lowQualScore : 1111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111
lowQualScore : 11 1 4444444 0000000000000000000000000 11 1 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 2222 1 2222 222 333333333333
lowQualScore : 1 7 11 6 3 7 8888888 7 1 8888888888888888888888888 11 6 0 99 777 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 6 6 9999 5 8888 222 000000000000
lowQualScore : . . .. . . . ....... . . ......................... .. . . .. ... ............................................................................................................................................................................................................................................... . . . .... . .... ... ............
lowQualScore : 4 8 00 0 2 8 8888888 5 0 2222222222222222222222222 00 7 6 66 222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 0 0000 0 0000 000 000000000000
consensus : GCACCAGTCATTTGTTACCCC-GGCTCACCCCAGACTGGG-N-----CATAGCGGAGGACAGC--TAAAGG-GC--CTNAAGTGCCGGGCTCTTACCNCATC-AGCGTCCCCGCAGTGNCGCGGAN--GTGTG-----G----GAGT----NTTACTTCACGTTAAAAACA-TCTGGGAT--T--A------GTGGTGCTTTTTGCCGGGGAGTATC-GG-AT--CTTGNGCNGCGTT-T-----AC-C--------AAT-----GGC-GATG-GAAC--TG-A-AAGAAT--------AGAAAATGTCAACGGTCGGANTAATACANCAGCAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
Reference ( gi|6 ) : GCACCAGTCATTTGCTACCCT-GGCTC-CCCCAAGCTGGG-C-----CACAGCAGAGGACAGCTATAAAGGAGC--CTTAAGTGTGGGGCTCTTACCATATC-AGTGTCCCCTCAGTGCCATGGAA--GTCTA-----G----CAGT----TTTACTTCAAATTAAA-----------AT--T--A------GTGGTGCCTTTTACCAAAAGGTACC-GG-AT--CTTGAGCAGTGTT-T-----AC-C--------AAT-----GGC-AATG-GAATCTTGCA-AAAAATT--AATACAGAAAAAGCCAACGGCCGGAA-AATGCATCACCAA-AACATAGGTCCCCAGGAGTAAAA-----------GGCATTTACCAGCAGAGAATTGCTGCAGCGCAGAGCATTTAACAGGG---CACAGCATTAGAAAAGTCA
gi|5 : GCATCAGTCATTTGTTATTCT-GGCTC-TTCAAGGCTGGA-A-----CATAGCAAAGGACAAC----AGGG-----CTAAAGTAACAAGTTCTTATTACATT-AATGTCACTGTAGTGTAGCAGAA--GTGTG-----GGGGAGGGTGGGGGTTACTTCACATTAAAAATATTCTGGGAT--T--ATTCATTGTGGTGCCTTTTGCTGCAGAGTATC-AT-ACTGCCTGA-CAG-------------------------------GGC-AATG-GA----TGAA-AGGAA---------AGAAAA---TAACAG-CGGAATAATACAACAGC---AACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|1 : GCACCAGTCATTTTTTACACC-GAATC-TCCCAGACTGGG-A-----CATAGCATAGGACAGT------GGGG---CTGAAATCCCAGACTCTTACCTTATC-AGTGTCCTCACAGC-TCATGAAaagtatttgctacattcgggcctttttggtactgtagttacaaatgactggttggtgcattaaattgcaggtataagaatttacta
gi|15 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatGCACCAATCTTTTGATACCAC-AGTTCACCCCAGGCCAGGACAGGA-CATAGTGGAGGACAGC-----AGG-GC--C-AAAATGCTGGACTTTTACTACATC-AGCGCCTCgctggaggagtgcttgggagtaccaggatcatgcgctgtgttttatctacacatttcctgggcaatgaaaccacatgagaattggaagacagaaaatgtcaatagtaagacaatacatcaacagcaaca
gi|17 : tGCACCATTCATTTGTTACCCC-AACTCACCCTAGAATAGA-------CATAGCGGGG--------TAAAG--------TAA----GGGGCTTTTACCA-GTCAAGTGTCCga
gi|8 : tCACCAATCATTTGTTACCCCCAGCTC-CC----ATTGGG-CATCTATAAAACAGAGAATAGCGGTA------CTACTTAAGTATCGGGC-CTTACCGCATC-AACATCTCCGCAGTGCCAAGGACGTGTTTAAAATTG----CAGG----GTTA--------TAAG-----------GTTGT--A------ACGGTGTTTTTTGCCTGGGACTATC-GGAAT--ATTTACCCATGTTCT-----GC-CGGAGCGATAAA-----GGCTGGTGAGAATGTTG---AAAAAT--------AGAATATGTCAACGG
gi|10 : -----CATAGCAGAGGACA-CTACAGAAG-GT--CTCAAGTGT-----TTTTACCCCATC-AACATTCTCTCAATGGAGTGGAA--GTGTG-----G----GAGT----TTTACTTCACATTGAA-----------AA--T--A------GT
gi|14 : ggccagtaTGTCCTCGCAGTAACGTGAAT--GTGCA-----G----GAGT----TTTACTTCATGCCAAAAACAGTCTGGGAT--TACA------GTTGTGCTTCTTTCCAGGGAGTATA-GA-AT--CTTGTGCAGCATT-G-----AC-C--------TAT-----cggggattataatagtgcctcttgtggcatacatgtgatcctaccaccggtagg
gi|1 : atGTACCAGG-AT--CATGCGCTGTGTT-TTATCTACAC--------ATTTCCTGGGC-AATG-AAACC--ACATGAGAATTGGAAGACAGAAAATGTCAATAGTAAGAC-AATACATCAACAGCAACA
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AATTATAAGAAGTGTAAACAAACATTTTTCATCACTTAATCTATGGCGCAGTAATGAAATATTATCAATGCCATTTTCAGCACATTTTAGGTTACATATGGTGCATCCATTTTTTTTTTGGTGGAGGAAGAGCTCAGACTGAATCTGAAAAGAAGTCTTTACCGCAAATTTTCTCACATAAAATCTTTGGAGCGAGCGATATTTGAACCTACAACCTTTGAAGTGAGAGGTAAGTGATTATATGTTGCCAAAGACCACTTGGTCACAAATTTTAATGAAATATTTGTGAAATTAACCTTGTATAAAATCACTGCCCTTCAAATGATGGTTACACTCCAATGTAAAAGATATCAAACTGATGTGAAGTAACTGCTGTAACTGACATTGTTTCAAGATGCTGACGTAATACAAAGACTAGTGTCGACTTACATAATATATATAATGTTATCTATAGTATCTTGGAATACCTATATGTATGTTTATATTGTTCTTTATAGAAATGACCTGAA
Unaligned ( gi|3 ): AGTTATTTCCCTTAGACTATTTGCTGTTGACATTTGAAATCAAAGTATCCAGAGTACTGAAACCTGGACCATTTTACTTTTATTTATTTTTAATAGGGTTTAACGCCATTTTCAACTAATTTCAGGTTATATAGGTTATTTATGGCATATCCAGTATTAGTGGTAGAGTCAGACTGAGTAGAACCACCATCCATCCGCAAGTAACTGGAAACTTTCTCACATAAATTTTTTGGAGTGAGCAGGACTCGAACCTACAACCTTAGTGGTGAAAGTTAAGTGATCATGAGACATCGCCCTAGACCACTCGGCCACGGAGGACATTTATTTAAAGATTATATACCAAAATCATTTAAAATCATTTTACCACCAATAAAAACTTATATTTCTATTAAGATTAATAATTAGATACTGTAATAGATAGAATTAAAACATTCTAATTAAGTCATTGTGCTTAATGC
Unaligned ( gi|4 ): TCAATTTGAGTAGTCTCTTCTTGTTTTTTCAACACATTTCAGGTCATATATGGCACATACAGTTTTGTTGGTGGAGAAAACCTCAGAATGAATCCGAGTAGTCCTTTCGCAAGTAACTTTCTCACATAAAGCTTTTTGAGCGAGCGGGACTCTAACCTACGACCTAAGTGGTGAGAGTGATATTGCGACGACACATTAGACCACTCGGCCATGGAGGACCCTTCTAGTTTCTCTTAACATCAGTGGTGAAATTATCCAGACTTACATATTAAAATTGGGTATACATGTATGCATATATACTGAACAAAATAAGTAACTTCCGCTGTGTTTAAGTGCAGATATATATGTAAATACGAAAACAAGGGTAAAATTATTTTTATATGTATTGCAAGAGTATTTCAATGTGAATTTGTGTGGAAAATTTTATCGCTCTACGTTTACGGAAAACTGATGA
Unaligned ( gi|7 ): ATGTATTTTAATGGGGTTTAACGCCAATTTCAAACATAACTGTAATACCAAGAAATGAATCTCAATAGATCCAGCGTCCTTCTGCAAGTAGCCTCCCAATTTTCTCATAAAATGTTTTTGGGGTTCATCGGAGCGGGGATGTAACCAACAATTTAAGCAGTTGGAAGTAAGTGGTCATTTGTCAACACCACCTTGGACATCTTTGCCACTCATGACCACTCAGAGTTTTTGTGGTTTAAATGTTAAACAATGACTTATTAAATGTATTTCTCTGGACAAAAACAATAAAATGTTGGAAACTTCAGGGTCACTTGACTAGAAAAAAAACAATTTAATTAAG
Unaligned ( gi|9 ): CAAATAAAAGGGTCATGTAACGAATGATTCCTCAAGGTTTAAATTGTTTATGCACGGGTCATTGTTACCACAGCTCTGCCGACCCCCTTGACAGGAACAAAGTGGGCAACAGCTGTGCTAAAATCCAGACTCTTACCGCAACAATGTATCCGAAGTACCTTGAGCTGCAG
Unaligned ( gi|11 ): CTCTGCGGGACTGGGTCTTACAGTCCTTGTCTGTATAGAGAAAAATCAAAGTCTCGTATATGTCCTGGTCTTGTTGGTGCAGGGAAAACAACTGATTGGTGCATTATACAAGTATGAATATATATCTAA
Unaligned ( gi|12 ): GCTGGAGAGTAGTAGAATCTTGTTTGATGGTTTACTCATACTCTATACCAATGCAATTAAATCTTACAAGAATTGAAAGACTAAAAATCAATAACAGGATAATTAACTAAGTATCCAACAA
Unaligned ( gi|13 ): ATGTAACTAGCATTTCTCTCATGAAATTTTAATACCTAGCTTTGCTAGGCTCGAACCTACATGTATGATCTCAATAATAAGTAGTTACCAAAACATCCTAGACCAGTTAGCAACAGAGGAC
Unaligned ( gi|16 ): TTTCAGCATATTACAGGTCAAACATACATAGGCCAATACAGTTTAAGACCTATACTGAATCTGAGTAGAACTTTCGCAGGTTAATATCCT
Unaligned ( gi|18 ): TCAACATTCCCCCAATGTGTTGTGGAAGTGTGGGAGTTTATTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 111111111111 111111 55555555555555555555 111 1111 3333333333 111 11 6666666666666666666666666 1111 000000000000000000000000000000000000000000000000000000000000000000000 1 22 1111 2 44444444444 222 22
lowQualScore : 66 1 888888 66 444444444444 1 222222 0 1 55555555555555555555 333 11 4 0 66 0000 22 88 888 77 1 0000000000 111 11 4444444444444444444444444 6 4444 66 1 9 555555555555555555555555555555555555555555555555555555555555555555555 33 2 44 8888 6 0 44444444444 4 4 2 2 4 2 2 4 111 3 77
lowQualScore : .. . ...... .. ............ . ...... . . .................... ... .. . . .. .... .. .. ... .. . .......... ... .. ......................... . .... .. . . ..................................................................... .. . .. .... . . ........... . . . . . . . . ... . ..
lowQualScore : 11 4 000000 99 999999999999 0 888888 2 4 66666666666666666666 222 22 4 1 99 6666 44 44 999 99 7 6666666666 777 22 6666666666666666666666666 4 2222 00 0 6 333333333333333333333333333333333333333333333333333333333333333333333 22 3 77 7777 7 0 00000000000 0 0 5 5 0 5 5 0 555 0 55
consensus : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AG--G-GC----CTNAAGTGCCGGGCTCTTACCGCATC-AGCGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TT---ACTTCA-CGTTAAAAATAGT-CTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-ATCTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAAT-T-----------TG-AAAGAAT------AGAAAATGTCAACGGCCGGAA-AATACATCA-CAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
Reference ( family-35 ) : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GAC-----TGGGNCAT------AGCGGAGGACAGCTA--AAG--G-GC----CTNAAGTGCCGGGCTCTTACCNCATC-AGCGTCCCCGCA--G----TGNCGC-GGA--NGTG--TGGGAG----TN----TT---ACTTCA-CGTTAAAAACA-T-CTGGGAT--T--A------GTGGTGCTTTTTGCCGGGGAGTATC-GG-ATCTTGNGCNGCGTT-T-----AC-C--------AAT-----GGC-GATG-GAA--C-----------TG-AAAGAAT------AGAAAATGTCAACGGTCGGANTAATACANCAGCAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|1 : GCACCAGTCATTTTTTACACC-GAATC------TC--CCA--GAC-----TGGGACAT------AGCATAGGACAGT------G--G-GG----CTGAAATCCCAGACTCTTACCTTATC-AGTGTCCTCACA--GCTCATGAAGCTGGAGGAGTGCTTGGGAG----T
gi|1 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatTGCTTGGGAGTACCAGG-ATCATGCGCTGTGTT-TTATCTACAC--------ATTTCCTGGGC-AATG-AAA--CCACATGAGAATTG-GAAGA-C------AGAAAATGTCAATAGTAAGAC-AATACATCAACAGCAACAaccaggatcatgcgctgtgttttatctacacatttcctgggcaatgaaaccacatgagaattggaagacagaaaatgtcaatagtaagacaatacatcaacagcaaca
gi|10 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatgcaccagtcattttttacaccgaatctcccagactgggacatagcataggacagtggggctgaaatcccagactcttaccttatcagtgtcctcacagctcatgaagctggaggagCAT------AGCAGAGGACA-CTA--CAGAAG-GT----CTCAAGTGT-----TTTTACCCCATC-AACATTCTCTCA--A----TGGAGT-GGA--AGTG--TGGGAG----TT----TT---ACTTCA-CATTGAAAATAGT-CGGGGATTAT--A------ATAGTGCCTCTTG
gi|11 : ggccagtaGCACCAATCAGTTGTTTTCCC-TG--C-----ACCAACAA--GAC-----CAGGACAT------Atggcatacatgtgatcctaccaccggtagg
gi|14 : ctctgcgggactgggtcttacagtccttgtctgtatagagaaaaatcaaagtctcgtaGTCCTCGCA--G----TAACGT-GAA--TGTG--CAGGAG----TT----TT---ACTTCA-TGCCAAAAACAGT-CTGGGAT--TACA------GTTGTGCTTCTTTCCAGGGAGTATA-GA-ATCTTGTGCAGCATT-G-----AC-C--------TAT-----attatacaagtatgaatatatatctaa
gi|15 : attGCACCAATCTTTTGATACCAC-AGTTC-----ACC--CCA--GGCCAGGACAGGACAT------AGTGGAGGACAGC-----AG--G-GC----C-AAAATGCTGGACTTTTACTACATC-AGCG-CCTCG
gi|17 : tGCACCATTCATTTGTTACCCC-AACTC-----ACC--CTA--GAA-----T-AGACAT------AGCGGGG------TA--AAG------------TAAG----GGGCTTTTACCA-GTCAAGTGTCCa
gi|18 : tTC-AACATTCCCCCAATG----TGTTGT-GGA--AGTG--TGGGAG----T-----TT---ATTTC
gi|5 : GCATCAGTCATTTGTTATTCT-GGCTC------TT--CAA--GGC-----TGGAACAT------AGCAAAGGACAAC-----AG--G-GC-----TAAAGTAACAAGTTCTTATTACATT-AATGTCACTGTA--G----TGTAGC-AGA--AGTG--TGGGGGAGGGTGGGGGTT---ACTTCA-CATTAAAAATA-TTCTGGGAT--T--ATTCATTGTGGTGCCTTTTGCTGCAGAGTATC----ATACTGC-CTG-----------AC-----------AG-----GGC-AATG-GA---------------TG-AAAGGAA------AGAAAAT---AACAG-CGGAATAATACAA---CAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|6 : GCACCAGTCATTTGCTACCCT-GGCTC------CC--CCA--AGC-----TGGGCCAC------AGCAGAGGACAGCTATAAAG--GAGC----CTTAAGTGTGGGGCTCTTACCATATC-AGTGTCCCCTCA--G----TGCCAT-GGA--AGTC--TAGCAG----TT----TT---ACTTCA-AATTAAAA------------T--T--A------GTGGTGCCTTTTACCAAAAGGTACC-GG-ATCTTGAGCAGTGTT-T-----AC-C--------AAT-----GGC-AATG-GAATCT-----------TGCAAAAAATTAATACAGAAAAAGCCAACGGCCGGAA-AATGCATCACCAA-AACATAGGTCCCCAGGAGTAAAA-----------GGCATTTACCAGCAGAGAATTGCTGCAGCGCAGAGCATTTAACAGGG---CACAGCATTAGAAAAGTCAaagtatttgctacattcgggcctttttggtactgtagttacaaatgactggttggtgcattaaattgcaggtataagaatttacta
gi|8 : CACCAATCATTTGTTACCCCCAGCTC----------CCA----------TTGGGCATCTATAAAACAGAGAATAGC---------G-GTACTACTTAAGTATCGGGC-CTTACCGCATC-AACATCTCCGCA--G----TGCCAA-GGA--CGTG--T---------------TTAAAATTGCAGGGTTATAA---------GGTTG-T--A------ACGGTGTTTTTTGCCTGGGACTATC-GGAATATTTACCCATGTTCT-----GC-CGGAGCGATAAA-----GGCTGGTGAGAATGT-----------TG-AAA-AAT------AGAATATGTCAACGG
gi|9 : GCACGGGTCATT-GTTACCAC-AGCTCTGCCGACC--CCCTTGAC-----AGGAACAA------AGTGGGCAACAGCT-----G--T-GC-----TAAAAT-CCAGACTCTTACCGCAAC-AATGTATCCGAA--G----TACC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AATTATAAGAAGTGTAAACAAACATTTTTCATCACTTAATCTATGGCGCAGTAATGAAATATTATCAATGCCATTTTCAGCACATTTTAGGTTACATATGGTGCATCCATTTTTTTTTTGGTGGAGGAAGAGCTCAGACTGAATCTGAAAAGAAGTCTTTACCGCAAATTTTCTCACATAAAATCTTTGGAGCGAGCGATATTTGAACCTACAACCTTTGAAGTGAGAGGTAAGTGATTATATGTTGCCAAAGACCACTTGGTCACAAATTTTAATGAAATATTTGTGAAATTAACCTTGTATAAAATCACTGCCCTTCAAATGATGGTTACACTCCAATGTAAAAGATATCAAACTGATGTGAAGTAACTGCTGTAACTGACATTGTTTCAAGATGCTGACGTAATACAAAGACTAGTGTCGACTTACATAATATATATAATGTTATCTATAGTATCTTGGAATACCTATATGTATGTTTATATTGTTCTTTATAGAAATGACCTGAA
Unaligned ( gi|3 ): AGTTATTTCCCTTAGACTATTTGCTGTTGACATTTGAAATCAAAGTATCCAGAGTACTGAAACCTGGACCATTTTACTTTTATTTATTTTTAATAGGGTTTAACGCCATTTTCAACTAATTTCAGGTTATATAGGTTATTTATGGCATATCCAGTATTAGTGGTAGAGTCAGACTGAGTAGAACCACCATCCATCCGCAAGTAACTGGAAACTTTCTCACATAAATTTTTTGGAGTGAGCAGGACTCGAACCTACAACCTTAGTGGTGAAAGTTAAGTGATCATGAGACATCGCCCTAGACCACTCGGCCACGGAGGACATTTATTTAAAGATTATATACCAAAATCATTTAAAATCATTTTACCACCAATAAAAACTTATATTTCTATTAAGATTAATAATTAGATACTGTAATAGATAGAATTAAAACATTCTAATTAAGTCATTGTGCTTAATGC
Unaligned ( gi|4 ): TCAATTTGAGTAGTCTCTTCTTGTTTTTTCAACACATTTCAGGTCATATATGGCACATACAGTTTTGTTGGTGGAGAAAACCTCAGAATGAATCCGAGTAGTCCTTTCGCAAGTAACTTTCTCACATAAAGCTTTTTGAGCGAGCGGGACTCTAACCTACGACCTAAGTGGTGAGAGTGATATTGCGACGACACATTAGACCACTCGGCCATGGAGGACCCTTCTAGTTTCTCTTAACATCAGTGGTGAAATTATCCAGACTTACATATTAAAATTGGGTATACATGTATGCATATATACTGAACAAAATAAGTAACTTCCGCTGTGTTTAAGTGCAGATATATATGTAAATACGAAAACAAGGGTAAAATTATTTTTATATGTATTGCAAGAGTATTTCAATGTGAATTTGTGTGGAAAATTTTATCGCTCTACGTTTACGGAAAACTGATGA
Unaligned ( gi|7 ): ATGTATTTTAATGGGGTTTAACGCCAATTTCAAACATAACTGTAATACCAAGAAATGAATCTCAATAGATCCAGCGTCCTTCTGCAAGTAGCCTCCCAATTTTCTCATAAAATGTTTTTGGGGTTCATCGGAGCGGGGATGTAACCAACAATTTAAGCAGTTGGAAGTAAGTGGTCATTTGTCAACACCACCTTGGACATCTTTGCCACTCATGACCACTCAGAGTTTTTGTGGTTTAAATGTTAAACAATGACTTATTAAATGTATTTCTCTGGACAAAAACAATAAAATGTTGGAAACTTCAGGGTCACTTGACTAGAAAAAAAACAATTTAATTAAG
Unaligned ( gi|12 ): GCTGGAGAGTAGTAGAATCTTGTTTGATGGTTTACTCATACTCTATACCAATGCAATTAAATCTTACAAGAATTGAAAGACTAAAAATCAATAACAGGATAATTAACTAAGTATCCAACAA
Unaligned ( gi|13 ): ATGTAACTAGCATTTCTCTCATGAAATTTTAATACCTAGCTTTGCTAGGCTCGAACCTACATGTATGATCTCAATAATAAGTAGTTACCAAAACATCCTAGACCAGTTAGCAACAGAGGAC
Unaligned ( gi|16 ): TTTCAGCATATTACAGGTCAAACATACATAGGCCAATACAGTTTAAGACCTATACTGAATCTGAGTAGAACTTTCGCAGGTTAATATCCT
Alignments
lowQualScore : 222222 1111111 111111 444444444444444 1111 1111111111 11 2222222222222222222222222 1111 1 88888888888888888888888888888888888888888888888888 1 3333333333 1 1 111 1 44444444444 222 11
lowQualScore : 66 888888 66 66 3333333 222222 111111111111111 1 9999 0 4 0 66 0000 22 88 77 77 1 9999999999 6 11 8888888888888888888888888 6 4444 8 0 1 9 11111111111111111111111111111111111111111111111111 0 4444444444 33 5 3 999 5 44444444444 1 1 2 1 1 1 1 1 111 1 88
lowQualScore : .. ...... .. .. ....... ...... ............... . .... . . . .. .... .. .. .. .. . .......... . .. ......................... . .... . . . . .................................................. . .......... .. . . ... . ........... . . . . . . . . ... . ..
lowQualScore : 11 000000 99 11 7777777 888888 666666666666666 0 1111 4 0 1 99 6666 44 44 99 99 7 3333333333 7 22 8888888888888888888888888 4 2222 0 0 0 6 11111111111111111111111111111111111111111111111111 0 5555555555 22 0 3 000 5 00000000000 0 0 5 0 0 0 0 0 555 0 55
consensus : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGGC-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
Reference ( family-35 ) : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAGCGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAAT----------TTG-AAAGAAT------AGAAAATGTCAACGGCCGGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
gi|1 : GCACCAGTCATTTTTTACACC-GAATC------TC--CCA--GAC-----TGGGACAT------AGCATAGGACAGT------GG-GG----CTGAAATCCCAGACTCTTACCTTATCAGTGTCCTCACA--GCTCATGAAGCTGGAGGAGTGCTTGGGAG----T
gi|1 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatTGCTTGGGAGTACCAGG-AT-CATGCGCTGTGTT-TTATCTACAC--------ATTTCCTGGGC-AATG-AAACCACATGAGAATTG-GAAG-AC------AGAAAATGTCAATAGTAAGAC-AATACATCAACAGCAACAaccaggatcatgcgctgtgttttatctacacatttcctgggcaatgaaaccacatgagaattggaagacagaaaatgtcaatagtaagacaatacatcaacagcaaca
gi|10 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatgcaccagtcattttttacaccgaatctcccagactgggacatagcataggacagtggggctgaaatcccagactcttaccttatcagtgtcctcacagctcatgaagctggaggag--GGC-----CAGTACAT------AGCAGAGGACA-CTACAGAAG-GT----CTCAAGTGT-----TTTTACCCCATCAACATTCTCTCA--A----TGGAGT-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CATTGAAAATAGTCGGGGATTAT--A------ATAGTGCCTCTTG
gi|11 : GCACCAATCAGTTGTTTTCCC-TGC-------ACCAACAA--GAC-----CAGGACAT------Atggcatacatgtgatcctaccaccggtagg
gi|14 : ctctgcgggactgggtcttacagtccttgtctgtatagagaaaaatcaaagtctcgtaGTCCTCGCA--G----TAACGT-GAA--TGTG--CAGGAG----TT----TTACTT-CA-TGCCAAAAACAGTCTGGGAT--TACA------GTTGTGCTTCTTTCCAGGGAGTATA-GA-AT-CTTGTGCAGCATT-G-----AC-C--------TAT-----attatacaagtatgaatatatatctaa
gi|15 : attGCACCAATCTTTTGATACCAC-AGTTC-----ACC--CCA--GGCCAGGACAGGACAT------AGTGGAGGACAGC-----AGG-GC----C-AAAATGCTGGACTTTTACTACATCAGCG-CCTCG
gi|17 : tGCACCATTCATTTGTTACCCC-AACTC-----ACC--CTA--GAA-----T-AGACAT------AGCGGGGTAAAG-TA---AGG-GG----CTa
gi|18 : tTCAACATTCCCCCAATG----TGTTGT-GGA--AGTG--TGGGAG-----T----TTATTT-Ctttaccagtcaagtgtcc
gi|5 : GCATCAGTCATTTGTTATTCT-GGCTC------TT--CAA--GGC-----TGGAACAT------AGCAAAGGACAAC-----AGG-GC-----TAAAGTAACAAGTTCTTATTACATTAATGTCACTGTA--G----TGTAGC-AGA--AGTG--TGGGGGAGGGTGGGGGTTACTT-CA-CATTAAAAATATTCTGGGAT--T--ATTCATTGTGGTGCCTTTTGCTGCAGAGTATC----AT-ACTGC-CTG-----------AC-----------AG-----GGC-AATG-GA-------------TG-AAAGGAA------AGAAAAT---AACAGC-GGAATAATACA---ACAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|6 : GCACCAGTCATTTGCTACCCT-GGCTC------CC--CCA--AGC-----TGGGCCAC------AGCAGAGGACAGCTATAAAGGAGC----CTTAAGTGTGGGGCTCTTACCATATCAGTGTCCCCTCA--G----TGCCAT-GGA--AGTC--TAGCAG----TT----TTACTT-CA-AATTAAA-----------AT--T--A------GTGGTGCCTTTTACCAAAAGGTACC-GG-AT-CTTGAGCAGTGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTGCAAAAAATTAATACAGAAAAAGCCAACGGCCGGAA-AATGCATC-ACCAAAACATAGGTCCCCAGGAGTAAAA-----------GGCATTTACCAGCAGAGAATTGCTGCAGCGCAGAGCATTTAACAGGG---CACAGCATTAGAAAAGTCAaagtatttgctacattcgggcctttttggtactgtagttacaaatgactggttggtgcattaaattgcaggtataagaatttacta
gi|8 : CACCAATCATTTGTTACCCCCAGCTC----------CCA----T-----TGGG-CATCTATAAAACAGAGAATAGC-------G-GTACTACTTAAGTATCGGGC-CTTACCGCATCAACATCTCCGCA--G----TGCCAA-GGA--CGTG--T---------TT----AAAATTGCAGGGTTATAA--GGT-TG------T--A------ACGGTGTTTTTTGCCTGGGACTATC-GGAATATTTAC-CCATGTTCT-----GC-CGGAGCGATAAA-----GGCTGGTGAGAATG---------TTG-AAA-AAT------AGAATATGTCAACGG
gi|9 : GCACGGGTCATT-GTTACCAC-AGCTCTGCCGACC--CCCTTGAC-----AGGAACAA------AGTGGGCAACAGCTG---TG--------CTAAAAT-CCAGACTCTTACCGCAACAATGTATCCGAA--G----TACC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AATTATAAGAAGTGTAAACAAACATTTTTCATCACTTAATCTATGGCGCAGTAATGAAATATTATCAATGCCATTTTCAGCACATTTTAGGTTACATATGGTGCATCCATTTTTTTTTTGGTGGAGGAAGAGCTCAGACTGAATCTGAAAAGAAGTCTTTACCGCAAATTTTCTCACATAAAATCTTTGGAGCGAGCGATATTTGAACCTACAACCTTTGAAGTGAGAGGTAAGTGATTATATGTTGCCAAAGACCACTTGGTCACAAATTTTAATGAAATATTTGTGAAATTAACCTTGTATAAAATCACTGCCCTTCAAATGATGGTTACACTCCAATGTAAAAGATATCAAACTGATGTGAAGTAACTGCTGTAACTGACATTGTTTCAAGATGCTGACGTAATACAAAGACTAGTGTCGACTTACATAATATATATAATGTTATCTATAGTATCTTGGAATACCTATATGTATGTTTATATTGTTCTTTATAGAAATGACCTGAA
Unaligned ( gi|3 ): AGTTATTTCCCTTAGACTATTTGCTGTTGACATTTGAAATCAAAGTATCCAGAGTACTGAAACCTGGACCATTTTACTTTTATTTATTTTTAATAGGGTTTAACGCCATTTTCAACTAATTTCAGGTTATATAGGTTATTTATGGCATATCCAGTATTAGTGGTAGAGTCAGACTGAGTAGAACCACCATCCATCCGCAAGTAACTGGAAACTTTCTCACATAAATTTTTTGGAGTGAGCAGGACTCGAACCTACAACCTTAGTGGTGAAAGTTAAGTGATCATGAGACATCGCCCTAGACCACTCGGCCACGGAGGACATTTATTTAAAGATTATATACCAAAATCATTTAAAATCATTTTACCACCAATAAAAACTTATATTTCTATTAAGATTAATAATTAGATACTGTAATAGATAGAATTAAAACATTCTAATTAAGTCATTGTGCTTAATGC
Unaligned ( gi|4 ): TCAATTTGAGTAGTCTCTTCTTGTTTTTTCAACACATTTCAGGTCATATATGGCACATACAGTTTTGTTGGTGGAGAAAACCTCAGAATGAATCCGAGTAGTCCTTTCGCAAGTAACTTTCTCACATAAAGCTTTTTGAGCGAGCGGGACTCTAACCTACGACCTAAGTGGTGAGAGTGATATTGCGACGACACATTAGACCACTCGGCCATGGAGGACCCTTCTAGTTTCTCTTAACATCAGTGGTGAAATTATCCAGACTTACATATTAAAATTGGGTATACATGTATGCATATATACTGAACAAAATAAGTAACTTCCGCTGTGTTTAAGTGCAGATATATATGTAAATACGAAAACAAGGGTAAAATTATTTTTATATGTATTGCAAGAGTATTTCAATGTGAATTTGTGTGGAAAATTTTATCGCTCTACGTTTACGGAAAACTGATGA
Unaligned ( gi|7 ): ATGTATTTTAATGGGGTTTAACGCCAATTTCAAACATAACTGTAATACCAAGAAATGAATCTCAATAGATCCAGCGTCCTTCTGCAAGTAGCCTCCCAATTTTCTCATAAAATGTTTTTGGGGTTCATCGGAGCGGGGATGTAACCAACAATTTAAGCAGTTGGAAGTAAGTGGTCATTTGTCAACACCACCTTGGACATCTTTGCCACTCATGACCACTCAGAGTTTTTGTGGTTTAAATGTTAAACAATGACTTATTAAATGTATTTCTCTGGACAAAAACAATAAAATGTTGGAAACTTCAGGGTCACTTGACTAGAAAAAAAACAATTTAATTAAG
Unaligned ( gi|12 ): GCTGGAGAGTAGTAGAATCTTGTTTGATGGTTTACTCATACTCTATACCAATGCAATTAAATCTTACAAGAATTGAAAGACTAAAAATCAATAACAGGATAATTAACTAAGTATCCAACAA
Unaligned ( gi|13 ): ATGTAACTAGCATTTCTCTCATGAAATTTTAATACCTAGCTTTGCTAGGCTCGAACCTACATGTATGATCTCAATAATAAGTAGTTACCAAAACATCCTAGACCAGTTAGCAACAGAGGAC
Unaligned ( gi|16 ): TTTCAGCATATTACAGGTCAAACATACATAGGCCAATACAGTTTAAGACCTATACTGAATCTGAGTAGAACTTTCGCAGGTTAATATCCT
Alignments
lowQualScore : 222222 1111111 111111 444444444444444 1111 1111111111 11 2222222222222222222222222 1111 1 666666666666666666666666666 1 1 444444444444 1 3333333333 111 1 111 1 44444444444 222 11
lowQualScore : 66 888888 66 66 3333333 222222 111111111111111 1 9999 0 4 0 66 0000 22 88 77 77 1 9999999999 6 11 8888888888888888888888888 6 4444 8 0 1 9 777777777777777777777777777 0 0 666666666666 0 4444444444 33 888 3 999 5 44444444444 1 1 2 1 1 1 1 1 111 1 88
lowQualScore : .. ...... .. .. ....... ...... ............... . .... . . . .. .... .. .. .. .. . .......... . .. ......................... . .... . . . . ........................... . . ............ . .......... .. ... . ... . ........... . . . . . . . . ... . ..
lowQualScore : 11 000000 99 11 7777777 888888 666666666666666 0 1111 4 0 1 99 6666 44 44 99 99 7 3333333333 7 22 8888888888888888888888888 4 2222 0 0 0 6 888888888888888888888888888 0 0 555555555555 0 5555555555 22 777 3 000 5 00000000000 0 0 5 0 0 0 0 0 555 0 55
consensus : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
Reference ( family-35 ) : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
gi|1 : GCACCAGTCATTTTTTACACC-GAATC------TC--CCA--GAC-----TGGGACAT------AGCATAGGACAGT------GG-GG----CTGAAATCCCAGACTCTTACCTTATCAGTGTCCTCACA--GCTCATGAAGCTGGAGGAGTGCTTGGGAG----T
gi|1 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatTGCTTGGGAGTACCAGG-AT-CATGCGCTGTGTT-TTATCTACAC--------ATTTCCTGGGC-AATG-AAACCACATGAGAATTG-GAAGA-C------AGAAAATGTCAATAG-TAAGAC-AATACATCAACAGCAACAaccaggatcatgcgctgtgttttatctacacatttcctgggcaatgaaaccacatgagaattggaagacagaaaatgtcaatagtaagacaatacatcaacagcaaca
gi|10 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatgcaccagtcattttttacaccgaatctcccagactgggacatagcataggacagtggggctgaaatcccagactcttaccttatcagtgtcctcacagctcatgaagctggaggag--GGC-----CAGTACAT------AGCAGAGGACA-CTACAGAAG-GT----CTCAAGTGT-----TTTTACCCCATCAACATTCTCTCA--A----TGGAGT-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CATTGAAAATAGTCGGGGATTAT--A------ATAGTGCCTCTTG
gi|11 : GCACCAATCAGTTGTTTTCCC-TGC-------ACCAACAA--GAC-----CAGGACAT------Atggcatacatgtgatcctaccaccggtagg
gi|14 : ctctgcgggactgggtcttacagtccttgtctgtatagagaaaaatcaaagtctcgtaGTCCTCGCA--G----TAACGT-GAA--TGTG--CAGGAG----TT----TTACTT-CA-TGCCAAAAACAGTCTGGGAT--TACA------GTTGTGCTTCTTTCCAGGGAGTATA-GA-AT-CTTGTGCAGCATT-G-----AC-C--------TAT-----attatacaagtatgaatatatatctaa
gi|15 : attGCACCAATCTTTTGATACCAC-AGTTC-----ACC--CCA--GGCCAGGACAGGACAT------AGTGGAGGACAGC-----AGG-GC----C-AAAATGCTGGACTTTTACTACATCAGCG-CCTCG
gi|17 : tGCACCATTCATTTGTTACCCC-AACTC-----ACC--CTA--GAA-----T-AGACAT------AGCGGGGTAAAG-TA---AGG-GG----CTa
gi|18 : tTCAACATTCCCCCAATG----TGTTGT-GGA--AGTG--TGGGAG-----T----TTATTT-Ctttaccagtcaagtgtcc
gi|5 : GCATCAGTCATTTGTTATTCT-GGCTC------TT--CAA--GGC-----TGGAACAT------AGCAAAGGACAAC-----AGG-GC-----TAAAGTAACAAGTTCTTATTACATTAATGTCACTGTA--G----TGTAGC-AGA--AGTG--TGGGGGAGGGTGGGGGTTACTT-CA-CATTAAAAATATTCTGGGAT--T--ATTCATTGTGGTGCCTTTTGCTGCAGAGTATC----AT-ACTGC-CTG-----------AC-----------AG-----GGC-AATG-GA-------------TG-AAAGGAA------AGAAAAT---AACAG-C-GGAATAATACA---ACAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|6 : GCACCAGTCATTTGCTACCCT-GGCTC------CC--CCA--AGC-----TGGGCCAC------AGCAGAGGACAGCTATAAAGGAGC----CTTAAGTGTGGGGCTCTTACCATATCAGTGTCCCCTCA--G----TGCCAT-GGA--AGTC--TAGCAG----TT----TTACTT-CA-AATTAAA-----------AT--T--A------GTGGTGCCTTTTACCAAAAGGTACC-GG-AT-CTTGAGCAGTGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTGCAAAAAATTAATACAGAAAAAGCCAACGGCC-GGAA-AATGCATC-ACCAAAACATAGGTCCCCAGGAGTAAAA-----------GGCATTTACCAGCAGAGAATTGCTGCAGCGCAGAGCATTTAACAGGG---CACAGCATTAGAAAAGTCAaagtatttgctacattcgggcctttttggtactgtagttacaaatgactggttggtgcattaaattgcaggtataagaatttacta
gi|8 : CACCAATCATTTGTTACCCCCAGCTC----------CCA----T-----TGGG-CATCTATAAAACAGAGAATAGC-------G-GTACTACTTAAGTATCGGGC-CTTACCGCATCAACATCTCCGCA--G----TGCCAA-GGA--CGTG--T---------TT----AAAATTGCAGGGTTATAA--GGT-TG------T--A------ACGGTGTTTTTTGCCTGGGACTATC-GGAATATTTAC-CCATGTTCT-----GC-CGGAGCGATAAA-----GGCTGGTGAGAATG---------TTG-AAA-AAT------AGAATATGTCAACGG-
gi|9 : GCACGGGTCATT-GTTACCAC-AGCTCTGCCGACC--CCCTTGAC-----AGGAACAA------AGTGGGCAACAGCTG---TG--------CTAAAAT-CCAGACTCTTACCGCAACAATGTATCCGAA--G----TACC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AATTATAAGAAGTGTAAACAAACATTTTTCATCACTTAATCTATGGCGCAGTAATGAAATATTATCAATGCCATTTTCAGCACATTTTAGGTTACATATGGTGCATCCATTTTTTTTTTGGTGGAGGAAGAGCTCAGACTGAATCTGAAAAGAAGTCTTTACCGCAAATTTTCTCACATAAAATCTTTGGAGCGAGCGATATTTGAACCTACAACCTTTGAAGTGAGAGGTAAGTGATTATATGTTGCCAAAGACCACTTGGTCACAAATTTTAATGAAATATTTGTGAAATTAACCTTGTATAAAATCACTGCCCTTCAAATGATGGTTACACTCCAATGTAAAAGATATCAAACTGATGTGAAGTAACTGCTGTAACTGACATTGTTTCAAGATGCTGACGTAATACAAAGACTAGTGTCGACTTACATAATATATATAATGTTATCTATAGTATCTTGGAATACCTATATGTATGTTTATATTGTTCTTTATAGAAATGACCTGAA
Unaligned ( gi|3 ): AGTTATTTCCCTTAGACTATTTGCTGTTGACATTTGAAATCAAAGTATCCAGAGTACTGAAACCTGGACCATTTTACTTTTATTTATTTTTAATAGGGTTTAACGCCATTTTCAACTAATTTCAGGTTATATAGGTTATTTATGGCATATCCAGTATTAGTGGTAGAGTCAGACTGAGTAGAACCACCATCCATCCGCAAGTAACTGGAAACTTTCTCACATAAATTTTTTGGAGTGAGCAGGACTCGAACCTACAACCTTAGTGGTGAAAGTTAAGTGATCATGAGACATCGCCCTAGACCACTCGGCCACGGAGGACATTTATTTAAAGATTATATACCAAAATCATTTAAAATCATTTTACCACCAATAAAAACTTATATTTCTATTAAGATTAATAATTAGATACTGTAATAGATAGAATTAAAACATTCTAATTAAGTCATTGTGCTTAATGC
Unaligned ( gi|4 ): TCAATTTGAGTAGTCTCTTCTTGTTTTTTCAACACATTTCAGGTCATATATGGCACATACAGTTTTGTTGGTGGAGAAAACCTCAGAATGAATCCGAGTAGTCCTTTCGCAAGTAACTTTCTCACATAAAGCTTTTTGAGCGAGCGGGACTCTAACCTACGACCTAAGTGGTGAGAGTGATATTGCGACGACACATTAGACCACTCGGCCATGGAGGACCCTTCTAGTTTCTCTTAACATCAGTGGTGAAATTATCCAGACTTACATATTAAAATTGGGTATACATGTATGCATATATACTGAACAAAATAAGTAACTTCCGCTGTGTTTAAGTGCAGATATATATGTAAATACGAAAACAAGGGTAAAATTATTTTTATATGTATTGCAAGAGTATTTCAATGTGAATTTGTGTGGAAAATTTTATCGCTCTACGTTTACGGAAAACTGATGA
Unaligned ( gi|7 ): ATGTATTTTAATGGGGTTTAACGCCAATTTCAAACATAACTGTAATACCAAGAAATGAATCTCAATAGATCCAGCGTCCTTCTGCAAGTAGCCTCCCAATTTTCTCATAAAATGTTTTTGGGGTTCATCGGAGCGGGGATGTAACCAACAATTTAAGCAGTTGGAAGTAAGTGGTCATTTGTCAACACCACCTTGGACATCTTTGCCACTCATGACCACTCAGAGTTTTTGTGGTTTAAATGTTAAACAATGACTTATTAAATGTATTTCTCTGGACAAAAACAATAAAATGTTGGAAACTTCAGGGTCACTTGACTAGAAAAAAAACAATTTAATTAAG
Unaligned ( gi|12 ): GCTGGAGAGTAGTAGAATCTTGTTTGATGGTTTACTCATACTCTATACCAATGCAATTAAATCTTACAAGAATTGAAAGACTAAAAATCAATAACAGGATAATTAACTAAGTATCCAACAA
Unaligned ( gi|13 ): ATGTAACTAGCATTTCTCTCATGAAATTTTAATACCTAGCTTTGCTAGGCTCGAACCTACATGTATGATCTCAATAATAAGTAGTTACCAAAACATCCTAGACCAGTTAGCAACAGAGGAC
Unaligned ( gi|16 ): TTTCAGCATATTACAGGTCAAACATACATAGGCCAATACAGTTTAAGACCTATACTGAATCTGAGTAGAACTTTCGCAGGTTAATATCCT
Alignments
lowQualScore : 222222 1111111 111111 444444444444444 1111 1111111111 11 2222222222222222222222222 1111 1 666666666666666666666666666 1 1 444444444444 1 3333333333 111 1 111 1 44444444444 222 11
lowQualScore : 66 888888 66 66 3333333 222222 111111111111111 1 9999 0 4 0 66 0000 22 88 77 77 1 9999999999 6 11 8888888888888888888888888 6 4444 8 0 1 9 777777777777777777777777777 0 0 666666666666 0 4444444444 33 888 3 999 5 44444444444 1 1 2 1 1 1 1 1 111 1 88
lowQualScore : .. ...... .. .. ....... ...... ............... . .... . . . .. .... .. .. .. .. . .......... . .. ......................... . .... . . . . ........................... . . ............ . .......... .. ... . ... . ........... . . . . . . . . ... . ..
lowQualScore : 11 000000 99 11 7777777 888888 666666666666666 0 1111 4 0 1 99 6666 44 44 99 99 7 3333333333 7 22 8888888888888888888888888 4 2222 0 0 0 6 888888888888888888888888888 0 0 555555555555 0 5555555555 22 777 3 000 5 00000000000 0 0 5 0 0 0 0 0 555 0 55
consensus : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
Reference ( family-35 ) : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
gi|1 : GCACCAGTCATTTTTTACACC-GAATC------TC--CCA--GAC-----TGGGACAT------AGCATAGGACAGT------GG-GG----CTGAAATCCCAGACTCTTACCTTATCAGTGTCCTCACA--GCTCATGAAGCTGGAGGAGTGCTTGGGAG----T
gi|1 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatTGCTTGGGAGTACCAGG-AT-CATGCGCTGTGTT-TTATCTACAC--------ATTTCCTGGGC-AATG-AAACCACATGAGAATTG-GAAGA-C------AGAAAATGTCAATAG-TAAGAC-AATACATCAACAGCAACAaccaggatcatgcgctgtgttttatctacacatttcctgggcaatgaaaccacatgagaattggaagacagaaaatgtcaatagtaagacaatacatcaacagcaaca
gi|10 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatgcaccagtcattttttacaccgaatctcccagactgggacatagcataggacagtggggctgaaatcccagactcttaccttatcagtgtcctcacagctcatgaagctggaggag--GGC-----CAGTACAT------AGCAGAGGACA-CTACAGAAG-GT----CTCAAGTGT-----TTTTACCCCATCAACATTCTCTCA--A----TGGAGT-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CATTGAAAATAGTCGGGGATTAT--A------ATAGTGCCTCTTG
gi|11 : GCACCAATCAGTTGTTTTCCC-TGC-------ACCAACAA--GAC-----CAGGACAT------Atggcatacatgtgatcctaccaccggtagg
gi|14 : ctctgcgggactgggtcttacagtccttgtctgtatagagaaaaatcaaagtctcgtaGTCCTCGCA--G----TAACGT-GAA--TGTG--CAGGAG----TT----TTACTT-CA-TGCCAAAAACAGTCTGGGAT--TACA------GTTGTGCTTCTTTCCAGGGAGTATA-GA-AT-CTTGTGCAGCATT-G-----AC-C--------TAT-----attatacaagtatgaatatatatctaa
gi|15 : attGCACCAATCTTTTGATACCAC-AGTTC-----ACC--CCA--GGCCAGGACAGGACAT------AGTGGAGGACAGC-----AGG-GC----C-AAAATGCTGGACTTTTACTACATCAGCG-CCTCG
gi|17 : tGCACCATTCATTTGTTACCCC-AACTC-----ACC--CTA--GAA-----T-AGACAT------AGCGGGGTAAAG-TA---AGG-GG----CTa
gi|18 : tTCAACATTCCCCCAATG----TGTTGT-GGA--AGTG--TGGGAG-----T----TTATTT-Ctttaccagtcaagtgtcc
gi|5 : GCATCAGTCATTTGTTATTCT-GGCTC------TT--CAA--GGC-----TGGAACAT------AGCAAAGGACAAC-----AGG-GC-----TAAAGTAACAAGTTCTTATTACATTAATGTCACTGTA--G----TGTAGC-AGA--AGTG--TGGGGGAGGGTGGGGGTTACTT-CA-CATTAAAAATATTCTGGGAT--T--ATTCATTGTGGTGCCTTTTGCTGCAGAGTATC----AT-ACTGC-CTG-----------AC-----------AG-----GGC-AATG-GA-------------TG-AAAGGAA------AGAAAAT---AACAG-C-GGAATAATACA---ACAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|6 : GCACCAGTCATTTGCTACCCT-GGCTC------CC--CCA--AGC-----TGGGCCAC------AGCAGAGGACAGCTATAAAGGAGC----CTTAAGTGTGGGGCTCTTACCATATCAGTGTCCCCTCA--G----TGCCAT-GGA--AGTC--TAGCAG----TT----TTACTT-CA-AATTAAA-----------AT--T--A------GTGGTGCCTTTTACCAAAAGGTACC-GG-AT-CTTGAGCAGTGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTGCAAAAAATTAATACAGAAAAAGCCAACGGCC-GGAA-AATGCATC-ACCAAAACATAGGTCCCCAGGAGTAAAA-----------GGCATTTACCAGCAGAGAATTGCTGCAGCGCAGAGCATTTAACAGGG---CACAGCATTAGAAAAGTCAaagtatttgctacattcgggcctttttggtactgtagttacaaatgactggttggtgcattaaattgcaggtataagaatttacta
gi|8 : CACCAATCATTTGTTACCCCCAGCTC----------CCA----T-----TGGG-CATCTATAAAACAGAGAATAGC-------G-GTACTACTTAAGTATCGGGC-CTTACCGCATCAACATCTCCGCA--G----TGCCAA-GGA--CGTG--T---------TT----AAAATTGCAGGGTTATAA--GGT-TG------T--A------ACGGTGTTTTTTGCCTGGGACTATC-GGAATATTTAC-CCATGTTCT-----GC-CGGAGCGATAAA-----GGCTGGTGAGAATG---------TTG-AAA-AAT------AGAATATGTCAACGG-
gi|9 : GCACGGGTCATT-GTTACCAC-AGCTCTGCCGACC--CCCTTGAC-----AGGAACAA------AGTGGGCAACAGCTG---TG--------CTAAAAT-CCAGACTCTTACCGCAACAATGTATCCGAA--G----TACC
blockSeqs : CA TGCCGA AA TT CAGGACA CTATAA TATAAAGGAGC C GCTG C AT . GA T . . G AGGGTGGGGG G GG AATATTCTGGGATTATTCATT A GGA A G A C CTGCCGGAGCGATAAA T A ATC C AAATTAATAC GC CC T TC A . A A G C A A A A . C TT
blockSeqs : T A . . CA . TACAGAAGGT A AACA A . . AC T . . A TT . T AACAGTCTGGGATTACA G GA . G T T GACCTAT . . ATG . GGAA GT C . .
blockSeqs : A A . . CA . TAAGGGG A GTGG A . . TT T . . G TT . C AGGTTGTA A GG . . A T TACCAAT . . . . AAT .
blockSeqs : A A . . TG . GGTACTA T ATCG A . . TA C . . G TT . A ATTA T . . . C . ACAG
blockSeqs : G . . . TG . AGGGC T CCA G . . CC T . . A T .
blockSeqs : G . . . TG . AGGGC A GT G . . CC A . . .
blockSeqs : A . . . AG . TGTG . . CC
blockSeqs : . T .
blockSeqCons : TAAGGGC******** **** T* ** ** AGGTTGCA***************** GG** ACCAN**********************
originalCons : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGC-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGAT--T--A------GTGGTGCCTTTTGCCGGGGAGTATC-GG-AT-CTTGCGCNGCGTT-T-----AC-C--------AAT-----GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
finalCons : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTAAGGGC--------CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCGT-GGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAGGTTGCA-----------------GTGGTGCCTTTTGCCGGGGAGTATCGG--AT-CTTGCGCNGCGTTACCAN----------------------GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AATTATAAGAAGTGTAAACAAACATTTTTCATCACTTAATCTATGGCGCAGTAATGAAATATTATCAATGCCATTTTCAGCACATTTTAGGTTACATATGGTGCATCCATTTTTTTTTTGGTGGAGGAAGAGCTCAGACTGAATCTGAAAAGAAGTCTTTACCGCAAATTTTCTCACATAAAATCTTTGGAGCGAGCGATATTTGAACCTACAACCTTTGAAGTGAGAGGTAAGTGATTATATGTTGCCAAAGACCACTTGGTCACAAATTTTAATGAAATATTTGTGAAATTAACCTTGTATAAAATCACTGCCCTTCAAATGATGGTTACACTCCAATGTAAAAGATATCAAACTGATGTGAAGTAACTGCTGTAACTGACATTGTTTCAAGATGCTGACGTAATACAAAGACTAGTGTCGACTTACATAATATATATAATGTTATCTATAGTATCTTGGAATACCTATATGTATGTTTATATTGTTCTTTATAGAAATGACCTGAA
Unaligned ( gi|3 ): AGTTATTTCCCTTAGACTATTTGCTGTTGACATTTGAAATCAAAGTATCCAGAGTACTGAAACCTGGACCATTTTACTTTTATTTATTTTTAATAGGGTTTAACGCCATTTTCAACTAATTTCAGGTTATATAGGTTATTTATGGCATATCCAGTATTAGTGGTAGAGTCAGACTGAGTAGAACCACCATCCATCCGCAAGTAACTGGAAACTTTCTCACATAAATTTTTTGGAGTGAGCAGGACTCGAACCTACAACCTTAGTGGTGAAAGTTAAGTGATCATGAGACATCGCCCTAGACCACTCGGCCACGGAGGACATTTATTTAAAGATTATATACCAAAATCATTTAAAATCATTTTACCACCAATAAAAACTTATATTTCTATTAAGATTAATAATTAGATACTGTAATAGATAGAATTAAAACATTCTAATTAAGTCATTGTGCTTAATGC
Unaligned ( gi|4 ): TCAATTTGAGTAGTCTCTTCTTGTTTTTTCAACACATTTCAGGTCATATATGGCACATACAGTTTTGTTGGTGGAGAAAACCTCAGAATGAATCCGAGTAGTCCTTTCGCAAGTAACTTTCTCACATAAAGCTTTTTGAGCGAGCGGGACTCTAACCTACGACCTAAGTGGTGAGAGTGATATTGCGACGACACATTAGACCACTCGGCCATGGAGGACCCTTCTAGTTTCTCTTAACATCAGTGGTGAAATTATCCAGACTTACATATTAAAATTGGGTATACATGTATGCATATATACTGAACAAAATAAGTAACTTCCGCTGTGTTTAAGTGCAGATATATATGTAAATACGAAAACAAGGGTAAAATTATTTTTATATGTATTGCAAGAGTATTTCAATGTGAATTTGTGTGGAAAATTTTATCGCTCTACGTTTACGGAAAACTGATGA
Unaligned ( gi|7 ): ATGTATTTTAATGGGGTTTAACGCCAATTTCAAACATAACTGTAATACCAAGAAATGAATCTCAATAGATCCAGCGTCCTTCTGCAAGTAGCCTCCCAATTTTCTCATAAAATGTTTTTGGGGTTCATCGGAGCGGGGATGTAACCAACAATTTAAGCAGTTGGAAGTAAGTGGTCATTTGTCAACACCACCTTGGACATCTTTGCCACTCATGACCACTCAGAGTTTTTGTGGTTTAAATGTTAAACAATGACTTATTAAATGTATTTCTCTGGACAAAAACAATAAAATGTTGGAAACTTCAGGGTCACTTGACTAGAAAAAAAACAATTTAATTAAG
Unaligned ( gi|12 ): GCTGGAGAGTAGTAGAATCTTGTTTGATGGTTTACTCATACTCTATACCAATGCAATTAAATCTTACAAGAATTGAAAGACTAAAAATCAATAACAGGATAATTAACTAAGTATCCAACAA
Unaligned ( gi|13 ): ATGTAACTAGCATTTCTCTCATGAAATTTTAATACCTAGCTTTGCTAGGCTCGAACCTACATGTATGATCTCAATAATAAGTAGTTACCAAAACATCCTAGACCAGTTAGCAACAGAGGAC
Unaligned ( gi|16 ): TTTCAGCATATTACAGGTCAAACATACATAGGCCAATACAGTTTAAGACCTATACTGAATCTGAGTAGAACTTTCGCAGGTTAATATCCT
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 222222 1111111 111111 444444444444444 1111 1111111111 11 00000000000000000000 888888888888888888888888888888888888888888888888 1 1 444444444444 1 3333333333 111 1 111 1 44444444444 222 11
lowQualScore : 66 888888 66 66 3333333 222222 111111111111111 1 9999 0 4 0 66 0000 22 5 77 77 1 9999999999 6 11 66666666666666666666 6 8 000000000000000000000000000000000000000000000000 0 0 666666666666 0 4444444444 33 888 3 999 5 44444444444 1 1 2 1 1 1 1 1 111 1 88
lowQualScore : .. ...... .. .. ....... ...... ............... . .... . . . .. .... .. . .. .. . .......... . .. .................... . . ................................................ . . ............ . .......... .. ... . ... . ........... . . . . . . . . ... . ..
lowQualScore : 11 000000 99 11 7777777 888888 666666666666666 0 1111 4 0 1 99 6666 44 0 99 99 7 3333333333 7 22 66666666666666666666 4 0 333333333333333333333333333333333333333333333333 0 0 555555555555 0 5555555555 22 777 3 000 5 00000000000 0 0 5 0 0 0 0 0 555 0 55
consensus : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCG-TGGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAAATAGTCTGGGATTA--CA--GTGGTGCCTTTTGCCGGGGAGTATC-GGA--------------TCTTGCGCAGCG-TT------AC-C-AN------GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
Reference ( family-35 ) : GCACCAGTCATTTGTTACCCC-GGCTC-----ACC--CCA--GGC-----CGGGACAT------AGCGGAGGACAGCTA---AGG-GC----CTNAAGTGCCGGGCTCTTACCGCATCAACGTCCCCGCA--G----TGNCG-TGGA--AGTG--TGGGAG----TT----TTACTT-CA-CGTTAAAA---------GGTTG--CA--GTGGTGCCTTTTGCCGGGGAGTATC-GGA--------------TCTTGCGCNGCG-TT------AC-C-AN------GGC-AATG-GAATC---------TTG-AAAGAAT------AGAAAATGTCAACGG-C-GGAA-AATACATC-ACAGCAACATAGGTCCCCAGGGGCAAAAACTATTAGTAGGGCNTTTACCAGCAGAGANTCGCTGCAGNGCAGNGCNTTTANCNGGGTTACGCAGNATTAGAAAAGTCA
gi|1 : GCACCAGTCATTTTTTACACC-GAATC------TC--CCA--GAC-----TGGGACAT------AGCATAGGACAGT------GG-GG----CTGAAATCCCAGACTCTTACCTTATCAGTGTCCTCACA--GCTCATGAAGCTGGAGGAGTGCTTGGGAG----T
gi|1 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatTGCTTGGGAGTACCAGGA--------------TCATGCGCTGTG-TTTTATCTACAC-ATTTCCTGGGC-AATG-AAACCACATGAGAATTG-GAAGA-C------AGAAAATGTCAATAG-TAAGAC-AATACATCAACAGCAACAaccaggatcatgcgctgtgttttatctacacatttcctgggcaatgaaaccacatgagaattggaagacagaaaatgtcaatagtaagacaatacatcaacagcaaca
gi|10 : gtaaatgtatgttgtattgagacattgaagtcaaatgtagacttacagaaccagatatatttgtggtgttgtttatagcatcttgaaaactgttttttctggttccttatagagatgacctgaaaattaaatggtaaatgttatccaagttattggtataaagaatcacactttcatgcttgacttttatcaaatttattaatacacattgccaaagatcatgaactccacagagcctcacaaaatgtatttttgccaactcatttactaagttcgcaaataattgagcattcatgtaagatcctctatttatgaatccttagactcatgcaccagtcattttttacaccgaatctcccagactgggacatagcataggacagtggggctgaaatcccagactcttaccttatcagtgtcctcacagctcatgaagctggaggag--GGC-----CAGTACAT------AGCAGAGGACA-CTACAGAAG-GT----CTCAAGTGT-----TTTTACCCCATCAACATTCTCTCA--A----TGGAG-TGGA--AGTG--TGGGAG----TT----TTACTT-CA-CATTGAAAATAGTCGGGGATTA--TA--ATAGTGCCTCTTG
gi|11 : GCACCAATCAGTTGTTTTCCC-TGC-------ACCAACAA--GAC-----CAGGACAT------Atggcatacatgtgatcctaccaccggtagg
gi|14 : ctctgcgggactgggtcttacagtccttgtctgtatagagaaaaatcaaagtctcgtaGTCCTCGCA--G----TAACG-TGAA--TGTG--CAGGAG----TT----TTACTT-CA-TGCCAAAAACAGTCTGGGATTA--CA--GTTGTGCTTCTTTCCAGGGAGTATA-GAA--------------TCTTGTGCAGCA-TTG-----AC-C-attatacaagtatgaatatatatctaa
gi|15 : attGCACCAATCTTTTGATACCAC-AGTTC-----ACC--CCA--GGCCAGGACAGGACAT------AGTGGAGGACAGC-----AGG-GC----C-AAAATGCTGGACTTTTACTACATCAGCG-CCTCGtat
gi|17 : tGCACCATTCATTTGTTACCCC-AACTC-----ACC--CTA--GAA-----T-AGACAT------AGCGGGGTAAAG-TA---AGG-GG----CTa
gi|18 : tTCAACATTCCCCCAATG----TGTTG-TGGA--AGTG--TGGGAG-----T----TTATTT-Ctttaccagtcaagtgtcc
gi|5 : GCATCAGTCATTTGTTATTCT-GGCTC------TT--CAA--GGC-----TGGAACAT------AGCAAAGGACAAC-----AGG-GC-----TAAAGTAACAAGTTCTTATTACATTAATGTCACTGTA--G----TGTAG-CAGA--AGTG--TGGGGGAGGGTGGGGGTTACTT-CA-CATTAAAAATATTCTGGGATTATTCATTGTGGTGCCTTTTGCTGCAGAGTATC---A--------------TACTGC-CTG-----------AC---AG------GGC-AATG-GA-------------TG-AAAGGAA------AGAAAAT---AACAG-C-GGAATAATACA---ACAGCAACAT-GGTTCCCAGGGACAAAAACTATTAGTAGGGCTTTTACCAGCAAAAATTCCCTGCAGGGCAGTGTCTTTACCTGGGTTATGCAAAA--AGAAAAGTCA
gi|6 : GCACCAGTCATTTGCTACCCT-GGCTC------CC--CCA--AGC-----TGGGCCAC------AGCAGAGGACAGCTATAAAGGAGC----CTTAAGTGTGGGGCTCTTACCATATCAGTGTCCCCTCA--G----TGCCA-TGGA--AGTC--TAGCAG----TT----TTACTT-CA-AATTAAAA-----------TT----A--GTGGTGCCTTTTACCAAAAGGTACC-GGA--------------TCTTGAGCAGTGTTT------AC-CAAT------GGC-AATG-GAATC---------TTGCAAAAAATTAATACAGAAAAAGCCAACGGCC-GGAA-AATGCATC-ACCAAAACATAGGTCCCCAGGAGTAAAA-----------GGCATTTACCAGCAGAGAATTGCTGCAGCGCAGAGCATTTAACAGGG---CACAGCATTAGAAAAGTCAaagtatttgctacattcgggcctttttggtactgtagttacaaatgactggttggtgcattaaattgcaggtataagaatttacta
gi|8 : CACCAATCATTTGTTACCCCCAGCTC----------CCA----T-----TGGG-CATCTATAAAACAGAGAATAGC-------G-GTACTACTTAAGTATCGGGC-CTTACCGCATCAACATCTCCGCA--G----TGCCA-AGGA--CGTG--T---------TT----AAAATTGCAGGGTTATAA---------GGTTG--TA--ACGGTGTTTTTTGCCTGGGACTATC-GGAATATTTACCCATGTTCTGCCGGAGCG-AT------A----AA------GGCTGGTGAGAATG---------TTG-AAA-AAT------AGAATATGTCAACGG-
gi|9 : GCACGGGTCATT-GTTACCAC-AGCTCTGCCGACC--CCCTTGAC-----AGGAACAA------AGTGGGCAACAGCTG---TG--------CTAAAAT-CCAGACTCTTACCGCAACAATGTATCCGAA--G----TACCT-TG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AATTATAAGAAGTGTAAACAAACATTTTTCATCACTTAATCTATGGCGCAGTAATGAAATATTATCAATGCCATTTTCAGCACATTTTAGGTTACATATGGTGCATCCATTTTTTTTTTGGTGGAGGAAGAGCTCAGACTGAATCTGAAAAGAAGTCTTTACCGCAAATTTTCTCACATAAAATCTTTGGAGCGAGCGATATTTGAACCTACAACCTTTGAAGTGAGAGGTAAGTGATTATATGTTGCCAAAGACCACTTGGTCACAAATTTTAATGAAATATTTGTGAAATTAACCTTGTATAAAATCACTGCCCTTCAAATGATGGTTACACTCCAATGTAAAAGATATCAAACTGATGTGAAGTAACTGCTGTAACTGACATTGTTTCAAGATGCTGACGTAATACAAAGACTAGTGTCGACTTACATAATATATATAATGTTATCTATAGTATCTTGGAATACCTATATGTATGTTTATATTGTTCTTTATAGAAATGACCTGAA
Unaligned ( gi|3 ): AGTTATTTCCCTTAGACTATTTGCTGTTGACATTTGAAATCAAAGTATCCAGAGTACTGAAACCTGGACCATTTTACTTTTATTTATTTTTAATAGGGTTTAACGCCATTTTCAACTAATTTCAGGTTATATAGGTTATTTATGGCATATCCAGTATTAGTGGTAGAGTCAGACTGAGTAGAACCACCATCCATCCGCAAGTAACTGGAAACTTTCTCACATAAATTTTTTGGAGTGAGCAGGACTCGAACCTACAACCTTAGTGGTGAAAGTTAAGTGATCATGAGACATCGCCCTAGACCACTCGGCCACGGAGGACATTTATTTAAAGATTATATACCAAAATCATTTAAAATCATTTTACCACCAATAAAAACTTATATTTCTATTAAGATTAATAATTAGATACTGTAATAGATAGAATTAAAACATTCTAATTAAGTCATTGTGCTTAATGC
Unaligned ( gi|4 ): TCAATTTGAGTAGTCTCTTCTTGTTTTTTCAACACATTTCAGGTCATATATGGCACATACAGTTTTGTTGGTGGAGAAAACCTCAGAATGAATCCGAGTAGTCCTTTCGCAAGTAACTTTCTCACATAAAGCTTTTTGAGCGAGCGGGACTCTAACCTACGACCTAAGTGGTGAGAGTGATATTGCGACGACACATTAGACCACTCGGCCATGGAGGACCCTTCTAGTTTCTCTTAACATCAGTGGTGAAATTATCCAGACTTACATATTAAAATTGGGTATACATGTATGCATATATACTGAACAAAATAAGTAACTTCCGCTGTGTTTAAGTGCAGATATATATGTAAATACGAAAACAAGGGTAAAATTATTTTTATATGTATTGCAAGAGTATTTCAATGTGAATTTGTGTGGAAAATTTTATCGCTCTACGTTTACGGAAAACTGATGA
Unaligned ( gi|7 ): ATGTATTTTAATGGGGTTTAACGCCAATTTCAAACATAACTGTAATACCAAGAAATGAATCTCAATAGATCCAGCGTCCTTCTGCAAGTAGCCTCCCAATTTTCTCATAAAATGTTTTTGGGGTTCATCGGAGCGGGGATGTAACCAACAATTTAAGCAGTTGGAAGTAAGTGGTCATTTGTCAACACCACCTTGGACATCTTTGCCACTCATGACCACTCAGAGTTTTTGTGGTTTAAATGTTAAACAATGACTTATTAAATGTATTTCTCTGGACAAAAACAATAAAATGTTGGAAACTTCAGGGTCACTTGACTAGAAAAAAAACAATTTAATTAAG
Unaligned ( gi|12 ): GCTGGAGAGTAGTAGAATCTTGTTTGATGGTTTACTCATACTCTATACCAATGCAATTAAATCTTACAAGAATTGAAAGACTAAAAATCAATAACAGGATAATTAACTAAGTATCCAACAA
Unaligned ( gi|13 ): ATGTAACTAGCATTTCTCTCATGAAATTTTAATACCTAGCTTTGCTAGGCTCGAACCTACATGTATGATCTCAATAATAAGTAGTTACCAAAACATCCTAGACCAGTTAGCAACAGAGGAC
Unaligned ( gi|16 ): TTTCAGCATATTACAGGTCAAACATACATAGGCCAATACAGTTTAAGACCTATACTGAATCTGAGTAGAACTTTCGCAGGTTAATATCCT