lowQualScore : 1111111111111111111111111111111111111111111111111 111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 2222222 111 5555555555555555555555555555555555555555555555555 111111111 1 111111111 44444 1 222222 11 2222 1111 1111111111111 111111111 5555555555555555555 111111 55555555555555555555 1111 1111 333333333333333333333333333333333333 22 11 111111 1 5555555555555555555 4 22222222 11 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222 1 111
lowQualScore : 0 5 7 8888888 999 5 7777777777777777777777777777777777777777777777777 444444444 777 1 0 777 4 444444444 22222 4 0 777 4 55 4 4 555555 4 55 3 9999 66 55 1111 6666666666666 333333333 8 5 2 66 8888888888888888888 3 888888 77 1 55555555555555555555 66 0 5 5555 0000 777777777777777777777777777777777777 3 77 8 33 888888 5 6 1111111111111111111 3 0 6 6 1 888 44444444 9999 66 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 55555 66 7 4 4 222 4 6 3 2
lowQualScore : . . . ....... ... . ................................................. ......... ... . . ... . ......... ..... . . ... . .. . . ...... . .. . .... .. .. .... ............. ......... . . . .. ................... . ...... .. . .................... .. . . .... .... .................................... . .. . .. ...... . . ................... . . . . . ... ........ .... .. ................................................................................... . ..... .. . . . ... . . . .
lowQualScore : 0 0 0 2222222 777 2 1111111111111111111111111111111111111111111111111 555555555 444 8 9 888 0 000000000 66666 8 0 000 0 44 0 0 000000 0 99 2 6666 33 00 4444 9999999999999 111111111 2 2 2 66 4444444444444444444 0 999999 99 7 44444444444444444444 99 2 0 2222 6666 999999999999999999999999999999999999 7 77 0 33 444444 3 0 2222222222222222222 2 0 0 0 0 888 22222222 5555 22 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 44444 99 0 4 4 333 4 2 3 2
consensus : GAGG-GC-GTTCAATAAGTAAT------GTTATTCG--TCCCAT-------AAAT------C-TGAA-A-------TG------T--NAAT-CGTG---------AAATTTCACAGTCAGATAGATTTATTTGTTGTGCA-TCCGA-----TGATACCAACAAACAAATCGTGCGATTTCC---AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTA-NA-CACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCT-GCTAAA--TGCGC--TCANATACGGAGCTGT----A----TGNATGCGCGTTGCACAAGTGGAGTAC-GT--GCAT---CGCA---T-TTA--TT-TATA--TGTATATGGTA-ATAG---CAA----GAAA---A---------A----ACA----TTAGGT-----TTTCGAGCCCCATAG-AAAGAATGGCA-GCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAAAA--------CAGACTATGAAG-ACATATT----------TNGGAAATTGTT-AGNAANATTGAAAAAGTGCATTTC-----GTTAAAGGAGATA-ACTTTG-AAGG--TGAACCAAATATTATCAAGATATTATT--TGTTG-T-TTTTATTTT--ATTA-CCAATATAACATT-ACTTATTGAACGCCCCTCGC
Reference ( gi|2 ) : GAGG-GC-GATCAATAAGTAAA------GTTATTCG--ACTCA--------AAAT------C-TG-----------TG------T--TAAA-CGTG---------AAATTTCACAGTCAGATAGATTTTTTTGTTGTGTA-TCCGA-----TGATACCAAGGTATAAATCGTGCGAGTTTC---AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTA-AT-CACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCA-GCTAAA--TATGT--TCACATGCGGAACTGT----A----TGCATAGGCTTTGCACAAGTGGAGCAT-GT--GCAT---AGCA---T-TTA--TT-TATA--TGTATATGGTA-ATAG---CAA----GAAA---A---------A----AC-----TT---------TTTCGA-CCCCAAAC-AAAGAATGGCA-TTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAGTGTGGT-TTTTAATGTCTAACGGGTATACACAAAA--------CAGACTATAAAT-ACATATT----------TAAGACGCTGT--AGTAATATTGAAAAAGTGCATTGC----AGTTAAAGGAGATA-ACTTTG-AAGGAATGTACCAAATATTATCAAAATATAATT--TGTAG-T-TTTTATTTT--GTTA-CCAATATAACAAT-ACTTATTGAATGCCCCTCGC
gi|11 : GAGGAGC-ATTCAATAAGTAAT------GTTTTTCA--CCACAT-------AAATTATGAAC-CGTAAACA-----TG------T--AAAT-CATG---------AAATTTCCCAGTCGGATAGAATTATTTGTTTTGCA-TCTGA-----TGATACCAGCAAACAAATTGTGCGAGTTCT---AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATA-TA-CACTG-TAGTGAAGTATAGTT--GG----AG-----AACATCT-GCTAAATTTATGTGCTCAGATACAGAGTTGC----A----TGAATGCGTGTTGCATA
gi|6 : GAGGAGC-ATTCAATAAGTAAT------GGTATTCGTAACATA--------AAGT------A-TGAACAGCGAACATG------T--CAAT-TGTG---------AAATTTCGCAGTCAGATTGATTTATTAATTAAGCA-TCCTA-----TGATATCAGCAAATAAATTGTGTGA-TTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTA-CA-CACTG-TAGTCAAATGTGGTT---A----AA-----AAGA-CATGTTAAA--TCTAC--TCAAATcatcaca
gi|8 : cAGG-GCAGTTCAATAAGTAAT------ATTATTTG--TCCCATATATTATGAAC------CATGAACA-------TG------T--AAAT-CGGG---------AAATTTCA--GTCAGATAGATTTATTTGTTATACA-TCCGA-----CGATACCGA-------------CAATTTTC---AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCA-G-ATACACTG-CAGTCAAGTATATCT--GGA---AA-----AAGAGCT-GCCAAG--TGTGC--TTAAATACGCAGATAT----A----TGAATGCATGTTGCATTATTAGACTAA-GT--AC-----AGT-----------TT-TATA--TGTATACAGTA-ATAG---AAA----GAAA---A---------C----AT-----TA---------GTTC---------AC-AA-------TT-TCAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAtcaaatatggatgaaaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|10 : GG-GC-GTTCAATAAGTAAT------GTTATTCG--TCCCATT------AATT------A-TGAACAGTTAATATG------T--AAAT-CGTA---------AAATTTCATAG
gi|7 : gagGG-GC-GTTTAACAAGTAAATCAAATGTTATTCG--TTTCAT-------AAATTATGAAC-CGCGAAAA-----TG------T--AAAC-CGTT---------CAATTACACGGTCCGATAGATTTATT--------A-T---A-----TGATACCAGCACACATATCGTGCGATTTCC---AGTAT-AT-T-TGTT-ATCGTAGTCTCTGAC-ATATACAGTTGTA-TA-CAATGAAAAAAAAATAAAGTT--GG----AA-----A--AATA-GCTACA-----------ACA---------------A----TGC----GCGTTAAACACGTGGATTATCGTCATCAT---AGAA---TATCA-----TATA--TGTGTA--GTA-ATAG----AACTATGAAA---A---------GT---GC-----TTAAGTA----TTTCAAGTCCCAAAC-AAAGATCGCCAGTTAAcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|9 : gGG-GC-GTTCAATAAGTAAT------GTTATTCG--TCCCA--------A-----------------------------------T----CGTG---------AAATTTTA--ATTAGTTAGGTTTTATTGTTGTGCA-T-----------------------------TGCAATTTCC---AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTA-GA-CACTG-AAGTCATATCAAATTTCTA----AA-----AAGAACT-GCTAagagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|16 : gagGG-GC-GTTCAATTAGTAAT------GTTATTCG--TCCCA--------TAAA------C-Ttagtcagaatgaagcctaggaaaagttgcacgtggcatcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
gi|3 : ttacgac-GC-GTTCAAAAAGTATT------GTTATTCG--TCCCAT-------AAAT------TATGAAAAG------TGAACATTT--TAAT-CGTG---------AAATTTCACAGTCAAACATATTTATTTGTTGCGCA-TACGA-----TGATACCAACATACAAATCGTTCGAGTTCG---AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTATAT--ACTG-CAGTCAAATATTGTT--GG----AA-----AATAGCT-GCTAGA--TGCGT--T---ATACAGAGCTGT----A-----GCA---------CACAAGTGGGGTAC-GT--GCTTCTCAGAA---T-T----TT-TATG--TGTTTATGATATATAG---CAA----GAAA---A---------agt
gi|1 : TCAATAAGAAAT------GTAATTCA--TCTCAC-------AAAT--------TA-----------TGAA----TCGTAAA-CATGCAAATCGTAAAGTTTGACAGTCAGATATATTTATTTGTTG-----------------ATACCAATAAACAAATCGTACGAGTTTC---AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTA-TA-CGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAATAACT-GCTAAA--TGTGT--TCATATACGAGACTGT----A----TGAGTGTCCATTGCACAAGTGA------GT--GAAT---CGCAGATT-TTAATTTGTACA--TGTATATGGCA-ATAA---TAA----GTAC---ATTACATATTAGTTCAC-----TT---------TTTTGAGCCCCATAG-AAAGAATAACA-GTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGCTATACACACAG--------CAGACTATTAAG-ACAAACT----------TGAGAAAGTGTT-AGAAAGATTGAAAA-GTGTATTTC----TGTTAAAG---ATA-----TG-AA--------CCAAATATTATCAAGATATTCTT--TGTTA-TATTTTATTTT--ATTA-CCAATATAACAAA-ACTTATTGAACTCCCTTCGCttgaacagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgtggtatttcagtgtatgttgggtatatacaaaaccaactatgaagacatatctcggaagttatttaaaaaggttattttgaaggagtgaacaaattttatcaagatattcggcgttgtttttattgtgttagcaatacaaaaatacttattgaacgtccctcg
gi|12 : gaagtCAATAA-TAA-------GTTATTCG--TCCCAT-------GAAT---------------------TA------T--CAAC-CGTG---------AA----------TATATAAATTGTA--ATTGTTTAGTCAGAAATATTGATACCAACAAACAAATATTGAAATTTTC---AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-A--CACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAAAGCT-TCTAAA--TGTGC--TCGTATG
gi|4 : acaatgagcgtttattaagttaaatataaata-TA-----------TG------T--AAAT-TGTG---------AAATTTC-------GGTAGATTTATCTGTTGTGCA-TCTGA-----TGATACCAACAAACAATGTGTGCAGTTTTC---AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGT----------------------TATA-TT--GA----AA----------------AAA--TGTTC--TCAAATATAGAGATGTATCAA----TGCATA----TTGTGCAA-CAGGGTAT-GT--GCAT---CACA---G-ATAT-TT-TATATCTATATATTGTG-ATAG---AAA----GAAATTTG---------A----ACA----TTAGTTCACAATTTCAAGCCCCATAG-AAAGAATGGCA-GCAAAATATGGCCACCAAAGACAG--GAA------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAAAA--------CAGAC---GAGG-ACATAATCTGGAAATGGTAAAAGACTG---AACA--ACTGAACAAGTGCATTTCTGTTAATTAAAGG-GACATACATTGTAA-------ACCAAAAAGTGTGAACAT-T--TT--TGTTG-T-TTGCATTTT--ATTA-CCAATATTATAACAACTTACTGAACATCCCTtataagtttaaatcccacatgt
gi|5 : agggacatttaaaaagtaatgttgttcttcccttaaattgtgagccatgaaAAATCGTG---------ATATATCACAGTCAGAGAGATTTATTTGTTGCGTA-TCCGA-----TTATACCAAA--ACAAATAGTGCAATTTCC---AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTA-TA-CACCG-TAACTAAATATAGTT--GA----AA-----AAGAGCT-GCTAAA--taa
gi|6 : TCAAATATGGAT--GA----AA-----AAG-TCACATTAAA--T-CAC--TCAAATACTGAGCTAC----ACGATTGCACGA----TGCACAAGTCGAGTAA-GT--GCAT---CACAAA-T-TTT--CA-TATA--TGTATATAGTA-ATAGAAATAA----GATG---A---------A----ACATTGGTTCAACA----TTTCGA-GCCTAAAAGAAAGAATGGAA-GCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAcgaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|9 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatA-GGTAAA--TGCGT--TCACATATGGAGCTAT----A----TAAGTGCACGTTGCACAAATGGAATAC-GC--GCAT---CGCA---G-ATT--TT-CATA--TGTATATGG----TAG---CAA----GAAA---A---------
gi|5 : gaggggcgttcaataagtaatgttattcgtcccaatcgtgaaattttaattagttaggttttattgttgtgcattgcaatttccagaagactttatcgtagtcttgatcacatagagtcgtagacactgaagtcatatcaaatttctaaaaagaactgctatagtcagaatgaagcctaggaaaagttgcacgtggcatcgtctgtacagaaacggttgccgtcatactcagttagttagatgccca--TT-CATA--TGGATATGGTA-AAAG---CAA----GAAA---ATTT------A----ACA----TTAGGTCACTATTCCGAGCTCCATAG-ATAGAATGGCA-ACAGAAAATAACCACCAAA-ACAGA----------------------C-GAAGCGTGGTATTTCAGTGTGTGATGGGTGTACACAAAA--------CAGACT-TAGACGATAAATT----------TAGGA-ATTGTTAAAAAAAATGAAAAAAGTGTATTTC-----TTTCAAGGATATT-ACTTTG-AAGATATGAACCAACTATTATCAAGATATTATT--TGTTGCT-TTTTATTTT--ATTA-CAAATATAACAAT-ACATTTTGAACGCCCCTCttaaa
gi|10 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaatcgcaaattATAGCG-GCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAGTTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAAT-ACATATT----------TCGGAAGTTATTAAAAAAGATTAAAAAGGTGCATTTA----TGTCAAAAGAAATA-AATATG-AACGAATGAACCAAATATTATCAAAA---AAGT--TGTTG-T-TTTTATTTT--ATTA-ACAATATAACAAC-ACTTATTGATCGCCCCTTG
gi|3 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcTGTGGTATTTCAGTGTATGTTGGGTATATACAAAA--------CCAACTATGAAG-ACATATC----------TCGGA--------AGT--TATTTAAAAAG-------------GTTA-----------TTTTG-AAGGAGTG-AACAAATTTTATCAAGATAT--TCGGCGTTG-T-TTTTATTGT--GTTA-GCAATACAAAAAT-ACTTATTGAACGTCCCTCGt
gi|13 : gcgttcaaaaagtattgttattcgtcccataaattatgaaaagtgaacattttaatcgtgaaatttcacagtcaaacatatttatttgttgcgcatacgatgataccaacatacaaatcgttcgagttcgagagttcgttttatcgtagccttggtaacatatagtcgtatatactgcagtcaaatattgttggaaaatagctgctagatgcgttatacagagctgtagcacacaagtggggtacgtgcttctcagaatttttatgtgtttatgatatatagcaagaaaattgaacagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatTCAGTGTCCGATAGATATACACAAAA--------CGGACTACGAGG-ACATAT--------------AACG--GA--AGTGGT--T-AAAAAG---ACTGA----AAATGG-GGAGATT-ACTTTG-AAGGTTTGGACTTAATATTATCAAGAAAGTGTT--TGTTG-T-TTTTATTTG--ATTA-CCAATATAACATT-ACTTATTGAACGTCCTTCG
gi|14 : CTAAATATTATCAAGACAGTATT--TGTTG-T-TTTCATTAC---TTAGCCAATATAACATT-ACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGT--TGTTG-T-TTTCATTCT--ATTA-CCAATATGACATT-ACTTATTAAGCGTACCTCa
gi|6 : G-T-TCATACTTTATGTTA-CGAATAC--CATT-ACTTATTGAATGCTCCTCG
gi|10 : ATAACATT-ACTTATTGAACGCCCCTCagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaattcaaatatggatgaaaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|9 : ATAACATT-ACTTATTGAACGCCCCTCtcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcatagcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : AACATT-ACTTATTGAATGCTCCTCtcgtcccaatcgtgaaattttaattagttaggttttattgttgtgcattgcaatttccagaagactttatcgtagtcttgatcacatagagtcgtagacactgaagtcatatcaaatttctaaaaagaactgctatagtcagaatgaagcctaggaaaagttgcacgtggcatcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 1111111 000000000000000000000000000000000 111111 1 11111 11111111 44444444444444444444 1111 5555555555555555555555555555555 222222222222222222222222 22222222 22222222222 3333333333333333333333333333333333333 1
lowQualScore : 8 3 999999 0 0000000 3 555555555555555555555555555555555 000000 2 3 5555 3 2 5 2 999999999 0 0 3 55 3 44 3 3 0 0 3 22222 44 00000000 88888 3 3 3 6666 666 6 1 4 77 2 7777 1 0 0 7 88 1 00000000000000000000 0 4 2222 9999 4 6666666666666666666666666666666 1 0 5 0 1 22 999999999999999999999999 00000000 1 0 1 11111111111 3 5 2 4 7777777777777777777777777777777777777 0 4 1 3 4 4 66 777 0
lowQualScore : . . ...... . ....... . ................................. ...... . . .... . . . . ......... . . . .. . .. . . . . . ..... .. ........ ..... . . . .... ... . . . .. . .... . . . . .. . .................... . . .... .... . ............................... . . . . . .. ........................ ........ . . . ........... . . . . ..................................... . . . . . . .. ... .
lowQualScore : 0 6 666666 4 8888888 3 777777777777777777777777777777777 555555 3 3 9999 6 3 1 0 222222222 5 1 5 00 6 00 6 6 9 5 6 33333 00 88888888 33333 3 1 1 5555 888 6 2 9 00 3 7777 4 7 1 6 44 4 44444444444444444444 8 4 4444 4444 4 5555555555555555555555555555555 6 8 0 8 3 22 111111111111111111111111 77777777 7 3 0 77777777777 0 7 3 0 6666666666666666666666666666666666666 3 3 8 4 4 4 11 888 9
consensus : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATA-------AA-T------TA-------TG---AAC-G-----A--TG------TAAATCGTGAA-ATTTCA--CAGTCAGATAGATT-TATTTGTTGCGCATCCGA-----TGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTAT----ACACTG-CAGTCAAATATAGTT--GG----AA-----AAG-AGCTGC-TAA----ATGCGCTCANATACGGAGCTGTA-TGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATC---GCA---T-NTN--TT-TATATGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGGTCAC--T------TTCGAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAG----TGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAA---TATAACAATACTTATTGAACGCCCCTCGC
Reference ( family-4083 ) : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATA-------AA-T------C--------TG---AA--------A--TG------TNAATCGTGAA-ATTTCA--CAGTCAGATAGATT-TATTTGTTGTGCATCCGA-----TGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTAN----ACACTG-CAGTCAAATATAGTT--GG----AA-----AAG-AGCTGC-TAA----ATGCGCTCANATACGGAGCTGTA-TGNA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATC---GCA---T-TTA--TT-TATATGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGGT-----T------TTCGAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAG----TGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTNGGAAATTGTT-A------GNAANATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGATATTATTTGTTG-T-TTTTATT--TTATTACCAA---TATAACATTACTTATTGAACGCCCCTCGC
gi|1 : -GTTCAATAAGAAA------TGTAATTCATCTCACA-------AA-T------TA-------TG---AATCGTAAACA--TG------CAAATCGTAAA-GTTTGA--CAGTCAGATATATT-TATTTGTTG----------------ATACCAATAAACAAATCGTACGAGTTTC--AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTAT----ACGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAAT-AACTGC-TAA----ATGTGTTCATATACGAGACTGTA-TGAG----TGTCCATTGCACAAGTGA------GTGAATC---GCAGATT-TTAATTTGTACATGTATATGGCA-ATAA---TAA----GTACATT-A---C-ATA-TTAGTTCACTTT------TTTGAGCCCCATAGAAAGAATAACAGTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAG----TGTGGTATTTCAGTGTCTGATGGCTATACACAC--------AGCAGACTATTAAGACAAACTTGAGAAAGTGTT-A------GAAAGATTG--AAAAGTGTATTT-CTGTTA---A---AGATA---------------T--GAACCAAATATTATCAAGATATTCTTTGTTA-TATTTTATT--TTATTACCAA---TATAACAAAACTTATTGAACTCCCTTCGC
gi|10 : gaaGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATT-------AA-T------TA-------TG---AACAGTTAATA--TG------TAAATCGTAAA-ATTTCA--TAG
gi|10 : gagATAGCGGCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAG----TTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAATACATATTTCGGAAGTTATTAA------AAAAGATTA-AAAAGGTGCATTTAT-GTCA---AAAGAAATA-AATATGAAC--GAAT--GAACCAAATATTATCAAAA-A--AGTTGTTG-T-TTTTATT--TTATTAACAA---TATAACAACACTTATTGATCGCCCCTTGcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcGAGGAGC-ATTCAATAAGTAA------TGTTTTTCACCACATA-------AA-T------TA-------TG---AACCGTAAACA--TG------TAAATCATGAA-ATTTCC--CAGTCGGATAGAAT-TATTTGTTTTGCATCTGA-----TGATACCAGCAAACAAATTGTGCGAGTTCT--AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATAT----ACACTG-TAGTGAAGTATAGTT--GG----AG-----AAC-ATCTGC-TAAATTTATGTGCTCAGATACAGAGTTGCA-TGAA----TGCGTGTTGCATAt
gi|12 : CAATAA-TAA-------GTTATTCGTCCCATG-------AA-T---------------------------------TA------TCAACCGTGAATAT-------------ATAAATTGTAATTGTTTAG--TCAGAAATATTGATACCAACAAACAAATATTGAAATTTTC--AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-----ACACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAA-AGCTTC-TAA----ATGTGCTCGTATcatcaca
gi|13 : acaatgagcgtttattaagttaaatataaataTCAGTGTCCGATAGATATACACAA--------AACGGACTACGAGGACATATAACGGAAGTGGTT-A------AAAAGACTG-AAAA--TG----------------GGGAGATT-ACTTTGAAG--G--TTTGGACTTAATATTATCAAGAAAGTGTTTGTTG-T-TTTTATT--TGATTACCAA---TATAACATTACTTATTGAACGTCCTTCGgtataagtttaaatcccacatgt
gi|14 : CTAAATATTATCAAGACAGTATTTGTTG-T-TTTCATTACTTA--GCCAA---TATAACATTACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGTTGTTG-T-TTTCATT--CTATTACCAA---TATGACATTACTTATTAAGCGTACCTCa
gi|16 : GG-GC-GTTCAATTAGTAA------TGTTATTCGTCCCATA-------AA-
gi|2 : ttacgacGAGG-GC-GATCAATAAGTAA------AGTTATTCGACTCA-A-------AA-T------C--------TG----------------TG------TTAAACGTGAA-ATTTCA--CAGTCAGATAGATT-TTTTTGTTGTGTATCCGA-----TGATACCAAGGTATAAATCGTGCGAGTTTC--AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTAA----TCACTG-CAGTCAAATATAGTT--GG----AA-----AAG-AGCAGC-TAA----ATATGTTCACATGCGGAACTGTA-TGCA----TAGGCTTTGCACAAGTGGAGCA-TGTGCATA---GCA---T-TTA--TT-TATATGTATATGGTA-ATAG---CAA----G-AAA---A---A-AC--T----T-----T------TTCGA-CCCCAAACAAAGAATGGCATTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAG----TGTGGT-TTTTAATGTCTAACGGGTATACACAA--------AACAGACTATAAATACATATTTAAGACGCTG-T-A------GTAATATTG-AAAAAGTGCATTG-CAGTTA---AAGGAGATA-ACTTTGAAG--GAAT--GTACCAAATATTATCAAAATATAATTTGTAG-T-TTTTATT--TTGTTACCAA---TATAACAATACTTATTGAATGCCCCTCGCctagt
gi|3 : -GC-GTTCAAAAAGTAT------TGTTATTCGTCCCATA-------AA-T------TA-------TG---AA--------AAGTGAACATTTTAATCGTGAA-ATTTCA--CAGTCAAACATATT-TATTTGTTGCGCATACGA-----TGATACCAACATACAAATCGTTCGAGTTCG--AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTAT----ATACTG-CAGTCAAATATTGTT--GG----AA-----AAT-AGCTGC-TAG----ATGCGTT---ATACAGAGCTGTA--GCA-------------CACAAGTGGGGTA-CGTGCTTCTCAGAA---T-T----TT-TATGTGTTTATGATATATAG---CAA----G-AAA---ATTGA-ACAGTTNNNN-----N------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNATTGTGGTATTTCAGTGTATGTTGGGTATATACAA--------AACCAACTATGAAGACATATCTCGGAAGTTAT---------------TTA-AAAAGGT-TATTT-T-G------AAGGAG--------TGAA-------------CAAATTTTATCAAGATATTCGGCGTTG-T-TTTTATT--GTGTTAGCAA---TACAAAAATACTTATTGAACGTCCCTCG
gi|4 : GG-AC-ATTTAAAAAGTAA------TGTTGTTCTTCCCTTA-------AA-T------TGTGAGCCATG---AAT-------A--TG------TAAATTGTGAA-ATTTC---------GGTAGATT-TATCTGTTGTGCATCTGA-----TGATACCAACAAACAATGTGTGCAGTTTTC--AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGTTATATTGAAAAAATG-TTCTCAAATATAG------------------AG-A--TGTATCA----ATGC------ATATTGTGCAACAGGGTA----TGTGCAT--CACA----GA-TA-T-TTTAT------A---T-CTA-----TATAT---TGTG----ATAG---AAA----G-AAATTTG---A-ACA-TTAGTTCACAAT------TTCAAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAG--GAA----------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAA--------AACAGAC---GAGGACATAATCTGGAAATGGTA-AAAGACTGAACAACTG-AACAAGTGCATTT-CTGTTAATTAAAGGGACATACATT------G--T--AAACCAAAAAGTGTGA--ACATT-TTTGTTG-T-TTGCATT--TTATTACCAATATTATAACA--ACTTACTGAACATCCCT
gi|5 : agAATCGTGAT-ATATCA--CAGTCAGAGAGATT-TATTTGTTGCGTATCCGA-----TTATACCAA--AACAAATAGTGCAATTTCC--AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTAT----ACACCG-TAACTAAATATAGTT--GA----AA-----AAG-AGCTGC-TAA----ACGtaa
gi|5 : aATC---GCA---A-ATT--TT-CATATGGATATGGTA-AAAG---CAA----G-AAA---ATTTA-ACA-TTAGGTCACTAT------TCCGAGCTCCATAGATAGAATGGCAACAGAAAATAACCACCAAA-ACAGACGAAG---------------------------CGTGGTATTTCAGTGTGTGATGGGTGTACACAA--------AACAGACTTAGACGATAAATTTAGG-AATTGTT-A------AAAAAAATGAAAAAAGTGTATTT-C-TTTC---AAGGATATT-ACTTTGAAGATA--T--GAACCAACTATTATCAAGATATTATTTGTTGCT-TTTTATT--TTATTACAAA---TATAACAATACATTTTGAACGCCCCTCaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|6 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaGAGGAGC-ATTCAATAAGTAA------TGGTATTCGTAACATA-------AAGT------A--------TG---AACAGCGAACA--TG------TCAATTGTGAA-ATTTCG--CAGTCAGATTGATT-TATTAATTAAGCATCCTA-----TGATATCAGCAAATAAATTGTGTGATTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTAC----ACACTG-TAGTCAAATGTGGTT---A----AA-----AAG-ACATGT-TAA----ATCTACTCAAATTCAAA----TA-TGGA----TG
gi|6 : cTCAAATATGGAT--GA----AA-----AAG-TCACAT-TAA----AT-CACTCAAATACTGAGCTACA-CGAT----TGCACGATGCACAAGTCGAGTA-AGTGCATC---ACAAA-T-TTT--CA-TATATGTATATAGTA-ATAGAAATAA----G-ATG---A---A-ACA-TT-GGT-----TCAACATTTCGAGCCTAAAAGAAAGAATGGAAGCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAaaaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|7 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatGG-GC-GTTTAACAAGTAAATCAAATGTTATTCGTTTCATA-------AA-TTATGAAC--------CGCGAAA--------A--TG------TAAACCGTTCA-ATTACA--CGGTCCGATAGATT-TATT--------AT---A-----TGATACCAGCACACATATCGTGCGATTTCC--AGTAT-AT-T-TGTT-ATCGTAGTCTCTGA-CATATACAGTTGTAT----ACAATGAAAAAAAAATAAAGTT--GG----AA-----AAATAGCTAC--AA-----------CA------------------A----TGCGCGTTAAACACGTGGATTATCGT-CATC---ATA---GAATA--TCATATATGTGTA--GTA-ATAG----AACTATG-AAA---A---GTGC--TTAAGTA----T------TTCAAGTCCCAAACAAAGATCGCCAGTTAAA
gi|8 : gAGG-GCAGTTCAATAAGTAA------TATTATTTGTCCCATATATTATGAA-C------CA-------TG---AAC-------A--TG------TAAATCGGGAA-ATTTCA----GTCAGATAGATT-TATTTGTTATACATCCGA-----CGATACCGACAA-------------TTTTC--AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCAGAT----ACACTG-CAGTCAAGTATATCT--GGA---AA-----AAG-AGCTGC-CAA----GTGTGCTTAAATACGCAGATATA-TGAA----TGCATGTTGCATTATTAGACTA-AGTACA-----GT-----------TT-TATATGTATACAGTA-ATAG---AAA----G---A---A---A-ACA-TTAG--------------TTC-------------ACAATT---TCAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAgagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|9 : GG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCA---------------------------------------------------------ATCGTGAA-ATTTTAATTAGTTAGGT---TT-TATT-GTTGTGCAT-----------------------------TGCAATTTCC--AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTAG----ACACTG-AAGTCATATCAAATTTCTA----AA-----AAG-AACTGC-TAT----A-G---TCAGA-ATGAAGCC-TA-GGAAAAGTTGCACGTGGCA
gi|9 : gag-TAA----ATGCGTTCACATATGGAGCTATA-TAAG----TGCACGTTGCACAAATGGAATA-CGCGCATC---GCA---G-ATT--TT-CATATGTATATGG----TAG---CAA----G-AAA---A---tcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
Alignments
lowQualScore : 8888888888888888888 1 1111 222222222222222 1111 222222222 111 2222 22222222222 22222222 1111111111 3333333333333333333333333333333333333
lowQualScore : 8 3 999999 0 8888888888888888888 999999 5555 1 6 8 999 0 0 3 55 3 44 3 3 0 0 3 2 3 44 44 0000 88888 444 6666 66 3 0 0 1 7777 5 1 22 88 777 222222222222222 66 4 2222 9999 4 333333333 000 0 7 0 4444 66 66 0 2 0 22 00000000000 1 1 2 00000000 1 0 3 1 8888888888 1 5 2 4 7777777777777777777777777777777777777 0 5 1 3 4 4 66 4
lowQualScore : . . ...... . ................... ...... .... . . . ... . . . .. . .. . . . . . . . .. .. .... ..... ... .... .. . . . . .... . . .. .. ... ............... .. . .... .... . ......... ... . . . .... .. .. . . . .. ........... . . . ........ . . . . .......... . . . . ..................................... . . . . . . .. .
lowQualScore : 0 6 666666 4 9999999999999999999 666666 3333 4 7 6 333 5 1 5 00 6 00 6 6 9 5 6 0 5 88 66 4444 33333 111 5555 44 3 4 4 4 7777 5 4 22 44 888 222222222222222 11 4 4444 4444 4 000000000 111 2 0 8 5555 99 99 8 8 8 22 22222222222 6 6 5 77777777 7 3 0 7 7777777777 7 7 3 0 6666666666666666666666666666666666666 3 4 8 4 4 4 11 4
consensus : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAA-CC-----G------A---TGTA------AATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATC---GCAG-ATTTT------T-ATATGTATATG--GTA-ATAG---CAA----G-AAA---A---A-ACA--TTAGTTCA-CA-T--TTC--GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
Reference ( family-4083 ) : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAA-C------G------A---TGTA------AATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGCGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATC---GCAT-NTNTT------T-ATATGTATATG--GTA-ATAG---CAA----G-AAA---A---A-ACA--TTAGGTCA-C--T--TTC--GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
gi|1 : -GTTCAATAAGAAA------TGTAATTCATCTCACAAATTATGAATC------GTAAAC-A---TGCA------AATCGTAAAGTTTGA--CAGTCAGATATATTTATTTGTTG-----------ATACCAATAAACAAATCGTACGAGTTTC--AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTATACGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAATAACTGCTAA----ATGTGTTCATATACGAGACTGTATGAG----TGTCCATTGCACAAGTGA------GTGAATC---GCAG-ATTTTAATTTGT-ACATGTATATG--GCA-ATAA---TAA----GTACATT-A---C-ATA--TTAGTTCA-C--T--TTTTTGAGCCCCATAGAAAGAATAACAGTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGCTATACACAC--------AGCAGACTATTAAGACAAACTTGAGAAAGTGTT-A------GAAAGATTG--AAAAGTGTATTT-CTGTTA---A---AGATA---------------T--GAACCAAATATTATCAAGATATTCTTTGTTA-TATTTTATT--TTATTACCAATATAACAAA-ACTTATTGAACTCCCTTCGC
gi|10 : gaaGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATTAATTATGAA-C------AGTTAATA---TGTA------AATCGTAAAATTTCA--TAG
gi|10 : gagATAGCGGCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAGTTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAATACATATTTCGGAAGTTATTAA------AAAAGATTA-AAAAGGTGCATTTAT-GTCA---AAAGAAATA-AATATGAAC--GAAT--GAACCAAATATTATCAAAA-A--AGTTGTTG-T-TTTTATT--TTATTAACAATATAACAAC-ACTTATTGATCGCCCCTTGcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcGAGGAGC-ATTCAATAAGTAA------TGTTTTTCACCACATAAATTATGAA-CC-----GTAAAC-A---TGTA------AATCATGAAATTTCC--CAGTCGGATAGAATTATTTGTTTTGCATCTGATGATACCAGCAAACAAATTGTGCGAGTTCT--AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATATACACTG-TAGTGAAGTATAGTT--GG----AG-----AACATCTGCTAAATTTATGTGCTCAGATACAGAGTTGCATGAA----TGCGTGTTGCATAt
gi|12 : CAATAA-TAA-------GTTATTCGTCCCATGAATTATCAA-CCGT---G------AATATATA------AATTGT--AATTGTT--TAGTCAGAAA----TATT---------------GATACCAACAAACAAATATTGAAATTTTC--AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-ACACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAAAGCTTCTAA----ATGTGCTCGTATcatcaca
gi|13 : acaatgagcgtttattaagttaaatataaataTCAGTGTCCGATAGATATACACAA--------AACGGACTACGAGGACATATAACGGAAGTGGTT-A------AAAAGACTG-AAAA--TG----------------GGGAGATT-ACTTTGAAG--G--TTTGGACTTAATATTATCAAGAAAGTGTTTGTTG-T-TTTTATT--TGATTACCAATATAACATT-ACTTATTGAACGTCCTTCGgtataagtttaaatcccacatgt
gi|14 : CTAAATATTATCAAGACAGTATTTGTTG-T-TTTCATTACTTA--GCCAATATAACATT-ACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGTTGTTG-T-TTTCATT--CTATTACCAATATGACATT-ACTTATTAAGCGTACCTCa
gi|16 : GG-GC-GTTCAATTAGTAA------TGTTATTCGTCCCATAAACTA
gi|2 : ttacgacGAGG-GC-GATCAATAAGTAA------AGTTATTCGACTCA-AAATC-TG---------------------TGTT------AAACGTGAAATTTCA--CAGTCAGATAGATTTTTTTGTTGTGTATCCGATGATACCAAGGTATAAATCGTGCGAGTTTC--AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTAATCACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCAGCTAA----ATATGTTCACATGCGGAACTGTATGCA----TAGGCTTTGCACAAGTGGAGCA-TGTGCATA---GCAT-TTATT------T-ATATGTATATG--GTA-ATAG---CAA----G-AAA---A---A-AC---TT----------T--TTC--GA-CCCCAAACAAAGAATGGCATTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAGTGTGGT-TTTTAATGTCTAACGGGTATACACAA--------AACAGACTATAAATACATATTTAAGACGCTG-T-A------GTAATATTG-AAAAAGTGCATTG-CAGTTA---AAGGAGATA-ACTTTGAAG--GAAT--GTACCAAATATTATCAAAATATAATTTGTAG-T-TTTTATT--TTGTTACCAATATAACAAT-ACTTATTGAATGCCCCTCGCgt
gi|3 : -GC-GTTCAAAAAGTAT------TGTTATTCGTCCCATAAATTATGAA-A------A------G---TGAACATTTTAATCGTGAAATTTCA--CAGTCAAACATATTTATTTGTTGCGCATACGATGATACCAACATACAAATCGTTCGAGTTCG--AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTATATACTG-CAGTCAAATATTGTT--GG----AA-----AATAGCTGCTAG----ATGCGTT---ATACAGAGCTGTA---------GC-----ACACAAGTGGGGTA-CGTGCTTC---TCAGAATTTT------T-ATGTGTTTATG--ATATATAG---CAA----G-AAA---ATTGA-ACAGTTNNNNNNN-N--N--NNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATTGTGGTATTTCAGTGTATGTTGGGTATATACAA--------AACCAACTATGAAGACATATCTCGGAAGTTAT---------------TTA-AAAAGGT-TATTT-T-G------AAGGAG--------TGAA-------------CAAATTTTATCAAGATATTCGGCGTTG-T-TTTTATT--GTGTTAGCAATACAAAAAT-ACTTATTGAACGTCCCTCG
gi|4 : GG-AC-ATTTAAAAAGTAA------TGTTGTTCTTCCCTTAAATTGTGAG-CCAT---G------AATATGTA------AATTGTGAAATTTC---------GGTAGATTTATCTGTTGTGCATCTGATGATACCAACAAACAATGTGTGCAGTTTTC--AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGT--------------------TATA-TT--GA----AA-----AA--------------ATGTTCTCAAATATAGAGATGTATCAA----TGCATATTGTGCAA-CAGGGTA-TGTGCATC---ACAG-ATATT------TTATATCTATATATTGTG-ATAG---AAA----G-AAATTTG---A-ACA--TTAGTTCA-CAAT--TTC--AAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAG--GAA------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAA--------AACAGAC---GAGGACATAATCTGGAAATGGTA-AAAGACTGAACAACTG-AACAAGTGCATTT-CTGTTAATTAAAGGGACATACATT------G--T--AAACCAAAAAGTGTGA--ACATT-TTTGTTG-T-TTGCATT--TTATTACCAATATTATAACAACTTACTGAACATCCCT
gi|5 : agA------AATCGTGATATATCA--CAGTCAGAGAGATTTATTTGTTGCGTATCCGATTATACCAA--AACAAATAGTGCAATTTCC--AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTATACACCG-TAACTAAATATAGTT--GA----AA-----AAGAGCTGCTAA----ACGtaa
gi|5 : ATC---GCAA-ATTTT------C-ATATGGATATG--GTA-AAAG---CAA----G-AAA---ATTTA-ACA--TTAGGTCA-C--TATTCC--GAGCTCCATAGATAGAATGGCAACAGAAAATAACCACCAAA-ACAGACGAAG-----------------------CGTGGTATTTCAGTGTGTGATGGGTGTACACAA--------AACAGACTTAGACGATAAATTTAGGAA-TTGTT-A------AAAAAAATGAAAAAAGTGTATTT-C-TTTC---AAGGATATT-ACTTTGAAGATA--T--GAACCAACTATTATCAAGATATTATTTGTTGCT-TTTTATT--TTATTACAAATATAACAAT-ACATTTTGAACGCCCCTCaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|6 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaGAGGAGC-ATTCAATAAGTAA------TGGTATTCGTAACATAAAGTATGAA-C------AGCGAACA---TGTC------AATTGTGAAATTTCG--CAGTCAGATTGATTTATTAATTAAGCATCCTATGATATCAGCAAATAAATTGTGTGATTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTACACACTG-TAGTCAAATGTGGTT---A----AA-----AAGACATGTTAA----ATCTACTCAAATTCAAATATGGATGAA----
gi|6 : cTCAAATATGGAT--GA----AA-----AAGTCACATTAA----AT-CACTCAAATACTGAGCTACACGAT----TGCACGATGCACAAGTCGAGTA-AGTGCATC---ACAA-ATTTTCA----T-ATATGTATATA--GTA-ATAGAAATAA----G-ATG---A---A-ACA--TTGGTTCAACA-T--TTC--GAGCCTAAAAGAAAGAATGGAAGCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|7 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatGG-GC-GTTTAACAAGTAAATCAAATGTTATTCGTTTCATAAATTATGAA-CCGCGAAA------A---TGTA------AACCGTTCAATTACA--CGGTCCGATAGATTTATT--------AT---ATGATACCAGCACACATATCGTGCGATTTCC--AGTAT-AT-T-TGTT-ATCGTAGTCTCTGA-CATATACAGTTGTATACAATGAAAAAAAAATAAAGTT--GG----AA---------------AA----AT--------------AGCTACAACAA----TGCGCGTTAAACACGTGGATTATCGT-CATCATAGAAT-ATC----------ATATATGTGTA--GTA-ATAG----AACTATG-AAA---A---GTGC---TTAAGT-A----T--TTC--AAGTCCCAAACAAAGATCGCCAGTTAAA
gi|8 : gAGG-GCAGTTCAATAAGTAA------TATTATTTGTCCCATATATTATGAA-CCAT---G------AACATGTA------AATCGGGAAATTTCA----GTCAGATAGATTTATTTGTTATACATCCGACGATACCGACAA-------------TTTTC--AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCAGATACACTG-CAGTCAAGTATATCT--GGA---AA-----AAGAGCTGCCAA----GTGTGCTTAAATACGCAGATATATGAA----TGCATGTTGCATTATTAGACTA-AGTACA-----G------TTT------T-ATATGTATACA--GTA-ATAG---AAA----G---A---A---A-ACA--TTAGTTCA-CAAT--TT--------------------------CAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAgagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|9 : GG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCA-----------------------------------------ATCGTGAAATTTTAATTAGTTAGGT---TTTATT-GTTGTGCAT------------------------TGCAATTTCC--AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTAGACACTG-AAGTCATATCAAATTTCTA----AA-----AAGAACTGCTAT----A-G---TCAGA-ATGAAGCC-TAGGAAAAGTTGCACGTGGCA
gi|9 : gagTAA----ATGCGTTCACATATGGAGCTATATAAG----TGCACGTTGCACAAATGGAATA-CGCGCATC---GCAG-ATTTT------C-ATATGTATATG--G----TAG---CAA----G-AAA---A---tcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
Alignments
lowQualScore : 777777777 1 1111 111111 1111 222222222 11111 22222222222 22222222 1111111111 3333333333333333333333333333333333333
lowQualScore : 8 3 999999 0 55 666666666 5555 1 6 4 999 0 0 3 55 3 44 3 3 0 0 3 2 3 44 44 0000 88888 444 6666 66 3 0 0 1 7777 5 1 22 88 4 4 888888 66 4 2222 9999 4 333333333 55 0 1 66666 5 0 2 0 22 00000000000 1 1 2 00000000 1 0 3 1 8888888888 1 5 2 4 7777777777777777777777777777777777777 0 5 1 3 4 4 66 4
lowQualScore : . . ...... . .. ......... .... . . . ... . . . .. . .. . . . . . . . .. .. .... ..... ... .... .. . . . . .... . . .. .. . . ...... .. . .... .... . ......... .. . . ..... . . . . .. ........... . . . ........ . . . . .......... . . . . ..................................... . . . . . . .. .
lowQualScore : 0 6 666666 4 00 777777777 3333 4 7 9 333 5 1 5 00 6 00 6 6 9 5 6 0 5 88 66 4444 33333 111 5555 44 3 4 4 4 7777 5 4 22 44 4 4 999999 11 4 4444 4444 4 000000000 44 2 4 11111 0 8 8 8 22 22222222222 6 6 5 77777777 7 3 0 7 7777777777 7 7 3 0 6666666666666666666666666666666666666 3 4 8 4 4 4 11 4
consensus : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAAC--CGTGAACA---TGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATATGTATATG--GTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-A-TTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
Reference ( family-4083 ) : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAAC--CG-----A---TGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATATGTATATG--GTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-A-TTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
gi|1 : -GTTCAATAAGAAA------TGTAATTCATCTCACAAATTATGAAT--CGTAAACA---TGCAAATCGTAAAGTTTGA--CAGTCAGATATATTTATTTGTTG-----------ATACCAATAAACAAATCGTACGAGTTTC--AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTATACGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAATAACTGCTAA----ATGTGTTCATATACGAGACTGTATGAG----TGTCCATTGCACAAGTGA------GTGAATCGCAG-AT-TTTAATTTGTACATGTATATG--GCA-ATAA---TAA----GTACATT-A---C-ATA-TTAGTTCA-C-T-TTTTTGAGCCCCATAGAAAGAATAACAGTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGCTATACACAC--------AGCAGACTATTAAGACAAACTTGAGAAAGTGTT-A------GAAAGATTG--AAAAGTGTATTT-CTGTTA---A---AGATA---------------T--GAACCAAATATTATCAAGATATTCTTTGTTA-TATTTTATT--TTATTACCAATATAACAAA-ACTTATTGAACTCCCTTCGC
gi|10 : gaaGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATTAATTATGAAC--AGTTAATA---TGTAAATCGTAAAATTTCA--TAG
gi|10 : gagATAGCGGCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAGTTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAATACATATTTCGGAAGTTATTAA------AAAAGATTA-AAAAGGTGCATTTAT-GTCA---AAAGAAATA-AATATGAAC--GAAT--GAACCAAATATTATCAAAA-A--AGTTGTTG-T-TTTTATT--TTATTAACAATATAACAAC-ACTTATTGATCGCCCCTTGcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcGAGGAGC-ATTCAATAAGTAA------TGTTTTTCACCACATAAATTATGAAC--CGTAAACA---TGTAAATCATGAAATTTCC--CAGTCGGATAGAATTATTTGTTTTGCATCTGATGATACCAGCAAACAAATTGTGCGAGTTCT--AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATATACACTG-TAGTGAAGTATAGTT--GG----AG-----AACATCTGCTAAATTTATGTGCTCAGATACAGAGTTGCATGAA----TGCGTGTTGCATAt
gi|12 : CAATAA-TAA-------GTTATTCGTCCCATGAATTATCAAC--CGTGAATA---TATAAATTGT--AATTGTT--TAGTCAGAAA----TATT---------------GATACCAACAAACAAATATTGAAATTTTC--AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-ACACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAAAGCTTCTAA----ATGTGCTCGTATcatcaca
gi|13 : acaatgagcgtttattaagttaaatataaataTCAGTGTCCGATAGATATACACAA--------AACGGACTACGAGGACATATAACGGAAGTGGTT-A------AAAAGACTG-AAAA--TG----------------GGGAGATT-ACTTTGAAG--G--TTTGGACTTAATATTATCAAGAAAGTGTTTGTTG-T-TTTTATT--TGATTACCAATATAACATT-ACTTATTGAACGTCCTTCGgtataagtttaaatcccacatgt
gi|14 : CTAAATATTATCAAGACAGTATTTGTTG-T-TTTCATTACTTA--GCCAATATAACATT-ACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGTTGTTG-T-TTTCATT--CTATTACCAATATGACATT-ACTTATTAAGCGTACCTCa
gi|16 : GG-GC-GTTCAATTAGTAA------TGTTATTCGTCCCATAAACTA
gi|2 : ttacgacGAGG-GC-GATCAATAAGTAA------AGTTATTCGACTCA-AAAT------C--TG---------TGTTAAACGTGAAATTTCA--CAGTCAGATAGATTTTTTTGTTGTGTATCCGATGATACCAAGGTATAAATCGTGCGAGTTTC--AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTAATCACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCAGCTAA----ATATGTTCACATGCGGAACTGTATGCA----TAGGCTTTGCACAAGTGGAGCA-TGTGCATAGCAT-TT-ATT------TATATGTATATG--GTA-ATAG---CAA----G-AAA---A---A-AC--TT-----------TTTC-GA-CCCCAAACAAAGAATGGCATTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAGTGTGGT-TTTTAATGTCTAACGGGTATACACAA--------AACAGACTATAAATACATATTTAAGACGCTG-T-A------GTAATATTG-AAAAAGTGCATTG-CAGTTA---AAGGAGATA-ACTTTGAAG--GAAT--GTACCAAATATTATCAAAATATAATTTGTAG-T-TTTTATT--TTGTTACCAATATAACAAT-ACTTATTGAATGCCCCTCGCgt
gi|3 : -GC-GTTCAAAAAGTAT------TGTTATTCGTCCCATAAATTATGAAA--AGTGAACA---TTTTAATCGTGAAATTTCA--CAGTCAAACATATTTATTTGTTGCGCATACGATGATACCAACATACAAATCGTTCGAGTTCG--AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTATATACTG-CAGTCAAATATTGTT--GG----AA-----AATAGCTGCTAG----ATGCGTT---ATACAGAGCTGTA---------GC-----ACACAAGTGGGGTA-CGTGCTTCTCAGAAT-TTT------TATGTGTTTATG--ATATATAG---CAA----G-AAA---ATTGA-ACAGTTNNNNNN-N-N-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATTGTGGTATTTCAGTGTATGTTGGGTATATACAA--------AACCAACTATGAAGACATATCTCGGAAGTTAT---------------TTA-AAAAGGT-TATTT-T-G------AAGGAG--------TGAA-------------CAAATTTTATCAAGATATTCGGCGTTG-T-TTTTATT--GTGTTAGCAATACAAAAAT-ACTTATTGAACGTCCCTCG
gi|4 : GG-AC-ATTTAAAAAGTAA------TGTTGTTCTTCCCTTAAATTGTGAGC--CATGAATA---TGTAAATTGTGAAATTTC---------GGTAGATTTATCTGTTGTGCATCTGATGATACCAACAAACAATGTGTGCAGTTTTC--AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGT--------------------TATA-TT--GA----AA-----AA--------------ATGTTCTCAAATATAGAGATGTATCAA----TGCATATTGTGCAA-CAGGGTA-TGTGCATCACAG-ATATTT------TATATCTATATATTGTG-ATAG---AAA----G-AAATTTG---A-ACA-TTAGTTCA-C-AATTTC-AAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAG--GAA------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAA--------AACAGAC---GAGGACATAATCTGGAAATGGTA-AAAGACTGAACAACTG-AACAAGTGCATTT-CTGTTAATTAAAGGGACATACATT------G--T--AAACCAAAAAGTGTGA--ACATT-TTTGTTG-T-TTGCATT--TTATTACCAATATTATAACAACTTACTGAACATCCCT
gi|5 : agAAATCGTGATATATCA--CAGTCAGAGAGATTTATTTGTTGCGTATCCGATTATACCAA--AACAAATAGTGCAATTTCC--AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTATACACCG-TAACTAAATATAGTT--GA----AA-----AAGAGCTGCTAA----ACGtaa
gi|5 : ATCGCAA-AT-TTT------CATATGGATATG--GTA-AAAG---CAA----G-AAA---ATTTA-ACA-TTAGGTCA-CTA-TTCC-GAGCTCCATAGATAGAATGGCAACAGAAAATAACCACCAAA-ACAGACGAAG-----------------------CGTGGTATTTCAGTGTGTGATGGGTGTACACAA--------AACAGACTTAGACGATAAATTTAGGAA-TTGTT-A------AAAAAAATGAAAAAAGTGTATTT-C-TTTC---AAGGATATT-ACTTTGAAGATA--T--GAACCAACTATTATCAAGATATTATTTGTTGCT-TTTTATT--TTATTACAAATATAACAAT-ACATTTTGAACGCCCCTCaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|6 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaGAGGAGC-ATTCAATAAGTAA------TGGTATTCGTAACATAAAGTATGAACAGCG-----AACATGTCAATTGTGAAATTTCG--CAGTCAGATTGATTTATTAATTAAGCATCCTATGATATCAGCAAATAAATTGTGTGATTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTACACACTG-TAGTCAAATGTGGTT---A----AA-----AAGACATGTTAA----ATCTACTCAAATTCAAATATGGATGAA----
gi|6 : cTCAAATATGGAT--GA----AA-----AAGTCACATTAA----AT-CACTCAAATACTGAGCTACACGAT----TGCACGATGCACAAGTCGAGTA-AGTGCATCACAA-AT-TTTCA----TATATGTATATA--GTA-ATAGAAATAA----G-ATG---A---A-ACA-TTGGTTCAAC-A-TTTC-GAGCCTAAAAGAAAGAATGGAAGCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|7 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatGG-GC-GTTTAACAAGTAAATCAAATGTTATTCGTTTCATAAATTATGAAC--CGCGAAAA---TGTAAACCGTTCAATTACA--CGGTCCGATAGATTTATT--------AT---ATGATACCAGCACACATATCGTGCGATTTCC--AGTAT-AT-T-TGTT-ATCGTAGTCTCTGA-CATATACAGTTGTATACAATGAAAAAAAAATAAAGTT--GG----AA---------------AA----AT--------------AGCTACAACAA----TGCGCGTTAAACACGTGGATTATCGT-CATCATAG-AA-TAT------CATATATGTGTA--GTA-ATAG----AACTATG-AAA---A---GTGCT-TAAGT------A-TTTC-AAGTCCCAAACAAAGATCGCCAGTTAAA
gi|8 : gAGG-GCAGTTCAATAAGTAA------TATTATTTGTCCCATATATTATGAAC--CATGAACA---TGTAAATCGGGAAATTTCA----GTCAGATAGATTTATTTGTTATACATCCGACGATACCGACAA-------------TTTTC--AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCAGATACACTG-CAGTCAAGTATATCT--GGA---AA-----AAGAGCTGCCAA----GTGTGCTTAAATACGCAGATATATGAA----TGCATGTTGCATTATTAGACTA-AGTACA--G-------TTT------TATATGTATACA--GTA-ATAG---AAA----G---A---A---A-ACA-TTAGTTCA-CAA-TTT-------------------------CAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAgagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|9 : GG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCA------------------------------ATCGTGAAATTTTAATTAGTTAGGT---TTTATT-GTTGTGCAT------------------------TGCAATTTCC--AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTAGACACTG-AAGTCATATCAAATTTCTA----AA-----AAGAACTGCTAT----A-G---TCAGA-ATGAAGCC-TAGGAAAAGTTGCACGTGGCA
gi|9 : gagTAA----ATGCGTTCACATATGGAGCTATATAAG----TGCACGTTGCACAAATGGAATA-CGCGCATCGCAG-AT-TTT------CATATGTATATG--G----TAG---CAA----G-AAA---A---tcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
Alignments
lowQualScore : 1 1111 111111 1111 222222222 111 22222222222 22222222 1111111111 3333333333333333333333333333333333333
lowQualScore : 8 3 999999 0 0 1 0 5555 1 6 4 999 0 0 3 55 3 44 3 3 0 0 3 2 1 44 44 0000 88888 1 3 6666 66 3 0 0 1 7777 5 1 22 88 4 4 888888 66 4 2222 9999 4 333333333 55 0 1 777 5 0 2 0 22 00000000000 1 1 2 00000000 1 0 3 1 8888888888 1 5 2 4 7777777777777777777777777777777777777 0 5 1 3 4 4 66 4
lowQualScore : . . ...... . . . . .... . . . ... . . . .. . .. . . . . . . . .. .. .... ..... . . .... .. . . . . .... . . .. .. . . ...... .. . .... .... . ......... .. . . ... . . . . .. ........... . . . ........ . . . . .......... . . . . ..................................... . . . . . . .. .
lowQualScore : 0 6 666666 4 5 2 5 3333 4 7 9 333 5 1 5 00 6 00 6 6 9 5 6 0 4 88 66 4444 33333 8 1 5555 44 3 4 4 4 7777 5 4 22 44 4 4 999999 11 4 4444 4444 4 000000000 44 2 4 666 0 8 8 8 22 22222222222 6 6 5 77777777 7 3 0 7 7777777777 7 7 3 0 6666666666666666666666666666666666666 3 4 8 4 4 4 11 4
consensus : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-ATTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
Reference ( family-4083 ) : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-ATTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
gi|1 : -GTTCAATAAGAAA------TGTAATTCATCTCACAAATTATGAATCGTAAACATGCAAATCGTAAAGTTTGA--CAGTCAGATATATTTATTTGTTG-----------ATACCAATAAACAAATCGTACGAGTTTC--AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTATACGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAATAACTGCTAA----ATGTGTTCATATACGAGACTGTATGAG----TGTCCATTGCACAAGTGA------GTGAATCGCAG-AT-TTTAATTTGTACA--TGTATATGGCA-ATAA---TAA----GTACATT-A---C-ATA-TTAGTTCA-C-TTTTTTGAGCCCCATAGAAAGAATAACAGTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGCTATACACAC--------AGCAGACTATTAAGACAAACTTGAGAAAGTGTT-A------GAAAGATTG--AAAAGTGTATTT-CTGTTA---A---AGATA---------------T--GAACCAAATATTATCAAGATATTCTTTGTTA-TATTTTATT--TTATTACCAATATAACAAA-ACTTATTGAACTCCCTTCGC
gi|10 : gaaGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATTAATTATGAACAGTTAATATGTAAATCGTAAAATTTCA--TAG
gi|10 : gagATAGCGGCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAGTTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAATACATATTTCGGAAGTTATTAA------AAAAGATTA-AAAAGGTGCATTTAT-GTCA---AAAGAAATA-AATATGAAC--GAAT--GAACCAAATATTATCAAAA-A--AGTTGTTG-T-TTTTATT--TTATTAACAATATAACAAC-ACTTATTGATCGCCCCTTGcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcGAGGAGC-ATTCAATAAGTAA------TGTTTTTCACCACATAAATTATGAACCGTAAACATGTAAATCATGAAATTTCC--CAGTCGGATAGAATTATTTGTTTTGCATCTGATGATACCAGCAAACAAATTGTGCGAGTTCT--AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATATACACTG-TAGTGAAGTATAGTT--GG----AG-----AACATCTGCTAAATTTATGTGCTCAGATACAGAGTTGCATGAA----TGCGTGTTGCATAt
gi|12 : CAATAA-TAA-------GTTATTCGTCCCATGAATTATCAACCGTGAATATATAAATTGT--AATTGTT--TAGTCAGAAA----TATT---------------GATACCAACAAACAAATATTGAAATTTTC--AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-ACACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAAAGCTTCTAA----ATGTGCTCGTATcatcaca
gi|13 : acaatgagcgtttattaagttaaatataaataTCAGTGTCCGATAGATATACACAA--------AACGGACTACGAGGACATATAACGGAAGTGGTT-A------AAAAGACTG-AAAA--TG----------------GGGAGATT-ACTTTGAAG--G--TTTGGACTTAATATTATCAAGAAAGTGTTTGTTG-T-TTTTATT--TGATTACCAATATAACATT-ACTTATTGAACGTCCTTCGgtataagtttaaatcccacatgt
gi|14 : CTAAATATTATCAAGACAGTATTTGTTG-T-TTTCATTACTTA--GCCAATATAACATT-ACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGTTGTTG-T-TTTCATT--CTATTACCAATATGACATT-ACTTATTAAGCGTACCTCa
gi|16 : GG-GC-GTTCAATTAGTAA------TGTTATTCGTCCCATAAACTA
gi|2 : ttacgacGAGG-GC-GATCAATAAGTAA------AGTTATTCGACTCA-AAAT------CTGTG----T-TAAA-CGTGAAATTTCA--CAGTCAGATAGATTTTTTTGTTGTGTATCCGATGATACCAAGGTATAAATCGTGCGAGTTTC--AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTAATCACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCAGCTAA----ATATGTTCACATGCGGAACTGTATGCA----TAGGCTTTGCACAAGTGGAGCA-TGTGCATAGCAT-TT-ATT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-AC--TT----------TTTC-GA-CCCCAAACAAAGAATGGCATTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAGTGTGGT-TTTTAATGTCTAACGGGTATACACAA--------AACAGACTATAAATACATATTTAAGACGCTG-T-A------GTAATATTG-AAAAAGTGCATTG-CAGTTA---AAGGAGATA-ACTTTGAAG--GAAT--GTACCAAATATTATCAAAATATAATTTGTAG-T-TTTTATT--TTGTTACCAATATAACAAT-ACTTATTGAATGCCCCTCGCgt
gi|3 : -GC-GTTCAAAAAGTAT------TGTTATTCGTCCCATAAATTATGAAAAGTGAACATTTTAATCGTGAAATTTCA--CAGTCAAACATATTTATTTGTTGCGCATACGATGATACCAACATACAAATCGTTCGAGTTCG--AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTATATACTG-CAGTCAAATATTGTT--GG----AA-----AATAGCTGCTAG----ATGCGTT---ATACAGAGCTGTA---------GC-----ACACAAGTGGGGTA-CGTGCTTCTCAGAAT-TTT------TATG--TGTTTATGATATATAG---CAA----G-AAA---ATTGA-ACAGTTNNNNNN-N-NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATTGTGGTATTTCAGTGTATGTTGGGTATATACAA--------AACCAACTATGAAGACATATCTCGGAAGTTAT---------------TTA-AAAAGGT-TATTT-T-G------AAGGAG--------TGAA-------------CAAATTTTATCAAGATATTCGGCGTTG-T-TTTTATT--GTGTTAGCAATACAAAAAT-ACTTATTGAACGTCCCTCG
gi|4 : GG-AC-ATTTAAAAAGTAA------TGTTGTTCTTCCCTTAAATTGTGAGCCATGAATATGTAAATTGTGAAATTTC---------GGTAGATTTATCTGTTGTGCATCTGATGATACCAACAAACAATGTGTGCAGTTTTC--AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGT--TATA-------------------TT--GA----AA---------------AA----ATGTTCTCAAATATAGAGATGTATCAA----TGCATATTGTGCAA-CAGGGTA-TGTGCATCACAG-ATATTT------TATATCTATATATTGTG-ATAG---AAA----G-AAATTTG---A-ACA-TTAGTTCA-CAATTTC-AAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAG--GAA------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAA--------AACAGAC---GAGGACATAATCTGGAAATGGTA-AAAGACTGAACAACTG-AACAAGTGCATTT-CTGTTAATTAAAGGGACATACATT------G--T--AAACCAAAAAGTGTGA--ACATT-TTTGTTG-T-TTGCATT--TTATTACCAATATTATAACAACTTACTGAACATCCCT
gi|5 : agAAATCGTGATATATCA--CAGTCAGAGAGATTTATTTGTTGCGTATCCGATTATACCAA--AACAAATAGTGCAATTTCC--AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTATACACCG-TAACTAAATATAGTT--GA----AA-----AAGAGCTGCTAA----ACGtaa
gi|5 : ATCGCAA-AT-TTT------CATA--TGGATATGGTA-AAAG---CAA----G-AAA---ATTTA-ACA-TTAGGTCA-CTATTCC-GAGCTCCATAGATAGAATGGCAACAGAAAATAACCACCAAA-ACAGACGAAG-----------------------CGTGGTATTTCAGTGTGTGATGGGTGTACACAA--------AACAGACTTAGACGATAAATTTAGGAA-TTGTT-A------AAAAAAATGAAAAAAGTGTATTT-C-TTTC---AAGGATATT-ACTTTGAAGATA--T--GAACCAACTATTATCAAGATATTATTTGTTGCT-TTTTATT--TTATTACAAATATAACAAT-ACATTTTGAACGCCCCTCaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|6 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaGAGGAGC-ATTCAATAAGTAA------TGGTATTCGTAACATAAAGTATGAACAGCGAACATGTCAATTGTGAAATTTCG--CAGTCAGATTGATTTATTAATTAAGCATCCTATGATATCAGCAAATAAATTGTGTGATTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTACACACTG-TAGTCAAATGTGGTT---A----AA-----AAGACATGTTAA----ATCTACTCAAATTCAAATATGGATGAA----
gi|6 : cTCAAATATGGAT--GA----AA-----AAGTCACATTAA----AT-CACTCAAATACTGAGCTACACGAT----TGCACGATGCACAAGTCGAGTA-AGTGCATCACAA-AT-TTTCA----TATA--TGTATATAGTA-ATAGAAATAA----G-ATG---A---A-ACA-TTGGTTCAAC-ATTTC-GAGCCTAAAAGAAAGAATGGAAGCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|7 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatGG-GC-GTTTAACAAGTAAATCAAATGTTATTCGTTTCATAAATTATGAACCGCGAAAATGTAAACCGTTCAATTACA--CGGTCCGATAGATTTATT--------AT---ATGATACCAGCACACATATCGTGCGATTTCC--AGTAT-AT-T-TGTT-ATCGTAGTCTCTGA-CATATACAGTTGTATACAATGAAAAAAAAATAAAGTT--GG----AA---------------AA----AT--------------AGCTACAACAA----TGCGCGTTAAACACGTGGATTATCGT-CATCATAG-AA-TAT------CATA--TATGTGTAGTA-ATAG----AACTATG-AAA---A---GTGCT-TAAGT------ATTTC-AAGTCCCAAACAAAGATCGCCAGTTAAA
gi|8 : gAGG-GCAGTTCAATAAGTAA------TATTATTTGTCCCATATATTATGAACCATGAACATGTAAATCGGGAAATTTCA----GTCAGATAGATTTATTTGTTATACATCCGACGATACCGACAA-------------TTTTC--AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCAGATACACTG-CAGTCAAGTATATCT--GGA---AA-----AAGAGCTGCCAA----GTGTGCTTAAATACGCAGATATATGAA----TGCATGTTGCATTATTAGACTA-AGTACA--G-------TTT------TATA--TGTATACAGTA-ATAG---AAA----G---A---A---A-ACA-TTAGTTCA-CAATTT-------------------------CAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAgagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|9 : GG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCA-------------------------ATCGTGAAATTTTAATTAGTTAGGT---TTTATT-GTTGTGCAT------------------------TGCAATTTCC--AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTAGACACTG-AAGTCATATCAAATTTCTA----AA-----AAGAACTGCTAT----A-G---TCAGA-ATGAAGCC-TAGGAAAAGTTGCACGTGGCA
gi|9 : gagTAA----ATGCGTTCACATATGGAGCTATATAAG----TGCACGTTGCACAAATGGAATA-CGCGCATCGCAG-AT-TTT------CATA--TGTATATGG----TAG---CAA----G-AAA---A---tcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
Alignments
lowQualScore : 1 1111 111111 1111 222222222 111 22222222222 22222222 1111111111 3333333333333333333333333333333333333
lowQualScore : 8 3 999999 0 0 1 0 5555 1 6 4 999 0 0 3 55 3 44 3 3 0 0 3 2 1 44 44 0000 88888 1 3 6666 66 3 0 0 1 7777 5 1 22 88 4 4 888888 66 4 2222 9999 4 333333333 55 0 1 777 5 0 2 0 22 00000000000 1 1 2 00000000 1 0 3 1 8888888888 1 5 2 4 7777777777777777777777777777777777777 0 5 1 3 4 4 66 4
lowQualScore : . . ...... . . . . .... . . . ... . . . .. . .. . . . . . . . .. .. .... ..... . . .... .. . . . . .... . . .. .. . . ...... .. . .... .... . ......... .. . . ... . . . . .. ........... . . . ........ . . . . .......... . . . . ..................................... . . . . . . .. .
lowQualScore : 0 6 666666 4 5 2 5 3333 4 7 9 333 5 1 5 00 6 00 6 6 9 5 6 0 4 88 66 4444 33333 8 1 5555 44 3 4 4 4 7777 5 4 22 44 4 4 999999 11 4 4444 4444 4 000000000 44 2 4 666 0 8 8 8 22 22222222222 6 6 5 77777777 7 3 0 7 7777777777 7 7 3 0 6666666666666666666666666666666666666 3 4 8 4 4 4 11 4
consensus : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-ATTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
Reference ( family-4083 ) : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-ATTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
gi|1 : -GTTCAATAAGAAA------TGTAATTCATCTCACAAATTATGAATCGTAAACATGCAAATCGTAAAGTTTGA--CAGTCAGATATATTTATTTGTTG-----------ATACCAATAAACAAATCGTACGAGTTTC--AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTATACGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAATAACTGCTAA----ATGTGTTCATATACGAGACTGTATGAG----TGTCCATTGCACAAGTGA------GTGAATCGCAG-AT-TTTAATTTGTACA--TGTATATGGCA-ATAA---TAA----GTACATT-A---C-ATA-TTAGTTCA-C-TTTTTTGAGCCCCATAGAAAGAATAACAGTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGCTATACACAC--------AGCAGACTATTAAGACAAACTTGAGAAAGTGTT-A------GAAAGATTG--AAAAGTGTATTT-CTGTTA---A---AGATA---------------T--GAACCAAATATTATCAAGATATTCTTTGTTA-TATTTTATT--TTATTACCAATATAACAAA-ACTTATTGAACTCCCTTCGC
gi|10 : gaaGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATTAATTATGAACAGTTAATATGTAAATCGTAAAATTTCA--TAG
gi|10 : gagATAGCGGCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAGTTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAATACATATTTCGGAAGTTATTAA------AAAAGATTA-AAAAGGTGCATTTAT-GTCA---AAAGAAATA-AATATGAAC--GAAT--GAACCAAATATTATCAAAA-A--AGTTGTTG-T-TTTTATT--TTATTAACAATATAACAAC-ACTTATTGATCGCCCCTTGcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcGAGGAGC-ATTCAATAAGTAA------TGTTTTTCACCACATAAATTATGAACCGTAAACATGTAAATCATGAAATTTCC--CAGTCGGATAGAATTATTTGTTTTGCATCTGATGATACCAGCAAACAAATTGTGCGAGTTCT--AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATATACACTG-TAGTGAAGTATAGTT--GG----AG-----AACATCTGCTAAATTTATGTGCTCAGATACAGAGTTGCATGAA----TGCGTGTTGCATAt
gi|12 : CAATAA-TAA-------GTTATTCGTCCCATGAATTATCAACCGTGAATATATAAATTGT--AATTGTT--TAGTCAGAAA----TATT---------------GATACCAACAAACAAATATTGAAATTTTC--AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-ACACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAAAGCTTCTAA----ATGTGCTCGTATcatcaca
gi|13 : acaatgagcgtttattaagttaaatataaataTCAGTGTCCGATAGATATACACAA--------AACGGACTACGAGGACATATAACGGAAGTGGTT-A------AAAAGACTG-AAAA--TG----------------GGGAGATT-ACTTTGAAG--G--TTTGGACTTAATATTATCAAGAAAGTGTTTGTTG-T-TTTTATT--TGATTACCAATATAACATT-ACTTATTGAACGTCCTTCGgtataagtttaaatcccacatgt
gi|14 : CTAAATATTATCAAGACAGTATTTGTTG-T-TTTCATTACTTA--GCCAATATAACATT-ACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGTTGTTG-T-TTTCATT--CTATTACCAATATGACATT-ACTTATTAAGCGTACCTCa
gi|16 : GG-GC-GTTCAATTAGTAA------TGTTATTCGTCCCATAAACTA
gi|2 : ttacgacGAGG-GC-GATCAATAAGTAA------AGTTATTCGACTCA-AAAT------CTGTG----T-TAAA-CGTGAAATTTCA--CAGTCAGATAGATTTTTTTGTTGTGTATCCGATGATACCAAGGTATAAATCGTGCGAGTTTC--AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTAATCACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCAGCTAA----ATATGTTCACATGCGGAACTGTATGCA----TAGGCTTTGCACAAGTGGAGCA-TGTGCATAGCAT-TT-ATT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-AC--TT----------TTTC-GA-CCCCAAACAAAGAATGGCATTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAGTGTGGT-TTTTAATGTCTAACGGGTATACACAA--------AACAGACTATAAATACATATTTAAGACGCTG-T-A------GTAATATTG-AAAAAGTGCATTG-CAGTTA---AAGGAGATA-ACTTTGAAG--GAAT--GTACCAAATATTATCAAAATATAATTTGTAG-T-TTTTATT--TTGTTACCAATATAACAAT-ACTTATTGAATGCCCCTCGCgt
gi|3 : -GC-GTTCAAAAAGTAT------TGTTATTCGTCCCATAAATTATGAAAAGTGAACATTTTAATCGTGAAATTTCA--CAGTCAAACATATTTATTTGTTGCGCATACGATGATACCAACATACAAATCGTTCGAGTTCG--AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTATATACTG-CAGTCAAATATTGTT--GG----AA-----AATAGCTGCTAG----ATGCGTT---ATACAGAGCTGTA---------GC-----ACACAAGTGGGGTA-CGTGCTTCTCAGAAT-TTT------TATG--TGTTTATGATATATAG---CAA----G-AAA---ATTGA-ACAGTTNNNNNN-N-NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATTGTGGTATTTCAGTGTATGTTGGGTATATACAA--------AACCAACTATGAAGACATATCTCGGAAGTTAT---------------TTA-AAAAGGT-TATTT-T-G------AAGGAG--------TGAA-------------CAAATTTTATCAAGATATTCGGCGTTG-T-TTTTATT--GTGTTAGCAATACAAAAAT-ACTTATTGAACGTCCCTCG
gi|4 : GG-AC-ATTTAAAAAGTAA------TGTTGTTCTTCCCTTAAATTGTGAGCCATGAATATGTAAATTGTGAAATTTC---------GGTAGATTTATCTGTTGTGCATCTGATGATACCAACAAACAATGTGTGCAGTTTTC--AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGT--TATA-------------------TT--GA----AA---------------AA----ATGTTCTCAAATATAGAGATGTATCAA----TGCATATTGTGCAA-CAGGGTA-TGTGCATCACAG-ATATTT------TATATCTATATATTGTG-ATAG---AAA----G-AAATTTG---A-ACA-TTAGTTCA-CAATTTC-AAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAG--GAA------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAA--------AACAGAC---GAGGACATAATCTGGAAATGGTA-AAAGACTGAACAACTG-AACAAGTGCATTT-CTGTTAATTAAAGGGACATACATT------G--T--AAACCAAAAAGTGTGA--ACATT-TTTGTTG-T-TTGCATT--TTATTACCAATATTATAACAACTTACTGAACATCCCT
gi|5 : agAAATCGTGATATATCA--CAGTCAGAGAGATTTATTTGTTGCGTATCCGATTATACCAA--AACAAATAGTGCAATTTCC--AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTATACACCG-TAACTAAATATAGTT--GA----AA-----AAGAGCTGCTAA----ACGtaa
gi|5 : ATCGCAA-AT-TTT------CATA--TGGATATGGTA-AAAG---CAA----G-AAA---ATTTA-ACA-TTAGGTCA-CTATTCC-GAGCTCCATAGATAGAATGGCAACAGAAAATAACCACCAAA-ACAGACGAAG-----------------------CGTGGTATTTCAGTGTGTGATGGGTGTACACAA--------AACAGACTTAGACGATAAATTTAGGAA-TTGTT-A------AAAAAAATGAAAAAAGTGTATTT-C-TTTC---AAGGATATT-ACTTTGAAGATA--T--GAACCAACTATTATCAAGATATTATTTGTTGCT-TTTTATT--TTATTACAAATATAACAAT-ACATTTTGAACGCCCCTCaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|6 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaGAGGAGC-ATTCAATAAGTAA------TGGTATTCGTAACATAAAGTATGAACAGCGAACATGTCAATTGTGAAATTTCG--CAGTCAGATTGATTTATTAATTAAGCATCCTATGATATCAGCAAATAAATTGTGTGATTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTACACACTG-TAGTCAAATGTGGTT---A----AA-----AAGACATGTTAA----ATCTACTCAAATTCAAATATGGATGAA----
gi|6 : cTCAAATATGGAT--GA----AA-----AAGTCACATTAA----AT-CACTCAAATACTGAGCTACACGAT----TGCACGATGCACAAGTCGAGTA-AGTGCATCACAA-AT-TTTCA----TATA--TGTATATAGTA-ATAGAAATAA----G-ATG---A---A-ACA-TTGGTTCAAC-ATTTC-GAGCCTAAAAGAAAGAATGGAAGCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|7 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatGG-GC-GTTTAACAAGTAAATCAAATGTTATTCGTTTCATAAATTATGAACCGCGAAAATGTAAACCGTTCAATTACA--CGGTCCGATAGATTTATT--------AT---ATGATACCAGCACACATATCGTGCGATTTCC--AGTAT-AT-T-TGTT-ATCGTAGTCTCTGA-CATATACAGTTGTATACAATGAAAAAAAAATAAAGTT--GG----AA---------------AA----AT--------------AGCTACAACAA----TGCGCGTTAAACACGTGGATTATCGT-CATCATAG-AA-TAT------CATA--TATGTGTAGTA-ATAG----AACTATG-AAA---A---GTGCT-TAAGT------ATTTC-AAGTCCCAAACAAAGATCGCCAGTTAAA
gi|8 : gAGG-GCAGTTCAATAAGTAA------TATTATTTGTCCCATATATTATGAACCATGAACATGTAAATCGGGAAATTTCA----GTCAGATAGATTTATTTGTTATACATCCGACGATACCGACAA-------------TTTTC--AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCAGATACACTG-CAGTCAAGTATATCT--GGA---AA-----AAGAGCTGCCAA----GTGTGCTTAAATACGCAGATATATGAA----TGCATGTTGCATTATTAGACTA-AGTACA--G-------TTT------TATA--TGTATACAGTA-ATAG---AAA----G---A---A---A-ACA-TTAGTTCA-CAATTT-------------------------CAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAgagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|9 : GG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCA-------------------------ATCGTGAAATTTTAATTAGTTAGGT---TTTATT-GTTGTGCAT------------------------TGCAATTTCC--AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTAGACACTG-AAGTCATATCAAATTTCTA----AA-----AAGAACTGCTAT----A-G---TCAGA-ATGAAGCC-TAGGAAAAGTTGCACGTGGCA
gi|9 : gagTAA----ATGCGTTCACATATGGAGCTATATAAG----TGCACGTTGCACAAATGGAATA-CGCGCATCGCAG-AT-TTT------CATA--TGTATATGG----TAG---CAA----G-AAA---A---tcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa
blockSeqs : A A ATCAAA T AATT G T T CTG T AG A CG G G C C C T AA TC GGAA . C T ATTT GT G T AAGT G G AG TC A A CA TC T AAAT CTAT . ATTGA AG N CA . A GT TTGCACGGCCA T A G AAAAAAAC A C G AAAAGACTG G A G C ATGTCAAAAGAAATAAATATGAACGAAT A G A C . AC A
blockSeqs : A . . C AT G T T CCG A . . T . . C . C A T . A . A G . GT T T . G G GG T . . . . . C . . TTTGA A T CT . N GT TTGCGTTGC C G G . T C G TAAA G . A C CAGTTAAAGGAGATAACTTTGAAGGAAT C G G . . . .
blockSeqs : . . . T CC T T C ACG C . . C . . . . C T C . . . G G . AT C T . A G GG C . . . . . C . . ATTTA A T AC . T NN TTGCATTGC N N T . T A G TAA T . G T CTTTCAAGGATATTACTTTGAAGATAT C T A . . . .
blockSeqs : . . . C TT G T T CTG C . . C . . . . C T C . . . T G . GC A T . A G AG T . . . . . A . . AGT A T CA . T GA NNNNNNNNN T G . . T C G TAG A . A C CTGTTAATTAAAGGGACATACATTGT T T A . . . .
blockSeqs : . . . T AC G T C CCG T . . T . . . . G T C . . . G G . GT A C . G T AT A . . . . . C . . AA T T N . A GT TTATATCGC C A . . T T A TAA A . A T GGGAGATTACTTTGAAGGTTT T T A . . . .
blockSeqs : . . . C AC G A A CCT A . . T . . . . A C T . . . G C . CT A A . A A AC A . . . . . A . . AA A . . . A . . . . . . A . . . . . . TGAAGGAGTGAA C T C . . . .
blockSeqs : . . . A AC G T T CCG T . . T . . . . T T T . . . G C . GT A T . A . AA C . . . . . C . . AA . . . . . . . . . T T A . . . .
blockSeqs : . . . C GC G . T . C . . C . . . . C T C . . . G G . GC G G . A . . . . . . . . . . . . . . .
blockSeqs : . . . . AC . . . . . . . C . . . . C G A . . . G A . C C T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . .
blockSeqs : .
blockSeqCons : CCG ***** AG N* ****** ATA****** CN* TTGCGTCGC** CTTAAAGGAGATNACTTTGAAGGTAT***********
originalCons : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAG---CAA----G-AAA---A---A-ACA-TTAGTTCA-C-ATTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTT-C-GTTA---AAGGAGATA-ACTTTGAAG--G--T--GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
finalCons : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTAN-GTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAG---CAA----G-AAAATA------ACA-TTAGTTCACN-ATTTC-GAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCGTCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATTTCTTAAAGGAGATNACTTTGAAGGTAT-----------GAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
Alignments
lowQualScore : 1 1111 111111 222 22222222222 22222222 111111111 55555555555555
lowQualScore : 8 3 999999 0 0 1 0 5555 1 6 4 999 0 0 3 55 3 44 3 3 0 0 3 2 1 44 44 0000 88888 1 3 6666 66 3 0 0 1 7777 5 1 1 66 4 4 888888 66 4 5 9999 0 666 0 66 2 1 55 0 2 0 22 55555555555 1 1 2 00000000 1 0 3 1 1 777777777 1 5 7 5 00000000000000 22 88 55 5 1 3 4 4 66 4
lowQualScore : . . ...... . . . . .... . . . ... . . . .. . .. . . . . . . . .. .. .... ..... . . .... .. . . . . .... . . . .. . . ...... .. . . .... . ... . .. . . .. . . . .. ........... . . . ........ . . . . . ......... . . . . .............. .. .. .. . . . . . .. .
lowQualScore : 0 6 666666 4 5 2 5 3333 4 7 9 333 5 1 5 00 6 00 6 6 9 5 6 0 4 88 66 4444 33333 8 1 5555 44 3 4 4 4 7777 5 4 4 00 4 4 999999 11 4 7 4444 8 222 4 99 2 4 22 8 8 8 22 88888888888 6 6 5 77777777 7 3 0 7 4 000000000 7 7 1 3 77777777777777 11 77 99 4 8 4 4 4 11 4
consensus : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-CGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAGCAA----GAAAAT--AACAT--TAGTTCACNATTTCGAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCATCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATT--TC------TTAAAGGAGAT-TACTTTGAAGGNATGAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
Reference ( family-4083 ) : GAGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATAAATTATGAACCGTGAACATGTAAATCGTGAAATTTCA--CAGTCAGATAGATTTATTTGTTGTGCATCCGATGATACCAACAAACAAATCGTGCGATTTCC--AGAAT-AC-T-T-TT-ATCGTAGTCT-TGACCACATACAGTCGTATACACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCTGCTAA----ATGCGCTCANATACGGAGCTGTATGAA----TGCGCGTTGCACAAGTGGAGTA-NGTGCATCGCAG-AT-TTT------TATA--TGTATATGGTA-ATAGCAA----GAAAAT--AACAT--TAGTTCACNATTTCGAGCCCCANAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAGACGAAGGTCTTGCGTCGC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGGTATACACAA--------AACAGACTATGAAGACATATTTCGGAAGTTGTT-A------GAAAGATTG-AAAAAGTGCATT--TC------TTAAAGGAGAT-NACTTTGAAGGTATGAACCAAATATTATCAAGACATTATTTGTTG-T-TTTTATT--TTATTACCAATATAACAAT-ACTTATTGAACGCCCCTCGC
gi|1 : -GTTCAATAAGAAA------TGTAATTCATCTCACAAATTATGAATCGTAAACATGCAAATCGTAAAGTTTGA--CAGTCAGATATATTTATTTGTTG-----------ATACCAATAAACAAATCGTACGAGTTTC--AGTAT-AC-T-T-TTTATCGAAGTCT-TGACCACATACAGTTGTATACGTTG-CAGTCAAATATAGTT--GG----AAGGAAAAATAACTGCTAA----ATGTGTTCATATACGAGACTGTATGAG----TGTCCATTGCACAAGTG------AGTGAATCGCAG-AT-TTTAATTTGTACA--TGTATATGGCA-ATAATAA----GTACAT--TACATATTAGTTCACTTTTTTGAGCCCCATAGAAAGAATAACAGTAAAATATGGCCAAAAAGGACAGACAAAGGTC----ATCAC--CAACAGAAGTGTGGTATTTCAGTGTCTGATGGCTATACACAC--------AGCAGACTATTAAGACAAACTTGAGAAAGTGTT-A------GAAAGATTG--AAAAGTGTATT--TC------T----G----------TTAAAGATATGAACCAAATATTATCAAGATATTCTTTGTTA-TATTTTATT--TTATTACCAATATAACAAA-ACTTATTGAACTCCCTTCGC
gi|10 : gaaGG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCATTAATTATGAACAGTTAATATGTAAATCGTAAAATTTCA--TAG
gi|10 : gagATAGCGGCAAAATATGGCTTTCATAGACAGACAAAGGTCTTGCGTTGC--CAATAAAAGTTTGGTATTTCAGTGTCTGATGGGTATACAAAAAAAAAAACAACAGACAATGAATACATATTTCGGAAGTTATTAA------AAAAGATTA-AAAAGGTGCATTTATG------TCAAAAGAAAT-AAATATGAACGAATGAACCAAATATTATCAAAA-A--AGTTGTTG-T-TTTTATT--TTATTAACAATATAACAAC-ACTTATTGATCGCCCCTTGcggcaaaatatggctttcatagacagacaaaggtcttgcgttgccaataaaagtttggtatttcagtgtctgatgggtatacaaaaaaaaaaacaacagacaatgaatacatatttcggaagttattaaaaaagattaaaaaggtgcatttatgtcaaaagaaataaatatgaacgaatgaaccaaatattatcaaaaaagttgttgtttttattttattaacaatataacaacacttattgatcgccccttgt
gi|11 : gaggggcgttcaataagtaatgttattcgtcccattaattatgaacagttaatatgtaaatcgtaaaatttcGAGGAGC-ATTCAATAAGTAA------TGTTTTTCACCACATAAATTATGAACCGTAAACATGTAAATCATGAAATTTCC--CAGTCGGATAGAATTATTTGTTTTGCATCTGATGATACCAGCAAACAAATTGTGCGAGTTCT--AGAATAAT-T-T-TT-ATTGTAGTCT-TGACCACTTACAGTCATATACACTG-TAGTGAAGTATAGTT--GG----AG-----AACATCTGCTAAATTTATGTGCTCAGATACAGAGTTGCATGAA----TGCGTGTTGCATAt
gi|12 : CAATAA-TAA-------GTTATTCGTCCCATGAATTATCAACCGTGAATATATAAATTGT--AATTGTT--TAGTCAGAAA----TATT---------------GATACCAACAAACAAATATTGAAATTTTC--AGAAT-AC-TGT-TT-ATCATAGTCT-TGACCACAAACAATCGTA-ACACTA-CAGTCAAATATAGTT--GGGGAAAA-----AAAAGCTTCTAA----ATGTGCTCGTATcatcaca
gi|13 : acaatgagcgtttattaagttaaatataaataTCAGTGTCCGATAGATATACACAA--------AACGGACTACGAGGACATATAACGGAAGTGGTT-A------AAAAGACTG-AAAA--TG------------------GGGAGAT-TACTTTGAAGGTTTGGACTTAATATTATCAAGAAAGTGTTTGTTG-T-TTTTATT--TGATTACCAATATAACATT-ACTTATTGAACGTCCTTCGgtataagtttaaatcccacatgt
gi|14 : CTAAATATTATCAAGACAGTATTTGTTG-T-TTTCATTACTTA--GCCAATATAACATT-ACTTATTGAATATCCCTCt
gi|15 : ATGTTATCAAGACATCAGTTGTTG-T-TTTCATT--CTATTACCAATATGACATT-ACTTATTAAGCGTACCTCa
gi|16 : GG-GC-GTTCAATTAGTAA------TGTTATTCGTCCCATAAACTA
gi|2 : ttacgacGAGG-GC-GATCAATAAGTAA------AGTTATTCGACTCA-AAAT------CTGTG----T-TAAA-CGTGAAATTTCA--CAGTCAGATAGATTTTTTTGTTGTGTATCCGATGATACCAAGGTATAAATCGTGCGAGTTTC--AGAAT-AC-T-T-TT-ACCTAAGTCT-TGATAACATACAGTCGTAATCACTG-CAGTCAAATATAGTT--GG----AA-----AAGAGCAGCTAA----ATATGTTCACATGCGGAACTGTATGCA----TAGGCTTTGCACAAGTGGAGCA-TGTGCATAGCAT-TT-ATT------TATA--TGTATATGGTA-ATAGCAA----GAAAA---AAC-T--T---------TTTCGA-CCCCAAACAAAGAATGGCATTAACATATGGCAACCAAAGATAGAAGAAGGTCTTGCATTGC--CAACAGAAGTGTGGT-TTTTAATGTCTAACGGGTATACACAA--------AACAGACTATAAATACATATTTAAGACGCTG-T-A------GTAATATTG-AAAAAGTGCATT--GCAG----TTAAAGGAGAT-AACTTTGAAGGAATGTACCAAATATTATCAAAATATAATTTGTAG-T-TTTTATT--TTGTTACCAATATAACAAT-ACTTATTGAATGCCCCTCGCgt
gi|3 : -GC-GTTCAAAAAGTAT------TGTTATTCGTCCCATAAATTATGAAAAGTGAACATTTTAATCGTGAAATTTCA--CAGTCAAACATATTTATTTGTTGCGCATACGATGATACCAACATACAAATCGTTCGAGTTCG--AGAGT-TCGT-T-TT-ATCGTAGCCT-TGGTAACATATAGTCGTATATACTG-CAGTCAAATATTGTT--GG----AA-----AATAGCTGCTAG----ATGCGTT---ATACAGAGCTGTA---------GC-----ACACAAGTGGGGTA-CGTGCTTCTCAGAAT-TTT------TATG--TGTTTATGATATATAGCAA----GAAAATTGAACAG--TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATTGTGGTATTTCAGTGTATGTTGGGTATATACAA--------AACCAACTATGAAGACATATCTCGGAAGTT----------------ATTT-AAAA-------------------------AGGT-TATTTTGAAGGAGTGAA-CAAATTTTATCAAGATATTCGGCGTTG-T-TTTTATT--GTGTTAGCAATACAAAAAT-ACTTATTGAACGTCCCTCG
gi|4 : GG-AC-ATTTAAAAAGTAA------TGTTGTTCTTCCCTTAAATTGTGAGCCATGAATATGTAAATTGTGAAATTTC---------GGTAGATTTATCTGTTGTGCATCTGATGATACCAACAAACAATGTGTGCAGTTTTC--AAAAG-AT-T-T-TTCATCGAAGTGT-TGACAACATACAGT--TATA-------------------TT--GA----AA---------------AA----ATGTTCTCAAATATAGAGATGTATCAA----TGCATATTGTGCAA-CAGGGTA-TGTGCATCACAG-ATATTT------TATATCTATATATTGTG-ATAGAAA----GAAATTTGAACAT--TAGTTCACAATTTCAAGCCCCATAGAAAGAATGGCAGCAAAATATGGCCACCAAAGACAG--GAA------------------------TGTGATATTTCAGTGTTTGAAGGATATACACAA--------AACAGAC---GAGGACATAATCTGGAAATGGTA-AAAGACTGAACAACTG-AACAAGTGCATT--TCTGTTAATTAAAGG-GACATACATTG------TAAACCAAAAAGTGTGA--ACATT-TTTGTTG-T-TTGCATT--TTATTACCAATATTATAACAACTTACTGAACATCCCT
gi|5 : agAAATCGTGATATATCA--CAGTCAGAGAGATTTATTTGTTGCGTATCCGATTATACCAA--AACAAATAGTGCAATTTCC--AGAAT-AT-T-T-TT-ATCGTAGTCT-TGACCGTATACAGTGGTATACACCG-TAACTAAATATAGTT--GA----AA-----AAGAGCTGCTAA----ACGtaa
gi|5 : ATCGCAA-AT-TTT------CATA--TGGATATGGTA-AAAGCAA----GAAAATTTAACAT--TAGGTCACTATTCCGAGCTCCATAGATAGAATGGCAACAGAAAATAACCACCAAA-ACAGACGAAG-----------------------CGTGGTATTTCAGTGTGTGATGGGTGTACACAA--------AACAGACTTAGACGATAAATTTAGGAA-TTGTT-A------AAAAAAATGAAAAAAGTGTATT--TCT-----TTCAAGGATAT-TACTTTGAAGATATGAACCAACTATTATCAAGATATTATTTGTTGCT-TTTTATT--TTATTACAAATATAACAAT-ACATTTTGAACGCCCCTCaatcgcaaattttcatatggatatggtaaaagcaagaaaatttaacattaggtcactattccgagctccatagatagaatggcaacagaaaataaccaccaaaacagacgaagcgtggtatttcagtgtgtgatgggtgtacacaaaacagacttagacgataaatttaggaattgttaaaaaaaatgaaaaaagtgtatttctttcaaggatattactttgaagatatgaaccaactattatcaagatattatttgttgctttttattttattacaaatataacaatacattttgaacgcccctc
gi|6 : aaatcgtgatatatcacagtcagagagatttatttgttgcgtatccgattataccaaaacaaatagtgcaatttccagaatatttttatcgtagtcttgaccgtatacagtggtatacaccgtaactaaatatagttgaaaaagagctgctaaacgaGAGGAGC-ATTCAATAAGTAA------TGGTATTCGTAACATAAAGTATGAACAGCGAACATGTCAATTGTGAAATTTCG--CAGTCAGATTGATTTATTAATTAAGCATCCTATGATATCAGCAAATAAATTGTGTGATTTCCAGAGAAT-A------TT-ATCGTAGTAT-TGACCACATACAGTAGTACACACTG-TAGTCAAATGTGGTT---A----AA-----AAGACATGTTAA----ATCTACTCAAATTCAAATATGGATGAA----
gi|6 : cTCAAATATGGAT--GA----AA-----AAGTCACATTAA----AT-CACTCAAATACTGAGCTACACGAT----TGCACGATGCACAAGTCGAGTA-AGTGCATCACAA-AT-TTTCA----TATA--TGTATATAGTA-ATAGAAA----TAAGATGAAACAT--TGGTTCAACATTTCGAGCCTAAAAGAAAGAATGGAAGCACAATATGACCACAATAGACAGACGAAGGACTTGCACGGCCACAATAGAaaagtcacattaaatcactcaaatactgagctacacgattgcacgatgcacaagtcgagtaagtgcatcacaaattttcatatatgtatatagtaatagaaataagatgaaacattggttcaacatttcgagcctaaaagaaagaatggaagcacaatatgaccacaatagacagacgaaggacttgcacggccacaataga
gi|7 : cgaggagcattcaataagtaatggtattcgtaacataaagtatgaacagcgaacatgtcaattgtgaaatttcgcagtcagattgatttattaattaagcatcctatgatatcagcaaataaattgtgtgatttccagagaatattatcgtagtattgaccacatacagtagtacacactgtagtcaaatgtggttaaaaagacatgttaaatctactcaaatGG-GC-GTTTAACAAGTAAATCAAATGTTATTCGTTTCATAAATTATGAACCGCGAAAATGTAAACCGTTCAATTACA--CGGTCCGATAGATTTATT--------AT---ATGATACCAGCACACATATCGTGCGATTTCC--AGTAT-AT-T-TGTT-ATCGTAGTCTCTGA-CATATACAGTTGTATACAATGAAAAAAAAATAAAGTT--GG----AA---------------AA----AT--------------AGCTACAACAA----TGCGCGTTAAACACGTGGATTATCGT-CATCATAG-AA-TAT------CATA--TATGTGTAGTA-ATAG-AACTATGAAAAG--TGCTT--AAGT-----ATTTCAAGTCCCAAACAAAGATCGCCAGTTAAA
gi|8 : gAGG-GCAGTTCAATAAGTAA------TATTATTTGTCCCATATATTATGAACCATGAACATGTAAATCGGGAAATTTCA----GTCAGATAGATTTATTTGTTATACATCCGACGATACCGACAA-------------TTTTC--AGAAG-AC-T-T-TTCATCGAAGTCT-TGACTACATACAGTCAGATACACTG-CAGTCAAGTATATCT--GGA---AA-----AAGAGCTGCCAA----GTGTGCTTAAATACGCAGATATATGAA----TGCATGTTGCATTATTAGACTA-AGTACA--G-------TTT------TATA--TGTATACAGTA-ATAGAAA----GAA-----AACAT--TAGTTCACAATTT------------------------CAAAATTCGGCCATCAAAGGCAGACGAAGGTCTTATATCGC--CAACAAAgagatatttttaacaaaggttcaggtttcagttcttaaagg
gi|9 : GG-GC-GTTCAATAAGTAA------TGTTATTCGTCCCA-------------------------ATCGTGAAATTTTAATTAGTTAGGT---TTTATT-GTTGTGCAT------------------------TGCAATTTCC--AGAAG-AC-T-T-T--ATCGTAGTCT-TGATCACATAGAGTCGTAGACACTG-AAGTCATATCAAATTTCTA----AA-----AAGAACTGCTAT----A-G---TCAGA-ATGAAGCC-TAGGAAAAGTTGCACGTGGCA
gi|9 : gagTAA----ATGCGTTCACATATGGAGCTATATAAG----TGCACGTTGCACAAATGGAATA-CGCGCATCGCAG-AT-TTT------CATA--TGTATATGG----TAGCAA----GAAAAT--tcgtctgtacagaaacggttgccgtcatactcagttagttagatgcccaaggtaaatgcgttcacatatggagctatataagtgcacgttgcacaaatggaatacgcgcatcgcagattttcatatgtatatggtagcaagaaaattaaa