lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222 44444444444444444444444444444444444444444444444444444444444444 4444444444444444444 333333333333333 444444444444 33333333 8888888888888888888888888888 11 3333 11111 11 222222 111 3333333333333333 111 11 2222222 1 1 1 111 3333
lowQualScore : 6 2 0 33 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666 3 33333333333333 3 88888888888888888888888888888888888888888888888888888888888888 4 5555555555555555555 88 0 777777777777777 222222222222 9 1 66 2 4 22222222 6 4 3 4444444444444444444444444444 8 88 1 6 99 3 6 33 1111 4 77777 6 11 666666 777 5555555555555555 444 8 33 4444444 0 1 3 1 6 5 1 000 66 3333
lowQualScore : . . . .. . ............................................................................... . .............. . .............................................................. . ................... .. . ............... ............ . . .. . . ........ . . . ............................ . .. . . .. . . .. .... . ..... . .. ...... ... ................ ... . .. ....... . . . . . . . ... .. ....
lowQualScore : 0 9 1 99 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333 6 99999999999999 6 99999999999999999999999999999999999999999999999999999999999999 7 3333333333333333333 11 1 111111111111111 777777777777 2 0 00 5 0 44444444 0 8 0 4444444444444444444444444444 0 66 8 7 33 5 0 55 5555 2 00000 7 00 000000 555 6666666666666666 000 0 00 7777777 0 0 7 0 0 3 0 222 22 0000
consensus : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACCCGATCTC--A--TTT--TT----------TTTC-------A-T--T----TT-TTT---A---------TCA-AAT------CT-A----TGTTCAATCCAT-C----------G--T-AT--------A---T---AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGTAAAG-GCCTTTTACTTC---AAAGAACGG-CCCACATACC-CC-AA--C---TGTCTTCAGACACCCGCTGTGCAAAANCTATAA----CG--AATATTCTTATACGGCAT-T-------AC--A--GAAAGCTANGAGGAGG-TATTACGNGACAAA-ATAAGCCCAACGTCAGAAATATTGAGCCAGCCGTTCCGG--AATAA----GAC-CCTT--TCAAATC---GTCCAT---TTAGGGGCTAAAAAGNTTANT-----C-GT---AA-ATAAAGTGGC-ACACGTT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAG--CCTGGTATGGCAACACGTTTCAAAGAAAGTC
Reference ( gi|4 ) : CAGGTAGGAGTAACGGACCTT-GGTTAGTC--CC-CA-----TACCCAATCTC--A--TTT--TT----------TTTC-------A-T--T----TT-TTTA--A---------TCA-AAT------CT-C----TGTTCAATCCAT-C----------A--T-AT--------G---T---AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGTAAAA-GCCTTTTACTTC---GAAGCACAG-CACACATACC-CT-AT--C---TGTCTTCAGACATCCACTGTGCAAAAACTATAA----CA--AATATTCTTGTACAGTAAGT-------AC--A--GACAGCTGTG-GGAGG-TATTGCGTGACAAA-ATAAGCCCAACAACAGAAATATTGAGTCGACCGTTCCTT--AATAA----AAC-CCTT--TCAAATT---GATCAT---TTAGGGGCTAAAGAGGCTATT-----T-GT---AA-ATAAAGTGGC-ACACACT--T-TAACGGATTATTAAAAGACTGAAAAGGCTCAACACAACTGTAG--TCTGGTATGACAACATGTTTCAACAGGAGTCTGTAAACTTGAATAAA
gi|5 : CATGCAGGAGTAACGGCCCTT-GGTGAGTT--CC-CC-----CACCCCATCGG--A--TTT--TTTTAACCTTTATTTC-------A-T--T----TT-TTC---C---------CCA-AAT------CT-A----TGTTCAATCCAT-C----------G--T-AT--------A---T---ATCG-------AAC------AA---A---AAGTGACAAACATAA-----G------TTGAGTAAAG-GCATTTT
gi|2 : aCAAACAGGAATAACGGACCTT-AGTCAGTC--CC-CA------ACCCACTAAC--C--TTT--TA----------TATC-------A-T--T----TTATTTcatgaagtgacaaaataagcccaacaacaaaaatattgagcctgccgttccggaacaagacccttttaaatcgcccatataggggctgaaaagtttagtcataaataaagtgacacatttgttaacgggtaattgcaagactaaggcggctcaacacaattatagcctggtacgacatgttttaaagaaagtcaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|11 : taaattaCAGGCAGAACTAACCGAAATT-GATTAGTC--CC-CAAAATCTACACCACCTCTAA--TTT--TT----------GTTCTCAATGAA-T--TATTGTT-TTTA--ATTTTCTGCTTCA-AAT------CT-T----CGTTCAATCCAT-C----------G--T-AT--------A---T---AACA-------ttccaagttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccattaagggctacaatggttattacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|16 : CAGGCAGGAGCAACGGACCTT-GGTTAGTC--
gi|12 : caCAGGCAGGAGTAACGCCCCTT-GATTAGCC--CC-TA-----TAC
gi|15 : CAAGCAGGAGTAACGGACTTT-GGTCATTC--CC-Cttcaggtataaatataaaaaaaattaaatcaatgttcaatccatcatatataactaaaaaaaagtcacaa
gi|1 : acaAGACAGAAGTAACGGACCTT-GGTTAGTC-------------ACCCCACCAC--C--TTTGATT----------TCTT-------A-G--T----TT-TTCA--A-----------A-AAT------catccctc
gi|7 : gacaggagtaacgaaccacgccctctgatttcttttttttttattcttttttcataattgctttctatgtgcaatccatcgtatataatatactaattaaacataattaacaaacattagttgagtaaagaccgtttacttcacataccccaaactaccgttagacacctgcagtgcaaaatgtataacgaatattcttatatggcatacactaaaagctagaggatattacgcgacaaaataagataaacgtcattgagccagccgtattggaacaaaatccttcaaaatggttcatttaggggataaaacgttgtcgtaaataaagtggcacattttaacggtttagaacaagactaaaacgactcaacacaactatagcctggtatagccgaatgtttcaaagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacAGGCAGGAATATCGGACCTT-GTTTAGTC--TT-AAAC---TGCC---TCTG--AATTTT--TTATCTGTATACTTTCGAAAAC-A-T--T----TC-TTT-------------TCA-AAT------CC-A----TATATAACCCAT-C----------C--T-ATCCACTTGTG---TTACAACA-------AAT-ACATAAA---A---AAGTGACA-----AA-----C------ATAAGTTAAC--CCCATTAATTC---AAAGAACGG-TCCACATACC-CC-----CGAGTGTCTGCAGATATCCGCTGCGCAAAATCTATAAATGCTAGTAGTATTCTTATACGGCA--T-------AC--AAAGAAAGAT-TGAGGAAA-TATTCAGGGAAAGA-ATAAGCCAAACGTCAGAAATATAAAGCCAGTCGCTCCGG--AGTAA----TAC-atga
gi|14 : caaGCAGAAATAATGGACATT-GGTAAGTC--CCACA-----CACCC--TCTG--A--TTT--TT----------TTTCA------A-T--T----TT-TCTT--T---------TTA-AAT------CTACTGTATGTTCATTCCAT-C----------G--T-AT--------
gi|3 : aAGGAGTAACGGACCTT-GGTGAGTT--CC-CC-----CACCTA-TTTG--A--TTT--TT----------TTTT-------A-T-------------------------------AT------AT-A----TATTCAATCCAT-C----------G--T-AT--------A---T---AAC----------C-A---AAA---C---AAGTCACA-----AA-----C------ATAGGTTAGATGCGTTTAATTTC---AAAGCACAC-CCCACATACCACA-AA--C---TGTCTTCAAACACCCATTGTGCAAAAACTATAA----CG--AATATTTTTATAACGTATATGGCATACAC--A--GAAAGCTAGA-GGAGG-TAT-ACGTCTCAAA-ATAAGTCCAACAACAGAAATCTTGAGCCAGTCGTTCCGG--ATTAA----GAC-CCTT--TCAAATC---GTCCAT---TTAGGGACTAAAAAGTTTAGT-----C-GT---AT-ATAAAATGGC-ACAT-----------------TTACAAGACTAAAACGGCTCAACACAACTGCAG--TCTGGTATGGCAACATGTTTCAAGGAAAGTCa
gi|1 : AGGAGTAACGAACCAC-G---------CC-C--------TCTGATTTC--T--TTT--TT----------TTTT-------A-T--TC---TT-TTT-------------TCATAATTGCTTTCT-A----TGTGCAATCCAT-C----------G--T-AT--------A---T---AATATACT---AATTA---AAC---AT--AATTAACA-----AACATTAG------TTGAGTAAAG-ACCGTTTACTT----------------CACATACC-CCAAA--C---TACCGTTAGACACCTGCAGTGCAAAATGTATAA----CG--AATATTCTTATATGGCA--T-------AC--ACTAAAAGCT----AGAGGATATTACGCGACAAA-ATAAGATAAACGTC------ATTGAGCCAGCCGT--ATTGGAACAA----AAT-CCTT--CAAAATG---GTTCAT---TTAGGGGATAAA-ACGTTG-T-----C-GT---AA-ATAAAGTGG---CACATT--T-TAACGGTTTAGAACAAGACTAAAACGACTCAACACAACTATAG--CCTGGTATAGCCGAATGTTTCAAaatctttcacgatcacttacttatgttaatatcatctaaaacagctaatgagatcaattttcta
gi|6 : gacGATTAATGGACTTT-GGTTGGTCACTC-CT-----TACC-ACCCCC--A--TTT--TT----------TTTTTTA----A-T--T----TT-TTTTTTA---------TCA-AAT------CT-A----TGTTCAATCCAT-CCAAAATACCCA--TTAT--------GAATT---AACA-------AAA-A---AAATAAA---GAGTGAGA-----AA-----CATATATTTGAGTAAAG-GCCTTTCACTTCAACGAAG----G-CTCATATACT-CC-AA--C---TGTCTTTAGACACCCGCTGTGCAAAAACTATagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacatttttgaaaaactaagaaatcaaaggtggtggggtgactaaccaaggtccgttacttctgtctatga
gi|8 : GTATTGGCCCTTCGGTTAGTA--CC-C----------CGCTC-C--G--TTT--TT----------CCCC-------AATAGT----TT-TTTC--G---------TCA-AAT------CT-A----TGTTCAATCCATCC----------A--A-AT------------T---AACACTTCTATAAT-A---CAA---A---AGGC-ACA-----AACGTATG------TTGTGGAAAG-GCTTTTTACTTC---AAGGAATGGTCA-ATATACC-CC-ACAAC---TGTCTTCAAGCACCCGC------AAATCTATAAG---CG--AATATTTTTATGCAACA--T-------ACAAA--GAAAGCTAGA-GGAGG-TATTACGAGACAAATATAAGCCCAATGTCAGAAATAGTAAGCCAGCCGTTCTGG--AA-AA----GGC-CCTTACTCAAtaatttataattaaaaaaaatgtttagtcgaaaataaagtggcacatttcaacgggttaatacaggactaaaacggctcgaaacaactgtcgcctctgatgataacacgttttaaggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|10 : gcaaagGCAAGGGGCATT-GGCTAGTT--CC-CT-----T--CTGAT-----A--ATA--AG----------TTTC-------G-T--T----TT-------G---------TCA-AAT------AT-A----TGTTGAATCCAT-CCAAAATACCTACTT-AT--------G---T---AACT-------ACA-A---ACA---A---GAGTGACATATATAA-----G------TTGAGTAAGG-GCCTTTT
gi|12 : tgcacagA--A---------TTA-AAT------CA-A----TGTTCAATCCAT-C----------A--T-AT--------A---T---AACT-------A---A---AAA---A---AAGTCACA-----A
gi|13 : caggcaggagtaacgccccttgattagcccctatacttcaggtataaatataaaaaa----TGTTCAATCCAT-C----------G--T-AT--------A---T---AACA-------AAT-A---AAAT--ACACAAGTAACACACATAA-----G------TTGAGTAAAG-GCCTTTTACTTC----AAGCAAAA-TAC
gi|2 : ta-----AA-----G------TTGAATTAAA-AAATTTTACTTC---AAGGAACGG-TCCGCATACCTCC-AA--C---TGTCTTCAAACA--AACT-T-CAATAACTAAAA----TA--AATATTCTTATACGGCATGC-------AC--A--GAAATCT-TGAGGATG-TATTACGTGACAAA-CTAAGTCCAACGTCTGATATATCGAGCCAGTCGTTTCAG--AATAATGATAATATCTT--TCAAATTTCAAATCGCCCATTAAGGGCTACAATGGTTATTACAACT-GT---GACATTGAATGGCAACATGTT--T-CAAcgcaagttttgttatatac
gi|5 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccGTGACAAA-ATAAGCCCAACAACAAAAATATTGAGCCTGCCGTTCCGG--AACAA----GAC-CCTT--TTAAATC---GCCCAT---ATAGGGGCTGAAAAGTTTAGT-----C-AT---AA-ATAAAGTG---ACACATTTGT-TAACGGGTAATTGCAAGACTAAGGCGGCTCAACACAATTATAG--CCTGGT---ACGACATGTTTTAAAGAAAGTCagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|6 : acatgcaggagtaacggcccttggtgagttcccccaccccatcggatttttttaacctttatttcattttttccccaaatctatgttcaatccatcgtatatatcgaacaaaaagtgacaaacataagttgagtaaaggcattttcatgaaTAAAAAAAATGTT-----TAGTCGAAA-ATAAAGTGGC-ACAT--T--T-CAACGGGTTAATACAGGACTAAAACGGCTCGAAACAACTGTCGCCTCTG--ATGATAACACGTTTTAAaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|9 : gattaatggactttggttggtcactccttaccacccccatttttttttttaattttttttttatcaaatctatgttcaatccatccaaaatacccattatgaattaacaaaaaaaataaagagtgagaaacatatatttgagtaaaggcctttcacttcaacgaaggctcatatactccaactgtctttagacacccgctgtgcaaaaactattaatttataatCACATT--TATAATCGGTTAATACAGGAGTAAAACGGCTCTAAACAACTGTAG--CCTGTAATGATAACACGTTTTAAggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|2 : tggATTAAGGG-CTACAATGGTT-ATTACAACTGTGA--CATTGAATGGCAACATGTTTCAAAGAAAGTCggtaagtaaacatcaaattaattatttcgtgctaactaacttcattatcacctaaaacagctgatcagagcaattttctacttcgcaacttgtttgcagaacgatgtcagccatgttccagccgataaaaagattgatgtatcaaacgtgctgattggtcctaaataacacccccaagataccccaaacagcgccct
Alignments
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222222222 11111111111 2222222222222222 1111111 3333333333333333333 1 22222222 2222222 222 11111 33 1111 2222222 11111 33
lowQualScore : 2 33 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 999999 77777 77777777777777777 88888 55555555555 99999 3333333333333333 5555555 3 8888888888888888888 4 2 1 3 0 5 77 5 1 1 5 1 00000000 1111111 6 888 88888 00 5 1 5 2 2 5 2222 1111111 99 2 0 6 1 1 66666 6 5 33 5 1 3 0 2 0 2 2
lowQualScore : . .. . ............................................................................................... . ...... ..... ................. ..... ........... ..... ................ ....... . ................... . . . . . . .. . . . . . ........ ....... . ... ..... .. . . . . . . .... ....... .. . . . . . ..... . . .. . . . . . . . .
lowQualScore : 7 77 9 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 666666 77777 00000000000000000 33333 88888888888 11111 7777777777777777 4444444 2 3333333333333333333 0 1 3 0 4 7 99 7 4 7 1 0 77777777 7777777 7 888 55555 33 2 0 7 1 3 7 1111 7777777 22 2 8 7 0 0 77777 7 7 33 7 0 3 7 2 7 5 2
consensus : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTT--TTT-----------T----------TC----------A----TT-TT-TTT---N----------TCA-AAT------CTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGT-----CGTAA-ATAAAGTGGC-ACA--TTT-TAACGGGTTANTACAAGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGACAACACGTTTCAAGGNAAGTC
Reference ( family-3377 ) : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTT--TTT-----------T----------TC----------A----TT-TT-TTT---A----------TCA-AAT------CTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTANGAGGAGGTATTACGNGACAAA-ATAAGCCCAACGTCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGTCCATTTAGGGGCTAAAAA-GNTTANT-----CGTAA-ATAAAGTGGC-ACACGTTT-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAAGAAAGTC
gi|1 : GACAGGAGTAACGAACCAC-G---------CC-CT--------C----TGATTTC---TTTT--TTT-----------T----------TT----------A----TT-CT-TTT---T----------TCATAATTGCTTTCTA-----TGTGCAATCCATC----G------------TA-----T-----------AT-----AATATACT---AATTA---AAC---AT--AATTAACA-----AACATTAG------TTGAGT-AAAGACCGTTTACTTCA------------CATACC-C--C-AAACTACCGTTAGACACCTGCAGTGCAAAATGTATAA-CG-----AATATTCTTATA-------TGGC-AT--AC--ACTAAAAGCTA-GAGGA--TATTACGCGACAAA-ATAAGATAAACGTCA------TTGAGCCAGCCGTATTGGAACAA-AAT----CC-------TT--CAAAATGGTTCATTTAGGGGATAAAAC-GTT--GT-----CGTAA-ATAAAGTGGC-ACA--TTT-TAACGGTTTAGAACAAGACTAAAACGACTCAACACAACTATAGCCTGGTATAGCCGAATGTTTCAAAGAAATTC
gi|1 : AGACAGAAGTAACGGACCTT-GGTTAGTC--AC-CC-----CACC------ACC------TTTGATTT-----------C----------TT----------A----GT-TT-TTC---A-----------AA-AAT------GTA-----Taacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacatttttgaaaaactaagaaatcaaaggtggtggggtgactaaccaaggtccgttacttctgtctatga
gi|10 : gacaggagtaacgaaccacgccctctgatttcttttttttttattcttttttcataattgctttctatgtgcaatccatcgtatataatatactaattaaacataattaacaaacattagttgagtaaagaccgtttacttcacataccccaaactaccgttagacacctgcagtgcaaaatgtataacgaatattcttatatggcatacactaaaagctagaggatattacgcgacaaaataagataaacgtcattgagccagccgtattggaacaaaatccttcaaaatggttcatttaggggataaaacgttgtcgtaaataaagtggcacattttaacggtttagaacaagactaaaacgactcaacacaactatagcctggtatagccgaatgtttcaaagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataCAGGCAAG------GGGCATT-GGCTAGTT--CC-CT-----T--C----TGAT------AATA--AGT-----------T----------TC----------G----TT-TT-------G----------TCA-AAT------ATA-----TGTTGAATCCATC----CAAAATACCTACTTA-----T-----------GT-----AACT-------ACA-A---ACA---A---GAGTGACATATATAA-----G------TTGAGT-AAGGGCCTTTTatga
gi|11 : tgcaCAGGCAGAACTAACCGAAATT-GATTAGTC--CC-CAAAATCTACA----CCACCTCTA-ATTT--TTG-----------T----------TCTCAATGAATTA----TTGTT-TTT---AATTTTCTGCTTCA-AAT------CTT-----CGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------
gi|12 : CAGGCAGGAGTAACGCCCCTT-GATTAGCC--CC-TA-----TAC
gi|12 : ---A----------TTA-AAT------CAA-----TGTTCAATCCATC----A------------TA-----T-----------AT-----AACT-------A---A---AAA---A---AAGTCACA-----Attcaggtataaatataaaaaaaattaaatcaatgttcaatccatcatatataactaaaaaaaagtcacaa
gi|13 : caggcaggagtaacgccccttgattagcccctatacttcaggtataaatataaaaaaaTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAAT--ACACAAGTAACACACATAA-----G------TTGAGT-AAAGGCCTTTTACTTCAA
gi|14 : GCAGAAATAATGGACATT-GGTAAGTC--CCACA-----CACC----C--TCTG---ATTT--TTT-----------T----------TC----------AAT--TT-TT-CTT---T----------TTA-AAT------CTACTGTATGTTCATTCCATC----G------------TA-----T-----------Agcaaaataccgcaagttttgttatatac
gi|15 : aCAAGCAGGAGTAACGGACTTT-GGTCATTC--CC-C
gi|16 : acaCAGGCAGGAGCAACGGACCTT-GGTTAGTC--catccctc
gi|2 : caCAAACAGGAATAACGGACCTT-AGTCAGTC--CC-CA------ACC----CACTAAC---CTTT--TAT-----------A----------TC----------A----TT-TTATTT---T----------TCC-AA
gi|2 : taaatta-----AA-----G------TTGAAT-TAAAAAATTTTACTTCAAGGAACGGTCCGCATACCTC--C-AA-CTGTCTTCAAACAAAC----TTCAATAACTAAAA-TA-----AATATTCTTATA-------CGGC-ATGCAC--A--GAAATCT-TGAGGATGTATTACGTGACAAA-CTAAGTCCAACGTCTGATATATCGAGCCAGTCGTTTCAGAATAATGATAATATCTTTCAAATT--TCAAATCGCCCA-TTAAGGGCTACAAT-GGTTATTACAACTGTGACATTGAATGGCAACATGTTT-CAAgttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccattaagggctacaatggttattacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|3 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccAGGAGTAACGGACCTT-GGTGAGTT--CC-CC-----CACC----T-ATTTG---ATTT--TTT-----------T----------TT----------A----T---------------------------AT------ATA-----TATTCAATCCATC----G------------TA-----T-----------AT-----AAC----------C-A---AAA---C---AAGTCACA-----AA-----C------ATAGGTTAGATGCGTTTAATTTCAAAGCACACCCCACATACC-A--C-AAACTGTCTTCAAACACCCATTGTGCAAAAACTATAA-CG-----AATATTTTTATAACGTATATGGC-ATACAC--A--GAAAGCTA-GAGGAGGTAT-ACGTCTCAAA-ATAAGTCCAACAACAGAAATCTTGAGCCAGTCGTTCCGGATTAA-GAC----CC-------TT--TCAAATCGTCCATTTAGGGACTAAAAA-GTTTAGT-----CGTAT-ATAAAATGGC-ACA--TT-------------TACAAGACTAAAACGGCTCAACACAACTGCAGTCTGGTATGGCAACATGTTTCAAGGAAAGTCagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|4 : CAGGTAGGAGTAACGGACCTT-GGTTAGTC--CC-CA-----TACC----CAATCTC---ATTT--TTT-----------T----------TC----------A----TT-TT-TTT---AA---------TCA-AAT------CTC-----TGTTCAATCCATC----A------------TA-----T-----------GT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAAGCCTTTTACTTCGAAGCACAGCACACATACC-C--T-AT-CTGTCTTCAGACATCCACTGTGCAAAAACTATAA-CA-----AATATTCTTGTA-------CAGTAAG-TAC--A--GACAGCTGTG-GGAGGTATTGCGTGACAAA-ATAAGCCCAACAACAGAAATATTGAGTCGACCGTTCCTTAATAA-AAC----CC-------TT--TCAAATTGATCATTTAGGGGCTAAAGA-GGCTATT-----TGTAA-ATAAAGTGGC-ACACACTT-TAACGGATTATTAAAAGACTGAAAAGGCTCAACACAACTGTAGTCTGGTATGACAACATGTTTCAACAGGAGTCaatctttcacgatcacttacttatgttaatatcatctaaaacagctaatgagatcaattttcta
gi|5 : CATGCAGGAGTAACGGCCCTT-GGTGAGTT--CC-CC-----CACC----CCATCGG---ATTT--TTT-----------TAACCTTTATTTC----------A----TT-TT-TTC---C----------CCA-AAT------CTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----ATCG-------AAC------AA---A---AAGTGACAAACATAA-----G------TTGAGT-AAAGGCATTTTtgtaaacttgaataaa
gi|5 : aGTGACAAA-ATAAGCCCAACAACAAAAATATTGAGCCTGCCGTTCCGGAACAA-GAC----CC-------TT--TTAAATCGCCCATATAGGGGCTGAAAA-GTTTAGT-----CATAA-ATAAAGTGAC-ACATTTGT-TAACGGGTAATTGCAAGACTAAGGCGGCTCAACACAATTATAGCCTGGTA---CGACATGTTTTAAAGAAAGTCcatgaagtgacaaaataagcccaacaacaaaaatattgagcctgccgttccggaacaagacccttttaaatcgcccatataggggctgaaaagtttagtcataaataaagtgacacatttgttaacgggtaattgcaagactaaggcggctcaacacaattatagcctggtacgacatgttttaaagaaagtcaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : acatgcaggagtaacggcccttggtgagttcccccaccccatcggatttttttaacctttatttcattttttccccaaatctatgttcaatccatcgtatatatcgaacaaaaagtgacaaacataagttgagtaaaggcattttcatgaaGATTAATGGACTTT-GGTTGGTCACTC-CT-----TACCACCCCCATTT-----TTT--TTT-----------T----------TA----------A----TT-TT-TTTTTTA----------TCA-AAT------CTA-----TGTTCAATCCATCCAAAA------------TACCCATT-----------ATGAATTAACA-------AAA-A---AAATAAA---GAGTGAGA-----AA-----CATATATTTGAGT-AAAGGCCTTTCACTTCAACGAA-GGCTCATATACT-C--C-AA-CTGTCTTTAGACACCCGCTGTGCAAAAACTATaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : AAAAATGTTTAGT-----CGAAA-ATAAAGTGGC-ACA--TTT-CAACGGGTTAATACAGGACTAAAACGGCTCGAAACAACTGTCGCCTCTGATGATAACACGTTTTAAGGTAAGTCtaatttataattaaaaaaaatgtttagtcgaaaataaagtggcacatttcaacgggttaatacaggactaaaacggctcgaaacaactgtcgcctctgatgataacacgttttaaggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|7 : gattaatggactttggttggtcactccttaccacccccatttttttttttaattttttttttatcaaatctatgttcaatccatccaaaatacccattatgaattaacaaaaaaaataaagagtgagaaacatatatttgagtaaaggcctttcacttcaacgaaggctcatatactccaactgtctttagacacccgctgtgcaaaaactattaatttataattaaaAGGCAGGAATATCGGACCTT-GTTTAGTC------T-----TAAA----CTGCCTCTGAATTT--TTTATCTGTATACTT----------TCGAAAAC----A----TT-TC-TTT--------------TCA-AAT------CCA-----TATATAACCCATC----C------------TA-----TCCACTTGTGTTAC-----AACA-------AAT-ACATAAA---A---AAGTGACA-----AA-----C------ATAAGT-TAAC-CCCATTAATTCAAAGAACGGTCCACATACC-C--CCGA-GTGTCTGCAGATATCCGCTGCGCAAAATCTATAAATGCTAGTAGTATTCTTATA-------CGGC-A--TACAAA--GAAAGAT-TGAGGAAATATTCAGGGAAAGA-ATAAGCCAAACGTCAGAAATATAAAGCCAGTCGCTCCGGAGTAA-TAC----aacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|8 : caaGCAAAGGTATTGGCCCTTCGGTTAGTA--CC-C--------------CGCTC-C---GTTT--TTC-----------C----------CC----------AATAGTT-TT-TTC---G----------TCA-AAT------CTA-----TGTTCAATCCATCC---A------------AA-----T------------T-----AACACTTCTATAAT-A---CAA---A---AGGC-ACA-----AACGTATG------TTGTGG-AAAGGCTTTTTACTTCAAGGAATGGTCAATATACC-CCAC-AA-CTGTCTTCAAGCACCCGC------AAATCTATAAGCG-----AATATTTTTATG-------CAAC-A--TACAAA--GAAAGCTA-GAGGAGGTATTACGAGACAAATATAAGCCCAATGTCAGAAATAGTAAGCCAGCCGTTCTGGAA-AA-GGC----CC-------TTACTCAA
gi|9 : TGGC-ACA--TTTATAATCGGTTAATACAGGAGTAAAACGGCTCTAAACAACTGTAGCCTGTAATGATAACACGTTTTAAGGTAAGT
Alignments
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 22222222222222222 11111111111 2222222222222222 1111111 3333333333333333333 1 22222222 2222222 222 11111 22 1111 2222222 1111
lowQualScore : 2 33 2 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99999999999 3 000000 88888 77777777777777777 88888 55555555555 99999 3333333333333333 5555555 3 8888888888888888888 4 2 1 3 0 5 77 5 1 1 5 1 00000000 1111111 6 888 88888 55 5 0 5 1 2 5 2222 1111111 99 1 0 6 99 5555 1 3 0 1 1 0 1
lowQualScore : . .. . ....................................................................................... ........... . ...... ..... ................. ..... ........... ..... ................ ....... . ................... . . . . . . .. . . . . . ........ ....... . ... ..... .. . . . . . . .... ....... .. . . . .. .... . . . . . . .
lowQualScore : 7 77 9 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 55555555555 3 555555 33333 00000000000000000 33333 88888888888 11111 7777777777777777 4444444 2 3333333333333333333 0 1 3 0 4 7 99 7 4 7 1 0 77777777 7777777 7 888 55555 33 2 3 7 0 3 7 1111 7777777 22 4 8 7 22 0000 0 0 7 9 4 4 0
consensus : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC-----CGATCTC---ATTTT--------------------TTT----------TC---A----T-------------TTT-TT-TT-T---CA-AAT------CTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
Reference ( family-3377 ) : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC-----CGATCTC---ATTTT--------------------TTT----------TC---A----T-------------TTT-TT-TN-T---CA-AAT------CTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAAGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGACAACACGTTTCAAGGNAAGTC
gi|1 : GACAGGAGTAACGAACCAC-G---------CC-CT--------C-----TGATTTC---TTTTT--------------------TTT----------TT---A----T-------------TCT-TT-TT-T---CATAATTGCTTTCTA-----TGTGCAATCCATC----G------------TA-----T-----------AT-----AATATACT---AATTA---AAC---AT--AATTAACA-----AACATTAG------TTGAGT-AAAGACCGTTTACTTCA------------CATACC-C--C-AAACTACCGTTAGACACCTGCAGTGCAAAATGTATAA-CG-----AATATTCTTATA-------TGGC-AT--AC--ACTAAAAGCTA-GAGGA--TATTACGCGACAAA-ATAAGATAAACGTCA------TTGAGCCAGCCGTATTGGAACAA-AAT----CC-------TT--CAAAATGGTTCATTTAGGGGATAAAAC-GTT--GTCGTAAATAAAGTGG--CACATT--T-TAACGGTTTAGAACAAGACTAAAACGACTCAACACAACTATAGCCTGGTATAGCCGAATGTTTCAAAGAAATTC
gi|1 : AGACAGAAGTAACGGACCTT-GGTTAGTC--AC-CC-----CACCACCTTTGATTTC---TTAGT--------------------TTT----------TC---A----aacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacatttttgaaaaactaagaaatcaaaggtggtggggtgactaaccaaggtccgttacttctgtctatga
gi|10 : gacaggagtaacgaaccacgccctctgatttcttttttttttattcttttttcataattgctttctatgtgcaatccatcgtatataatatactaattaaacataattaacaaacattagttgagtaaagaccgtttacttcacataccccaaactaccgttagacacctgcagtgcaaaatgtataacgaatattcttatatggcatacactaaaagctagaggatattacgcgacaaaataagataaacgtcattgagccagccgtattggaacaaaatccttcaaaatggttcatttaggggataaaacgttgtcgtaaataaagtggcacattttaacggtttagaacaagactaaaacgactcaacacaactatagcctggtatagccgaatgtttcaaagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacattttCAGGCAAG------GGGCATT-GGCTAGTT--CC-CT-----T--C-----TGAT------AATAA--------------------GTT----------TC---G----T-------------TTT-----G-T---CA-AAT------ATA-----TGTTGAATCCATC----CAAAATACCTACTTA-----T-----------GT-----AACT-------ACA-A---ACA---A---GAGTGACATATATAA-----G------TTGAGT-AAGGGCCTTTTatga
gi|11 : tgcaCAGGCAGAACTAACCGAAATT-GATTAGTC--CC-CAAAATCTACA-----CCACCTCTA-ATTTTTGTTCTCAATGAATTATTGTTTT----------TA---A----T-------------TTT-CTGCT-T---CA-AAT------CTT-----CGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------
gi|12 : CAGGCAGGAGTAACGCCCCTT-GATTAGCC--CC-TA-----TAC
gi|12 : -T---TA-AAT------CAA-----TGTTCAATCCATC----A------------TA-----T-----------AT-----AACT-------A---A---AAA---A---AAGTCACA-----Attcaggtataaatataaaaaaaattaaatcaatgttcaatccatcatatataactaaaaaaaagtcacaa
gi|13 : caggcaggagtaacgccccttgattagcccctatacttcaggtataaatataaaaaaaaTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAAT--ACACAAGTAACACACATAA-----G------TTGAGT-AAAGGCCTTTTACTTCAA
gi|14 : GCAGAAATAATGGACATT-GGTAAGTC--CCACA-----CACC-----C--TCTG---ATTTT--------------------TTT----------TC---AAT--T-------------TTT-CT-TT-T---TA-AAT------CTACTGTATGTTCATTCCATC----G------------TA-----T-----------Agcaaaataccgcaagttttgttatatac
gi|15 : aCAAGCAGGAGTAACGGACTTT-GGTCATTC--CC-C
gi|16 : acaCAGGCAGGAGCAACGGACCTT-GGTTAGTC--catccctc
gi|2 : caCAAACAGGAATAACGGACCTT-AGTCAGTC--CC-CA------ACC-----CACTAAC---CTTTT--------------------ATA----------TC---A----T-------------TTTATT-TT-T---CC-AA
gi|2 : taaatta-----AA-----G------TTGAAT-TAAAAAATTTTACTTCAAGGAACGGTCCGCATACCTC--C-AA-CTGTCTTCAAACAAAC----TTCAATAACTAAAA-TA-----AATATTCTTATA-------CGGC-ATGCAC--A--GAAATCT-TGAGGATGTATTACGTGACAAA-CTAAGTCCAACGTCTGATATATCGAGCCAGTCGTTTCAGAATAATGATAATATCTTTCAAATT--TCAAATCGCCCA-TTAAGGGCTACAAT-GGTTAgttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccattaagggctacaatggttattacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|2 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccATTA-AGGGCTACAATGGTT-ATTACAACTGTGACATTGAATGGCAACATGTTTCAAAGAAAGTCttacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|3 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccaagttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccAGGAGTAACGGACCTT-GGTGAGTT--CC-CC-----CACC-----T-ATTTG---ATTTT--------------------TTT----------TT---A----T-------------------------------AT------ATA-----TATTCAATCCATC----G------------TA-----T-----------AT-----AAC----------C-A---AAA---C---AAGTCACA-----AA-----C------ATAGGTTAGATGCGTTTAATTTCAAAGCACACCCCACATACC-A--C-AAACTGTCTTCAAACACCCATTGTGCAAAAACTATAA-CG-----AATATTTTTATAACGTATATGGC-ATACAC--A--GAAAGCTA-GAGGAGGTAT-ACGTCTCAAA-ATAAGTCCAACAACAGAAATCTTGAGCCAGTCGTTCCGGATTAA-GAC----CC-------TT--TCAAATCGTCCATTTAGGGACTAAAAA-GTTTAGTCGTATATAAAATGG--CACATT---------------TACAAGACTAAAACGGCTCAACACAACTGCAGTCTGGTATGGCAACATGTTTCAAGGAAAGTCaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|4 : CAGGTAGGAGTAACGGACCTT-GGTTAGTC--CC-CA-----TACC-----CAATCTC---ATTTT--------------------TTT----------TC---A----T-------------TTT-TT-TAAT---CA-AAT------CTC-----TGTTCAATCCATC----A------------TA-----T-----------GT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAAGCCTTTTACTTCGAAGCACAGCACACATACC-C--T-AT-CTGTCTTCAGACATCCACTGTGCAAAAACTATAA-CA-----AATATTCTTGTA-------CAGTAAG-TAC--A--GACAGCTGTG-GGAGGTATTGCGTGACAAA-ATAAGCCCAACAACAGAAATATTGAGTCGACCGTTCCTTAATAA-AAC----CC-------TT--TCAAATTGATCATTTAGGGGCTAAAGA-GGCTATTTGTAAATAAAGTGGCACACACT--T-TAACGGATTATTAAAAGACTGAAAAGGCTCAACACAACTGTAGTCTGGTATGACAACATGTTTCAACAGGAGTCaatctttcacgatcacttacttatgttaatatcatctaaaacagctaatgagatcaattttcta
gi|5 : CATGCAGGAGTAACGGCCCTT-GGTGAGTT--CC-CC-----CACC-----CCATCGG---ATTTT--------------------TTTAACCTTTATTTC---A----T-------------TTT-TT-CC-C---CA-AAT------CTA-----TGTTCAATCCATC----G------------TA-----T-----------AT-----ATCG-------AAC------AA---A---AAGTGACAAACATAA-----G------TTGAGT-AAAGGCATTTTtgtaaacttgaataaa
gi|5 : aGTGACAAA-ATAAGCCCAACAACAAAAATATTGAGCCTGCCGTTCCGGAACAA-GAC----CC-------TT--TTAAATCGCCCATATAGGGGCTGAAAA-GTTTAGTCATAAATAAAGTGA--CACATTTGT-TAACGGGTAATTGCAAGACTAAGGCGGCTCAACACAATTATAGCCTGGT---ACGACATGTTTTAAAGAAAGTCcatgaagtgacaaaataagcccaacaacaaaaatattgagcctgccgttccggaacaagacccttttaaatcgcccatataggggctgaaaagtttagtcataaataaagtgacacatttgttaacgggtaattgcaagactaaggcggctcaacacaattatagcctggtacgacatgttttaaagaaagtcaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : acatgcaggagtaacggcccttggtgagttcccccaccccatcggatttttttaacctttatttcattttttccccaaatctatgttcaatccatcgtatatatcgaacaaaaagtgacaaacataagttgagtaaaggcattttcatgaaGATTAATGGACTTT-GGTTGGTCACTC-CT-----TACCACCC-CCATTT-----TTTT--------------------TTT----------TA---A----T-------------TTT-TT-TT-TTATCA-AAT------CTA-----TGTTCAATCCATCCAAAA------------TACCCATT-----------ATGAATTAACA-------AAA-A---AAATAAA---GAGTGAGA-----AA-----CATATATTTGAGT-AAAGGCCTTTCACTTCAACGAA-GGCTCATATACT-C--C-AA-CTGTCTTTAGACACCCGCTGTGCAAAAACTATaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : AAAAATGTTTAGTCGAAAATAAAGTGG--CACATT--T-CAACGGGTTAATACAGGACTAAAACGGCTCGAAACAACTGTCGCCTCTGATGATAACACGTTTTAAGGTAAGTCtaatttataattaaaaaaaatgtttagtcgaaaataaagtggcacatttcaacgggttaatacaggactaaaacggctcgaaacaactgtcgcctctgatgataacacgttttaaggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|7 : gattaatggactttggttggtcactccttaccacccccatttttttttttaattttttttttatcaaatctatgttcaatccatccaaaatacccattatgaattaacaaaaaaaataaagagtgagaaacatatatttgagtaaaggcctttcacttcaacgaaggctcatatactccaactgtctttagacacccgctgtgcaaaaactattaatttataattaaaAGGCAGGAATATCGGACCTT-GTTTAGTC------T-----TAAA-----CTGCCTCTGAATTTT--------------------TTA----------TCTGTA----TACTTTCGAAAACATTT-CT-TT-T---CA-AAT------CCA-----TATATAACCCATC----C------------TA-----TCCACTTGTGTTAC-----AACA-------AAT-ACATAAA---A---AAGTGACA-----AA-----C------ATAAGT-TAAC-CCCATTAATTCAAAGAACGGTCCACATACC-C--CCGA-GTGTCTGCAGATATCCGCTGCGCAAAATCTATAAATGCTAGTAGTATTCTTATA-------CGGC-A--TACAAA--GAAAGAT-TGAGGAAATATTCAGGGAAAGA-ATAAGCCAAACGTCAGAAATATAAAGCCAGTCGCTCCGGAGTAA-TAC----aacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|8 : caaGCAAAGGTATTGGCCCTTCGGTTAGTA--CC-C---------------CGCTC-C---GTTTT--------------------TCC----------CC---AATAGT-------------TTT-TT-CG-T---CA-AAT------CTA-----TGTTCAATCCATCC---A------------AA-----T------------T-----AACACTTCTATAAT-A---CAA---A---AGGC-ACA-----AACGTATG------TTGTGG-AAAGGCTTTTTACTTCAAGGAATGGTCAATATACC-CCAC-AA-CTGTCTTCAAGCACCCGC------AAATCTATAAGCG-----AATATTTTTATG-------CAAC-A--TACAAA--GAAAGCTA-GAGGAGGTATTACGAGACAAATATAAGCCCAATGTCAGAAATAGTAAGCCAGCCGTTCTGGAA-AA-GGC----CC-------TTACTCAA
gi|9 : TGG--CACATT--TATAATCGGTTAATACAGGAGTAAAACGGCTCTAAACAACTGTAGCCTGTAATGATAACACGTTTTAAGGTAAGT
Alignments
lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111 22222222222222222 11111111111 2222222222222222 1111111 3333333333333333333 1 22222222 2222222 222 11111 22 1111 2222222 1111
lowQualScore : 2 33 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 444 88888888 3 333333333333 77777777777777777 88888 55555555555 99999 3333333333333333 5555555 3 8888888888888888888 4 2 1 3 0 5 77 5 1 1 5 1 00000000 1111111 6 888 88888 55 5 0 5 1 2 5 2222 1111111 99 1 0 6 99 5555 1 3 0 1 0 1 0 0
lowQualScore : . .. . ....................................................................................... ... ........ . ............ ................. ..... ........... ..... ................ ....... . ................... . . . . . . .. . . . . . ........ ....... . ... ..... .. . . . . . . .... ....... .. . . . .. .... . . . . . . . .
lowQualScore : 7 77 9 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 99999999 1 333333333333 00000000000000000 33333 88888888888 11111 7777777777777777 4444444 2 3333333333333333333 0 1 3 0 4 7 99 7 4 7 1 0 77777777 7777777 7 888 55555 33 2 3 7 0 3 7 1111 7777777 22 4 8 7 22 0000 0 0 7 9 4 4 4 6
consensus : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
Reference ( family-3377 ) : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
gi|1 : GACAGGAGTAACGAACCAC-G---------CC-CT--------C----TGATTTC---TTTTT--------------------T-TT----------TT---A----T-------------TCT-T-T-TT-T---CATAATTGCTTTC-----TATGTGCAATCCATC----G------------TA-----T-----------AT-----AATATACT---AATTA---AAC---AT--AATTAACA-----AACATTAG------TTGAGT-AAAGACCGTTTACTTCA------------CATACC-C--C-AAACTACCGTTAGACACCTGCAGTGCAAAATGTATAA-CG-----AATATTCTTATA-------TGGC-AT--AC--ACTAAAAGCTA-GAGGA--TATTACGCGACAAA-ATAAGATAAACGTCA------TTGAGCCAGCCGTATTGGAACAA-AAT----CC-------TT--CAAAATGGTTCATTTAGGGGATAAAAC-GTT--GTCGTAAATAAAGTGG--CACATT--T-TAACGGTTTAGAACAAGACTAAAACGACTCAACACAACTATAGCCTGGTATAGCCGAATGTTTCAAAGAAATTC
gi|1 : AGACAGAAGTAACGGACCTT-GGTTAGTC--AC-CC-----CACC------ACC------TTTG--------------------A-TT----------TC--------T-------------TAG-T-T-TT-T---CA-AAaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacatttttgaaaaactaagaaatcaaaggtggtggggtgactaaccaaggtccgttacttctgtctatga
gi|10 : gacaggagtaacgaaccacgccctctgatttcttttttttttattcttttttcataattgctttctatgtgcaatccatcgtatataatatactaattaaacataattaacaaacattagttgagtaaagaccgtttacttcacataccccaaactaccgttagacacctgcagtgcaaaatgtataacgaatattcttatatggcatacactaaaagctagaggatattacgcgacaaaataagataaacgtcattgagccagccgtattggaacaaaatccttcaaaatggttcatttaggggataaaacgttgtcgtaaataaagtggcacattttaacggtttagaacaagactaaaacgactcaacacaactatagcctggtatagccgaatgtttcaaagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacattCAGGCAAG------GGGCATT-GGCTAGTT--CC-CT-----T--C----TGAT------AATAA--------------------G-TT----------TC---G----T-------------TTT-G-T--------CA-AAT------A-----TATGTTGAATCCATC----CAAAATACCTACTTA-----T-----------GT-----AACT-------ACA-A---ACA---A---GAGTGACATATATAA-----G------TTGAGT-AAGGGCCTTTTatga
gi|11 : tgcaCAGGCAGAACTAACCGAAATT-GATTAGTC--CC-CAAAATCTACA----CCACCTCTA-ATTTTTGTTCTCAATGAATTATTGTT-TT----------TA---A----T-------------TTT-C-TGCT-T---CA-AAT------C-----TTCGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------
gi|12 : CAGGCAGGAGTAACGCCCCTT-GATTAGCC--CC-TA-----TAC
gi|12 : -T---TA-AAT------C-----AATGTTCAATCCATC----A------------TA-----T-----------AT-----AACT-------A---A---AAA---A---AAGTCACA-----Attcaggtataaatataaaaaaaattaaatcaatgttcaatccatcatatataactaaaaaaaagtcacaa
gi|13 : caggcaggagtaacgccccttgattagcccctatacttcaggtataaatataaaaaaaa-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAAT--ACACAAGTAACACACATAA-----G------TTGAGT-AAAGGCCTTTTACTTCAA
gi|14 : GCAGAAATAATGGACATT-GGTAAGTC--CCACA-----CACC----C--TCTG---ATTTT--------------------TTTT----------CA---A----T-------------TTT-TCT-TT-T---TA-AAT------CTACTGTATGTTCATTCCATC----G------------TA-----T-----------Agcaaaataccgcaagttttgttatatac
gi|15 : aCAAGCAGGAGTAACGGACTTT-GGTCATTC--CC-C
gi|16 : acaCAGGCAGGAGCAACGGACCTT-GGTTAGTC--catccctc
gi|2 : caCAAACAGGAATAACGGACCTT-AGTCAGTC--CC-CA------ACC----CACTAAC---CTTTT--------------------A-TA----------TC---A----T-------------TTTAT-T-TT-T---CC-AA
gi|2 : taaatta-----AA-----G------TTGAAT-TAAAAAATTTTACTTCAAGGAACGGTCCGCATACCTC--C-AA-CTGTCTTCAAACAAAC----TTCAATAACTAAAA-TA-----AATATTCTTATA-------CGGC-ATGCAC--A--GAAATCT-TGAGGATGTATTACGTGACAAA-CTAAGTCCAACGTCTGATATATCGAGCCAGTCGTTTCAGAATAATGATAATATCTTTCAAATT--TCAAATCGCCCA-TTAAGGGCTACAAT-GGTTAgttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccattaagggctacaatggttattacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|2 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccATTA-AGGGCTACAATGGTT-ATTACAACTGTGACATTGAATGGCAACATGTTTCAAAGAAAGTCttacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|3 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccaagttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccAGGAGTAACGGACCTT-GGTGAGTT--CC-CC-----CACC----T-ATTTG---ATTTT--------------------T-TT----------TT---A----T--------------------------------AT------A-----TATATTCAATCCATC----G------------TA-----T-----------AT-----AAC----------C-A---AAA---C---AAGTCACA-----AA-----C------ATAGGTTAGATGCGTTTAATTTCAAAGCACACCCCACATACC-A--C-AAACTGTCTTCAAACACCCATTGTGCAAAAACTATAA-CG-----AATATTTTTATAACGTATATGGC-ATACAC--A--GAAAGCTA-GAGGAGGTAT-ACGTCTCAAA-ATAAGTCCAACAACAGAAATCTTGAGCCAGTCGTTCCGGATTAA-GAC----CC-------TT--TCAAATCGTCCATTTAGGGACTAAAAA-GTTTAGTCGTATATAAAATGG--CACATT---------------TACAAGACTAAAACGGCTCAACACAACTGCAGTCTGGTATGGCAACATGTTTCAAGGAAAGTCaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|4 : CAGGTAGGAGTAACGGACCTT-GGTTAGTC--CC-CA-----TACC----CAATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TAAT---CA-AAT------C-----TCTGTTCAATCCATC----A------------TA-----T-----------GT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAAGCCTTTTACTTCGAAGCACAGCACACATACC-C--T-AT-CTGTCTTCAGACATCCACTGTGCAAAAACTATAA-CA-----AATATTCTTGTA-------CAGTAAG-TAC--A--GACAGCTGTG-GGAGGTATTGCGTGACAAA-ATAAGCCCAACAACAGAAATATTGAGTCGACCGTTCCTTAATAA-AAC----CC-------TT--TCAAATTGATCATTTAGGGGCTAAAGA-GGCTATTTGTAAATAAAGTGGCACACACT--T-TAACGGATTATTAAAAGACTGAAAAGGCTCAACACAACTGTAGTCTGGTATGACAACATGTTTCAACAGGAGTCaatctttcacgatcacttacttatgttaatatcatctaaaacagctaatgagatcaattttcta
gi|5 : CATGCAGGAGTAACGGCCCTT-GGTGAGTT--CC-CC-----CACC----CCATCGG---ATTTT--------------------T-TTAACCTTTATTTC---A----T-------------TTT-T-T-CC-C---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----ATCG-------AAC------AA---A---AAGTGACAAACATAA-----G------TTGAGT-AAAGGCATTTTtgtaaacttgaataaa
gi|5 : aGTGACAAA-ATAAGCCCAACAACAAAAATATTGAGCCTGCCGTTCCGGAACAA-GAC----CC-------TT--TTAAATCGCCCATATAGGGGCTGAAAA-GTTTAGTCATAAATAAAGTGA--CACATTTGT-TAACGGGTAATTGCAAGACTAAGGCGGCTCAACACAATTATAGCCTGGTA---CGACATGTTTTAAAGAAAGTCcatgaagtgacaaaataagcccaacaacaaaaatattgagcctgccgttccggaacaagacccttttaaatcgcccatataggggctgaaaagtttagtcataaataaagtgacacatttgttaacgggtaattgcaagactaaggcggctcaacacaattatagcctggtacgacatgttttaaagaaagtcaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : acatgcaggagtaacggcccttggtgagttcccccaccccatcggatttttttaacctttatttcattttttccccaaatctatgttcaatccatcgtatatatcgaacaaaaagtgacaaacataagttgagtaaaggcattttcatgaaGATTAATGGACTTT-GGTTGGTCACTC-CT-----TACCACCCCCATTT-----TTTT--------------------T-TT----------TA---A----T-------------TTT-T-T-TT-TTATCA-AAT------C-----TATGTTCAATCCATCCAAAA------------TACCCATT-----------ATGAATTAACA-------AAA-A---AAATAAA---GAGTGAGA-----AA-----CATATATTTGAGT-AAAGGCCTTTCACTTCAACGAA-GGCTCATATACT-C--C-AA-CTGTCTTTAGACACCCGCTGTGCAAAAACTATaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : AAAAATGTTTAGTCGAAAATAAAGTGG--CACATT--T-CAACGGGTTAATACAGGACTAAAACGGCTCGAAACAACTGTCGCCTCTGATGATAACACGTTTTAAGGTAAGTCtaatttataattaaaaaaaatgtttagtcgaaaataaagtggcacatttcaacgggttaatacaggactaaaacggctcgaaacaactgtcgcctctgatgataacacgttttaaggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|7 : gattaatggactttggttggtcactccttaccacccccatttttttttttaattttttttttatcaaatctatgttcaatccatccaaaatacccattatgaattaacaaaaaaaataaagagtgagaaacatatatttgagtaaaggcctttcacttcaacgaaggctcatatactccaactgtctttagacacccgctgtgcaaaaactattaatttataattaaaAGGCAGGAATATCGGACCTT-GTTTAGTC------T-----TAAA----CTGCCTCTGAATTTT--------------------T-TA----------TCTGTA----TACTTTCGAAAACATTT-C-T-TT-T---CA-AAT------C-----CATATATAACCCATC----C------------TA-----TCCACTTGTGTTAC-----AACA-------AAT-ACATAAA---A---AAGTGACA-----AA-----C------ATAAGT-TAAC-CCCATTAATTCAAAGAACGGTCCACATACC-C--CCGA-GTGTCTGCAGATATCCGCTGCGCAAAATCTATAAATGCTAGTAGTATTCTTATA-------CGGC-A--TACAAA--GAAAGAT-TGAGGAAATATTCAGGGAAAGA-ATAAGCCAAACGTCAGAAATATAAAGCCAGTCGCTCCGGAGTAA-TAC----aacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|8 : caaGCAAAGGTATTGGCCCTTCGGTTAGTA--CC-C--------------CGCTC-C---GTTTT--------------------T-CC----------CC---AATAGT-------------TTT-T-T-CG-T---CA-AAT------C-----TATGTTCAATCCATCC---A------------AA-----T------------T-----AACACTTCTATAAT-A---CAA---A---AGGC-ACA-----AACGTATG------TTGTGG-AAAGGCTTTTTACTTCAAGGAATGGTCAATATACC-CCAC-AA-CTGTCTTCAAGCACCCGC------AAATCTATAAGCG-----AATATTTTTATG-------CAAC-A--TACAAA--GAAAGCTA-GAGGAGGTATTACGAGACAAATATAAGCCCAATGTCAGAAATAGTAAGCCAGCCGTTCTGGAA-AA-GGC----CC-------TTACTCAA
gi|9 : TGG--CACATT--TATAATCGGTTAATACAGGAGTAAAACGGCTCTAAACAACTGTAGCCTGTAATGATAACACGTTTTAAGGTAAGT
Alignments
lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111 22222222222222222 11111111111 2222222222222222 1111111 3333333333333333333 1 22222222 2222222 222 11111 22 1111 2222222 1111
lowQualScore : 2 33 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 444 88888888 3 333333333333 77777777777777777 88888 55555555555 99999 3333333333333333 5555555 3 8888888888888888888 4 2 1 3 0 5 77 5 1 1 5 1 00000000 1111111 6 888 88888 55 5 0 5 1 2 5 2222 1111111 99 1 0 6 99 5555 1 3 0 1 0 1 0 0
lowQualScore : . .. . ....................................................................................... ... ........ . ............ ................. ..... ........... ..... ................ ....... . ................... . . . . . . .. . . . . . ........ ....... . ... ..... .. . . . . . . .... ....... .. . . . .. .... . . . . . . . .
lowQualScore : 7 77 9 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 99999999 1 333333333333 00000000000000000 33333 88888888888 11111 7777777777777777 4444444 2 3333333333333333333 0 1 3 0 4 7 99 7 4 7 1 0 77777777 7777777 7 888 55555 33 2 3 7 0 3 7 1111 7777777 22 4 8 7 22 0000 0 0 7 9 4 4 4 6
consensus : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
Reference ( family-3377 ) : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
gi|1 : GACAGGAGTAACGAACCAC-G---------CC-CT--------C----TGATTTC---TTTTT--------------------T-TT----------TT---A----T-------------TCT-T-T-TT-T---CATAATTGCTTTC-----TATGTGCAATCCATC----G------------TA-----T-----------AT-----AATATACT---AATTA---AAC---AT--AATTAACA-----AACATTAG------TTGAGT-AAAGACCGTTTACTTCA------------CATACC-C--C-AAACTACCGTTAGACACCTGCAGTGCAAAATGTATAA-CG-----AATATTCTTATA-------TGGC-AT--AC--ACTAAAAGCTA-GAGGA--TATTACGCGACAAA-ATAAGATAAACGTCA------TTGAGCCAGCCGTATTGGAACAA-AAT----CC-------TT--CAAAATGGTTCATTTAGGGGATAAAAC-GTT--GTCGTAAATAAAGTGG--CACATT--T-TAACGGTTTAGAACAAGACTAAAACGACTCAACACAACTATAGCCTGGTATAGCCGAATGTTTCAAAGAAATTC
gi|1 : AGACAGAAGTAACGGACCTT-GGTTAGTC--AC-CC-----CACC------ACC------TTTG--------------------A-TT----------TC--------T-------------TAG-T-T-TT-T---CA-AAaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacatttttgaaaaactaagaaatcaaaggtggtggggtgactaaccaaggtccgttacttctgtctatga
gi|10 : gacaggagtaacgaaccacgccctctgatttcttttttttttattcttttttcataattgctttctatgtgcaatccatcgtatataatatactaattaaacataattaacaaacattagttgagtaaagaccgtttacttcacataccccaaactaccgttagacacctgcagtgcaaaatgtataacgaatattcttatatggcatacactaaaagctagaggatattacgcgacaaaataagataaacgtcattgagccagccgtattggaacaaaatccttcaaaatggttcatttaggggataaaacgttgtcgtaaataaagtggcacattttaacggtttagaacaagactaaaacgactcaacacaactatagcctggtatagccgaatgtttcaaagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacattCAGGCAAG------GGGCATT-GGCTAGTT--CC-CT-----T--C----TGAT------AATAA--------------------G-TT----------TC---G----T-------------TTT-G-T--------CA-AAT------A-----TATGTTGAATCCATC----CAAAATACCTACTTA-----T-----------GT-----AACT-------ACA-A---ACA---A---GAGTGACATATATAA-----G------TTGAGT-AAGGGCCTTTTatga
gi|11 : tgcaCAGGCAGAACTAACCGAAATT-GATTAGTC--CC-CAAAATCTACA----CCACCTCTA-ATTTTTGTTCTCAATGAATTATTGTT-TT----------TA---A----T-------------TTT-C-TGCT-T---CA-AAT------C-----TTCGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------
gi|12 : CAGGCAGGAGTAACGCCCCTT-GATTAGCC--CC-TA-----TAC
gi|12 : -T---TA-AAT------C-----AATGTTCAATCCATC----A------------TA-----T-----------AT-----AACT-------A---A---AAA---A---AAGTCACA-----Attcaggtataaatataaaaaaaattaaatcaatgttcaatccatcatatataactaaaaaaaagtcacaa
gi|13 : caggcaggagtaacgccccttgattagcccctatacttcaggtataaatataaaaaaaa-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAAT--ACACAAGTAACACACATAA-----G------TTGAGT-AAAGGCCTTTTACTTCAA
gi|14 : GCAGAAATAATGGACATT-GGTAAGTC--CCACA-----CACC----C--TCTG---ATTTT--------------------TTTT----------CA---A----T-------------TTT-TCT-TT-T---TA-AAT------CTACTGTATGTTCATTCCATC----G------------TA-----T-----------Agcaaaataccgcaagttttgttatatac
gi|15 : aCAAGCAGGAGTAACGGACTTT-GGTCATTC--CC-C
gi|16 : acaCAGGCAGGAGCAACGGACCTT-GGTTAGTC--catccctc
gi|2 : caCAAACAGGAATAACGGACCTT-AGTCAGTC--CC-CA------ACC----CACTAAC---CTTTT--------------------A-TA----------TC---A----T-------------TTTAT-T-TT-T---CC-AA
gi|2 : taaatta-----AA-----G------TTGAAT-TAAAAAATTTTACTTCAAGGAACGGTCCGCATACCTC--C-AA-CTGTCTTCAAACAAAC----TTCAATAACTAAAA-TA-----AATATTCTTATA-------CGGC-ATGCAC--A--GAAATCT-TGAGGATGTATTACGTGACAAA-CTAAGTCCAACGTCTGATATATCGAGCCAGTCGTTTCAGAATAATGATAATATCTTTCAAATT--TCAAATCGCCCA-TTAAGGGCTACAAT-GGTTAgttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccattaagggctacaatggttattacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|2 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccATTA-AGGGCTACAATGGTT-ATTACAACTGTGACATTGAATGGCAACATGTTTCAAAGAAAGTCttacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|3 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccaagttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccAGGAGTAACGGACCTT-GGTGAGTT--CC-CC-----CACC----T-ATTTG---ATTTT--------------------T-TT----------TT---A----T--------------------------------AT------A-----TATATTCAATCCATC----G------------TA-----T-----------AT-----AAC----------C-A---AAA---C---AAGTCACA-----AA-----C------ATAGGTTAGATGCGTTTAATTTCAAAGCACACCCCACATACC-A--C-AAACTGTCTTCAAACACCCATTGTGCAAAAACTATAA-CG-----AATATTTTTATAACGTATATGGC-ATACAC--A--GAAAGCTA-GAGGAGGTAT-ACGTCTCAAA-ATAAGTCCAACAACAGAAATCTTGAGCCAGTCGTTCCGGATTAA-GAC----CC-------TT--TCAAATCGTCCATTTAGGGACTAAAAA-GTTTAGTCGTATATAAAATGG--CACATT---------------TACAAGACTAAAACGGCTCAACACAACTGCAGTCTGGTATGGCAACATGTTTCAAGGAAAGTCaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|4 : CAGGTAGGAGTAACGGACCTT-GGTTAGTC--CC-CA-----TACC----CAATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TAAT---CA-AAT------C-----TCTGTTCAATCCATC----A------------TA-----T-----------GT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAAGCCTTTTACTTCGAAGCACAGCACACATACC-C--T-AT-CTGTCTTCAGACATCCACTGTGCAAAAACTATAA-CA-----AATATTCTTGTA-------CAGTAAG-TAC--A--GACAGCTGTG-GGAGGTATTGCGTGACAAA-ATAAGCCCAACAACAGAAATATTGAGTCGACCGTTCCTTAATAA-AAC----CC-------TT--TCAAATTGATCATTTAGGGGCTAAAGA-GGCTATTTGTAAATAAAGTGGCACACACT--T-TAACGGATTATTAAAAGACTGAAAAGGCTCAACACAACTGTAGTCTGGTATGACAACATGTTTCAACAGGAGTCaatctttcacgatcacttacttatgttaatatcatctaaaacagctaatgagatcaattttcta
gi|5 : CATGCAGGAGTAACGGCCCTT-GGTGAGTT--CC-CC-----CACC----CCATCGG---ATTTT--------------------T-TTAACCTTTATTTC---A----T-------------TTT-T-T-CC-C---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----ATCG-------AAC------AA---A---AAGTGACAAACATAA-----G------TTGAGT-AAAGGCATTTTtgtaaacttgaataaa
gi|5 : aGTGACAAA-ATAAGCCCAACAACAAAAATATTGAGCCTGCCGTTCCGGAACAA-GAC----CC-------TT--TTAAATCGCCCATATAGGGGCTGAAAA-GTTTAGTCATAAATAAAGTGA--CACATTTGT-TAACGGGTAATTGCAAGACTAAGGCGGCTCAACACAATTATAGCCTGGTA---CGACATGTTTTAAAGAAAGTCcatgaagtgacaaaataagcccaacaacaaaaatattgagcctgccgttccggaacaagacccttttaaatcgcccatataggggctgaaaagtttagtcataaataaagtgacacatttgttaacgggtaattgcaagactaaggcggctcaacacaattatagcctggtacgacatgttttaaagaaagtcaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : acatgcaggagtaacggcccttggtgagttcccccaccccatcggatttttttaacctttatttcattttttccccaaatctatgttcaatccatcgtatatatcgaacaaaaagtgacaaacataagttgagtaaaggcattttcatgaaGATTAATGGACTTT-GGTTGGTCACTC-CT-----TACCACCCCCATTT-----TTTT--------------------T-TT----------TA---A----T-------------TTT-T-T-TT-TTATCA-AAT------C-----TATGTTCAATCCATCCAAAA------------TACCCATT-----------ATGAATTAACA-------AAA-A---AAATAAA---GAGTGAGA-----AA-----CATATATTTGAGT-AAAGGCCTTTCACTTCAACGAA-GGCTCATATACT-C--C-AA-CTGTCTTTAGACACCCGCTGTGCAAAAACTATaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : AAAAATGTTTAGTCGAAAATAAAGTGG--CACATT--T-CAACGGGTTAATACAGGACTAAAACGGCTCGAAACAACTGTCGCCTCTGATGATAACACGTTTTAAGGTAAGTCtaatttataattaaaaaaaatgtttagtcgaaaataaagtggcacatttcaacgggttaatacaggactaaaacggctcgaaacaactgtcgcctctgatgataacacgttttaaggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|7 : gattaatggactttggttggtcactccttaccacccccatttttttttttaattttttttttatcaaatctatgttcaatccatccaaaatacccattatgaattaacaaaaaaaataaagagtgagaaacatatatttgagtaaaggcctttcacttcaacgaaggctcatatactccaactgtctttagacacccgctgtgcaaaaactattaatttataattaaaAGGCAGGAATATCGGACCTT-GTTTAGTC------T-----TAAA----CTGCCTCTGAATTTT--------------------T-TA----------TCTGTA----TACTTTCGAAAACATTT-C-T-TT-T---CA-AAT------C-----CATATATAACCCATC----C------------TA-----TCCACTTGTGTTAC-----AACA-------AAT-ACATAAA---A---AAGTGACA-----AA-----C------ATAAGT-TAAC-CCCATTAATTCAAAGAACGGTCCACATACC-C--CCGA-GTGTCTGCAGATATCCGCTGCGCAAAATCTATAAATGCTAGTAGTATTCTTATA-------CGGC-A--TACAAA--GAAAGAT-TGAGGAAATATTCAGGGAAAGA-ATAAGCCAAACGTCAGAAATATAAAGCCAGTCGCTCCGGAGTAA-TAC----aacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|8 : caaGCAAAGGTATTGGCCCTTCGGTTAGTA--CC-C--------------CGCTC-C---GTTTT--------------------T-CC----------CC---AATAGT-------------TTT-T-T-CG-T---CA-AAT------C-----TATGTTCAATCCATCC---A------------AA-----T------------T-----AACACTTCTATAAT-A---CAA---A---AGGC-ACA-----AACGTATG------TTGTGG-AAAGGCTTTTTACTTCAAGGAATGGTCAATATACC-CCAC-AA-CTGTCTTCAAGCACCCGC------AAATCTATAAGCG-----AATATTTTTATG-------CAAC-A--TACAAA--GAAAGCTA-GAGGAGGTATTACGAGACAAATATAAGCCCAATGTCAGAAATAGTAAGCCAGCCGTTCTGGAA-AA-GGC----CC-------TTACTCAA
gi|9 : TGG--CACATT--TATAATCGGTTAATACAGGAGTAAAACGGCTCTAAACAACTGTAGCCTGTAATGATAACACGTTTTAAGGTAAGT
blockSeqs : C AC A AAAATCTACACCACCTCTAATTTTTGTTCTCAATGAATTATTGTTTTTAAT TC TTTTAT . CTACTG CAAAATACCTACT CCCAT CCACTTGTGTT GAATT ACTTCTATAATA TACAC G AACATATAT T G A C T CA C A A T A ATGCTAGT ACGTATA A TGC AAA GT T T T T T AATA TTTCAAA AC C T CA TGT A T A T
blockSeqs : . . . TTAAACTGCCTCTGAATTTTTTATCTGTATACTTTCGAAAACA AT GCTT . A CAAAA . . . AAATACAT TAAA C TATATAAG . A C C . . . . A T A GCG . . TAC AAA T G . A T . . . . T . . TA G T T T
blockSeqs : . . . CCACCCCATCGGATTTTTTTAACCTTTATTTCAT T TAAT . C CA . . . TACAA A A CACATAAG . A C C . . . . G T A TA . . GT A A G . A T . . . . A . . T G T T T
blockSeqs : . . . TTACCACCCCCATTTTTTTTTTTAAT G TTT . C G . . . AAATA A C AACATAAG . C A C . . . . G T A CG . . T A T A . A C . . . . C . . T G A T T
blockSeqs : . . . ATACCCAATCTCATTTTTTTTCAT C TTT . A A . . . AAATA C G AACGTATG . A A T . . . . G . T CA . . T A A G . T T . . . . . . . . A G C
blockSeqs : . . . ACACCCTCTGATTTTTTTTCAAT T TTT . C G . . . AAAAA A G AAG . G A . . . . . . . T . T . . . . A C
blockSeqs : . . . AACCCACTAACCTTTTATATCAT T CCC . C G . . . GAAC A G AAC .
blockSeqs : . . . CCACCTATTTGATTTTTTTTTAT T TTT . C G . . . TAA A G AAG .
blockSeqs : . . . CGCTCCGTTTTTCCCCAATAGT C CGT . C A . . . CA A . AAC .
blockSeqs : . . . TTCTGATAATAAGTTTCGT T . . C G . . .
blockSeqs : . . . CCACCACCTTTGATTTCT . . . C . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : C*********** AAANA*********** A****** A****
originalCons : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
finalCons : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AATC-----------TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACAAANA-----------AAAA------AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TACA----GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
Alignments
lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111 22222222222222222 11111111111 2222222222222222 1111111 3333333333333333333 1 22222222 2222222 222 11111 22 1111 2222222 1111
lowQualScore : 2 33 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 444 88888888 3 333333333333 77777777777777777 88888 55555555555 99999 4444444444444444 5555555 3 8888888888888888888 4 2 1 3 0 5 77 5 1 1 5 1 00000000 1111111 6 888 88888 55 5 0 5 1 2 5 2222 1111111 99 1 0 6 99 5555 1 3 0 1 0 1 0 0
lowQualScore : . .. . ....................................................................................... ... ........ . ............ ................. ..... ........... ..... ................ ....... . ................... . . . . . . .. . . . . . ........ ....... . ... ..... .. . . . . . . .... ....... .. . . . .. .... . . . . . . . .
lowQualScore : 7 77 9 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 99999999 1 333333333333 00000000000000000 33333 88888888888 11111 5555555555555555 4444444 2 3333333333333333333 0 1 3 0 4 7 99 7 4 7 1 0 77777777 7777777 7 888 55555 33 2 3 7 0 3 7 1111 7777777 22 4 8 7 22 0000 0 0 7 9 4 4 4 6
consensus : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
Reference ( family-3377 ) : CAGGCAGGAGTAACGGACCTT-GGTTAGTC--CC-CN-----TACC----CGATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TT-T---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAN-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAGGCCTTTTACTTCAAAGAACGGCCCACATACC-C--C-AA-CTGTCTTCAGACACCCGCTGTGCAAAANCTATAA-CG-----AATATTCTTATA-------CGGC-AT-TAC--A--GAAAGCTATGAGGAGGTATTACGTGACAAA-ATAAGCCCAACGNCAGAAATATTGAGCCAGCCGTTCCGGAATAA-GAC----CC-------TT--TCAAATCGCCCATTTAGGGGCTAAAAA-GTTTAGTCGTAAATAAAGTGG--CACATT--T-TAACGGGTTANTACAGGACTAAAACGGCTCAACACAACTGTAGCCTGGTATGGCAACACGTTTCAAGGAAAGTC
gi|1 : GACAGGAGTAACGAACCAC-G---------CC-CT--------C----TGATTTC---TTTTT--------------------T-TT----------TT---A----T-------------TCT-T-T-TT-T---CATAATTGCTTTC-----TATGTGCAATCCATC----G------------TA-----T-----------AT-----AATATACT---AATTA---AAC---AT--AATTAACA-----AACATTAG------TTGAGT-AAAGACCGTTTACTTCA------------CATACC-C--C-AAACTACCGTTAGACACCTGCAGTGCAAAATGTATAA-CG-----AATATTCTTATA-------TGGC-AT--AC--ACTAAAAGCTA-GAGGA--TATTACGCGACAAA-ATAAGATAAACGTCA------TTGAGCCAGCCGTATTGGAACAA-AAT----CC-------TT--CAAAATGGTTCATTTAGGGGATAAAAC-GTT--GTCGTAAATAAAGTGG--CACATT--T-TAACGGTTTAGAACAAGACTAAAACGACTCAACACAACTATAGCCTGGTATAGCCGAATGTTTCAAAGAAATTC
gi|1 : AGACAGAAGTAACGGACCTT-GGTTAGTC--AC-CC-----CACC------ACC------TTTG--------------------A-TT----------TC--------T-------------TAG-T-T-TT-T---CA-AAaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacatttttgaaaaactaagaaatcaaaggtggtggggtgactaaccaaggtccgttacttctgtctatga
gi|10 : gacaggagtaacgaaccacgccctctgatttcttttttttttattcttttttcataattgctttctatgtgcaatccatcgtatataatatactaattaaacataattaacaaacattagttgagtaaagaccgtttacttcacataccccaaactaccgttagacacctgcagtgcaaaatgtataacgaatattcttatatggcatacactaaaagctagaggatattacgcgacaaaataagataaacgtcattgagccagccgtattggaacaaaatccttcaaaatggttcatttaggggataaaacgttgtcgtaaataaagtggcacattttaacggtttagaacaagactaaaacgactcaacacaactatagcctggtatagccgaatgtttcaaagaaattcaacaacaaataaactctttcatgtttatttactaatatcaatatcaccgagaacagttgattggtgcaataatacattCAGGCAAG------GGGCATT-GGCTAGTT--CC-CT-----T--C----TGAT------AATAA--------------------G-TT----------TC---G----T-------------TTT-G-T--------CA-AAT------A-----TATGTTGAATCCATC----CAAAATACCTACTTA-----T-----------GT-----AACT-------ACA-A---ACA---A---GAGTGACATATATAA-----G------TTGAGT-AAGGGCCTTTTatga
gi|11 : tgcaCAGGCAGAACTAACCGAAATT-GATTAGTC--CC-CAAAATCTACA----CCACCTCTA-ATTTTTGTTCTCAATGAATTATTGTT-TT----------TA---A----T-------------TTT-C-TGCT-T---CA-AAT------C-----TTCGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------
gi|12 : CAGGCAGGAGTAACGCCCCTT-GATTAGCC--CC-TA-----TAC
gi|12 : -T---TA-AAT------C-----AATGTTCAATCCATC----A------------TA-----T-----------AT-----AACT-------A---A---AAA---A---AAGTCACA-----Attcaggtataaatataaaaaaaattaaatcaatgttcaatccatcatatataactaaaaaaaagtcacaa
gi|13 : caggcaggagtaacgccccttgattagcccctatacttcaggtataaatataaaaaaaa-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----AACA-------AAT-A---AAAT--ACACAAGTAACACACATAA-----G------TTGAGT-AAAGGCCTTTTACTTCAA
gi|14 : GCAGAAATAATGGACATT-GGTAAGTC--CCACA-----CACC----C--TCTG---ATTTT--------------------TTTT----------CA---A----T-------------TTT-TCT-TT-T---TA-AAT------CTACTGTATGTTCATTCCATC----G------------TA-----T-----------Agcaaaataccgcaagttttgttatatac
gi|15 : aCAAGCAGGAGTAACGGACTTT-GGTCATTC--CC-C
gi|16 : acaCAGGCAGGAGCAACGGACCTT-GGTTAGTC--catccctc
gi|2 : caCAAACAGGAATAACGGACCTT-AGTCAGTC--CC-CA------ACC----CACTAAC---CTTTT--------------------A-TA----------TC---A----T-------------TTTAT-T-TT-T---CC-AA
gi|2 : taaatta-----AA-----G------TTGAAT-TAAAAAATTTTACTTCAAGGAACGGTCCGCATACCTC--C-AA-CTGTCTTCAAACAAAC----TTCAATAACTAAAA-TA-----AATATTCTTATA-------CGGC-ATGCAC--A--GAAATCT-TGAGGATGTATTACGTGACAAA-CTAAGTCCAACGTCTGATATATCGAGCCAGTCGTTTCAGAATAATGATAATATCTTTCAAATT--TCAAATCGCCCA-TTAAGGGCTACAAT-GGTTAgttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccattaagggctacaatggttattacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|2 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccATTA-AGGGCTACAATGGTT-ATTACAACTGTGACATTGAATGGCAACATGTTTCAAAGAAAGTCttacaactgtgacattgaatggcaacatgtttcaaagaaagtcaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|3 : taaattacaaacaggaataacggaccttagtcagtccccaacccactaaccttttatatcattttatttttccaagttgaattaaaaaattttacttcaaggaacggtccgcatacctccaactgtcttcaaacaaacttcaataactaaaataaatattcttatacggcatgcacagaaatcttgaggatgtattacgtgacaaactaagtccaacgtctgatatatcgagccagtcgtttcagaataatgataatatctttcaaatttcaaatcgcccAGGAGTAACGGACCTT-GGTGAGTT--CC-CC-----CACC----T-ATTTG---ATTTT--------------------T-TT----------TT---A----T--------------------------------AT------A-----TATATTCAATCCATC----G------------TA-----T-----------AT-----AAC----------C-A---AAA---C---AAGTCACA-----AA-----C------ATAGGTTAGATGCGTTTAATTTCAAAGCACACCCCACATACC-A--C-AAACTGTCTTCAAACACCCATTGTGCAAAAACTATAA-CG-----AATATTTTTATAACGTATATGGC-ATACAC--A--GAAAGCTA-GAGGAGGTAT-ACGTCTCAAA-ATAAGTCCAACAACAGAAATCTTGAGCCAGTCGTTCCGGATTAA-GAC----CC-------TT--TCAAATCGTCCATTTAGGGACTAAAAA-GTTTAGTCGTATATAAAATGG--CACATT---------------TACAAGACTAAAACGGCTCAACACAACTGCAGTCTGGTATGGCAACATGTTTCAAGGAAAGTCaacaacaaatgactctttcattctcacttgcgtatgctaatatcatgtagaagagctgatgagagcaatttcttaatgcataattcatttttttaaatcagagggtgtggggggttaacaaagattc
gi|4 : CAGGTAGGAGTAACGGACCTT-GGTTAGTC--CC-CA-----TACC----CAATCTC---ATTTT--------------------T-TT----------TC---A----T-------------TTT-T-T-TAAT---CA-AAT------C-----TCTGTTCAATCCATC----A------------TA-----T-----------GT-----AACA-------AAT-A---AAA---A---AAGTGACA-----AA-----G------TTGAGT-AAAAGCCTTTTACTTCGAAGCACAGCACACATACC-C--T-AT-CTGTCTTCAGACATCCACTGTGCAAAAACTATAA-CA-----AATATTCTTGTA-------CAGTAAG-TAC--A--GACAGCTGTG-GGAGGTATTGCGTGACAAA-ATAAGCCCAACAACAGAAATATTGAGTCGACCGTTCCTTAATAA-AAC----CC-------TT--TCAAATTGATCATTTAGGGGCTAAAGA-GGCTATTTGTAAATAAAGTGGCACACACT--T-TAACGGATTATTAAAAGACTGAAAAGGCTCAACACAACTGTAGTCTGGTATGACAACATGTTTCAACAGGAGTCaatctttcacgatcacttacttatgttaatatcatctaaaacagctaatgagatcaattttcta
gi|5 : CATGCAGGAGTAACGGCCCTT-GGTGAGTT--CC-CC-----CACC----CCATCGG---ATTTT--------------------T-TTAACCTTTATTTC---A----T-------------TTT-T-T-CC-C---CA-AAT------C-----TATGTTCAATCCATC----G------------TA-----T-----------AT-----ATCG-------AAC------AA---A---AAGTGACAAACATAA-----G------TTGAGT-AAAGGCATTTTtgtaaacttgaataaa
gi|5 : aGTGACAAA-ATAAGCCCAACAACAAAAATATTGAGCCTGCCGTTCCGGAACAA-GAC----CC-------TT--TTAAATCGCCCATATAGGGGCTGAAAA-GTTTAGTCATAAATAAAGTGA--CACATTTGT-TAACGGGTAATTGCAAGACTAAGGCGGCTCAACACAATTATAGCCTGGTA---CGACATGTTTTAAAGAAAGTCcatgaagtgacaaaataagcccaacaacaaaaatattgagcctgccgttccggaacaagacccttttaaatcgcccatataggggctgaaaagtttagtcataaataaagtgacacatttgttaacgggtaattgcaagactaaggcggctcaacacaattatagcctggtacgacatgttttaaagaaagtcaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : acatgcaggagtaacggcccttggtgagttcccccaccccatcggatttttttaacctttatttcattttttccccaaatctatgttcaatccatcgtatatatcgaacaaaaagtgacaaacataagttgagtaaaggcattttcatgaaGATTAATGGACTTT-GGTTGGTCACTC-CT-----TACCACCCCCATTT-----TTTT--------------------T-TT----------TA---A----T-------------TTT-T-T-TT-TTATCA-AAT------C-----TATGTTCAATCCATCCAAAA------------TACCCATT-----------ATGAATTAACA-------AAA-A---AAATAAA---GAGTGAGA-----AA-----CATATATTTGAGT-AAAGGCCTTTCACTTCAACGAA-GGCTCATATACT-C--C-AA-CTGTCTTTAGACACCCGCTGTGCAAAAACTATaacaacaaattatttctttcgtgcttacttatctatttcatgaggcgaattgtttaatccataatttgtttatcgaagattcactgccatttc
gi|6 : AAAAATGTTTAGTCGAAAATAAAGTGG--CACATT--T-CAACGGGTTAATACAGGACTAAAACGGCTCGAAACAACTGTCGCCTCTGATGATAACACGTTTTAAGGTAAGTCtaatttataattaaaaaaaatgtttagtcgaaaataaagtggcacatttcaacgggttaatacaggactaaaacggctcgaaacaactgtcgcctctgatgataacacgttttaaggtaagtcaacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|7 : gattaatggactttggttggtcactccttaccacccccatttttttttttaattttttttttatcaaatctatgttcaatccatccaaaatacccattatgaattaacaaaaaaaataaagagtgagaaacatatatttgagtaaaggcctttcacttcaacgaaggctcatatactccaactgtctttagacacccgctgtgcaaaaactattaatttataattaaaAGGCAGGAATATCGGACCTT-GTTTAGTC------T-----TAAA----CTGCCTCTGAATTTT--------------------T-TA----------TCTGTA----TACTTTCGAAAACATTT-C-T-TT-T---CA-AAT------C-----CATATATAACCCATC----C------------TA-----TCCACTTGTGTTAC-----AACA-------AAT-ACATAAA---A---AAGTGACA-----AA-----C------ATAAGT-TAAC-CCCATTAATTCAAAGAACGGTCCACATACC-C--CCGA-GTGTCTGCAGATATCCGCTGCGCAAAATCTATAAATGCTAGTAGTATTCTTATA-------CGGC-A--TACAAA--GAAAGAT-TGAGGAAATATTCAGGGAAAGA-ATAAGCCAAACGTCAGAAATATAAAGCCAGTCGCTCCGGAGTAA-TAC----aacatcaaatgtattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcagatcaattttctactccgcaacttgttt
gi|8 : caaGCAAAGGTATTGGCCCTTCGGTTAGTA--CC-C--------------CGCTC-C---GTTTT--------------------T-CC----------CC---AATAGT-------------TTT-T-T-CG-T---CA-AAT------C-----TATGTTCAATCCATCC---A------------AA-----T------------T-----AACACTTCTATAAT-A---CAA---A---AGGC-ACA-----AACGTATG------TTGTGG-AAAGGCTTTTTACTTCAAGGAATGGTCAATATACC-CCAC-AA-CTGTCTTCAAGCACCCGC------AAATCTATAAGCG-----AATATTTTTATG-------CAAC-A--TACAAA--GAAAGCTA-GAGGAGGTATTACGAGACAAATATAAGCCCAATGTCAGAAATAGTAAGCCAGCCGTTCTGGAA-AA-GGC----CC-------TTACTCAA
gi|9 : TGG--CACATT--TATAATCGGTTAATACAGGAGTAAAACGGCTCTAAACAACTGTAGCCTGTAATGATAACACGTTTTAAGGTAAGT