA-------C----T--------ATTcagt
gi|7 : ca----------CT----TA--------TT--TTT-AT-TTCATGGAGAA-AATGGCCATAATAA------TG--AACTACTA--TTAACACATTGAACAATACAAA--TA--CAATTTTTTTGACACA-T------TAAGCA------------CA---AGTT-TTT-GTACTATT-ACATAT--------AA-------------TTTA------A-A-----------AAA----------------A---------ATA--A------T-T-----TCAAGA-TA-TATTT--------TA---------G---------GGT-----------C--------CATG----TA-TTTTTTGTCTGGCCATATaacacattgaacaatacaaatacaatttttttgacacattaagcacaagtttttgtactattacatataatttaaaaaaaataatttcaagatatattttagggtccatgtattttttgtctggccatattaaa
gi|8 : caaaaaaaaaaactgtgtttagggttacttaaccaaaacaaataaataaaacaggataggtagggatttttttcttttgtaattttttcttTA-------T----A----------TTATAAACAAATTAATTTTTACT----TG--------TT--TTT-CTGTTC-TA-AAAT-AAC-----TAATTA------TG--A--TAGTAAATAAA-AAA--GAACAATACAAA--TA--TGATTTTCTTTAC-TATT------TTAGCAGAT----TCGTTCT-GCAGGT-TTTCATACTTTT-ACATTT--------AATTTA-TTTT---TTTTA------A-AG----ATGA-AAAA----------------A---------AAA--A------TGTATGGATTGGGACTC-AGTTT--------TA---------G---------GGTCGGTAGGTAAACTCATAACACA---------------GTCTGGCCTTtaaa
gi|9 : aattttgaatcttggAAA-AAAAA-AA-----CTGTTTTAAGGGTTAC-TTGACTCCCAA-AA-A-A--A----AGGA----AA----G---GTAG---ATAGGC------A-ATTTTT-C---------TTT-TTT-TTCT--AATTTTT-ATTTT-TCGAAAAACT-GTCATA-----ATAA---------CTA-------T----------------TATAATCAAA----------TTGATTTGAACTTTTTTT--TTT-CTATTC-TTTAAAA---T-----T--TTT------TG--A--TAATAAATCAATAAG--AAACAATACAAA--TT--TAATTTTCTTGACACA-T------TAAGCAG----------------AGTTGTTTCGTACTTTT-Agg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTAAAGCATTTTAGTAAAGTAAAGGTCAGCGCCCATGTTAATA
Alignments
lowQualScore : 111 22222222222222 111111 22222222222 111111 11111 888888888888888888888888888888888888888888888888888888888888888 111111111 111111 111111 1111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555555555555555555555
lowQualScore : 4 99 888 4 000 3 444 55 7777 2 22222222222222 666 000000 55 44444444444 3 3 555 4 4 333333 2 11111 111111111111111111111111111111111111111111111111111111111111111 66 4 0 4 555555555 111111 55 55 1 55 55 55 4 4 111111 4444444444 222 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 33 2 44 55555555555555555555555555555555555555555 2 9999999 33
lowQualScore : . .. ... . ... . ... .. .... . .............. ... ...... .. ........... . . ... . . ...... . ..... ............................................................... .. . . . ......... ...... .. .. . .. .. .. . . ...... .......... ... . . . ......................................................................................... . .. . .. ......................................... . ....... ..
lowQualScore : 4 55 999 0 000 6 999 00 7777 2 33333333333333 444 555555 33 33333333333 6 6 666 4 4 999999 0 11111 999999999999999999999999999999999999999999999999999999999999999 11 4 9 0 333333333 555555 55 55 3 55 55 55 1 0 555555 7777777777 555 6 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 88 3 33 99999999999999999999999999999999999999999 5 5555555 55
consensus : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
Reference ( family-45 ) : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
gi|1 : AAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---AAA-AA-ATA--A----AATAGGGTA-----G---GTAG---GTAGGC------ACATTTTT-T-TATTCTAATTTGTTT-TTCT--AA-TTTT-ATTTCATGGAGAAAAT-GACATACTATTATAAAGCA-----TTA-------T-----AGCAACTTGATTTT-AT--TTTAA----------CC----TG--------TT--TTC-CTGTTC-TAT-AAA-ATC-----TGATTA------TG--A--TAGTTAATCAATAAA--GAACAATATAAACTTATTTAATGTT-TTGACACA-T------TAAGCA-ATGTCCTCTTTC--GCAGTT-TTTCATACTTTT-ATATT--------------A-AATG---TTTTGTTTTTTA-AA----AT-----------------------------------T--A------T-T--TGGTTGGGACTA-AATTT--------TA---------GGGTTGGTCAGGT---------AACCCTAAACACAGG----CATTTTTTTGTCGGG
gi|10 : cat-TATAAAG-C-C-----TAATTA------TG--A--AAGTAAATCAATAAA--GAACAAAACAA-------TAATTTACTTGTCGCA-T------ATAGCAGAT----TCATTCC-ATAGTT-TTTCATAATTTT-ACATTA--------AA---A-AAAA-------A------A-AGGAAAATG--AAAA----------------A---------AAACCA------T-AA-GAGTCGGGACTCTAATTTAGGGTCTGTT---------G---------GGT---------CATTCTAATCATAGG----TATTTTTTTGTCTGGCCacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|11 : TTCAAGCAATT-TTTGGTACTTTTTATATTTTTAAAACAAA---ATAAAA---TTT--------A-AG----ATACAAAAA----------------A---------AAC--AG-----T-CA-GTGTTGAAACCC-GATTT--------TA---------G---------GGTTGGTCAGGTAACCCTAACAACAGG----T-TTTTTTT-TCTGGCCTTAaaat
gi|12 : ttcttggaaaaatgttatAAA-AAGAAT-AAA--ACCTCTGTTAAGGGTTAC-TTGATA--CAA-AA-A-A--A----AAT----------------TGG---GTAGGC------A-TTTTTT-TCTTTTCTA-TTT-TTG-TTCT--ATTTTTTTATTTCATGGAGAAAAT-GTCATG-----TAAATGAG-----CTA-------T-----A--------------ATAAGTAAA----------gcaattgcagataactttata
gi|13 : ---A-AAAA---TTTCA------A--G----ATGCCAAAA----------------ACAC------AAT--G------T-TA-GGGTTGCGACTT-AATTT--------TACGGTCAGTCA---------GGT---------AACCCTTAACACAGT----CTTTTTTTTTTCTGACCTtaga
gi|14 : gtgaaaaaaatAAATAAAAA--AAT--AGGTGCGTTTCAGGTTACACTG-C---CAA-AA---A--A----AATA----G-----G---GTAG---GTAGGTTGGATAA-ATATTT-TTTTTTTTTTTTT-TTT-TTTT--GATaacatgtaatattttggagatggtgttat
gi|15 : agcc-AGAAA--AAT--ACCTGTATTTTGGATTAC-TTGAT---T---TA-C-A--G----AATA----A-----G---GTAG---ATAGAT------A-GGTTTTATATTTATTCATTT-GTT-TTatattgattt
gi|16 : gcc-TA-TGGTCGGAACTG-AAGTT--------TAAGGTCAATCG---------GGT---------GAACCTTAATACAGT----TAATTTTT-GTTTGGCCTCATt
gi|2 : AA-AAAAATGAAT--ACCTTTGCTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AGTA----A-----G---GTAG---GTAGGC------A-ATTTTA-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGACAAAAA-GTCATA-----ATATTGAA-----CTACCGGTAGT-----A----------TTTTATAAGCAAA----------CT----TA--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATAA------TG--A--AAGTAAATCAGTAAA--GAACAATACAGA--TA--CAGTTTTCTTGACACG-T------TAAGCACAT----TCGTTCA-GCAATT-TTTCATACTTTT-ACATTT--------AA---A-AAAA---TCCTA------ACAG----ATG--AAAA----------------A---------AAC--A------T-TG-GGATCAGGACCC-ACTTT--------TA---------G---------GGT---------AACCTTAAACACAGG----TATTTTTTTGTTTGGCCTTATC
gi|3 : AA-AAAAA--TAT--ACCTGTGTTTAAGGCTAC-TTGAC---CAATAA-A-A--A----AAAA----G-----G---GTAATGAGTAG-------------------------------TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-ATCATT-----ATAATGAA-----CTA-------T------------------T-ATAAGCAAATTGATTTAA-CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTACCAGTATG--A--TAGAAACTCAACAAA--GAACAA--CATG--TA--TAATTTTCTTGACAAA-T------TAAGCAGAT----ATGTTCT-GCAGTT-TTTTGTACTTTT-ACATTT--------TA---T-AATT---TTTTA------A-A-----------AAA----------------ATGTTTTTTTAAC--A------T-TA-GGGTCA--ATTT-AATTT--------TA---------G---------GGTCGGTCTGGTAACCCTAAACACAGG----TA-TTTTTTGTCTGGCCTTATC
gi|4 : agAG-AAAAC--AATTTACCTGTGTTTATGCTTAC-TTGAC---CAA-AA-A-A--A----AA-A----A-----T---G-A------AGGC------A-ATTTT-----------------TT-TTTTTAAATTTTT-ATTTCATGGAGAAAAT-GTCATT-----AT-ATGAA-----CTA-------TTACAAA----------TAT-ATAAGAAAA----------TT----TACCGGTAACTTGATTT-CTATTC-TATAAAC-ACCA----TAATTA------TG--A--T----------------GAACAATACAAA--TA--TATTTTTCTTGCCATA-T------TAAGCAGAT----TTGTTAA-GCAGAT-TTTTGTACTTTA-ACATTT--------TA---A-AAAA---T----------A-AG----ATA--AAAATAATATTTCAATTTGCA---------AAA--AAACCCTT-TA-GGGTTGGG--TC-AGTT--------------------G---------GGT---------AACCTTAAACATGGG----TATTTTTT--TCTGGTCT
gi|5 : -AAAAA--AGT--GCCTGTATTTTGGGTTAC-TTGAC---CAA-AC-A-A--A----TAGAGT--A-----G---GTTG---GTTGGT------A-TTTTTT-TCTTTCTTTTTTT-TTC-TTCT--TATTTTT-ATTTCATGAAGTAAAT----------------------------------------------------TTT-A-------A----------CT----TG--------TT--TTTTCTGTTC-AATAAAAAAAC-----TAATTA------TA--A--TAGTAAATCAATAAA--TAAAAATTTAAA--TA--TGATTTT-TAGACACA-T------TAAACAGA---------TCA----------TTACATTTTT-ACATTA--------AA---A-AAAAAAGTTTTT------A-AG----ATG--AAAA----------------A---------AAA--AAATG--T-TA-TGGTTGAGACTG-AACTT--------TAGTGTCGGTCG---------GGT---------AACC-------CAGGAAATTGTTTTTTTCTTT--CCTTA
gi|6 : tg---CAA-AA-A-A--ACCCTGATA----A-----GTTAGTAA---GTAGGC------A-ATTATT-C--TTTCTAAT--------------ATTTTT----TCATGGAGAAAAT-GTCATG-----ATAATGAAGAATTCTG-------T-----A----------TT--ATAAGTAAATTGGTTTTAACT----TG--------TT--TTT-CTATTC-TATAAAA-AAA-----TAATTG------TGTGA--TAGTAAATCAATAAG--GTACAATACAAA--TA--TAATTT--TTGACACA-TTTTTAATAAACAGAT----TTGTTCA-ACAGTT-TTTTATGCTTTT-ACAC---------------G-CAAA---TTTT---------------AT---------------------------------------------T-TA-AGGTCATCACTC-AATTA--------TA---------G---------GGT---------ca
gi|7 : ataggaAAA-AAAAA--AA-----CTGTGTTTAGGGTTAC-TTAAC---CAA-AACA-AATA----AATA----AAACAGG---ATAG---GTAGGG------A-TTTTTT-TCTTTTGTAATTT-TTTCTTCT--TATTTTT-ATTTCATGGAGAAAATGGCCATA-----ATAATGAA-----CTAC------T-----A----------TTcagt
gi|7 : ca----------CT----TA--------TT--TTT-AT-TTCATGGAGAA-AATGGCCATAATAA------TG--AACTACTA--TTAACACATTGAACAATACAAA--TA--CAATTTTTTTGACACA-T------TAAGCA------------CA---AGTT-TTT-GTACTATT-ACATAT--------AA-------------TTTA------A-A-----------AAA----------------A---------ATA--A------T-T-----TCAAGA-TA-TATTT--------TA---------G---------GGT-----------C--------CATG----TA-TTTTTTGTCTGGCCATATaacacattgaacaatacaaatacaatttttttgacacattaagcacaagtttttgtactattacatataatttaaaaaaaataatttcaagatatattttagggtccatgtattttttgtctggccatattaaa
gi|8 : caaaaaaaaaaactgtgtttagggttacttaaccaaaacaaataaataaaacaggataggtagggatttttttcttttgtaattttttcttTA-------T-----A----------TT--ATAAACAAATTAATTTTTACT----TG--------TT--TTT-CTGTTC-TA-AAAT-AAC-----TAATTA------TG--A--TAGTAAATAAA-AAA--GAACAATACAAA--TA--TGATTTTCTTTAC-TATT------TTAGCAGAT----TCGTTCT-GCAGGT-TTTCATACTTTT-ACATTT--------AATTTA-TTTT---TTTTA------A-AG----ATGA-AAAA----------------A---------AAA--A------TGTATGGATTGGGACTC-AGTTT--------TA---------G---------GGTCGGTAGGTAAACTCATAACACA---------------GTCTGGCCTTtaaa
gi|9 : aattttgaatcttggAAA-AAAAA--AA-----CTGTTTTAAGGGTTAC-TTGACTCCCAA-AA-A-A--A----AGGA----AA----G---GTAG---ATAGGC------A-ATTTTT-C---------TTT-TTT-TTCT--AATTTTT-ATTTT-TCGAAAAACT-GTCATA-----ATAA---------CTA-------T------------------T-ATAATCAAA----------TTGATTTGAACTTTTTTT--TTT-CTATTC-TTTAAAA---T-----T--TTT------TG--A--TAATAAATCAATAAG--AAACAATACAAA--TT--TAATTTTCTTGACACA-T------TAAGCAG----------------AGTTGTTTCGTACTTTT-Agg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTAAAGCATTTTAGTAAAGTAAAGGTCAGCGCCCATGTTAATA
Alignments
lowQualScore : 111 22222222222222 111111 22222222222 111111 11111 888888888888888888888888888888888888888888888888888888888888888 111111111 111111 111111 1111111111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555555555555555555555
lowQualScore : 4 99 888 4 000 3 444 55 7777 2 22222222222222 666 000000 55 44444444444 3 3 555 4 4 333333 2 11111 111111111111111111111111111111111111111111111111111111111111111 66 4 0 4 555555555 111111 55 55 1 55 55 55 4 4 111111 4444444444 222 3 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 33 2 44 55555555555555555555555555555555555555555 2 9999999 33
lowQualScore : . .. ... . ... . ... .. .... . .............. ... ...... .. ........... . . ... . . ...... . ..... ............................................................... .. . . . ......... ...... .. .. . .. .. .. . . ...... .......... ... . . . ......................................................................................... . .. . .. ......................................... . ....... ..
lowQualScore : 4 55 999 0 000 6 999 00 7777 2 33333333333333 444 555555 33 33333333333 6 6 666 4 4 999999 0 11111 999999999999999999999999999999999999999999999999999999999999999 11 4 9 0 333333333 555555 55 55 3 55 55 55 1 0 555555 7777777777 555 6 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 88 3 33 99999999999999999999999999999999999999999 5 5555555 55
consensus : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
Reference ( family-45 ) : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
gi|1 : AAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---AAA-AA-ATA--A----AATAGGGTA-----G---GTAG---GTAGGC------ACATTTTT-T-TATTCTAATTTGTTT-TTCT--AA-TTTT-ATTTCATGGAGAAAAT-GACATACTATTATAAAGCA-----TTA-------T-----AGCAACTTGATTTT-AT--TTTAA----------CC----TG--------TT--TTC-CTGTTC-TAT-AAA-ATC-----TGATTA------TG--A--TAGTTAATCAATAAA--GAACAATATAAACTTATTTAATGTT-TTGACACA-T------TAAGCA-ATGTCCTCTTTC--GCAGTT-TTTCATACTTTT-ATATT--------------A-AATG---TTTTGTTTTTTA-AA----AT-----------------------------------T--A------T-T--TGGTTGGGACTA-AATTT--------TA---------GGGTTGGTCAGGT---------AACCCTAAACACAGG----CATTTTTTTGTCGGG
gi|10 : cat-TATAAAG-C-C-----TAATTA------TG--A--AAGTAAATCAATAAA--GAACAAAACAA-------TAATTTACTTGTCGCA-T------ATAGCAGAT----TCATTCC-ATAGTT-TTTCATAATTTT-ACATTA--------AA---A-AAAA-------A------A-AGGAAAATG--AAAA----------------A---------AAACCA------T-AA-GAGTCGGGACTCTAATTTAGGGTCTGTT---------G---------GGT---------CATTCTAATCATAGG----TATTTTTTTGTCTGGCCacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|11 : TTCAAGCAATT-TTTGGTACTTTTTATATTTTTAAAACAAA---ATAAAA---TTT--------A-AG----ATACAAAAA----------------A---------AAC--AG-----T-CA-GTGTTGAAACCC-GATTT--------TA---------G---------GGTTGGTCAGGTAACCCTAACAACAGG----T-TTTTTTT-TCTGGCCTTAaaat
gi|12 : ttcttggaaaaatgttatAAA-AAGAAT-AAA--ACCTCTGTTAAGGGTTAC-TTGATA--CAA-AA-A-A--A----AAT----------------TGG---GTAGGC------A-TTTTTT-TCTTTTCTA-TTT-TTG-TTCT--ATTTTTTTATTTCATGGAGAAAAT-GTCATG-----TAAATGAG-----CTA-------T-----A--------------ATAAGTAAA----------gcaattgcagataactttata
gi|13 : ---A-AAAA---TTTCA------A--G----ATGCCAAAA----------------ACAC------AAT--G------T-TA-GGGTTGCGACTT-AATTT--------TACGGTCAGTCA---------GGT---------AACCCTTAACACAGT----CTTTTTTTTTTCTGACCTtaga
gi|14 : gtgaaaaaaatAAATAAAAA--AAT--AGGTGCGTTTCAGGTTACACTG-C---CAA-AA---A--A----AATA----G-----G---GTAG---GTAGGTTGGATAA-ATATTT-TTTTTTTTTTTTT-TTT-TTTT--GATaacatgtaatattttggagatggtgttat
gi|15 : agcc-AGAAA--AAT--ACCTGTATTTTGGATTAC-TTGAT---T---TA-C-A--G----AATA----A-----G---GTAG---ATAGAT------A-GGTTTTATATTTATTCATTT-GTT-TTatattgattt
gi|16 : gcc-TA-TGGTCGGAACTG-AAGTT--------TAAGGTCAATCG---------GGT---------GAACCTTAATACAGT----TAATTTTT-GTTTGGCCTCATt
gi|2 : AA-AAAAATGAAT--ACCTTTGCTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AGTA----A-----G---GTAG---GTAGGC------A-ATTTTA-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGACAAAAA-GTCATA-----ATATTGAA-----CTACCGGTAGT-----A----------TTTTATAAGCAAA----------CT----TA--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATAA------TG--A--AAGTAAATCAGTAAA--GAACAATACAGA--TA--CAGTTTTCTTGACACG-T------TAAGCACAT----TCGTTCA-GCAATT-TTTCATACTTTT-ACATTT--------AA---A-AAAA---TCCTA------ACAG----ATG--AAAA----------------A---------AAC--A------T-TG-GGATCAGGACCC-ACTTT--------TA---------G---------GGT---------AACCTTAAACACAGG----TATTTTTTTGTTTGGCCTTATC
gi|3 : AA-AAAAA--TAT--ACCTGTGTTTAAGGCTAC-TTGAC---CAATAA-A-A--A----AAAA----G-----G---GTAATGAGTAG-------------------------------TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-ATCATT-----ATAATGAA-----CTA-------T------------------T-ATAAGCAAATTGATTTAA-CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTACCAGTATG--A--TAGAAACTCAACAAA--GAACAA--CATG--TA--TAATTTTCTTGACAAA-T------TAAGCAGAT----ATGTTCT-GCAGTT-TTTTGTACTTTT-ACATTT--------TA---T-AATT---TTTTA------A-A-----------AAA----------------ATGTTTTTTTAAC--A------T-TA-GGGTCA--ATTT-AATTT--------TA---------G---------GGTCGGTCTGGTAACCCTAAACACAGG----TA-TTTTTTGTCTGGCCTTATC
gi|4 : agAG-AAAAC--AATTTACCTGTGTTTATGCTTAC-TTGAC---CAA-AA-A-A--A----AA-A----A-----T---G-A------AGGC------A-ATTTT-----------------TT-TTTTTAAATTTTT-ATTTCATGGAGAAAAT-GTCATT-----AT-ATGAA-----CTA-------TTACAAA----------TAT-ATAAGAAAA----------TT----TACCGGTAACTTGATTT-CTATTC-TATAAAC-ACCA----TAATTA------TG--A--T----------------GAACAATACAAA--TA--TATTTTTCTTGCCATA-T------TAAGCAGAT----TTGTTAA-GCAGAT-TTTTGTACTTTA-ACATTT--------TA---A-AAAA---T----------A-AG----ATA--AAAATAATATTTCAATTTGCA---------AAA--AAACCCTT-TA-GGGTTGGG--TC-AGTT--------------------G---------GGT---------AACCTTAAACATGGG----TATTTTTT--TCTGGTCT
gi|5 : -AAAAA--AGT--GCCTGTATTTTGGGTTAC-TTGAC---CAA-AC-A-A--A----TAGAGT--A-----G---GTTG---GTTGGT------A-TTTTTT-TCTTTCTTTTTTT-TTC-TTCT--TATTTTT-ATTTCATGAAGTAAAT----------------------------------------------------TTT-A-------A----------CT----TG--------TT--TTTTCTGTTC-AATAAAAAAAC-----TAATTA------TA--A--TAGTAAATCAATAAA--TAAAAATTTAAA--TA--TGATTTT-TAGACACA-T------TAAACAGA---------TCA----------TTACATTTTT-ACATTA--------AA---A-AAAAAAGTTTTT------A-AG----ATG--AAAA----------------A---------AAA--AAATG--T-TA-TGGTTGAGACTG-AACTT--------TAGTGTCGGTCG---------GGT---------AACC-------CAGGAAATTGTTTTTTTCTTT--CCTTA
gi|6 : tg---CAA-AA-A-A--ACCCTGATA----A-----GTTAGTAA---GTAGGC------A-ATTATT-C--TTTCTAAT--------------ATTTTT----TCATGGAGAAAAT-GTCATG-----ATAATGAAGAATTCTG-------T-----A----------TT--ATAAGTAAATTGGTTTTAACT----TG--------TT--TTT-CTATTC-TATAAAA-AAA-----TAATTG------TGTGA--TAGTAAATCAATAAG--GTACAATACAAA--TA--TAATTT--TTGACACA-TTTTTAATAAACAGAT----TTGTTCA-ACAGTT-TTTTATGCTTTT-ACAC---------------G-CAAA---TTTT---------------AT---------------------------------------------T-TA-AGGTCATCACTC-AATTA--------TA---------G---------GGT---------ca
gi|7 : ataggaAAA-AAAAA--AA-----CTGTGTTTAGGGTTAC-TTAAC---CAA-AACA-AATA----AATA----AAACAGG---ATAG---GTAGGG------A-TTTTTT-TCTTTTGTAATTT-TTTCTTCT--TATTTTT-ATTTCATGGAGAAAATGGCCATA-----ATAATGAA-----CTAC------T-----A----------TTcagt
gi|7 : ca----------CT----TA--------TT--TTT-AT-TTCATGGAGAA-AATGGCCATAATAA------TG--AACTACTA--TTAACACATTGAACAATACAAA--TA--CAATTTTTTTGACACA-T------TAAGCA------------CA---AGTT-TTT-GTACTATT-ACATAT--------AA-------------TTTA------A-A-----------AAA----------------A---------ATA--A------T-T-----TCAAGA-TA-TATTT--------TA---------G---------GGT-----------C--------CATG----TA-TTTTTTGTCTGGCCATATaacacattgaacaatacaaatacaatttttttgacacattaagcacaagtttttgtactattacatataatttaaaaaaaataatttcaagatatattttagggtccatgtattttttgtctggccatattaaa
gi|8 : caaaaaaaaaaactgtgtttagggttacttaaccaaaacaaataaataaaacaggataggtagggatttttttcttttgtaattttttcttTA-------T-----A----------TT--ATAAACAAATTAATTTTTACT----TG--------TT--TTT-CTGTTC-TA-AAAT-AAC-----TAATTA------TG--A--TAGTAAATAAA-AAA--GAACAATACAAA--TA--TGATTTTCTTTAC-TATT------TTAGCAGAT----TCGTTCT-GCAGGT-TTTCATACTTTT-ACATTT--------AATTTA-TTTT---TTTTA------A-AG----ATGA-AAAA----------------A---------AAA--A------TGTATGGATTGGGACTC-AGTTT--------TA---------G---------GGTCGGTAGGTAAACTCATAACACA---------------GTCTGGCCTTtaaa
gi|9 : aattttgaatcttggAAA-AAAAA--AA-----CTGTTTTAAGGGTTAC-TTGACTCCCAA-AA-A-A--A----AGGA----AA----G---GTAG---ATAGGC------A-ATTTTT-C---------TTT-TTT-TTCT--AATTTTT-ATTTT-TCGAAAAACT-GTCATA-----ATAA---------CTA-------T------------------T-ATAATCAAA----------TTGATTTGAACTTTTTTT--TTT-CTATTC-TTTAAAA---T-----T--TTT------TG--A--TAATAAATCAATAAG--AAACAATACAAA--TT--TAATTTTCTTGACACA-T------TAAGCAG----------------AGTTGTTTCGTACTTTT-Agg
blockSeqs : T TG TTT A TCC T CA AT CCCT T AAACAGG TGA TGGATA T ATATTTATTCA . C TAA T G G T GAATT TTACAAATATATAAGAAAATTTACCGGTAAC GA T A AATGGCCA CCAGTA TG AC T TT . . C T TTTTAA GATTCA AAG G C T TTAAAAAATAAGATAAAAATAATATTTCAATTTGCAAAAAAACCCT G AT G CT TAGGGTTGGTCAGGT A AAATTGT TG
blockSeqs : . T A . A . A . . T AGTTA . . A TTTTTTTTTT . . A . . A T . TATTATAAGTAAATTGGTTTTAACTTG . . . ACCA . . . T . . . C . . CATTCG CA . G . TTTAAAACAAAATAAAATTTAAGATACAAAAAAAACAG . A A C TACGGTCAGTCAGGT A TAT TT
blockSeqs : . . T . . . C . . T GTAG . . G TCTTTTCTAA . . G . . T T . TATTATAAACAAATTAATTTTTACTTG . . . AAAC . . . C . . . C . . GATATG AG . C . AAAAAAAAAAGTTTTTAAGATGAAAAAAAAAAATG . A C T TAAGGTCAATCGGGT T CTT TG
blockSeqs : . . T . . . A . . T AAG . . A TCTTTCTTTT . . A . . T T . TTATAATCAAATTGATTTGAACTTTTT . . . AAC . . . T . . . C . . GATTTG TG . T . TTATAATTTTTTAAAAAAATGTTTTTTTAACA . A G G TAGGGTCGGTCTGGT T TAA TG
blockSeqs : . . T . . . A . . A GG . . A TCTTTTGTAA . . A . . G T . CCGGTAGTATTTTATAAGCAAACTTA . . . AAC . . . T . . . T . . GATTTG AG . T . TAATTTATTTTTTTTAAAGATGAAAAAAAAAA . A G C TAGTGTCGGTCGGGT A TAT TC
blockSeqs : . . T . . . A . . G AG . . T TCTTTTCTA . . T . . A T . TTATAAGCAAATTGATTTAACTTG . . . AAA . . . C . . . C . . GATTCG AA . T . AAAAAAAAAAAGGAAAATGAAAAAAAACCA . G G T TAGGGTCGGTAGGTA A TAT TG
blockSeqs : . . T . . . A . . T AG . . A CTTTCTAA . . T . . A . . TTTAACTTG . . . AAC . . . T . . . C . . GA TG . T . TAAAAAAATCCTAACAGATGAAAAAAACA . A A C AGGGTCTGTTGGGT A TT T
blockSeqs : . . . . . . A . . T GG . . T C . . A . . . . . . . . CC . . . . . . . . . . G A . C . TAATTTAAAAAAAATAA . A T G TAGGGT T TA G
blockSeqs : . . . . . A . . G AT . . A . . . . . T . . . . . . . . . . . A . C . GCAAATTTTAT . A A C TAGGGT . TA G
blockSeqs : . . . . . . . . . . . . . . . . . . A G A TAGGGT . . .
blockSeqs : . . . C GGGT
blockSeqCons : A** AG************ A* TCTTTTTTA** N***** ** ** GATTCG**** NG* A*
originalCons : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-ATTTTT-TCTTTTCTAATTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATA-----ATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCA-GCAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
finalCons : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AAA--A--A----AATAAG------------GTAG---GTAGGC------AA-TTTTTTCTTTTTTA--TTT-TTT-TTCT--AATTTTT-ATTTCATGGAGAAAAT-GTCATN-----ATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGATTCG----TTCNG-CAGTT-TTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTAAAGCATTTTAGTAAAGTAAAGGTCAGCGCCCATGTTAATA
Alignments
lowQualScore : 111 22222222222222 111111 3333333333333 11111 11111 888888888888888888888888888888888888888888888888888888888888888 111111111 111111 111111 111111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555555555555555555555
lowQualScore : 4 99 888 4 000 3 444 55 7777 2 22222222222222 666 000000 55 3 8888888888888 3 3 7777 4 11111 2 2 11111 111111111111111111111111111111111111111111111111111111111111111 66 4 0 4 555555555 111111 55 55 1 55 55 55 4 4 111111 444444444444 2 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 33 2 44 55555555555555555555555555555555555555555 2 9999999 33
lowQualScore : . .. ... . ... . ... .. .... . .............. ... ...... .. . ............. . . .... . ..... . . ..... ............................................................... .. . . . ......... ...... .. .. . .. .. .. . . ...... ............ . . ......................................................................................... . .. . .. ......................................... . ....... ..
lowQualScore : 4 55 999 0 000 6 999 00 7777 2 33333333333333 444 555555 33 6 0000000000000 6 6 2222 4 11111 6 0 11111 999999999999999999999999999999999999999999999999999999999999999 11 4 9 0 333333333 555555 55 55 3 55 55 55 1 0 555555 000000000000 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 88 3 33 99999999999999999999999999999999999999999 5 5555555 55
consensus : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-AT-TTTT-TCTTT-TTTA--TTT-TTT-TTCT--A-ATTTTTATTTCATGGAGAAAAT-GTC-----ATNATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTC--GCAGTTTTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
Reference ( family-45 ) : AAA-AAAAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AATA----A-----G---GTAG---GTAGGC------A-AT-TTTT-TCTTT-TTTA--TTT-TTT-TTCT--A-ATTTTTATTTCATGGAGAAAAT-GTC-----ATNATAATGAA-----CTA-------T-----A----------TTT-ATAAGCAAA----------CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTA------TG--A--TAGTAAATCAATAAA--GAACAATACAAA--TA--TAATTTTCTTGACACA-T------TAAGCAGAT----TCGTTCN-GCAGTTTTTCGTACTTTT-ACATTT--------AA---A-AAAA---TTTTA------A-AG----ATG--AAAA----------------A---------AAN--A------T-TA-GGGTCGGGACTC-AATTT--------TA---------G---------GGT---------AACCCTAAACACAGG----TATTTTTTTGTCTGGCCTTATC
gi|1 : AAA--AAT--ACCTGTGTTTAGGGTTAC-TTGAC---AAA-AA-ATA--A----AATAGGGTA-----G---GTAG---GTAGGC------ACAT-TTTT-TTATT-CTAA--TTTGTTT-TTCT--A-A-TTTTATTTCATGGAGAAAAT-GACATACTATTATAAAGCA-----TTA-------T-----AGCAACTTGATTTT-AT--TTTAA----------CC----TG--------TT--TTC-CTGTTC-TAT-AAA-ATC-----TGATTA------TG--A--TAGTTAATCAATAAA--GAACAATATAAACTTATTTAATGTT-TTGACACA-T------TAAGCA-ATGTCCTCTTTC--GCAGTTTTTCATACTTTT-ATATT--------------A-AATG---TTTTGTTTTTTA-AA----AT-----------------------------------T--A------T-T--TGGTTGGGACTA-AATTT--------TA---------GGGTTGGTCAGGT---------AACCCTAAACACAGG----CATTTTTTTGTCGGG
gi|10 : cat-TATAAAG-C-C-----TAATTA------TG--A--AAGTAAATCAATAAA--GAACAAAACAA-------TAATTTACTTGTCGCA-T------ATAGCAGAT----TCATTCC-ATAGTTTTTCATAATTTT-ACATTA--------AA---A-AAAA-------A------A-AGGAAAATG--AAAA----------------A---------AAACCA------T-AA-GAGTCGGGACTCTAATTTAGGGTCTGTT---------G---------GGT---------CATTCTAATCATAGG----TATTTTTTTGTCTGGCCacacatgtttattgtttaatggtattgcaaggtcaaggtctctgttaataa
gi|11 : TTCAAGCAATTTTTGGTACTTTTTATATTTTTAAAACAAA---ATAAAA---TTT--------A-AG----ATACAAAAA----------------A---------AAC--AG-----T-CA-GTGTTGAAACCC-GATTT--------TA---------G---------GGTTGGTCAGGTAACCCTAACAACAGG----T-TTTTTTT-TCTGGCCTTAaaat
gi|12 : ttcttggaaaaatgttatAAA-AAGAAT-AAA--ACCTCTGTTAAGGGTTAC-TTGATA--CAA-AA-A-A--A----AAT----------------TGG---GTAGGC------A-TT-TTTT-TCTTT-TCTA--TTT-TTG-TTCT--ATTTTTTTATTTCATGGAGAAAAT-GTC-----ATGTAAATGAG-----CTA-------T-----A--------------ATAAGTAAA----------gcaattgcagataactttata
gi|13 : ---A-AAAA---TTTCA------A--G----ATGCCAAAA----------------ACAC------AAT--G------T-TA-GGGTTGCGACTT-AATTT--------TACGGTCAGTCA---------GGT---------AACCCTTAACACAGT----CTTTTTTTTTTCTGACCTtaga
gi|14 : gtgaaaaaaatAAATAAAAA--AAT--AGGTGCGTTTCAGGTTACACTG-C---CAA-AA---A--A----AATA----G-----G---GTAG---GTAGGTTGGATAA-ATATTTT-TTTTT-TTTT--TTT-TTT-TTTT--G-ATaacatgtaatattttggagatggtgttat
gi|15 : agcc-AGAAA--AAT--ACCTGTATTTTGGATTAC-TTGAT---T---TA-C-A--G----AATA----A-----G---GTAG---ATAGAT------A-GG-TTTTATATTTATTCA--TTT-GTT-TTatattgattt
gi|16 : gcc-TA-TGGTCGGAACTG-AAGTT--------TAAGGTCAATCG---------GGT---------GAACCTTAATACAGT----TAATTTTT-GTTTGGCCTCATt
gi|2 : AA-AAAAATGAAT--ACCTTTGCTTAGGGTTAC-TTGAC---CAA-AA-A-A--A----AGTA----A-----G---GTAG---GTAGGC------A-AT-TTTA-TCTTT-TCTAA-TTT-TTT-TTCT--A-ATTTTTATTTCATGGACAAAAA-GTC-----ATAATATTGAA-----CTACCGGTAGT-----A----------TTTTATAAGCAAA----------CT----TA--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATAA------TG--A--AAGTAAATCAGTAAA--GAACAATACAGA--TA--CAGTTTTCTTGACACG-T------TAAGCACAT----TCGTTCA-GCAATTTTTCATACTTTT-ACATTT--------AA---A-AAAA---TCCTA------ACAG----ATG--AAAA----------------A---------AAC--A------T-TG-GGATCAGGACCC-ACTTT--------TA---------G---------GGT---------AACCTTAAACACAGG----TATTTTTTTGTTTGGCCTTATC
gi|3 : AA-AAAAA--TAT--ACCTGTGTTTAAGGCTAC-TTGAC---CAATAA-A-A--A----AAAA----G-----G---GTAATGAGTAG----------------------------------TTT-TTCT--A-ATTTTTATTTCATGGAGAAAAT-ATC-----ATTATAATGAA-----CTA-------T------------------T-ATAAGCAAATTGATTTAA-CT----TG--------TT--TTT-CTGTTC-TATAAAA-AAC-----TAATTACCAGTATG--A--TAGAAACTCAACAAA--GAACAA--CATG--TA--TAATTTTCTTGACAAA-T------TAAGCAGAT----ATGTTCT-GCAGTTTTTTGTACTTTT-ACATTT--------TA---T-AATT---TTTTA------A-A-----------AAA----------------ATGTTTTTTTAAC--A------T-TA-GGGTCA--ATTT-AATTT--------TA---------G---------GGTCGGTCTGGTAACCCTAAACACAGG----TA-TTTTTTGTCTGGCCTTATC
gi|4 : agAG-AAAAC--AATTTACCTGTGTTTATGCTTAC-TTGAC---CAA-AA-A-A--A----AA-A----A-----T---G-A------AGGC------A-AT-TTTT-------------------T-TTTTTAA-ATTTTTATTTCATGGAGAAAAT-GTC-----ATTAT-ATGAA-----CTA-------TTACAAA----------TAT-ATAAGAAAA----------TT----TACCGGTAACTTGATTT-CTATTC-TATAAAC-ACCA----TAATTA------TG--A--T----------------GAACAATACAAA--TA--TATTTTTCTTGCCATA-T------TAAGCAGAT----TTGTTAA-GCAGATTTTTGTACTTTA-ACATTT--------TA---A-AAAA---T----------A-AG----ATA--AAAATAATATTTCAATTTGCA---------AAA--AAACCCTT-TA-GGGTTGGG--TC-AGTT--------------------G---------GGT---------AACCTTAAACATGGG----TATTTTTT--TCTGGTCT
gi|5 : -AAAAA--AGT--GCCTGTATTTTGGGTTAC-TTGAC---CAA-AC-A-A--A----TAGAGT--A-----G---GTTG---GTTGGT------A-TT-TTTT-TCTTT-CTTT--TTT-TTTCTTCT--T-ATTTTTATTTCATGAAGTAAAT----------------------------------------------------TTT-A-------A----------CT----TG--------TT--TTTTCTGTTC-AATAAAAAAAC-----TAATTA------TA--A--TAGTAAATCAATAAA--TAAAAATTTAAA--TA--TGATTTT-TAGACACA-T------TAAACAGAT-------------CA-----TTACATTTTT-ACATTA--------AA---A-AAAAAAGTTTTT------A-AG----ATG--AAAA----------------A---------AAA--AAATG--T-TA-TGGTTGAGACTG-AACTT--------TAGTGTCGGTCG---------GGT---------AACC-------CAGGAAATTGTTTTTTTCTTT--CCTTA
gi|6 : tg---CAA-AA-A-A--ACCCTGATA----A-----GTTAGTAA---GTAGGC------A-AT-T-------------A--TTC-TTT---CT--A-ATATTT-TTTCATGGAGAAAAT-GTC-----ATGATAATGAAGAATTCTG-------T-----A----------TT--ATAAGTAAATTGGTTTTAACT----TG--------TT--TTT-CTATTC-TATAAAA-AAA-----TAATTG------TGTGA--TAGTAAATCAATAAG--GTACAATACAAA--TA--TAATTT--TTGACACA-TTTTTAATAAACAGAT----TTGTTCA-ACAGTTTTTTATGCTTTT-ACAC---------------G-CAAA---TTTT---------------AT---------------------------------------------T-TA-AGGTCATCACTC-AATTA--------TA---------G---------GGT---------ca
gi|7 : ataggaAAA-AAAAA--AA-----CTGTGTTTAGGGTTAC-TTAAC---CAA-AACA-AATA----AATA----AAACAGG---ATAG---GTAGGG------A-TT-TTTT-TCTTT-TGTAATTTT-TTC-TTCT--T-ATTTTTATTTCATGGAGAAAATGGCC-----ATAATAATGAA-----CTAC------T-----A----------TTcagt
gi|7 : ca----------CT----TA--------TT--TTT-AT-TTCATGGAGAA-AATGGCCATAATAA------TG--AACTACTA--TTAACACATTGAACAATACAAA--TA--CAATTTTTTTGACACA-T------TAAGCACA---------------AGTTTTT-GTACTATT-ACATAT--------AA-------------TTTA------A------------AAAA----------------A---------ATA--A------T-T-----TCAAGA-TA-TATTT--------TA---------G---------GGT-----------C--------CATG----TA-TTTTTTGTCTGGCCATATaacacattgaacaatacaaatacaatttttttgacacattaagcacaagtttttgtactattacatataatttaaaaaaaataatttcaagatatattttagggtccatgtattttttgtctggccatattaaa
gi|8 : caaaaaaaaaaactgtgtttagggttacttaaccaaaacaaataaataaaacaggataggtagggatttttttcttttgtaattttttcttTA-------T-----A----------TT--ATAAACAAATTAATTTTTACT----TG--------TT--TTT-CTGTTC-TA-AAAT-AAC-----TAATTA------TG--A--TAGTAAATAAA-AAA--GAACAATACAAA--TA--TGATTTTCTTTAC-TATT------TTAGCAGAT----TCGTTCT-GCAGGTTTTCATACTTTT-ACATTT--------AATTTA-TTTT---TTTTA------A-AG----ATGA-AAAA----------------A---------AAA--A------TGTATGGATTGGGACTC-AGTTT--------TA---------G---------GGTCGGTAGGTAAACTCATAACACA---------------GTCTGGCCTTtaaa
gi|9 : aattttgaatcttggAAA-AAAAA--AA-----CTGTTTTAAGGGTTAC-TTGACTCCCAA-AA-A-A--A----AGGA----AA----G---GTAG---ATAGGC------A-AT-TTTT-C-----------TTT-TTT-TTCT--A-ATTTTTATTTT-TCGAAAAACT-GTC-----ATAATAA---------CTA-------T------------------T-ATAATCAAA----------TTGATTTGAACTTTTTTT--TTT-CTATTC-TTTAAAA---T-----T--TTT------TG--A--TAATAAATCAATAAG--AAACAATACAAA--TT--TAATTTTCTTGACACA-T------TAAGCAGAG----TTGTT-----------TCGTACTTTT-Agg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTAAAGCATTTTAGTAAAGTAAAGGTCAGCGCCCATGTTAATA