lowQualScore : 1 111 11 11 11111 1 111 33333333333333333333333333333333333333333 1 1111111 1111 111 1111 222222
lowQualScore : 1 1 333 3 22 333 1 2 1 2 2 2 0 7 5 2 8 33 0 2 2 2 33 0 6 2 0 4 2 2 2 2 2 0 33 2 2 555 2 3 88 4 4 33 33333 55555 4 22 3 22 4444 777 2 66 2 4444 88888888888888888888888888888888888888888 2 7 2 22 2 4 6666 88 2 2 2 2 44 3 33 2 9 999 2 4444444 0 1111 8 5 888 0 4444 333333 1
lowQualScore : . . ... . .. ... . . . . . . . . . . . .. . . . . .. . . . . . . . . . . . .. . . ... . . .. . . .. ..... ..... . .. . .. .... ... . .. . .... ......................................... . . . .. . . .... .. . . . . .. . .. . . ... . ....... . .... . . ... . .... ...... .
lowQualScore : 9 9 333 8 66 333 2 0 4 0 0 0 2 9 9 7 0 22 8 4 7 7 77 9 6 5 1 2 5 7 7 7 7 9 44 5 7 444 7 3 44 6 4 33 66666 22222 6 66 0 88 2222 888 0 00 0 2222 22222222222222222222222222222222222222222 0 0 0 88 8 1 6666 88 0 0 0 1 33 7 11 4 4 333 7 4444444 3 8888 9 0 111 8 2222 000000 4
consensus : CACACACCAATTAATTTTGTACTGTT-CT-ACA---TA-TA--GA---GACATG-CACTTCTGGAACACTGGAC-ACATTACC-AATG-GTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-ACAA-TTCTG-CCCATTTGTTGCAGTGTA--TC-ACTACGCATCTTTAAACT-GTTATANCTT-CATCAAACAGTTCCCAATGTCATCCAAAC-TTG-GCAGAA--C--TCATGAAAATGTTCCAATGTTCTCAT-A---TGTA--CAAAGAA--ATA----TGA-C-ATT-TTA-NGC-A----TTTTC--------A--A----C--AAA-A-AAT--N-TGC-----CCAA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GGG-AG-GTAA-TTGNTAAGTGAG--ACC-T-TA---A-AT-------ATCGGT-A--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
Reference ( gi|10 ) : CACACACCAATTAATTTTGTACTGTT-CT-ACA---TA-TA--GA---GACATG-CACTTCTGGAACACTGGAT-ACATTACC-AATG-GTTCTAAAAGTGCCATATTCCCACAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCGGGTTG-CTTTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-ACAA-TTCTG-CCCATTTGTTGCAGTGTA--TC-ACTACGCATCTTTAAACT-GTTATAGCAT-CATCAAACAGTTCCCAGGGTCACCCAAAC-TTT-GCAGAA--A--TCATGAAAATGTTCCAATGTTCCCAT-A---TGCA--CATAGAA--ATA----TGA-C-ATT-TTA-TGC-A----TTTTT--------A--A----A--AAA-A-AAT--T-TAC-----CCAA-CCGCTTTACACAGCTCTAATT-TCTTG--GGCGTAATAATCTTGCTACCGTCATGTAA-GGG-AG-GTAA-TTGTTCAGTGAG--ACC-T-TA---A-AT-------ATCAAT-A--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
gi|3 : CACACACCAATTAATTATGTACTGTT-CT-ACA---TA-TA--GA---GACATG-CACATCTAGAACACTGGAT-ACATTACC-AATG-GTTCTAAAAGTGCCTTATTTCCATAGAA-AGTCCTCTGTTGGTCCAAGT-ATGCAG-AAAA-AA--A--TGGGGTTGATTAGGTTG-CTTTTTCACAATTACGATGGTTTGATGGCA-CCCTTTCATT-TTTG-ACAA-TTCTG-CCCATTTGTTGCAGTGTA--TC-ACTACACATCTTTAAACT-GTTATAGCAT-CATCAAACAGATCTCAATGTCACCCAAAC-TTT-GCAGAA--A--TCATAAAAATGTTCCAATGTTCCCAT-A---TGCA--TAAAGAA--ATA----TGA-C-ATT-ATA-TGC-ATTATTTTTT--------G--C----A--ACA-A-AA---T-TGC-----CCAA-CCGCTTTACACAGCTCTAATT-TCTTT--GGCGTAATAATCTTGCTTCTGTCATGTAA-GGG-AG-GTAA-TTCTTCAGTGAG--ACC-T-TG---A-A
gi|2 : ctCACATAACAATTAATTTTGAACTGTT-CT-ACA---TA-TA--GA---GACATT-CAATTTTGGAACACTGGAT-ACATTACC-AATG-GTTCTAAAAGTGCCTTGTTCCCATAGAT-AGTCCTCTGTTTGACCAATT-ATGCAGAAAAA-AA--ACATGGGGTTGAGCAGG-TG-GTTTTTCACAATTTCGATGGTTTGATGGCACCCCCTTCATC-TTTG-ACAA-GTCTG-ATCATTTGTTGCAGTCTG--TC-ACTCCGCATCTTTAAACT-GTTATAGCTT-CATCAAACAGTTCCCACTGTAATCCAAAC-TTG-GCATAA--A--TCATGAAAATGTTCCCATGTTCCCAT-A---TGCA--CAAAGAA----A----TGA-C-ATT-TTA-TGC-A----TTTTT--------A--A----C--AAA-A-AAA--A-TGC-----CCAA-CCGCTTTACACAGCTCTAATT-TCTTA--GGCGTAAGAATCTT--T-CCGTCATGGAA-GGG-AG-GTAA-TTCTTAAGAGAG--ACG-TATA---A-GT-------ATgagtagaaattgtcatgagatgtgactcaaatttttgtcaaacaaacctttaccatttcttaatataaaaatatgccttttaaattcatcgcgcaattgttttcgaatccatgcaccaaaa
gi|5 : acagattgttaaacatatgatgacttacatacttgaacgtctCACACACCAATTAATTTTCCACTGTT-CT-ACA---TA-TA--GA-----CATG-CACTTCTGTAACACTGAAT-ACACTGTC-AATA-GTTCTAAAAATGTCTTGTTTCCATAGAA-TGTCCTCTGTTAGTCCACAT-ATGCAG-GAAA-AA---CATGGGGTTGACCACATTG-CTTTTTCATTATTTTGATGTGTTGATGACA-CCCCTTCATT-TTTG-ACAA-TTTTG-CCCATTTGTTGCTGTGTA--TCCACTACGCATCTTTAAACT-GTTATATCTT-CACCCAACAGTTCCCAATGTCATCCAAAC-TTG-GCAGAA--C--TCATGAAAGTGTTCCAATGTTCTCAT-T---TGTA--CAAAGAA--ATA----TGACC-ATT-TTA-AGC-A----TTTTC--------ATCA----A--AAC-T-GAT--T---C-----CCAA-CCGATTTACACAGCTCTAATT-TCTTA--GCCGCAGTTATCTagttacatgttcttaaacaagtatgtttggcatagtacttgtaacatttcttaaaaacttttcgtatttatttcgaatttgtttt
gi|4 : gctgaaccacttcctaccagatcgatatatgaaaatacagtttacgtctCACACACCAATTAATTTTGTACTGTT-CT-ACA---TA-TA--GA---GCCATG-CGCTTCTGGAACACTGAAC-ACATTGCC-AATG-GTTCTAAAAGTGTATTGTTTCCATAGAA-TGTCCTCTGTTAGTCCAAAT-ATACAG-AAGA-AA--ACATGGGATTGACCAGGTTG-CTGTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-ACAT-TTCTG-CCAAGTTGTGGCAGTGTA--TC-ACTACGCATCTTTAAACT-GTAATATCTT-CATCCCACATAACACAATGTCATCTAAAC-TTG-GCAGGA--C--TCGTGAAAATGGTTCACTGTTCTCAT-C---TGTA--CAAAGAA--ATA----TGATT-ATT-TTA-AGC-A----TTTTC--------A--A----C--AAA-A-----------------TAA-------TGCATATCTCTGTTT-TCTTG--GGCGCATTAATATTGCTTTCGTCAC-TAAGGGG-AG-CTAA-TTGGTAAGTGAG--ACA-T-CATAGG-AT-------ATTCGT-G--TTTA-A-C--TATAaattggtaagtgagacatttggcggttttctattctagaaataaaaaatgaatatattacacattttagtcacaatatttaatatacatgtatgtagatatggagtttata
gi|12 : CACACACCAATTATTTTTGTATTGTT-CT-GCA---TA-TAAAGA---GGCATG-CACTCCTGGAACACTGAAC-ACACTGAC-AATA-ATTCTTAAGGTGTCTTGTTTCCATAGAT-TTTCCTCCGTTAGTGTAAAT-AGGCAG-A----------------TTGA----------TATTTCACAATGTTGATGGTTTGATGACA-CTCCTTCATA-TTTT-ACAAATTTTG-CCCATTTGGTACAGTGTA--TC-ACTACGCATCTTTAAATT-GTTATATATT-TACCAA-CAGTACCCAATGACATCCAAAC-TTG-GCAGAA--C--TCATAAAAATGTTCCAGTGTTCTCAT-A---TGTA--CA--AAA--ATA----TGA-CCATT-GTA-AGC-A----TTTTC--------A--C----C--AGT-A-ATC--A-TGC-----CCAAATCGATTTTCACAGCTCTAATT-TCTTC--GGCGCAATAAT----CTA---------AG-GGG-AG-GTAATTTGTT-AGTAAA--ACC-TATA---A-Acacaatctgtagctattgacattgaaccatctgtggatgaaaggcaatacattgcataatatcaattataattgtatatggcattcagttcaatatcgtcggataa
gi|16 : tctCACACAACAATTAATTTTGTACTGTT-CT-GCA---CA-TA--GA---TA-ATG-CACTTCTGGAACACTGGAT-GCACTACC-AATC-GTTCTAAAA---------------------GTCC-CTG--GATCC---C-AT-------AG-AA--ACATGGGGTT--CCAGGTTG-ATTTTTCACAATTCCAATGGTTTGATGGCA-CCCTTTCATA-TTTG-ACAA-TTCTG-CCCATTTGTTGCAGTGTA--TC-ACCGCGCATCTTCTAACT-ATTATAGCTT-CATCAAAatgtccctatcgtccagatgtgtcagatgtt
gi|26 : ctCACACACCAATTAATTTTGTACTGTT-AT-ACA---TA-TA--GA---GACATG-CACTTCTGGAACACTGGAT-ACATTACC-AATG-GTTCTAAAAGTGCCTTATTCCCATAGAT-AGTCCTCTGTTGGTCCAAAT-Agaaatataacatgttatgcattttcaacaaaaaaaaaaatgacaaagcgctttacacagctctaatttctcgggcgtaagaatcttgctaccgtcatgtaagggagata
gi|34 : tctCACACACCAATTAATTTTGCACTGTT-TT-ACA---TT-TA--GA---GA
gi|9 : ctACACAACAACTAATTTTGCACTGTT-CT-CCG---TA-TA--GA---GAAGCG-CACTTCTGGAACACTGGAT-ATATAACC-AATG-TTTCAAAAAGGGCCTTGTTCACATGGATAAGTCCTCTGTTGGT-CAAAT-ATACAG-GAAA-CA--ACTT--GGTTGATAAGGATG-CTTTTTCACAATTTCAATGGTTTGATGACA-TCTCTTCATT-TTTG-ACAA-TTGTA-CCCA-TTGTTGAAATTAA--TC-ACT--GTATCATT--ACC--TTAT---GT-CATC--------------------CAAAC-TTG-GTA------------GAAAATGTTCAAATGTTCTCAT-A---TGTA--CAAAGAA--ATA----AGA-CAATT-TTA-TGC-A----TTTTC--------A--A----C--AAA-A-AATA-A-TGC-----CCAA-TTGGTTT--TCAGTTCTAATT-TCTTG--GGCGCAAAGATCTTGCCACTGCCATGTAA-AGG-AG-ATAA-TTCTTAAGTGAG--ACC-T-Tt
gi|22 : ACATAACATTTAATTTTGT-CTGTT-CT-ACA---CA-TA--GA---GAAATT-CACTTCTGGACCACTGGAC-ACACTACC-AATG-GTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGTTTCAATT-ACGCAG-AAAAGAA--ACATGG---TGACCATGATG-CTTTTTCACAATTTTGGTAGTTTGATGACA-CCCCTTTATT-TATG-AAAA-TTCTG-CCCATTTGTTGCAATGTA--TT-ACAATGCATCTTtactttcattgttcttgttaaaaatcttgtgatttaacatattagtattatatactaaataaaataaacaaaaaaaaatcatgcaaaactaaa
gi|11 : CACACCAATTAATTTTGTACTGTT-CT-ACA---TA-TA--GA---GACATA-CACTTCTGGAACACTGAAC-ACATTGCC-AATG-GTTCTGAAAGTGTCTTGTTTCCATAGAT-ATTCTTCTGCTAGTCCAAAT-ATGCAG-AAAA-AATTGC-TG----TGACCAGATTG-CTTTTTCACAATTTCGATGGTTTGGTGACA-CCTCTTAATTGTTTG-ACAA-TTCCG-CCCATTTGTTGCAGTGTA--TT-ACTACGCGTCTTTAAACT-GTTATATATT-CACCTAACACTTCCCAATGTCGTCAAAAC-TCG-GTAGAA--C--TCTTTGAAATGTTTCAATGATCTCAT-A---TGTA--CAAATAG--ATA----TGACC-GTT-TAA-AAT-A----TTTTC--------A--A----C--AAA-A-AATA-A-TGC-----CCAA-CCGATTTACACAGCTTTAGTT-TCTTG--GGCGCAATAAT-----TA---TCA---AG-GGG-AG-GCAA-ATGGTAAGTGAG--ATT-TGTA---GTAG-------ATCTGT-G--TATAGA-CAGCATA-TAAC----AC
gi|17 : CACAC-AATTAATTTTGCACTGTT-CT-ACA---TA-TA--GA---GAAATG-CACTTCTGGAACACT--ATCACCTTACT-AATG-GCTGTAAAAGTGAATTGTTGACATATAT-AGTCCTCTGTTGGTACTAAT-GTGCAG-AACA-AA--ACATTGGGTTGACCAAGTTA-TTTTTTCACAGCTT-GATGGTTTGATGACA-CCCCTTAATT-TTCG-ACAT-TTCTGCCCCATTTGTTGCTGTGTA--TC-ACTACGCATCTTTAAGCT-ATTATACCCT-CATCAAACAGTTCCCAGAGTCATCAAAAC-TTG-GCAAAA--C--TCATGGAAATACTCCACTGTTATCATAA---TGTA--CAgtgtttgcaccatattatacatgataaccatg
gi|1 : ctCAACAATTAATTTTTTACTGTT-CT-ACA---TA-TA--GA---GAAATG-CACTTCTAGAACACTGGAT-ACATTACC-AATG-GTTCTAAAAGTGCCTTGTTCCCA----T-AGTCCTCTGTTGGTCCAATT-ATGCAG--AAA-AA--ACATGGGGTTGACCAGATTGCCTTTTCCACAACTTTGATGGTTTGGTGACA-TCCCTTCATT-TTTG-ACAA-TTCTG-CCCATTTGTTACAGTATA--TC-ACAATGCATCTTTAAACA-GTTTTAGCTT-CAACAAACAGTTCCCAGTTTCATCCAAAC-TTG-GCAAAA--A--TCATGAAAATGTTCTAATGTTTTCAT-A---TGCA--CAAAGCATTATA----TAA-C-ATT-TTA-TGC-A----TTTTT--------A--A----C--AAATA-AAA--T-TGC-----CCAA-ATGCTTTACACAGCTCTAATT-TCTTG--GGAGTAAAAAT----CTACCGGCATGTAA-GGG-AG-GTAA-TTCTTAAGTGAG--ACC-T-AA---A-Aaa
gi|8 : ccCAATGAATTTTGTACTGTT-CT-ACA---TA-TA--GA---GACATA-CACTTCTGGAACACTGGAT-ACATTACC-AATG-TTTCTAAAAGTGCTTTATTCCCACAGAT-AGTCCTCTGTTGGTCCAATT-ATGCAG-AAAA--A--ACATGGAGTTGACCAGGTGG-CTTTTTCACAATTTTGATGGTTTGATGGCA-CCCCTTCATT-TTTG-ACAA-TACTT-CCCATTTGTTGCAGTGTA--TC-ACTACGCATCTTTAAACT-GTTATAGCTT-CATCAAATAGTTCCCAATGTCATCCAAAT-TTG-ACAAAA--A--TCATGAAATTGTTCCAATGTTCCCAT-A---TGCA--AAAAGAA--ATA----TGA-C-ATT-TTA-TGC-A----TTTTT--------A--A----C--AAA-A-TAA--T-TGC-----CCAA-CCATTTTACACAGCTCTAA-T-TCTTG--G-------------GCTACCATCATGTGA-GGG-AG-GTAA-TTCTAAAGTGAG--ACC-TATA---G-AT-------cgttctcatcatcggttgtgtcctgttaaacaattttacctgacttttccttattgtagctgacaatatataatatgaaataaggcactgcctaaaaggggatttatcaatttcaatcaatgtataattattatgtatatgtagattatttaatatcagtatgtcaggata
gi|13 : aaTAATTTTATACTTTT-CC-ACA---TA-TA--GA---GACTTG-CATTTCTGGAACACTGAAC-ACAATATT-AATG-GTTCTAAAAGTGTCCTGTTTCCATAGAT-TGTCCTCTGTTAGTCCAAAT-AGGCAG-GACA-AA--ACATGGGGTTGACCAGATTG-CTTTTTCACAATGTCAATGGTTTTTTGACA-CCCCTTCATT-TTCA-ACAA-TTCTG-CCCA--TAATGCAGTGTA--TC-ACTACGCATCTTTAAACT-GTAATATCTT-CATCCAACAGTTCTCAATATGATCCAAAC-TTG-GCAGAA--T--TCATTAAAATGTTACAATGTTCTCAT-A---TGTA--TAAAGAA--ATA----TGA-CTACT-TTA-AGA-A----TTTTC--------A--A----C--AAA-A-CAT--A-TAC-----TAAA-CCGATTTACACAGTTCTAATT-TCTTA--GGCGCAATAA-----------TCAT-------G-AA-GTTA-TTGGTAAGTGAG--ATC-T-TA---A-ccattttcgtgaataaatacaatttatttgtcctatgatgtgaagtaaatacataattatattgtatatgaacaacttacaatgttgatggatat
gi|7 : TTTTGCACTGTTTCT-ACA---TA-TA--GA---GAAATG-TACTTCTGGAACACTGAAC-ACATTATCAAACG-GTTCTAAAGATGTC-TGTTTTCA
gi|28 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttTTTGTATTGTT-CT-ACA---TAGTA--------ACATA-CACTTCTGGAACACTGAAC-ACATTGTG-GATG-GTTCTAAAAGTGTCTTGTTTCTAAACAT-TGTCCTCTGTTAGTCCAAAT-ATTCAggttaaacagaaagattactttttcacaatttcaatggtttgatgtcaccctttaatttttttacaagtctacacaattgttgcagtgtatcactacgcatcttcaaactgctatacatgcatctaacagctgccaatgccatccaaatgttgaagagctcgtgaaaatgtttcagtttgccaatcggaccgttttaaacatttgcaacacaaaatacacccactcaatttacacagcgttagtttctttggcgcaagaatcatgctaccgtcattaaagggaaataattggtaagtgaaaccttcaatcataaaacatagtgtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|14 : aggACTGTT-CT-ACA---TA-TA--GA---CAAATG-CACTTCTGGAA-------T-ACATTACG-AATG-GTTTTAAA-GTGCCTTGTTTCCATAGCT-AGTCCTCTGCTCGTCCAAAT-ATGCAG-AAAA-AA--AAA-GGGATTGACCAGGTTA-CTTTTTTACAATTTTGATGGTTTGATA--A-CCC
gi|6 : tcacatacCTGTT-CT-ATA---CAATA--GA---AAGATG-CACTTCAGTAATGCTGAAC-ACATT------TG-GTTCTAAAAGTGTCTT-TCTCCATTAAT-AGTCCTCTATTGACCCAACTTATGCAC-AAAA-AA--ACTTGTAGTTGACCAGAT-G-CTTTTT-ATAATTTTGATGAT--------A-CCCCTTTATT-TTTG-ACAA-TTTTG-CCCATTAGTTGCATTTTA--TC-ACTACGAATCTTTAAACT-GTTATATCTT-CATCCAACTATAGCCACTGCCATACAAAC-TTG-GCAGAA--T--TCATGCAAATATTCCAATGTTCTCAT-A---TGTA--CAAAGAA--ATA----TGATC-ATT-TTA-AGC-A----TTTCA--------A--C----A--AAA-ATAAT------G-----GCAA-CTTATTTATATAGCCCTTATT-GCTTG--GGCGATATAATCTCGATACTGTCAC-TAA-GGGAAG-GTAA-TTCGTAAGTGAaaatatcggcagaactcaagacaatgttcaaatgttctcattcgtataaagaaatatgacactattatgcattggtaactaaaccgaattacacagctctagtttcgatggcaagactattgcaaccgtcatgcaaagaaggtaattcttaagtgagaccttaaataacaaggtaattgcaatgtagagtttggaaagtaacatta
gi|19 : ctcagtctctttctacgaagtcacatcataacgtatccagattattctcgtcttacatacatttaccaaaataatGCT-CT-ATA---CA-TA--GATCTAACGT-----TCCTAGAACAC--------ATTGCC-AATT-GTTCCAAAAGTGTCCTGTTTCCATAGAT-TGTCcattttcttacaaatgtgacagctgcatacacgtgtgtatattgtaattaacgctaatg
gi|19 : aTT-CTGACAATCTA-TG--GA---AACAGGACACTTTTGGAACA---------ATTGGC-AATGTGTTCTAagaaatatgaccatttcaatcattttcaacaaaaataatcctgatccaatttacacagctctaatttcttgagcgcaataattttgcaactgtaactaaagggaggtaattggtaagtgagaccttaaactaacacaattaatatttataaccataataacttgaactggctaaaatgttataactattgttgtaacactaagttgtaa
gi|7 : agctctatacatagatctaacgttccGATTA-CTTTTTCACAATTTCAATGGTTTGATGTCA-CCCTTTAATT-TTTTTACAA-GTCTA-CACAATTGTTGCAGTGTA--TC-ACTACGCATCTTCAAACT-GCTATA-CATGCATCTAACAGCTGCCAATGCCATCCAAAT-GTT-GAAGAG--C--TCGTGAAAATGTTTCAGT-TTGCCA-------------ATCG------------GA-CCGTT-TTA-AAC-A----TTTGC--------A--A----C--ACA-A-AAT--A-CAC-----CCAC-TCAATTTACACAGCGTTAGTT-TCTTT--GGCGCAAGAATCATGCTACCGTCATTAAA-GGG-AA-ATAA-TTGGTAAGTGAA--ACC-T------------------TCAATCA--TAAA-A-C---ATAGTatatgaccatttcaatcattttcaacaaaaataatcctgatccaatttacacagctctaatttcttgagcgcaataattttgcaactgtaactaaagggaggtaattggtaagtgagaccttaaactaacacaattaatatttataaccataataacttgaactggctaaaatgttataactattgttgtaacactaagttgtaa
gi|20 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttttttgcactgtttctacatatagagaaatgtacttctggaacactgaacacattatcaaacggttctaaagatgtctgttttcaggttaaacagaaaTGCA-TGTAGATC-ACTACCTATCTTTACATTAGTAAT-GTTT-CATCAAACAGTACTCAATGTCGTCCAAAC-TTG-GCAGAA--T--TCACGAATATCTTCTAATGTTCTCAT-A---CGTA--CACAGAA--ATA----TGA-CAACT-TCA-TGC-A----TTTTC--------A--A----C--AAA-A-AAT--GATGC-----CCAA-CCGATTCACACGTGTCTAATT-TCTTT--AGCGTAATAATCT---TACCGTCATGTAA-GGG-AG-GTTA-TTCTTAAATGAG--ACCTT-TAAGCA-AT-------AATGGT-A--TATA-gtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|23 : ACCAAACACATACCAAGATCGTCCAAACCTTT-CCAATAGCA--TTATGCA--TGTTCCAATTCTGCCAA-C---CGCAGCCAT--AA--ATA----TGA-------TTG-AGCTA----TATTC--------A--A----A---------------TACTATGACAAA-CCGCTTGGCACAA---TAATTATTTCGCTGGTGCAAAGGTCTTCTTACCGTT-TCCAA-GGA-AA-GTAA-ATGATAAGCGAA--Acatgtacgtagaaggtattggtg
gi|14 : ACCCAAATATCG-GCAGAA--C--TCAAGACAATGTTCAAATGTTCTCAT-T---CGTA--TAAAGAA--ATA----TGA-C-ACTATTA-TGC-A----TTGGT--------A--A------------------C-TA--------AA-CCGAATTACACAGCTCTAGTT-TCGAT--GGC--AAGACTATTGCAACCGTCATGCAA-AGA-AG-GTAA-TTCTTAAGTGAG--ACC-T-TA---A-AT-------AACAA
gi|21 : tcacatacactgttctacatatagacaaatgcacttctggaatacattacgaatggttttaaagtgccttgtttccatagctagtcctctgctcgtccaaatatgcagaaaaaaaaagggattgaccaggttacttttttacaattttgatggtttgataCCAGGC-TTAAGCAAAA--ACATCATGAAAAGATTCCAGTGTTCTCAT-T---TGTG--CGAAGAA--ATA----TGA-C-AAG-TTAATGG-A----TTTTC--------AGCA----A--AAATA-AA------GC-----CCAG-CCGATTTACACAGCTCTAATT-AATTG--GGCGTTAAAATCGTCCAACCATCATGTAA-GGG-AG-GTAA-TTCTTAAGTGAGATACC-T-TA---A-ggtaattgcaatgtagagtttggaaagtaacatta
gi|24 : aactattgacattctgtcatccaacgaaagcttaccataCCAAAC-CTG-TCAGAA--C--TCGTGCAAATGTTTTAAT----CTAC-A---TA-A--CTTTTAA--ATAAACCTAATC-ATT-TTA-AGC------TTTTTCTTTTATCA--A----ATCAAA-C-AAT--C---C-----CCAA-CCTATATACATACTTCTCTTT-CCTCG--GGCgcaaacaaaagccatgtacacaaattagtgttacatgtac
gi|25 : acatgcaatatatatgtctctCAGAG--T--TCATTAGAAGATTCTAATCTTTCCTT-C---T---------------TA----TGA---ATA-TTA-T---------CTTT--------G--G----A--ATA-A------T-TGA-----CAAA-CTGCTAAACACAATTCTAGTT-TCTCT--TGTACAAGAGTCTTCCTCTCATTATCTAG-GGG-AG-GTTA-TTGTTCAGGGAC--ACT-T-acatg
gi|19 : aAAAGTGTCC---TGTTTCCAT-AGATTGT-----CAGAA--ATA----TGA-CCATT-TCA-ATC-A----TTTTC--------A--AC---A--AAA-ATAATCCT-GAT-----CCAA-----TTTACACAGCTCTAATT-TCTTG--AGCGCAATAATTTTGCAACTGTAACTAAA-GGG-AG-GTAA-TTGGTAAGTGAG--ACC-T-TA---A-ACTAACACAATTAAT-ATTTATA-A-C--CATAATAACTTGAACTGGCTAAAATGTTATAACTATTGTTGTA
gi|16 : agctctatacatagatctaacgttcctagaacacattgccaattgttcca--CAAAGAA--ATA----TAA-C-ATG-TTA-TGC-A----TTTTC--------A--ACAAAA--AAA-A-AAA--T-GAC-----A-AA-GCGCTTTACACAGCTCTAATT-TCTCG--GGCGTAAGAATCTTGCTACCGTCATGTAA-GGG-AG-ATAacactaagttgtaa
gi|33 : ctcacacaacaattaattttgtactgttctgcacatagataatgcacttctggaacactggatgcactaccaatcgttctaaaagtccctggatcccatagaaacatggggttccaggttgatttttcacaattccaatggtttgatggcaccctttcatatttgacaattctgcccatttgttgcagtgtatcaccgcgcatcttctaactattatagcttcatAATCTTGCTACCGTCAT-TAA-GGG-GGTGCAA-ATGGTAAGTGAT--AC
gi|39 : aAA-GGG-AG-GTAA-TTGGTAAGTTAG--ACC-T-TA---A-A
gi|18 : a-T-TA---A-AT-------ATCAAT-A--TATATATC-TTATAGTAAC----ACCAGATAA------ATAAGCATTATCGTACAct
gi|35 : ATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAGCATTAATGTACAcctataaggcgtggactttccgtagtgcgtgtgaatttaacgtgacaccgtgcctaagttttgtttcatttggaggcttcgggtcgagctggggatcaaacacccaatctttgggttgagtggccaacactctgtcacactctactaccccgcttaaatttctgattttacttaaacatacattacacttatatactgagatgtatcatcgaattatattcttacgaaataacaaca
gi|38 : ATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAATATTATTGT
gi|37 : ATA-A-C-TGAAAGTAAC----ACCAGATAA------ATAAGAATTATTGTA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TATATTTTATGTAGCTCACCCAATTGAGCTTGCATGTGGAGCACGTGGTCCAGCATCAAACCAACGGTCGGAGCGTTCGATTCTCCCACACGACCATGTGTAGTGTCCATGACCTTTTTCTTCATTATATTTAGAGCTGGTTCTACACAGGAAAACTTCGAACGTGACGTGTATACGTTGTGATAGTTTCACAATCGAAGTAAAATAAATGAGTTTAAACTCACTCACACGTCTCGCTTGATCACTGAAATAGGAAACATCTGTACTGTGATTCCTATAACTTCTCTTTATTACAAAATTACCAGAAACTGCGGCATCTTCGTAGTACAACGGTTATCAATATCTTGTCTTTATAGCGGTTT
Unaligned ( gi|27 ): GAGTAGAAATTGTCATGACATGTGACTGAAAATTTTGTCGAACAAACCTTTACCATTTCTAAATATAAAAGTACGCCTTTTGAATTCATCGCGCAACTGTTTTCGAATTCATGCACCAAAA
Unaligned ( gi|29 ): AAAAACCACAACATTTTAGATATAAGGTTTACATCTTAAAAATCGTCTTTGAATACCAAGGGTAATCC
Unaligned ( gi|30 ): AATGTAATAATGCAATTAAAATATAATCAAATAAAACGGACACCTGTCATTTTTCTA
Unaligned ( gi|31 ): TAGATAAGTGTCATTGTACGCCGATAAAGCGTGGAGTTGCAATAGTGCGTGTGAA
Unaligned ( gi|32 ): CATACGGCGTGGACTTTCCGTAGTGCTTGTGAATCTAACGTGACACCGGGCTA
Unaligned ( gi|36 ): TGCTTCCGTCACTAAGGAGAGATACTTGGTAAGTGAAACC
Alignments
lowQualScore : 111 22222222222 22222222222222 11 1111 111111
lowQualScore : 1 3 22 333 1 0 2 33 0 2 2 2 33 0 2 1 2 2 2 2 2 0 2 2 2 2 33 2 4 444 2 2 4 2 1 555 22 66666666 333 44 1 333 1 3333 22 333 1 22 1 1 6666666 44444 22 1 33333333333 1 1 2 1 22 2 5555 99 1 1 1 1 22 22 2 8 888 2 00000000000000 66 8 4 44 2222 999999
lowQualScore : . . .. ... . . . .. . . . . .. . . . . . . . . . . . . . .. . . ... . . . . . ... .. ........ ... .. . ... . .... .. ... . .. . . ....... ..... .. . ........... . . . . .. . .... .. . . . . .. .. . . ... . .............. .. . . .. .... ......
lowQualScore : 9 8 66 333 2 1 0 88 3 2 5 5 44 3 4 5 5 5 5 5 5 2 4 4 4 4 44 4 6 111 1 1 2 1 9 999 66 99999999 333 55 9 333 9 9999 66 000 9 99 9 9 2222222 88888 66 9 88888888888 9 9 1 9 66 4 9999 55 7 7 7 7 44 66 0 4 888 5 44444444444444 11 0 4 44 1111 222222
consensus : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTC---T--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC-ATT-T-------T-----CAA--CAAA-A--AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
Reference ( family-335 ) : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTC---T--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC-ATT-T-------T-----CAA--CAAA-A--AAT-N---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
gi|1 : CAACAATTAATTTTTTACTGTT-CTACATA-TA--GA---GAAATGCACTTCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAG-----TCCTCTGTTGGTCCAATT-ATGCAG--AAA-AA--ACATGGGGTTGACCAGATTGCCTTTTCCACAACTTTGATGGTTTGGTGACA-TCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTACA-GTATATC-ACAATGCATCTTTAAACA-GTT-TTAG-CT-TCAACAAAC---AGTTCCCAGTTTC-AT-CCAAAC-TTG-GCAA-AA-A-TCATGA--AAATGTTCTAA--------TGTTT---T--CAT-A---T-GCAC----AAAGCATTATATAA-C-ATT-TTAT-GC-ATT-T-------T-----TAA--CAAATA--AAA-T---TGCCC-AA-ATGCTTTACACAGCTCTAATT-TCTTG--GGAGTAAAAAT----CTACCGGCATGTAA-GG-G-AG-GTAATTCTTAAGTGAG--ACC-T-AA---A-A
gi|10 : ccCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCATATTCCCACAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCGGGTTG-CTTTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGTTCCCAGGGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATGA--AAATGTTCCAA--------TGTTC---C--CAT-A---T-GCAC----ATAGAA--ATATGA-C-ATT-TTAT-GC-ATT-T-------T-----TAA--AAAA-A--AAT-T---TACCC-AA-CCGCTTTACACAGCTCTAATT-TCTTG--GGCGTAATAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGTTCAGTGAG--ACC-T-TA---A-AT-------ATC--AATA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACAcgttctcatcatcggttgtgtcctgttaaacaattttacctgacttttccttattgtagctgacaatatataatatgaaataaggcactgcctaaaaggggatttatcaatttcaatcaatgtataattattatgtatatgtagattatttaatatcagtatgtcaggata
gi|11 : CACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGAACACATTGCC-AATGGTTCTGAAAGTGTCTTGTTTCCATAGAT-ATTCTTCTGCTAGTCCAAAT-ATGCAG-AAAA-AATTGC-TG----TGACCAGATTG-CTTTTTCACAATTTCGATGGTTTGGTGACA-CCTCTTAATTGTTTG-AC-AATTCCG-CCCATTTGTTGCA-GTGTATT-ACTACGCGTCTTTAAACT-GTT-ATAT-AT-TCACCTAAC---ACTTCCCAATGTC-GT-CAAAAC-TCG-GTAG-AA-C-TCTTTG--AAATGTTTCAA--------TGATC---T--CAT-A---T-GTAC----AAATAG--ATATGACC-GTT-TAAA-AT-ATT-T-------T-----CAA--CAAA-A--AATAA---TGCCC-AA-CCGATTTACACAGCTTTAGTT-TCTTG--GGCGCAATAAT-----TA---TCA---AG-GG-G-AG-GCAAATGGTAAGTGAG--ATT-TGTA---GTAG-------ATC--TGTG--TATAGA-CAGCATA-TAAC----AC
gi|12 : CACACACCAATTATTTTTGTATTGTT-CTGCATA-TAAAGA---GGCATGCACTCCTGGAACACTGAACACACTGAC-AATAATTCTTAAGGTGTCTTGTTTCCATAGAT-TTTCCTCCGTTAGTGTAAAT-AGGCAG-A----------------TTGA----------TATTTCACAATGTTGATGGTTTGATGACA-CTCCTTCATA-TTTT-ACAAATTTTG-CCCATTTGGTACA-GTGTATC-ACTACGCATCTTTAAATT-GTT-ATAT-AT-TTACC-AAC---AGTACCCAATGAC-AT-CCAAAC-TTG-GCAG-AA-C-TCATAA--AAATGTTCCAG--------TGTTC---T--CAT-A---T-GTAC----AA--AA--ATATGACC-ATT-GTAA-GC-ATT-T-------T-----CAC--CAGT-A--ATC-A---TGCCCAAA-TCGATTTTCACAGCTCTAATT-TCTTC--GGCGCAATAAT----CTA---------AG-GG-G-AG-GTAATTTGTTAGTAAA--ACC-TATA---A-Agtgtttgcaccatattatacatgataaccatg
gi|13 : tctTAATTTTATACTTTT-CCACATA-TA--GA---GACTTGCATTTCTGGAACACTGAACACAATATT-AATGGTTCTAAAAGTGTCCTGTTTCCATAGAT-TGTCCTCTGTTAGTCCAAAT-AGGCAG-GACA-AA--ACATGGGGTTGACCAGATTG-CTTTTTCACAATGTCAATGGTTTTTTGACA-CCCCTTCATT-TTCA-AC-AATTCTG-CCCA--TAATGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCAAC---AGTTCTCAATATG-AT-CCAAAC-TTG-GCAG-AA-T-TCATTA--AAATGTTACAA--------TGTTC---T--CAT-A---T-GTAT----AAAGAA--ATATGA-CTACT-TTAA-GA-ATT-T-------T-----CAA--CAAA-A--CAT-A---TACTA-AA-CCGATTTACACAGTTCTAATT-TCTTA--GGCGCAATAA-----------TCAT--------G-AA-GTTATTGGTAAGTGAG--ATC-T-TA---A-atgtccctatcgtccagatgtgtcagatgtt
gi|14 : ACTGTT-CTACATA-TA--GA---CAAATGCACTTCTGGAATAC-------ATTACG-AATGGTTTTAAA-GTGCCTTGTTTCCATAGCT-AGTCCTCTGCTCGTCCAAAT-ATGCAG-AAAA-AA--AAA-GGGATTGACCAGGTTA-CTTTTTTACAATTTTGATGGTTTGATAAC
gi|14 : tcacatac-AC-CCAAATATCG-GCAG-AA-C-TCAAGA--CAATGTTCAAA--------TGTTC---T--CAT-T---C-GTAT----AAAGAA--ATATGA-C-ACTATTAT-GC-ATT-G-------G-----TAA--CTA-------------------AA-CCGAATTACACAGCTCTAGTT-TC--G--ATGGCAAGACTATTGCAACCGTCATGCAA-AG-A-AG-GTAATTCTTAAGTGAG--ACC-T-TA---A-AT-------AACAAGGTA--ccaaatatcggcagaactcaagacaatgttcaaatgttctcattcgtataaagaaatatgacactattatgcattggtaactaaaccgaattacacagctctagtttcgatggcaagactattgcaaccgtcatgcaaagaaggtaattcttaagtgagaccttaaataacaaggtaattgcaatgtagagtttggaaagtaacatta
gi|16 : tcacatacactgttctacatatagacaaatgcacttctggaatacattacgaatggttttaaagtgccttgtttccatagctagtcctctgctcgtccaaatatgcagaaaaaaaaagggattgaccaggttacttttttacaattttgatggtttgataCACACAACAATTAATTTTGTACTGTT-CTGCACA-TA--GA---TA-ATGCACTTCTGGAACACTGGATGCACTACC-AATCGTTCTAAAA---------------------GTCC-CTG--GATCC---C-AT-------AG-AA--ACATGGGGTT--CCAGGTTG-ATTTTTCACAATTCCAATGGTTTGATGGCA-CCCTTTCATA-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACCGCGCATCTTCTAACT-ATT-ATAG-CT-TCATCAAAattgcaatgtagagtttggaaagtaacatta
gi|16 : ctC----AAAGAA--ATATAA-C-ATG-TTAT-GC-ATT-T-------T-----CAA--CAAA-A--AAA-AAAATGACA-AA-GCGCTTTACACAGCTCTAATT-TCTCG--GGCGTAAGAATCTTGCTACCGTCATGTAA-GG-G-AG-ATAgaaatataacatgttatgcattttcaacaaaaaaaaaaatgacaaagcgctttacacagctctaatttctcgggcgtaagaatcttgctaccgtcatgtaagggagata
gi|17 : ctcacacaacaattaattttgtactgttctgcacatagataatgcacttctggaacactggatgcactaccaatcgttctaaaagtccctggatcccatagaaacatggggttccaggttgatttttcacaattccaatggtttgatggcaccctttcatatttgacaattctgcccatttgttgcagtgtatcaccgcgcatcttctaactattatagcttcatCACAC-AATTAATTTTGCACTGTT-CTACATA-TA--GA---GAAATGCACTTCTGGAACACTAT-CACCTTACT-AATGGCTGTAAAAGTGAATTGTTGACATATAT-AGTCCTCTGTTGGTACTAAT-GTGCAG-AACA-AA--ACATTGGGTTGACCAAGTTA-TTTTTTCACAGCTT-GATGGTTTGATGACA-CCCCTTAATT-TTCG-AC-ATTTCTGCCCCATTTGTTGCT-GTGTATC-ACTACGCATCTTTAAGCT-ATT-ATAC-CC-TCATCAAAC---AGTTCCCAGAGTC-AT-CAAAAC-TTG-GCAA-AA-C-TCATGG--AAATACTCCAC--------TGTTA---T--CATAA---T-GTAC----AAA
gi|18 : ct-T-TA---A-AT-------ATC--AATA--TATATATC-TTATAGTAAC----ACCAGATAA------ATAAGCATTATCGTACA
gi|19 : GCT-CTATACA-TA--GATCTAACGT----TCCTAGAACAC-------ATTGCC-AATTGTTCCAAAAGTGTCCTGTTTCCATAGAT-TGTCcctataaggcgtggactttccgtagtgcgtgtgaatttaacgtgacaccgtgcctaagttttgtttcatttggaggcttcgggtcgagctggggatcaaacacccaatctttgggttgagtggccaacactctgtcacactctactaccccgcttaaatttctgattttacttaaacatacattacacttatatactgagatgtatcatcgaattatattcttacgaaataacaaca
gi|19 : aAG-AA-C-ACATTGCCAATTGTTCCAAAAGTGTCCTGTTT---C--CAT-AGATT-GT-C----A--GAA--ATATGA-CCATT-TCAA-TC-ATT-T-------T-----CAA--CAAA-AATAAT-------CCT-GATCCAATTTACACAGCTCTAATT-TCTTG--AGCGCAATAATTTTGCAACTGTAACTAAA-GG-G-AG-GTAATTGGTAAGTGAG--ACC-T-TA---A-ACTAACACAATT--AATATTTATA-A-C--CATAATAACTTGAACTGGCTAAAATGTTATAACTATTGTTGTAagaaatatgaccatttcaatcattttcaacaaaaataatcctgatccaatttacacagctctaatttcttgagcgcaataattttgcaactgtaactaaagggaggtaattggtaagtgagaccttaaactaacacaattaatatttataaccataataacttgaactggctaaaatgttataactattgttgtaacactaagttgtaa
gi|2 : agctctatacatagatctaacgttcctCACATAACAATTAATTTTGAACTGTT-CTACATA-TA--GA---GACATTCAATTTTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAGAT-AGTCCTCTGTTTGACCAATT-ATGCAGAAAAA-AA--ACATGGGGTTGAGCAGG-TG-GTTTTTCACAATTTCGATGGTTTGATGGCACCCCCTTCATC-TTTG-AC-AAGTCTG-ATCATTTGTTGCA-GTCTGTC-ACTCCGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAC---AGTTCCCACTGTA-AT-CCAAAC-TTG-GCAT-AA-A-TCATGA--AAATGTTCCCA--------TGTTC---C--CAT-A---T-GCAC----AAAGAA----ATGA-C-ATT-TTAT-GC-ATT-T-------T-----TAA--CAAA-A--AAA-A---TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTA--GGCGTAAGAATCTT--T-CCGTCATGGAA-GG-G-AG-GTAATTCTTAAGAGAG--ACG-TATA---A-GT-------ATA--GTTA--CATacactaagttgtaa
gi|20 : acagattgttaaacatatgatgacttacatacttgaacgtctTGCATGTAGATC-ACTACCTATCTTTACATTAGTA-ATGT--T-TCATCAAAC---AGTACTCAATGTC-GT-CCAAAC-TTG-GCAG-AA-T-TCACGA--ATATCTTCTAA--------TGTTC---T--CAT-A---C-GTAC----ACAGAA--ATATGA-CAACT-TCAT-GC-ATT-T-------T-----CAA--CAAA-A--AATGA---TGCCC-AA-CCGATTCACACGTGTCTAATT-TCTTT--AGCGTAATAATCT---TACCGTCATGTAA-GG-G-AG-GTTATTCTTAAATGAG--ACCTT-TAAGCA-AT-------AAT--GGTA--TATA-gttcttaaacaagtatgtttggcatagtacttgtaacatttcttaaaaacttttcgtatttatttcgaatttgtttt
gi|21 : AACT-ATTGACATTCTGTCATCCAACGAAAGCT-----TACC-ATACCAGGC-TTAAGCAA-AAACATCATGA--AAAGATTCCAG--------TGTTC---T--CAT-T---T-GTGC----GAAGAA--ATATGA-C-AAG-TTAATGG-ATT-T-------T-----CAG--CAAA-A--ATA-A---AGCCC-AG-CCGATTTACACAGCTCTAATT-AATTG--GGCGTTAAAATCGTCCAACCATCATGTAA-GG-G-AG-GTAATTCTTAAGTGAGATACC-T-TA---A-catgtacgtagaaggtattggtg
gi|22 : ACATAACATTTAATTTTGT-CTGTT-CTACACA-TA--GA---GAAATTCACTTCTGGACCACTGGACACACTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGTTTCAATT-ACGCAG-AAAAGAA--ACATGG---TGACCATGATG-CTTTTTCACAATTTTGGTAGTTTGATGACA-CCCCTTTATT-TATG-AA-AATTCTG-CCCATTTGTTGCA-ATGTATT-ACAATGCATCTTgcaaacaaaagccatgtacacaaattagtgttacatgtac
gi|23 : ACCAAAC---ACATACCAAGATC-GT-CCAAACCTTT-CCAATAG-CATTATGC--A--TGTTCCAA--------T--TC---TGCCAA-C---C-GCAG----CCATAA--ATATGA-------TTGA-GCTATA-T-------T----------CAAA-T--ACT-A---TGACA-AA-CCGCTTGGCACAA---TAATTATTTCGCTGGTGCAAAGGTCTTCTTACCGTT-TCCAA-GG-A-AA-GTAAATGATAAGCGAA--A
gi|24 : ATGTCTCT-CCAAAC-CTG-TCAG-AA-C-TCGTGC--AAATGTTTTAA-----------TC---TA-CAT-A-------ACTTTTAAATAA--ACCTAATC-ATT-TTAA-GC-TTT-TTCTTTTAT-----CAAATCAAA-C--AAT-C-----CCC-AA-CCTATATACATACTTCTCTTT-CCTCG--GGCACA
gi|25 : acatgcaatatatCAG-AG-T-TCATTA--GAAGATTCTAA--------TCTTTCCTT--CTT-A---T-G------------A--ATAT---T-ATC-TTTG-GA-ATA-A-------T-----TGA--CAAA--------C---TGCT--AA--------ACACAATTCTAGTT-TCTCT--TGTACAAGAGTCTTCCTCTCATTATCTAG-GG-G-AG-GTTATTGTTCAGGGAC--ACT-T-tg
gi|26 : aCACACACCAATTAATTTTGTACTGTT-ATACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTCCCATAGAT-AGTCCTCTGTTGGTCCAAAT-A
gi|28 : tctTTTGTATTGTT-CTACATAGTA--------ACATACACTTCTGGAACACTGAACACATTGTG-GATGGTTCTAAAAGTGTCTTGTTTCTAAACAT-TGTCCTCTGTTAGTCCAAAT-ATTCA
gi|3 : aggCACACACCAATTAATTATGTACTGTT-CTACATA-TA--GA---GACATGCACATCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTTCCATAGAA-AGTCCTCTGTTGGTCCAAGT-ATGCAG-AAAA-AA--A--TGGGGTTGATTAGGTTG-CTTTTTCACAATTACGATGGTTTGATGGCA-CCCTTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACACATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGATCTCAATGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATAA--AAATGTTCCAA--------TGTTC---C--CAT-A---T-GCAT----AAAGAA--ATATGA-C-ATT-ATAT-GC-ATTAT-------TTTTTGCAA--CAAA-A------T---TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTT--GGCGTAATAATCTTGCTTCTGTCATGTAA-GG-G-AG-GTAATTCTTCAGTGAG--ACC-T-TG---A-A
gi|33 : ctAATCTTGCTACCGTCAT-TAA-GG-G-GGTGCAAATGGTAAGTGAT--ACgagtagaaattgtcatgagatgtgactcaaatttttgtcaaacaaacctttaccatttcttaatataaaaatatgccttttaaattcatcgcgcaattgttttcgaatccatgcaccaaaa
gi|34 : aCACACACCAATTAATTTTGCACTGTT-TTACATT-TA--GA---GA
gi|35 : ctATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAGCATTAATGTACAt
gi|36 : TGCTTCCGTCAC-TAA-GGAG-AG-ATACTTGGTAAGTGAA--ACC-
gi|37 : ATA-A-C-TGAAAGTAAC----ACCAGATAA------ATAAGAATTATTGTA
gi|38 : ATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAATATTATTGT
gi|39 : AA-GG-G-AG-GTAATTGGTAAGTTAG--ACC-T-TA---A-A
gi|4 : aCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GCCATGCGCTTCTGGAACACTGAACACATTGCC-AATGGTTCTAAAAGTGTATTGTTTCCATAGAA-TGTCCTCTGTTAGTCCAAAT-ATACAG-AAGA-AA--ACATGGGATTGACCAGGTTG-CTGTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-ATTTCTG-CCAAGTTGTGGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCCAC---ATAACACAATGTC-AT-CTAAAC-TTG-GCAG-GA-C-TCGTGA--AAATGGTTCAC--------TGTTC---T--CAT-C---T-GTAC----AAAGAA--ATATGATT-ATT-TTAA-GC-ATT-T-------T-----CAA--CAAA-AT-AAT-G--------------------CATATCTCTGTTT-TCTTG--GGCGCATTAATATTGCTTTCGTCAC-TAAGGG-G-AG-CTAATTGGTAAGTGAG--ACA-T-CATAGG-AT-------ATT--CGTG--TTTA-A-C--TATAct
gi|5 : CACACACCAATTAATTTTCCACTGTT-CTACATA-TA--GA-----CATGCACTTCTGTAACACTGAATACACTGTC-AATAGTTCTAAAAATGTCTTGTTTCCATAGAA-TGTCCTCTGTTAGTCCACAT-ATGCAG-GAAA-AA---CATGGGGTTGACCACATTG-CTTTTTCATTATTTTGATGTGTTGATGACA-CCCCTTCATT-TTTG-AC-AATTTTG-CCCATTTGTTGCT-GTGTATCCACTACGCATCTTTAAACT-GTT-ATAT-CT-TCACCCAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAGTGTTCCAA--------TGTTC---T--CAT-T---T-GTAC----AAAGAA--ATATGACC-ATT-TTAA-GC-ATT-T-------T-----CAT--CAAA-ACTGAT-T-----CCC-AA-CCGATTTACACAGCTCTAATT-TCTTA--GCCGCA--------GTTATC-------------------TAATTGGTAAGTGAG--ACA-T-Tcacaatctgtagctattgacattgaaccatctgtggatgaaaggcaatacattgcataatatcaattataattgtatatggcattcagttcaatatcgtcggataa
gi|6 : gctgaaccacttcctaccagatcgatatatgaaaatacagtttacgtctCTGTT-CTATACAATA--GA---AAGATGCACTTCAGTAATGCTGAACACATT------TGGTTCTAAAAGTGTCTT-TCTCCATTAAT-AGTCCTCTATTGACCCAACTTATGCAC-AAAA-AA--ACTTGTAGTTGACCAGAT-G-CTTTTT-ATAATTT--------TGATGATA-CCCCTTTATT-TTTG-AC-AATTTTG-CCCATTAGTTGCA-TTTTATC-ACTACGAATCTTTAAACT-GTT-ATAT-CT-TCATCCAAC---TATAGCCACTGCC-AT-ACAAAC-TTG-GCAG-AA-T-TCATGC--AAATATTCCAA--------TGTTC---T--CAT-A---T-GTAC----AAAGAA--ATATGATC-ATT-TTAA-GC-A-T-T-------T-----CAA--CAAA-A--ATA-A---TG-GC-AA-CTTATTTATATAGCCCTTATT-GCTTG--GGCGATATAATCTCGATACTGTCAC-TAA-GG-GAAG-GTAATTCGTAAGTGAtggcggttttctattctagaaataaaaaatgaatatattacacattttagtcacaatatttaatatacatgtatgtagatatggagtttata
gi|7 : ctcagtctctttctacgaagtcacatcataacgtatccagattattctcgtcttacatacatttaccaaaataatTTTTGCACTGTTTCTACATA-TA--GA---GAAATGTACTTCTGGAACACTGAACACATTATCAAACGGTTCTAAAGATGTC-TGTTTTCAcattttcttacaaatgtgacagctgcatacacgtgtgtatattgtaattaacgctaatg
gi|7 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttAGATTA-CTTTTTCACAATTTCAATGGTTTGATGTCA-CCCTTTAATT-TTTTTAC-AAGTCTA-CACAATTGTTGCA-GTGTATC-ACTACGCATCTTCAAACT-GCT-ATAC-AT-GCATCTAAC---AGCTGCCAATGCC-AT-CCAAAT-GTT-GAAG-AG-C-TCGTGA--AAATGTTTCAG--------T-TTG---C--CA--A---TCGGAC-------------------C-GTT-TTAA-AC-ATT-T-------G-----CAA--CACA-A--AAT-A---CACCC-AC-TCAATTTACACAGCGTTAGTT-TCTTT--GGCGCAAGAATCATGCTACCGTCATTAAA-GG-G-AA-ATAATTGGTAAGTGAA--ACC-T-TC---A-AT--------------CA--TAAA-A-C---ATAGTggttaaacagaaagattactttttcacaatttcaatggtttgatgtcaccctttaatttttttacaagtctacacaattgttgcagtgtatcactacgcatcttcaaactgctatacatgcatctaacagctgccaatgccatccaaatgttgaagagctcgtgaaaatgtttcagtttgccaatcggaccgttttaaacatttgcaacacaaaatacacccactcaatttacacagcgttagtttctttggcgcaagaatcatgctaccgtcattaaagggaaataattggtaagtgaaaccttcaatcataaaacatagtgtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|8 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttttttgcactgtttctacatatagagaaatgtacttctggaacactgaacacattatcaaacggttctaaagatgtctgttttcaggttaaacagaaCAATGAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGGATACATTACC-AATGTTTCTAAAAGTGCTTTATTCCCACAGAT-AGTCCTCTGTTGGTCCAATT-ATGCAG-AAAA--A--ACATGGAGTTGACCAGGTGG-CTTTTTCACAATTTTGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATACTT-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAT---AGTTCCCAATGTC-AT-CCAAAT-TTG-ACAA-AA-A-TCATGA--AATTGTTCCAA--------TGTTC---C--CAT-A---T-GCAA----AAAGAA--ATATGA-C-ATT-TTAT-GC-ATT-T-------T-----TAA--CAAA-AT-AAT-----TGCCC-AA-CCATTTTACACAGCTCTAA-T-TCTTG--G-------------GCTACCATCATGTGA-GG-G-AG-GTAATTCTAAAGTGAG--ACC-TATA---G-AT-------gtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|9 : aaACACAACAACTAATTTTGCACTGTT-CTCCGTA-TA--GA---GAAGCGCACTTCTGGAACACTGGATATATAACC-AATGTTTCAAAAAGGGCCTTGTTCACATGGATAAGTCCTCTGTTGGT-CAAAT-ATACAG-GAAA-CA--ACTT--GGTTGATAAGGATG-CTTTTTCACAATTTCAATGGTTTGATGACA-TCTCTTCATT-TTTG-AC-AATTGTA-CCCA-TTGTTGAA-ATTAATC-ACT--GTATCAT------------TAC-CT-T-------------------ATGTC-AT-CCAAAC-TTG-GTA-----------GA--AAATGTTCAAA--------TGTTC---T--CAT-A---T-GTAC----AAAGAA--ATAAGA-CAATT-TTAT-GC-ATT-T-------T-----CAA--CAAA-A--AATAA---TGCCC-AA-TTGGTTT--TCAGTTCTAATT-TCTTG--GGCGCAAAGATCTTGCCACTGCCATGTAA-AG-G-AG-ATAATTCTTAAGTGAG--ACC-T-Tccattttcgtgaataaatacaatttatttgtcctatgatgtgaagtaaatacataattatattgtatatgaacaacttacaatgttgatggatat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATATTTTATGTAGCTCACCCAATTGAGCTTGCATGTGGAGCACGTGGTCCAGCATCAAACCAACGGTCGGAGCGTTCGATTCTCCCACACGACCATGTGTAGTGTCCATGACCTTTTTCTTCATTATATTTAGAGCTGGTTCTACACAGGAAAACTTCGAACGTGACGTGTATACGTTGTGATAGTTTCACAATCGAAGTAAAATAAATGAGTTTAAACTCACTCACACGTCTCGCTTGATCACTGAAATAGGAAACATCTGTACTGTGATTCCTATAACTTCTCTTTATTACAAAATTACCAGAAACTGCGGCATCTTCGTAGTACAACGGTTATCAATATCTTGTCTTTATAGCGGTTT
Unaligned ( gi|27 ): GAGTAGAAATTGTCATGACATGTGACTGAAAATTTTGTCGAACAAACCTTTACCATTTCTAAATATAAAAGTACGCCTTTTGAATTCATCGCGCAACTGTTTTCGAATTCATGCACCAAAA
Unaligned ( gi|29 ): AAAAACCACAACATTTTAGATATAAGGTTTACATCTTAAAAATCGTCTTTGAATACCAAGGGTAATCC
Unaligned ( gi|30 ): AATGTAATAATGCAATTAAAATATAATCAAATAAAACGGACACCTGTCATTTTTCTA
Unaligned ( gi|31 ): TAGATAAGTGTCATTGTACGCCGATAAAGCGTGGAGTTGCAATAGTGCGTGTGAA
Unaligned ( gi|32 ): CATACGGCGTGGACTTTCCGTAGTGCTTGTGAATCTAACGTGACACCGGGCTA
Alignments
lowQualScore : 111 111111 22222222222222 11 1111 111111
lowQualScore : 1 3 22 333 1 0 2 33 0 2 2 2 33 0 2 1 2 2 2 2 2 0 2 2 2 2 33 2 4 444 2 2 4 2 2 555 22 77777777 44 2 333 2 4444 22 333 2 33 555 4444 44 22 2 222222 2 2 1 1 22 2 5555 99 1 1 1 1 22 22 2 8 888 2 00000000000000 66 8 4 44 2222 999999
lowQualScore : . . .. ... . . . .. . . . . .. . . . . . . . . . . . . . .. . . ... . . . . . ... .. ........ .. . ... . .... .. ... . .. ... .... .. .. . ...... . . . . .. . .... .. . . . . .. .. . . ... . .............. .. . . .. .... ......
lowQualScore : 9 8 66 333 2 1 0 88 3 2 5 5 44 3 4 5 5 5 5 5 5 2 4 4 4 4 44 4 6 111 1 1 2 1 0 999 88 22222222 88 0 555 0 0000 88 333 0 00 555 2222 88 88 0 555555 0 0 4 9 66 4 9999 55 7 7 7 7 44 66 0 4 888 5 44444444444444 11 0 4 44 1111 222222
consensus : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
Reference ( family-335 ) : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
gi|1 : CAACAATTAATTTTTTACTGTT-CTACATA-TA--GA---GAAATGCACTTCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAG-----TCCTCTGTTGGTCCAATT-ATGCAG--AAA-AA--ACATGGGGTTGACCAGATTGCCTTTTCCACAACTTTGATGGTTTGGTGACA-TCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTACA-GTATATC-ACAATGCATCTTTAAACA-GTT-TTAG-CT-TCAACAAAC---AGTTCCCAGTTTC-AT-CCAAAC-TTG-GCAA-AA-A-TCATGA--AAATGTTCTAA--------TGTTTT--CAT-A---T-GCAC----AAAGCATTATATAA-C-ATT-TTAT-GC---ATTTTT----AACAAATA--A-AAT-----TGCCC-AA-ATGCTTTACACAGCTCTAATT-TCTTG--GGAGTAAAAAT----CTACCGGCATGTAA-GG-G-AG-GTAATTCTTAAGTGAG--ACC-T-AA---A-A
gi|10 : ccCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCATATTCCCACAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCGGGTTG-CTTTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGTTCCCAGGGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATGA--AAATGTTCCAA--------TGTTCC--CAT-A---T-GCAC----ATAGAA--ATATGA-C-ATT-TTAT-GC---ATTTTT----AAAAA--A--A-AAT-T---TACCC-AA-CCGCTTTACACAGCTCTAATT-TCTTG--GGCGTAATAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGTTCAGTGAG--ACC-T-TA---A-AT-------ATC--AATA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACAcgttctcatcatcggttgtgtcctgttaaacaattttacctgacttttccttattgtagctgacaatatataatatgaaataaggcactgcctaaaaggggatttatcaatttcaatcaatgtataattattatgtatatgtagattatttaatatcagtatgtcaggata
gi|11 : CACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGAACACATTGCC-AATGGTTCTGAAAGTGTCTTGTTTCCATAGAT-ATTCTTCTGCTAGTCCAAAT-ATGCAG-AAAA-AATTGC-TG----TGACCAGATTG-CTTTTTCACAATTTCGATGGTTTGGTGACA-CCTCTTAATTGTTTG-AC-AATTCCG-CCCATTTGTTGCA-GTGTATT-ACTACGCGTCTTTAAACT-GTT-ATAT-AT-TCACCTAAC---ACTTCCCAATGTC-GT-CAAAAC-TCG-GTAG-AA-C-TCTTTG--AAATGTTTCAA--------TGATCT--CAT-A---T-GTAC----AAATAG--ATATGACC-GTT-TAAA-AT---ATTTTC----AACAA--A--A-AATAA---TGCCC-AA-CCGATTTACACAGCTTTAGTT-TCTTG--GGCGCAATAAT-----TA---TCA---AG-GG-G-AG-GCAAATGGTAAGTGAG--ATT-TGTA---GTAG-------ATC--TGTG--TATAGA-CAGCATA-TAAC----AC
gi|12 : CACACACCAATTATTTTTGTATTGTT-CTGCATA-TAAAGA---GGCATGCACTCCTGGAACACTGAACACACTGAC-AATAATTCTTAAGGTGTCTTGTTTCCATAGAT-TTTCCTCCGTTAGTGTAAAT-AGGCAG-A----------------TTGA----------TATTTCACAATGTTGATGGTTTGATGACA-CTCCTTCATA-TTTT-ACAAATTTTG-CCCATTTGGTACA-GTGTATC-ACTACGCATCTTTAAATT-GTT-ATAT-AT-TTACC-AAC---AGTACCCAATGAC-AT-CCAAAC-TTG-GCAG-AA-C-TCATAA--AAATGTTCCAG--------TGTTCT--CAT-A---T-GTAC----AA--AA--ATATGACC-ATT-GTAA-GC---ATTTTC----ACCAG--T--A-ATC-A---TGCCCAAA-TCGATTTTCACAGCTCTAATT-TCTTC--GGCGCAATAAT----CTA---------AG-GG-G-AG-GTAATTTGTTAGTAAA--ACC-TATA---A-Agtgtttgcaccatattatacatgataaccatg
gi|13 : tctTAATTTTATACTTTT-CCACATA-TA--GA---GACTTGCATTTCTGGAACACTGAACACAATATT-AATGGTTCTAAAAGTGTCCTGTTTCCATAGAT-TGTCCTCTGTTAGTCCAAAT-AGGCAG-GACA-AA--ACATGGGGTTGACCAGATTG-CTTTTTCACAATGTCAATGGTTTTTTGACA-CCCCTTCATT-TTCA-AC-AATTCTG-CCCA--TAATGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCAAC---AGTTCTCAATATG-AT-CCAAAC-TTG-GCAG-AA-T-TCATTA--AAATGTTACAA--------TGTTCT--CAT-A---T-GTAT----AAAGAA--ATATGA-CTACT-TTAA-GA---ATTTTC----AACAA--A--A-CAT-A---TACTA-AA-CCGATTTACACAGTTCTAATT-TCTTA--GGCGCAATAA-----------TCAT--------G-AA-GTTATTGGTAAGTGAG--ATC-T-TA---A-atgtccctatcgtccagatgtgtcagatgtt
gi|14 : ACTGTT-CTACATA-TA--GA---CAAATGCACTTCTGGAATAC-------ATTACG-AATGGTTTTAAA-GTGCCTTGTTTCCATAGCT-AGTCCTCTGCTCGTCCAAAT-ATGCAG-AAAA-AA--AAA-GGGATTGACCAGGTTA-CTTTTTTACAATTTTGATGGTTTGATAAC
gi|14 : tcacatac-AC-CCAAATATCG-GCAG-AA-C-TCAAGA--CAATGTTCAAA--------TGTTCT--CAT-T---C-GTAT----AAAGAA--ATATGA-C-ACTATTAT-GC---ATTGGT----AAC-----------T-A---------AA-CCGAATTACACAGCTCTAGTT-TC--G--ATGGCAAGACTATTGCAACCGTCATGCAA-AG-A-AG-GTAATTCTTAAGTGAG--ACC-T-TA---A-AT-------AACAAGGTA--ccaaatatcggcagaactcaagacaatgttcaaatgttctcattcgtataaagaaatatgacactattatgcattggtaactaaaccgaattacacagctctagtttcgatggcaagactattgcaaccgtcatgcaaagaaggtaattcttaagtgagaccttaaataacaaggtaattgcaatgtagagtttggaaagtaacatta
gi|16 : tcacatacactgttctacatatagacaaatgcacttctggaatacattacgaatggttttaaagtgccttgtttccatagctagtcctctgctcgtccaaatatgcagaaaaaaaaagggattgaccaggttacttttttacaattttgatggtttgataCACACAACAATTAATTTTGTACTGTT-CTGCACA-TA--GA---TA-ATGCACTTCTGGAACACTGGATGCACTACC-AATCGTTCTAAAA---------------------GTCC-CTG--GATCC---C-AT-------AG-AA--ACATGGGGTT--CCAGGTTG-ATTTTTCACAATTCCAATGGTTTGATGGCA-CCCTTTCATA-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACCGCGCATCTTCTAACT-ATT-ATAG-CT-TCATCAAAattgcaatgtagagtttggaaagtaacatta
gi|16 : ctC----AAAGAA--ATATAA-C-ATG-TTAT-GC---ATTTTC----AACAA--A--A-AAA-AAAATGACA-AA-GCGCTTTACACAGCTCTAATT-TCTCG--GGCGTAAGAATCTTGCTACCGTCATGTAA-GG-G-AG-ATAgaaatataacatgttatgcattttcaacaaaaaaaaaaatgacaaagcgctttacacagctctaatttctcgggcgtaagaatcttgctaccgtcatgtaagggagata
gi|17 : ctcacacaacaattaattttgtactgttctgcacatagataatgcacttctggaacactggatgcactaccaatcgttctaaaagtccctggatcccatagaaacatggggttccaggttgatttttcacaattccaatggtttgatggcaccctttcatatttgacaattctgcccatttgttgcagtgtatcaccgcgcatcttctaactattatagcttcatCACAC-AATTAATTTTGCACTGTT-CTACATA-TA--GA---GAAATGCACTTCTGGAACACTAT-CACCTTACT-AATGGCTGTAAAAGTGAATTGTTGACATATAT-AGTCCTCTGTTGGTACTAAT-GTGCAG-AACA-AA--ACATTGGGTTGACCAAGTTA-TTTTTTCACAGCTT-GATGGTTTGATGACA-CCCCTTAATT-TTCG-AC-ATTTCTGCCCCATTTGTTGCT-GTGTATC-ACTACGCATCTTTAAGCT-ATT-ATAC-CC-TCATCAAAC---AGTTCCCAGAGTC-AT-CAAAAC-TTG-GCAA-AA-C-TCATGG--AAATACTCCAC--------TGTTAT--CATAA---T-GTAC----AAA
gi|18 : ct-T-TA---A-AT-------ATC--AATA--TATATATC-TTATAGTAAC----ACCAGATAA------ATAAGCATTATCGTACA
gi|19 : GCT-CTATACA-TA--GATCTAACGT----TCCTAGAACAC-------ATTGCC-AATTGTTCCAAAAGTGTCCTGTTTCCATAGAT-TGTCcctataaggcgtggactttccgtagtgcgtgtgaatttaacgtgacaccgtgcctaagttttgtttcatttggaggcttcgggtcgagctggggatcaaacacccaatctttgggttgagtggccaacactctgtcacactctactaccccgcttaaatttctgattttacttaaacatacattacacttatatactgagatgtatcatcgaattatattcttacgaaataacaaca
gi|19 : aAG-AA-C-ACATTGCCAATTGTTCCAAAAGTGTCCTGTTTC--CAT-AGATT-GT-C----A--GAA--ATATGA-CCATT-TCAA-TC---ATTTTC----AAC-A--A--A-AAT-A---ATCCT-GATCCAATTTACACAGCTCTAATT-TCTTG--AGCGCAATAATTTTGCAACTGTAACTAAA-GG-G-AG-GTAATTGGTAAGTGAG--ACC-T-TA---A-ACTAACACAATT--AATATTTATA-A-C--CATAATAACTTGAACTGGCTAAAATGTTATAACTATTGTTGTAagaaatatgaccatttcaatcattttcaacaaaaataatcctgatccaatttacacagctctaatttcttgagcgcaataattttgcaactgtaactaaagggaggtaattggtaagtgagaccttaaactaacacaattaatatttataaccataataacttgaactggctaaaatgttataactattgttgtaacactaagttgtaa
gi|2 : agctctatacatagatctaacgttcctCACATAACAATTAATTTTGAACTGTT-CTACATA-TA--GA---GACATTCAATTTTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAGAT-AGTCCTCTGTTTGACCAATT-ATGCAGAAAAA-AA--ACATGGGGTTGAGCAGG-TG-GTTTTTCACAATTTCGATGGTTTGATGGCACCCCCTTCATC-TTTG-AC-AAGTCTG-ATCATTTGTTGCA-GTCTGTC-ACTCCGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAC---AGTTCCCACTGTA-AT-CCAAAC-TTG-GCAT-AA-A-TCATGA--AAATGTTCCCA--------TGTTCC--CAT-A---T-GCAC----AAAGAA----ATGA-C-ATT-TTAT-GC---ATTTTT----AACAA--A--A-AAA-A---TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTA--GGCGTAAGAATCTT--T-CCGTCATGGAA-GG-G-AG-GTAATTCTTAAGAGAG--ACG-TATA---A-GT-------ATA--GTTA--CATacactaagttgtaa
gi|20 : acagattgttaaacatatgatgacttacatacttgaacgtctTGCATGTAGATC-ACTACCTATCTTTACATTAGTA-ATGT--T-TCATCAAAC---AGTACTCAATGTC-GT-CCAAAC-TTG-GCAG-AA-T-TCACGA--ATATCTTCTAA--------TGTTCT--CAT-A---C-GTAC----ACAGAA--ATATGA-CAACT-TCAT-GC---ATTTTC----AACAA--A--A-AATGA---TGCCC-AA-CCGATTCACACGTGTCTAATT-TCTTT--AGCGTAATAATCT---TACCGTCATGTAA-GG-G-AG-GTTATTCTTAAATGAG--ACCTT-TAAGCA-AT-------AAT--GGTA--TATA-gttcttaaacaagtatgtttggcatagtacttgtaacatttcttaaaaacttttcgtatttatttcgaatttgtttt
gi|21 : AACT-ATTGACATTCTGTCATCCAACGAAAGCT-----TACC-ATACCAGGC-TTAAGCAA-AAACATCATGA--AAAGATTCCAG--------TGTTCT--CAT-T---T-GTGC----GAAGAA--ATATGA-C-AAG-TTAATGG---ATTTTC----AGCAA--A--A-ATA-A---AGCCC-AG-CCGATTTACACAGCTCTAATT-AATTG--GGCGTTAAAATCGTCCAACCATCATGTAA-GG-G-AG-GTAATTCTTAAGTGAGATACC-T-TA---A-catgtacgtagaaggtattggtg
gi|22 : ACATAACATTTAATTTTGT-CTGTT-CTACACA-TA--GA---GAAATTCACTTCTGGACCACTGGACACACTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGTTTCAATT-ACGCAG-AAAAGAA--ACATGG---TGACCATGATG-CTTTTTCACAATTTTGGTAGTTTGATGACA-CCCCTTTATT-TATG-AA-AATTCTG-CCCATTTGTTGCA-ATGTATT-ACAATGCATCTTgcaaacaaaagccatgtacacaaattagtgttacatgtac
gi|23 : ACCAAAC---ACATACCAAGATC-GT-CCAAACCTTT-CCAATAG-CATTATGC--A--TGTTCCAA--------T--TCTGCCAA-C---C-GCAG----CCATAA--ATATGA-------TTGA-GCT--ATATT-------CAA--A--T-ACT-A---TGACA-AA-CCGCTTGGCACAA---TAATTATTTCGCTGGTGCAAAGGTCTTCTTACCGTT-TCCAA-GG-A-AA-GTAAATGATAAGCGAA--A
gi|24 : ATGTCTCT-CCAAAC-CTG-TCAG-AA-C-TCGTGC--AAATGTTTTAA-----------TCTA-CAT-A-------ACTTTTAAATAA--ACCTAATC-ATT-TTAA-GC---TTTTTCTTTTATCAA--ATCA-AACAA---TCCCC-AA-CCTATATACATACTTCTCTTT-CCTCG--GGCACA
gi|25 : acatgcaatatatACACAATTCTAGTT-TCTCT--TGTACAAGAGTCTTCCTCTCATTATCTAG-GG-G-AG-GTTATTGTTCAGGGAC--ACT-T-tg
gi|26 : acagagttcattagaagattctaatctttccttcttatgaatattatctttggaataattgacaaactgctaaCACACACCAATTAATTTTGTACTGTT-ATACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTCCCATAGAT-AGTCCTCTGTTGGTCCAAAT-A
gi|28 : tctTTTGTATTGTT-CTACATAGTA--------ACATACACTTCTGGAACACTGAACACATTGTG-GATGGTTCTAAAAGTGTCTTGTTTCTAAACAT-TGTCCTCTGTTAGTCCAAAT-ATTCA
gi|3 : aggCACACACCAATTAATTATGTACTGTT-CTACATA-TA--GA---GACATGCACATCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTTCCATAGAA-AGTCCTCTGTTGGTCCAAGT-ATGCAG-AAAA-AA--A--TGGGGTTGATTAGGTTG-CTTTTTCACAATTACGATGGTTTGATGGCA-CCCTTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACACATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGATCTCAATGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATAA--AAATGTTCCAA--------TGTTCC--CAT-A---T-GCAT----AAAGAA--ATATGA-C-ATT-ATAT-GCATTATTTTT----TGCAAC-A--A-AAT-----TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTT--GGCGTAATAATCTTGCTTCTGTCATGTAA-GG-G-AG-GTAATTCTTCAGTGAG--ACC-T-TG---A-A
gi|33 : ctAATCTTGCTACCGTCAT-TAA-GG-G-GGTGCAAATGGTAAGTGAT--ACgagtagaaattgtcatgagatgtgactcaaatttttgtcaaacaaacctttaccatttcttaatataaaaatatgccttttaaattcatcgcgcaattgttttcgaatccatgcaccaaaa
gi|34 : aCACACACCAATTAATTTTGCACTGTT-TTACATT-TA--GA---GA
gi|35 : ctATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAGCATTAATGTACAt
gi|36 : TGCTTCCGTCAC-TAA-GGAG-AG-ATACTTGGTAAGTGAA--ACC-
gi|37 : ATA-A-C-TGAAAGTAAC----ACCAGATAA------ATAAGAATTATTGTA
gi|38 : ATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAATATTATTGT
gi|39 : AA-GG-G-AG-GTAATTGGTAAGTTAG--ACC-T-TA---A-A
gi|4 : aCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GCCATGCGCTTCTGGAACACTGAACACATTGCC-AATGGTTCTAAAAGTGTATTGTTTCCATAGAA-TGTCCTCTGTTAGTCCAAAT-ATACAG-AAGA-AA--ACATGGGATTGACCAGGTTG-CTGTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-ATTTCTG-CCAAGTTGTGGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCCAC---ATAACACAATGTC-AT-CTAAAC-TTG-GCAG-GA-C-TCGTGA--AAATGGTTCAC--------TGTTCT--CAT-C---T-GTAC----AAAGAA--ATATGATT-ATT-TTAA-GC---ATTTTC----AACAA--A--A-TA--A---TG---------------CATATCTCTGTTT-TCTTG--GGCGCATTAATATTGCTTTCGTCAC-TAAGGG-G-AG-CTAATTGGTAAGTGAG--ACA-T-CATAGG-AT-------ATT--CGTG--TTTA-A-C--TATAct
gi|5 : CACACACCAATTAATTTTCCACTGTT-CTACATA-TA--GA-----CATGCACTTCTGTAACACTGAATACACTGTC-AATAGTTCTAAAAATGTCTTGTTTCCATAGAA-TGTCCTCTGTTAGTCCACAT-ATGCAG-GAAA-AA---CATGGGGTTGACCACATTG-CTTTTTCATTATTTTGATGTGTTGATGACA-CCCCTTCATT-TTTG-AC-AATTTTG-CCCATTTGTTGCT-GTGTATCCACTACGCATCTTTAAACT-GTT-ATAT-CT-TCACCCAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAGTGTTCCAA--------TGTTCT--CAT-T---T-GTAC----AAAGAA--ATATGACC-ATT-TTAA-GC---ATTTTC----ATCAA--A--A-CTG-A---TTCCC-AA-CCGATTTACACAGCTCTAATT-TCTTA--GCCGCA--------GTTATC-------------------TAATTGGTAAGTGAG--ACA-T-Tcacaatctgtagctattgacattgaaccatctgtggatgaaaggcaatacattgcataatatcaattataattgtatatggcattcagttcaatatcgtcggataa
gi|6 : gctgaaccacttcctaccagatcgatatatgaaaatacagtttacgtctCTGTT-CTATACAATA--GA---AAGATGCACTTCAGTAATGCTGAACACATT------TGGTTCTAAAAGTGTCTT-TCTCCATTAAT-AGTCCTCTATTGACCCAACTTATGCAC-AAAA-AA--ACTTGTAGTTGACCAGAT-G-CTTTTT-ATAATTT--------TGATGATA-CCCCTTTATT-TTTG-AC-AATTTTG-CCCATTAGTTGCA-TTTTATC-ACTACGAATCTTTAAACT-GTT-ATAT-CT-TCATCCAAC---TATAGCCACTGCC-AT-ACAAAC-TTG-GCAG-AA-T-TCATGC--AAATATTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGATC-ATT-TTAA-GC---A-TTTC----AACAA--A--A-ATA-A---TG-GC-AA-CTTATTTATATAGCCCTTATT-GCTTG--GGCGATATAATCTCGATACTGTCAC-TAA-GG-GAAG-GTAATTCGTAAGTGAtggcggttttctattctagaaataaaaaatgaatatattacacattttagtcacaatatttaatatacatgtatgtagatatggagtttata
gi|7 : ctcagtctctttctacgaagtcacatcataacgtatccagattattctcgtcttacatacatttaccaaaataatTTTTGCACTGTTTCTACATA-TA--GA---GAAATGTACTTCTGGAACACTGAACACATTATCAAACGGTTCTAAAGATGTC-TGTTTTCAcattttcttacaaatgtgacagctgcatacacgtgtgtatattgtaattaacgctaatg
gi|7 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttAGATTA-CTTTTTCACAATTTCAATGGTTTGATGTCA-CCCTTTAATT-TTTTTAC-AAGTCTA-CACAATTGTTGCA-GTGTATC-ACTACGCATCTTCAAACT-GCT-ATAC-AT-GCATCTAAC---AGCTGCCAATGCC-AT-CCAAAT-GTT-GAAG-AG-C-TCGTGA--AAATGTTTCAG--------T-TTGC--CA--A---TCGGAC-------------------C-GTT-TTAA-AC---ATTTGC----AACAC--A--A-AAT-A---CACCC-AC-TCAATTTACACAGCGTTAGTT-TCTTT--GGCGCAAGAATCATGCTACCGTCATTAAA-GG-G-AA-ATAATTGGTAAGTGAA--ACC-T-TC---A-AT--------------CA--TAAA-A-C---ATAGTggttaaacagaaagattactttttcacaatttcaatggtttgatgtcaccctttaatttttttacaagtctacacaattgttgcagtgtatcactacgcatcttcaaactgctatacatgcatctaacagctgccaatgccatccaaatgttgaagagctcgtgaaaatgtttcagtttgccaatcggaccgttttaaacatttgcaacacaaaatacacccactcaatttacacagcgttagtttctttggcgcaagaatcatgctaccgtcattaaagggaaataattggtaagtgaaaccttcaatcataaaacatagtgtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|8 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttttttgcactgtttctacatatagagaaatgtacttctggaacactgaacacattatcaaacggttctaaagatgtctgttttcaggttaaacagaaCAATGAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGGATACATTACC-AATGTTTCTAAAAGTGCTTTATTCCCACAGAT-AGTCCTCTGTTGGTCCAATT-ATGCAG-AAAA--A--ACATGGAGTTGACCAGGTGG-CTTTTTCACAATTTTGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATACTT-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAT---AGTTCCCAATGTC-AT-CCAAAT-TTG-ACAA-AA-A-TCATGA--AATTGTTCCAA--------TGTTCC--CAT-A---T-GCAA----AAAGAA--ATATGA-C-ATT-TTAT-GC---ATTTTT----AACAA--A--ATAAT-----TGCCC-AA-CCATTTTACACAGCTCTAA-T-TCTTG--G-------------GCTACCATCATGTGA-GG-G-AG-GTAATTCTAAAGTGAG--ACC-TATA---G-AT-------gtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|9 : aaACACAACAACTAATTTTGCACTGTT-CTCCGTA-TA--GA---GAAGCGCACTTCTGGAACACTGGATATATAACC-AATGTTTCAAAAAGGGCCTTGTTCACATGGATAAGTCCTCTGTTGGT-CAAAT-ATACAG-GAAA-CA--ACTT--GGTTGATAAGGATG-CTTTTTCACAATTTCAATGGTTTGATGACA-TCTCTTCATT-TTTG-AC-AATTGTA-CCCA-TTGTTGAA-ATTAATC-ACT--GTATCAT------------TAC-CT-T-------------------ATGTC-AT-CCAAAC-TTG-GTA-----------GA--AAATGTTCAAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATAAGA-CAATT-TTAT-GC---ATTTTC----AACAA--A--A-AATAA---TGCCC-AA-TTGGTTT--TCAGTTCTAATT-TCTTG--GGCGCAAAGATCTTGCCACTGCCATGTAA-AG-G-AG-ATAATTCTTAAGTGAG--ACC-T-Tccattttcgtgaataaatacaatttatttgtcctatgatgtgaagtaaatacataattatattgtatatgaacaacttacaatgttgatggatat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATATTTTATGTAGCTCACCCAATTGAGCTTGCATGTGGAGCACGTGGTCCAGCATCAAACCAACGGTCGGAGCGTTCGATTCTCCCACACGACCATGTGTAGTGTCCATGACCTTTTTCTTCATTATATTTAGAGCTGGTTCTACACAGGAAAACTTCGAACGTGACGTGTATACGTTGTGATAGTTTCACAATCGAAGTAAAATAAATGAGTTTAAACTCACTCACACGTCTCGCTTGATCACTGAAATAGGAAACATCTGTACTGTGATTCCTATAACTTCTCTTTATTACAAAATTACCAGAAACTGCGGCATCTTCGTAGTACAACGGTTATCAATATCTTGTCTTTATAGCGGTTT
Unaligned ( gi|27 ): GAGTAGAAATTGTCATGACATGTGACTGAAAATTTTGTCGAACAAACCTTTACCATTTCTAAATATAAAAGTACGCCTTTTGAATTCATCGCGCAACTGTTTTCGAATTCATGCACCAAAA
Unaligned ( gi|29 ): AAAAACCACAACATTTTAGATATAAGGTTTACATCTTAAAAATCGTCTTTGAATACCAAGGGTAATCC
Unaligned ( gi|30 ): AATGTAATAATGCAATTAAAATATAATCAAATAAAACGGACACCTGTCATTTTTCTA
Unaligned ( gi|31 ): TAGATAAGTGTCATTGTACGCCGATAAAGCGTGGAGTTGCAATAGTGCGTGTGAA
Unaligned ( gi|32 ): CATACGGCGTGGACTTTCCGTAGTGCTTGTGAATCTAACGTGACACCGGGCTA
Alignments
lowQualScore : 111 111111 22222222222222 11 1111 111111
lowQualScore : 1 3 22 333 1 0 2 33 0 2 2 2 33 0 2 1 2 2 2 2 2 0 2 2 2 2 33 2 4 444 2 2 4 2 2 555 22 77777777 44 2 333 2 4444 22 333 2 33 555 4444 44 22 2 222222 2 2 1 1 22 2 5555 99 1 1 1 1 22 22 2 8 888 2 00000000000000 66 8 4 44 2222 999999
lowQualScore : . . .. ... . . . .. . . . . .. . . . . . . . . . . . . . .. . . ... . . . . . ... .. ........ .. . ... . .... .. ... . .. ... .... .. .. . ...... . . . . .. . .... .. . . . . .. .. . . ... . .............. .. . . .. .... ......
lowQualScore : 9 8 66 333 2 1 0 88 3 2 5 5 44 3 4 5 5 5 5 5 5 2 4 4 4 4 44 4 6 111 1 1 2 1 0 999 88 22222222 88 0 555 0 0000 88 333 0 00 555 2222 88 88 0 555555 0 0 4 9 66 4 9999 55 7 7 7 7 44 66 0 4 888 5 44444444444444 11 0 4 44 1111 222222
consensus : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
Reference ( family-335 ) : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
gi|1 : CAACAATTAATTTTTTACTGTT-CTACATA-TA--GA---GAAATGCACTTCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAG-----TCCTCTGTTGGTCCAATT-ATGCAG--AAA-AA--ACATGGGGTTGACCAGATTGCCTTTTCCACAACTTTGATGGTTTGGTGACA-TCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTACA-GTATATC-ACAATGCATCTTTAAACA-GTT-TTAG-CT-TCAACAAAC---AGTTCCCAGTTTC-AT-CCAAAC-TTG-GCAA-AA-A-TCATGA--AAATGTTCTAA--------TGTTTT--CAT-A---T-GCAC----AAAGCATTATATAA-C-ATT-TTAT-GC---ATTTTT----AACAAATA--A-AAT-----TGCCC-AA-ATGCTTTACACAGCTCTAATT-TCTTG--GGAGTAAAAAT----CTACCGGCATGTAA-GG-G-AG-GTAATTCTTAAGTGAG--ACC-T-AA---A-A
gi|10 : ccCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCATATTCCCACAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCGGGTTG-CTTTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGTTCCCAGGGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATGA--AAATGTTCCAA--------TGTTCC--CAT-A---T-GCAC----ATAGAA--ATATGA-C-ATT-TTAT-GC---ATTTTT----AAAAA--A--A-AAT-T---TACCC-AA-CCGCTTTACACAGCTCTAATT-TCTTG--GGCGTAATAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGTTCAGTGAG--ACC-T-TA---A-AT-------ATC--AATA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACAcgttctcatcatcggttgtgtcctgttaaacaattttacctgacttttccttattgtagctgacaatatataatatgaaataaggcactgcctaaaaggggatttatcaatttcaatcaatgtataattattatgtatatgtagattatttaatatcagtatgtcaggata
gi|11 : CACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGAACACATTGCC-AATGGTTCTGAAAGTGTCTTGTTTCCATAGAT-ATTCTTCTGCTAGTCCAAAT-ATGCAG-AAAA-AATTGC-TG----TGACCAGATTG-CTTTTTCACAATTTCGATGGTTTGGTGACA-CCTCTTAATTGTTTG-AC-AATTCCG-CCCATTTGTTGCA-GTGTATT-ACTACGCGTCTTTAAACT-GTT-ATAT-AT-TCACCTAAC---ACTTCCCAATGTC-GT-CAAAAC-TCG-GTAG-AA-C-TCTTTG--AAATGTTTCAA--------TGATCT--CAT-A---T-GTAC----AAATAG--ATATGACC-GTT-TAAA-AT---ATTTTC----AACAA--A--A-AATAA---TGCCC-AA-CCGATTTACACAGCTTTAGTT-TCTTG--GGCGCAATAAT-----TA---TCA---AG-GG-G-AG-GCAAATGGTAAGTGAG--ATT-TGTA---GTAG-------ATC--TGTG--TATAGA-CAGCATA-TAAC----AC
gi|12 : CACACACCAATTATTTTTGTATTGTT-CTGCATA-TAAAGA---GGCATGCACTCCTGGAACACTGAACACACTGAC-AATAATTCTTAAGGTGTCTTGTTTCCATAGAT-TTTCCTCCGTTAGTGTAAAT-AGGCAG-A----------------TTGA----------TATTTCACAATGTTGATGGTTTGATGACA-CTCCTTCATA-TTTT-ACAAATTTTG-CCCATTTGGTACA-GTGTATC-ACTACGCATCTTTAAATT-GTT-ATAT-AT-TTACC-AAC---AGTACCCAATGAC-AT-CCAAAC-TTG-GCAG-AA-C-TCATAA--AAATGTTCCAG--------TGTTCT--CAT-A---T-GTAC----AA--AA--ATATGACC-ATT-GTAA-GC---ATTTTC----ACCAG--T--A-ATC-A---TGCCCAAA-TCGATTTTCACAGCTCTAATT-TCTTC--GGCGCAATAAT----CTA---------AG-GG-G-AG-GTAATTTGTTAGTAAA--ACC-TATA---A-Agtgtttgcaccatattatacatgataaccatg
gi|13 : tctTAATTTTATACTTTT-CCACATA-TA--GA---GACTTGCATTTCTGGAACACTGAACACAATATT-AATGGTTCTAAAAGTGTCCTGTTTCCATAGAT-TGTCCTCTGTTAGTCCAAAT-AGGCAG-GACA-AA--ACATGGGGTTGACCAGATTG-CTTTTTCACAATGTCAATGGTTTTTTGACA-CCCCTTCATT-TTCA-AC-AATTCTG-CCCA--TAATGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCAAC---AGTTCTCAATATG-AT-CCAAAC-TTG-GCAG-AA-T-TCATTA--AAATGTTACAA--------TGTTCT--CAT-A---T-GTAT----AAAGAA--ATATGA-CTACT-TTAA-GA---ATTTTC----AACAA--A--A-CAT-A---TACTA-AA-CCGATTTACACAGTTCTAATT-TCTTA--GGCGCAATAA-----------TCAT--------G-AA-GTTATTGGTAAGTGAG--ATC-T-TA---A-atgtccctatcgtccagatgtgtcagatgtt
gi|14 : ACTGTT-CTACATA-TA--GA---CAAATGCACTTCTGGAATAC-------ATTACG-AATGGTTTTAAA-GTGCCTTGTTTCCATAGCT-AGTCCTCTGCTCGTCCAAAT-ATGCAG-AAAA-AA--AAA-GGGATTGACCAGGTTA-CTTTTTTACAATTTTGATGGTTTGATAAC
gi|14 : tcacatac-AC-CCAAATATCG-GCAG-AA-C-TCAAGA--CAATGTTCAAA--------TGTTCT--CAT-T---C-GTAT----AAAGAA--ATATGA-C-ACTATTAT-GC---ATTGGT----AAC-----------T-A---------AA-CCGAATTACACAGCTCTAGTT-TC--G--ATGGCAAGACTATTGCAACCGTCATGCAA-AG-A-AG-GTAATTCTTAAGTGAG--ACC-T-TA---A-AT-------AACAAGGTA--ccaaatatcggcagaactcaagacaatgttcaaatgttctcattcgtataaagaaatatgacactattatgcattggtaactaaaccgaattacacagctctagtttcgatggcaagactattgcaaccgtcatgcaaagaaggtaattcttaagtgagaccttaaataacaaggtaattgcaatgtagagtttggaaagtaacatta
gi|16 : tcacatacactgttctacatatagacaaatgcacttctggaatacattacgaatggttttaaagtgccttgtttccatagctagtcctctgctcgtccaaatatgcagaaaaaaaaagggattgaccaggttacttttttacaattttgatggtttgataCACACAACAATTAATTTTGTACTGTT-CTGCACA-TA--GA---TA-ATGCACTTCTGGAACACTGGATGCACTACC-AATCGTTCTAAAA---------------------GTCC-CTG--GATCC---C-AT-------AG-AA--ACATGGGGTT--CCAGGTTG-ATTTTTCACAATTCCAATGGTTTGATGGCA-CCCTTTCATA-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACCGCGCATCTTCTAACT-ATT-ATAG-CT-TCATCAAAattgcaatgtagagtttggaaagtaacatta
gi|16 : ctC----AAAGAA--ATATAA-C-ATG-TTAT-GC---ATTTTC----AACAA--A--A-AAA-AAAATGACA-AA-GCGCTTTACACAGCTCTAATT-TCTCG--GGCGTAAGAATCTTGCTACCGTCATGTAA-GG-G-AG-ATAgaaatataacatgttatgcattttcaacaaaaaaaaaaatgacaaagcgctttacacagctctaatttctcgggcgtaagaatcttgctaccgtcatgtaagggagata
gi|17 : ctcacacaacaattaattttgtactgttctgcacatagataatgcacttctggaacactggatgcactaccaatcgttctaaaagtccctggatcccatagaaacatggggttccaggttgatttttcacaattccaatggtttgatggcaccctttcatatttgacaattctgcccatttgttgcagtgtatcaccgcgcatcttctaactattatagcttcatCACAC-AATTAATTTTGCACTGTT-CTACATA-TA--GA---GAAATGCACTTCTGGAACACTAT-CACCTTACT-AATGGCTGTAAAAGTGAATTGTTGACATATAT-AGTCCTCTGTTGGTACTAAT-GTGCAG-AACA-AA--ACATTGGGTTGACCAAGTTA-TTTTTTCACAGCTT-GATGGTTTGATGACA-CCCCTTAATT-TTCG-AC-ATTTCTGCCCCATTTGTTGCT-GTGTATC-ACTACGCATCTTTAAGCT-ATT-ATAC-CC-TCATCAAAC---AGTTCCCAGAGTC-AT-CAAAAC-TTG-GCAA-AA-C-TCATGG--AAATACTCCAC--------TGTTAT--CATAA---T-GTAC----AAA
gi|18 : ct-T-TA---A-AT-------ATC--AATA--TATATATC-TTATAGTAAC----ACCAGATAA------ATAAGCATTATCGTACA
gi|19 : GCT-CTATACA-TA--GATCTAACGT----TCCTAGAACAC-------ATTGCC-AATTGTTCCAAAAGTGTCCTGTTTCCATAGAT-TGTCcctataaggcgtggactttccgtagtgcgtgtgaatttaacgtgacaccgtgcctaagttttgtttcatttggaggcttcgggtcgagctggggatcaaacacccaatctttgggttgagtggccaacactctgtcacactctactaccccgcttaaatttctgattttacttaaacatacattacacttatatactgagatgtatcatcgaattatattcttacgaaataacaaca
gi|19 : aAG-AA-C-ACATTGCCAATTGTTCCAAAAGTGTCCTGTTTC--CAT-AGATT-GT-C----A--GAA--ATATGA-CCATT-TCAA-TC---ATTTTC----AAC-A--A--A-AAT-A---ATCCT-GATCCAATTTACACAGCTCTAATT-TCTTG--AGCGCAATAATTTTGCAACTGTAACTAAA-GG-G-AG-GTAATTGGTAAGTGAG--ACC-T-TA---A-ACTAACACAATT--AATATTTATA-A-C--CATAATAACTTGAACTGGCTAAAATGTTATAACTATTGTTGTAagaaatatgaccatttcaatcattttcaacaaaaataatcctgatccaatttacacagctctaatttcttgagcgcaataattttgcaactgtaactaaagggaggtaattggtaagtgagaccttaaactaacacaattaatatttataaccataataacttgaactggctaaaatgttataactattgttgtaacactaagttgtaa
gi|2 : agctctatacatagatctaacgttcctCACATAACAATTAATTTTGAACTGTT-CTACATA-TA--GA---GACATTCAATTTTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAGAT-AGTCCTCTGTTTGACCAATT-ATGCAGAAAAA-AA--ACATGGGGTTGAGCAGG-TG-GTTTTTCACAATTTCGATGGTTTGATGGCACCCCCTTCATC-TTTG-AC-AAGTCTG-ATCATTTGTTGCA-GTCTGTC-ACTCCGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAC---AGTTCCCACTGTA-AT-CCAAAC-TTG-GCAT-AA-A-TCATGA--AAATGTTCCCA--------TGTTCC--CAT-A---T-GCAC----AAAGAA----ATGA-C-ATT-TTAT-GC---ATTTTT----AACAA--A--A-AAA-A---TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTA--GGCGTAAGAATCTT--T-CCGTCATGGAA-GG-G-AG-GTAATTCTTAAGAGAG--ACG-TATA---A-GT-------ATA--GTTA--CATacactaagttgtaa
gi|20 : acagattgttaaacatatgatgacttacatacttgaacgtctTGCATGTAGATC-ACTACCTATCTTTACATTAGTA-ATGT--T-TCATCAAAC---AGTACTCAATGTC-GT-CCAAAC-TTG-GCAG-AA-T-TCACGA--ATATCTTCTAA--------TGTTCT--CAT-A---C-GTAC----ACAGAA--ATATGA-CAACT-TCAT-GC---ATTTTC----AACAA--A--A-AATGA---TGCCC-AA-CCGATTCACACGTGTCTAATT-TCTTT--AGCGTAATAATCT---TACCGTCATGTAA-GG-G-AG-GTTATTCTTAAATGAG--ACCTT-TAAGCA-AT-------AAT--GGTA--TATA-gttcttaaacaagtatgtttggcatagtacttgtaacatttcttaaaaacttttcgtatttatttcgaatttgtttt
gi|21 : AACT-ATTGACATTCTGTCATCCAACGAAAGCT-----TACC-ATACCAGGC-TTAAGCAA-AAACATCATGA--AAAGATTCCAG--------TGTTCT--CAT-T---T-GTGC----GAAGAA--ATATGA-C-AAG-TTAATGG---ATTTTC----AGCAA--A--A-ATA-A---AGCCC-AG-CCGATTTACACAGCTCTAATT-AATTG--GGCGTTAAAATCGTCCAACCATCATGTAA-GG-G-AG-GTAATTCTTAAGTGAGATACC-T-TA---A-catgtacgtagaaggtattggtg
gi|22 : ACATAACATTTAATTTTGT-CTGTT-CTACACA-TA--GA---GAAATTCACTTCTGGACCACTGGACACACTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGTTTCAATT-ACGCAG-AAAAGAA--ACATGG---TGACCATGATG-CTTTTTCACAATTTTGGTAGTTTGATGACA-CCCCTTTATT-TATG-AA-AATTCTG-CCCATTTGTTGCA-ATGTATT-ACAATGCATCTTgcaaacaaaagccatgtacacaaattagtgttacatgtac
gi|23 : ACCAAAC---ACATACCAAGATC-GT-CCAAACCTTT-CCAATAG-CATTATGC--A--TGTTCCAA--------T--TCTGCCAA-C---C-GCAG----CCATAA--ATATGA-------TTGA-GCT--ATATT-------CAA--A--T-ACT-A---TGACA-AA-CCGCTTGGCACAA---TAATTATTTCGCTGGTGCAAAGGTCTTCTTACCGTT-TCCAA-GG-A-AA-GTAAATGATAAGCGAA--A
gi|24 : ATGTCTCT-CCAAAC-CTG-TCAG-AA-C-TCGTGC--AAATGTTTTAA-----------TCTA-CAT-A-------ACTTTTAAATAA--ACCTAATC-ATT-TTAA-GC---TTTTTCTTTTATCAA--ATCA-AACAA---TCCCC-AA-CCTATATACATACTTCTCTTT-CCTCG--GGCACA
gi|25 : acatgcaatatatACACAATTCTAGTT-TCTCT--TGTACAAGAGTCTTCCTCTCATTATCTAG-GG-G-AG-GTTATTGTTCAGGGAC--ACT-T-tg
gi|26 : acagagttcattagaagattctaatctttccttcttatgaatattatctttggaataattgacaaactgctaaCACACACCAATTAATTTTGTACTGTT-ATACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTCCCATAGAT-AGTCCTCTGTTGGTCCAAAT-A
gi|28 : tctTTTGTATTGTT-CTACATAGTA--------ACATACACTTCTGGAACACTGAACACATTGTG-GATGGTTCTAAAAGTGTCTTGTTTCTAAACAT-TGTCCTCTGTTAGTCCAAAT-ATTCA
gi|3 : aggCACACACCAATTAATTATGTACTGTT-CTACATA-TA--GA---GACATGCACATCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTTCCATAGAA-AGTCCTCTGTTGGTCCAAGT-ATGCAG-AAAA-AA--A--TGGGGTTGATTAGGTTG-CTTTTTCACAATTACGATGGTTTGATGGCA-CCCTTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACACATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGATCTCAATGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATAA--AAATGTTCCAA--------TGTTCC--CAT-A---T-GCAT----AAAGAA--ATATGA-C-ATT-ATAT-GCATTATTTTT----TGCAAC-A--A-AAT-----TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTT--GGCGTAATAATCTTGCTTCTGTCATGTAA-GG-G-AG-GTAATTCTTCAGTGAG--ACC-T-TG---A-A
gi|33 : ctAATCTTGCTACCGTCAT-TAA-GG-G-GGTGCAAATGGTAAGTGAT--ACgagtagaaattgtcatgagatgtgactcaaatttttgtcaaacaaacctttaccatttcttaatataaaaatatgccttttaaattcatcgcgcaattgttttcgaatccatgcaccaaaa
gi|34 : aCACACACCAATTAATTTTGCACTGTT-TTACATT-TA--GA---GA
gi|35 : ctATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAGCATTAATGTACAt
gi|36 : TGCTTCCGTCAC-TAA-GGAG-AG-ATACTTGGTAAGTGAA--ACC-
gi|37 : ATA-A-C-TGAAAGTAAC----ACCAGATAA------ATAAGAATTATTGTA
gi|38 : ATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAATATTATTGT
gi|39 : AA-GG-G-AG-GTAATTGGTAAGTTAG--ACC-T-TA---A-A
gi|4 : aCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GCCATGCGCTTCTGGAACACTGAACACATTGCC-AATGGTTCTAAAAGTGTATTGTTTCCATAGAA-TGTCCTCTGTTAGTCCAAAT-ATACAG-AAGA-AA--ACATGGGATTGACCAGGTTG-CTGTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-ATTTCTG-CCAAGTTGTGGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCCAC---ATAACACAATGTC-AT-CTAAAC-TTG-GCAG-GA-C-TCGTGA--AAATGGTTCAC--------TGTTCT--CAT-C---T-GTAC----AAAGAA--ATATGATT-ATT-TTAA-GC---ATTTTC----AACAA--A--A-TA--A---TG---------------CATATCTCTGTTT-TCTTG--GGCGCATTAATATTGCTTTCGTCAC-TAAGGG-G-AG-CTAATTGGTAAGTGAG--ACA-T-CATAGG-AT-------ATT--CGTG--TTTA-A-C--TATAct
gi|5 : CACACACCAATTAATTTTCCACTGTT-CTACATA-TA--GA-----CATGCACTTCTGTAACACTGAATACACTGTC-AATAGTTCTAAAAATGTCTTGTTTCCATAGAA-TGTCCTCTGTTAGTCCACAT-ATGCAG-GAAA-AA---CATGGGGTTGACCACATTG-CTTTTTCATTATTTTGATGTGTTGATGACA-CCCCTTCATT-TTTG-AC-AATTTTG-CCCATTTGTTGCT-GTGTATCCACTACGCATCTTTAAACT-GTT-ATAT-CT-TCACCCAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAGTGTTCCAA--------TGTTCT--CAT-T---T-GTAC----AAAGAA--ATATGACC-ATT-TTAA-GC---ATTTTC----ATCAA--A--A-CTG-A---TTCCC-AA-CCGATTTACACAGCTCTAATT-TCTTA--GCCGCA--------GTTATC-------------------TAATTGGTAAGTGAG--ACA-T-Tcacaatctgtagctattgacattgaaccatctgtggatgaaaggcaatacattgcataatatcaattataattgtatatggcattcagttcaatatcgtcggataa
gi|6 : gctgaaccacttcctaccagatcgatatatgaaaatacagtttacgtctCTGTT-CTATACAATA--GA---AAGATGCACTTCAGTAATGCTGAACACATT------TGGTTCTAAAAGTGTCTT-TCTCCATTAAT-AGTCCTCTATTGACCCAACTTATGCAC-AAAA-AA--ACTTGTAGTTGACCAGAT-G-CTTTTT-ATAATTT--------TGATGATA-CCCCTTTATT-TTTG-AC-AATTTTG-CCCATTAGTTGCA-TTTTATC-ACTACGAATCTTTAAACT-GTT-ATAT-CT-TCATCCAAC---TATAGCCACTGCC-AT-ACAAAC-TTG-GCAG-AA-T-TCATGC--AAATATTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGATC-ATT-TTAA-GC---A-TTTC----AACAA--A--A-ATA-A---TG-GC-AA-CTTATTTATATAGCCCTTATT-GCTTG--GGCGATATAATCTCGATACTGTCAC-TAA-GG-GAAG-GTAATTCGTAAGTGAtggcggttttctattctagaaataaaaaatgaatatattacacattttagtcacaatatttaatatacatgtatgtagatatggagtttata
gi|7 : ctcagtctctttctacgaagtcacatcataacgtatccagattattctcgtcttacatacatttaccaaaataatTTTTGCACTGTTTCTACATA-TA--GA---GAAATGTACTTCTGGAACACTGAACACATTATCAAACGGTTCTAAAGATGTC-TGTTTTCAcattttcttacaaatgtgacagctgcatacacgtgtgtatattgtaattaacgctaatg
gi|7 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttAGATTA-CTTTTTCACAATTTCAATGGTTTGATGTCA-CCCTTTAATT-TTTTTAC-AAGTCTA-CACAATTGTTGCA-GTGTATC-ACTACGCATCTTCAAACT-GCT-ATAC-AT-GCATCTAAC---AGCTGCCAATGCC-AT-CCAAAT-GTT-GAAG-AG-C-TCGTGA--AAATGTTTCAG--------T-TTGC--CA--A---TCGGAC-------------------C-GTT-TTAA-AC---ATTTGC----AACAC--A--A-AAT-A---CACCC-AC-TCAATTTACACAGCGTTAGTT-TCTTT--GGCGCAAGAATCATGCTACCGTCATTAAA-GG-G-AA-ATAATTGGTAAGTGAA--ACC-T-TC---A-AT--------------CA--TAAA-A-C---ATAGTggttaaacagaaagattactttttcacaatttcaatggtttgatgtcaccctttaatttttttacaagtctacacaattgttgcagtgtatcactacgcatcttcaaactgctatacatgcatctaacagctgccaatgccatccaaatgttgaagagctcgtgaaaatgtttcagtttgccaatcggaccgttttaaacatttgcaacacaaaatacacccactcaatttacacagcgttagtttctttggcgcaagaatcatgctaccgtcattaaagggaaataattggtaagtgaaaccttcaatcataaaacatagtgtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|8 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttttttgcactgtttctacatatagagaaatgtacttctggaacactgaacacattatcaaacggttctaaagatgtctgttttcaggttaaacagaaCAATGAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGGATACATTACC-AATGTTTCTAAAAGTGCTTTATTCCCACAGAT-AGTCCTCTGTTGGTCCAATT-ATGCAG-AAAA--A--ACATGGAGTTGACCAGGTGG-CTTTTTCACAATTTTGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATACTT-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAT---AGTTCCCAATGTC-AT-CCAAAT-TTG-ACAA-AA-A-TCATGA--AATTGTTCCAA--------TGTTCC--CAT-A---T-GCAA----AAAGAA--ATATGA-C-ATT-TTAT-GC---ATTTTT----AACAA--A--ATAAT-----TGCCC-AA-CCATTTTACACAGCTCTAA-T-TCTTG--G-------------GCTACCATCATGTGA-GG-G-AG-GTAATTCTAAAGTGAG--ACC-TATA---G-AT-------gtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|9 : aaACACAACAACTAATTTTGCACTGTT-CTCCGTA-TA--GA---GAAGCGCACTTCTGGAACACTGGATATATAACC-AATGTTTCAAAAAGGGCCTTGTTCACATGGATAAGTCCTCTGTTGGT-CAAAT-ATACAG-GAAA-CA--ACTT--GGTTGATAAGGATG-CTTTTTCACAATTTCAATGGTTTGATGACA-TCTCTTCATT-TTTG-AC-AATTGTA-CCCA-TTGTTGAA-ATTAATC-ACT--GTATCAT------------TAC-CT-T-------------------ATGTC-AT-CCAAAC-TTG-GTA-----------GA--AAATGTTCAAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATAAGA-CAATT-TTAT-GC---ATTTTC----AACAA--A--A-AATAA---TGCCC-AA-TTGGTTT--TCAGTTCTAATT-TCTTG--GGCGCAAAGATCTTGCCACTGCCATGTAA-AG-G-AG-ATAATTCTTAAGTGAG--ACC-T-Tccattttcgtgaataaatacaatttatttgtcctatgatgtgaagtaaatacataattatattgtatatgaacaacttacaatgttgatggatat
blockSeqs : T G AA TCT C A AA T A G TT . C C G T A C T C A G TT G A GAA T A A A T ACA CC AAGTGTCC GC A GAT C TTTT . CC A AT ATT TTTT C TC T AAAAA A T C A CT T CTTG GT G A A T GT AT T G AGC T TAACACAATTAA TT G T AG TTGA AATGTT
blockSeqs : . A . . C . A . . . . . C . . . . . . . . . G . T . . . C . . CA . . A . . . . . CC . T T . . . . TAA . . A . . T ATTG GC . . . . GG . . A TAG . AACAAGG . T . T . .
blockSeqs : . . . . C . A . . . . . T . . . . . . . . . T . C . . . . . . A . . . . . . . . CT . A . . . . . TGA . . A . . T CTTG GT . . . . TG . . A . . ATCTG . . . T . .
blockSeqs : . . . . C . T . . . . . C . . . . . . . . . T . A . . . . . . C . . . . . . . . CC . A . . . . . CAA . . A . . T TTTG TA . . . . GG . . A . . ATCAA . . . T . .
blockSeqs : . . . . A . T . . . . . T . . . . . . . . . T . A . . . . . . C . . . . . . . . CA . A . . . . . TAA . . A . . G CGTC GG . . . . CT . . . . . ATAGT . . . T . .
blockSeqs : . . . . A . A . . . . . C . . . . . . . . . G . A . . . . . . T . . . . . . . . TC . T . . . . . TT . . C . . G CTTC GT . . . . GG . . . . . AATGG . . . . .
blockSeqs : . . . . C . A . . . . . C . . . . . . . . . C . A . . . . . . C . . . . . . . . TT . T . . . . . CA . . A . . T CTTC GT . . . . CT . . . . . ATTCG . . . .
blockSeqs : . . . . C . T . . . . . T . . . . . . . . . G . C . . . . . . C . . . . . . . . CC . A . . . . . TA . . C . . G CTTG CC . . . . CT . . . . . . . . . .
blockSeqs : . . . . A . A . . . . . C . . . . . . . . . T . A . . . . . . C . . . . . . . . TC . T . . . . . TA . . A . . T CTTG CT . . . . CT . . . . . .
blockSeqs : . . . . C . A . . . . . C . . . . . . . . . G . A . . . . . . A . . . . . . . . CA . T . . . . . TA . . A . . A ATTG GT . . . . GA . . . . .
blockSeqs : . . . . C . A . . . . . T . . . . . . . . . T . C . . . . . . T . . . . . . . . C . A . . . . . AA . . C . . A CTCG TA . . . . GT . . . . .
blockSeqs : . . . . C . T . . . . . C . . . . . . . . . T . C . . . . . . C . . . . . . . . C . A . . . . . AA . . A . . G CATG GT . . . . CT . . . . .
blockSeqs : . . . . C . A . . . . . T . . . . . . . . . T . C . . . . . . A . . . . . . . . C . T . . . . . TA . . C . . T CTTG GT . . . . GG . . . . .
blockSeqs : . . . . C . T . . . . . C . . . . . . . . . C . T . . . . . . C . . . . . . . . C . A . . . . . GA . . A . . T CTT T . . . . GG . . . . .
blockSeqs : . . . . G . T . . . . . . . . . . . . . . . G . A . . . . . . C . . . . . . . . C . A . . . . . AA . . A . . T CT T . . . . GG . . . . .
blockSeqs : . . . . A . A . . . . . . . C . . . . . . . . T . . . . . . . . C . A . . . . . TA . . A . . G G T . . . . GG . . .
blockSeqs : . . . . C . A . . . . . . . C . . . . . . . . C . A . . . . . T . . T . . A G T . . . . GG . . .
blockSeqs : . . . . A . . . . . . . A . . . . . . . . C . T . . . . . A . . G . . . . . . . . . CG . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . . . . T . . . . . . . . . . . . GG . .
blockSeqs : . . . . . . . . . . . . . CT .
blockSeqs : . . . . . CT
blockSeqs : . . . .
blockSeqCons : A* ** CC* ** TA**** CTTG
originalCons : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGA-C-ATT-TTAN-GC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
finalCons : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGATA-GTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---T-GTAC----AAAGAA--ATATGACC-ATT-TTAN-GC---ATTTTC----AACAA--A--A-AATA----TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATATTTTATGTAGCTCACCCAATTGAGCTTGCATGTGGAGCACGTGGTCCAGCATCAAACCAACGGTCGGAGCGTTCGATTCTCCCACACGACCATGTGTAGTGTCCATGACCTTTTTCTTCATTATATTTAGAGCTGGTTCTACACAGGAAAACTTCGAACGTGACGTGTATACGTTGTGATAGTTTCACAATCGAAGTAAAATAAATGAGTTTAAACTCACTCACACGTCTCGCTTGATCACTGAAATAGGAAACATCTGTACTGTGATTCCTATAACTTCTCTTTATTACAAAATTACCAGAAACTGCGGCATCTTCGTAGTACAACGGTTATCAATATCTTGTCTTTATAGCGGTTT
Unaligned ( gi|27 ): GAGTAGAAATTGTCATGACATGTGACTGAAAATTTTGTCGAACAAACCTTTACCATTTCTAAATATAAAAGTACGCCTTTTGAATTCATCGCGCAACTGTTTTCGAATTCATGCACCAAAA
Unaligned ( gi|29 ): AAAAACCACAACATTTTAGATATAAGGTTTACATCTTAAAAATCGTCTTTGAATACCAAGGGTAATCC
Unaligned ( gi|30 ): AATGTAATAATGCAATTAAAATATAATCAAATAAAACGGACACCTGTCATTTTTCTA
Unaligned ( gi|31 ): TAGATAAGTGTCATTGTACGCCGATAAAGCGTGGAGTTGCAATAGTGCGTGTGAA
Unaligned ( gi|32 ): CATACGGCGTGGACTTTCCGTAGTGCTTGTGAATCTAACGTGACACCGGGCTA
Alignments
lowQualScore : 111111 22222222222222 11 1111 111111
lowQualScore : 1 3 22 333 1 0 2 33 0 2 2 2 33 0 2 1 2 2 2 2 2 0 2 2 2 2 33 2 4 444 2 2 4 2 2 555 22 77777777 44 44444 4444 22 77 1 555 4444 44 22 2 222222 2 2 1 1 22 2 5555 99 1 1 1 1 22 22 2 8 888 2 00000000000000 66 8 4 44 2222 999999
lowQualScore : . . .. ... . . . .. . . . . .. . . . . . . . . . . . . . .. . . ... . . . . . ... .. ........ .. ..... .... .. .. . ... .... .. .. . ...... . . . . .. . .... .. . . . . .. .. . . ... . .............. .. . . .. .... ......
lowQualScore : 9 8 66 333 2 1 0 88 3 2 5 5 44 3 4 5 5 5 5 5 5 2 4 4 4 4 44 4 6 111 1 1 2 1 0 999 88 22222222 88 00000 0000 88 88 0 555 2222 88 88 0 555555 0 0 4 9 66 4 9999 55 7 7 7 7 44 66 0 4 888 5 44444444444444 11 0 4 44 1111 222222
consensus : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---TGTAC----AAAGAA--ATATGACCATTTTANGC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
Reference ( family-335 ) : CACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGACACATTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCAGGTTG-CTTTTTCACAATTTCGATGGTTTGATGACA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAN-CT-TCATCAAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAATGTTCCAA--------TGTTCT--CAT-A---TGTAC----AAAGAA--ATATGACCATTTTANGC---ATTTTC----AACAA--A--A-AAT-A---TGCCC-AA-CCGATTTACACAGCTCTAATT-TCTTG--GGCGCAANAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGNTAAGTGAG--ACC-T-TA---A-AT-------ATC--GGTA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACA
gi|1 : CAACAATTAATTTTTTACTGTT-CTACATA-TA--GA---GAAATGCACTTCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAG-----TCCTCTGTTGGTCCAATT-ATGCAG--AAA-AA--ACATGGGGTTGACCAGATTGCCTTTTCCACAACTTTGATGGTTTGGTGACA-TCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTACA-GTATATC-ACAATGCATCTTTAAACA-GTT-TTAG-CT-TCAACAAAC---AGTTCCCAGTTTC-AT-CCAAAC-TTG-GCAA-AA-A-TCATGA--AAATGTTCTAA--------TGTTTT--CAT-A---TGCAC----AAAGCATTATATAA-CATTTTATGC---ATTTTT----AACAAATA--A-AAT-----TGCCC-AA-ATGCTTTACACAGCTCTAATT-TCTTG--GGAGTAAAAAT----CTACCGGCATGTAA-GG-G-AG-GTAATTCTTAAGTGAG--ACC-T-AA---A-A
gi|10 : ccCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCATATTCCCACAGAT-AGTCCTCTGTTGGTCCAAAT-ATGCAG-AAAA-AA--ACATGGGGTTGACCGGGTTG-CTTTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGTTCCCAGGGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATGA--AAATGTTCCAA--------TGTTCC--CAT-A---TGCAC----ATAGAA--ATATGA-CATTTTATGC---ATTTTT----AAAAA--A--A-AAT-T---TACCC-AA-CCGCTTTACACAGCTCTAATT-TCTTG--GGCGTAATAATCTTGCTACCGTCATGTAA-GG-G-AG-GTAATTGTTCAGTGAG--ACC-T-TA---A-AT-------ATC--AATA--TATA-A-C-TTATAGTAAC----ACCAGATAA------ATAAGCATTATTGTACAcgttctcatcatcggttgtgtcctgttaaacaattttacctgacttttccttattgtagctgacaatatataatatgaaataaggcactgcctaaaaggggatttatcaatttcaatcaatgtataattattatgtatatgtagattatttaatatcagtatgtcaggata
gi|11 : CACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGAACACATTGCC-AATGGTTCTGAAAGTGTCTTGTTTCCATAGAT-ATTCTTCTGCTAGTCCAAAT-ATGCAG-AAAA-AATTGC-TG----TGACCAGATTG-CTTTTTCACAATTTCGATGGTTTGGTGACA-CCTCTTAATTGTTTG-AC-AATTCCG-CCCATTTGTTGCA-GTGTATT-ACTACGCGTCTTTAAACT-GTT-ATAT-AT-TCACCTAAC---ACTTCCCAATGTC-GT-CAAAAC-TCG-GTAG-AA-C-TCTTTG--AAATGTTTCAA--------TGATCT--CAT-A---TGTAC----AAATAG--ATATGACCGTTTAAAAT---ATTTTC----AACAA--A--A-AATAA---TGCCC-AA-CCGATTTACACAGCTTTAGTT-TCTTG--GGCGCAATAAT-----TA---TCA---AG-GG-G-AG-GCAAATGGTAAGTGAG--ATT-TGTA---GTAG-------ATC--TGTG--TATAGA-CAGCATA-TAAC----AC
gi|12 : CACACACCAATTATTTTTGTATTGTT-CTGCATA-TAAAGA---GGCATGCACTCCTGGAACACTGAACACACTGAC-AATAATTCTTAAGGTGTCTTGTTTCCATAGAT-TTTCCTCCGTTAGTGTAAAT-AGGCAG-A----------------TTGA----------TATTTCACAATGTTGATGGTTTGATGACA-CTCCTTCATA-TTTT-ACAAATTTTG-CCCATTTGGTACA-GTGTATC-ACTACGCATCTTTAAATT-GTT-ATAT-AT-TTACC-AAC---AGTACCCAATGAC-AT-CCAAAC-TTG-GCAG-AA-C-TCATAA--AAATGTTCCAG--------TGTTCT--CAT-A---TGTAC----AA--AA--ATATGACCATTGTAAGC---ATTTTC----ACCAG--T--A-ATC-A---TGCCCAAA-TCGATTTTCACAGCTCTAATT-TCTTC--GGCGCAATAAT----CTA---------AG-GG-G-AG-GTAATTTGTTAGTAAA--ACC-TATA---A-Agtgtttgcaccatattatacatgataaccatg
gi|13 : tctTAATTTTATACTTTT-CCACATA-TA--GA---GACTTGCATTTCTGGAACACTGAACACAATATT-AATGGTTCTAAAAGTGTCCTGTTTCCATAGAT-TGTCCTCTGTTAGTCCAAAT-AGGCAG-GACA-AA--ACATGGGGTTGACCAGATTG-CTTTTTCACAATGTCAATGGTTTTTTGACA-CCCCTTCATT-TTCA-AC-AATTCTG-CCCA--TAATGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCAAC---AGTTCTCAATATG-AT-CCAAAC-TTG-GCAG-AA-T-TCATTA--AAATGTTACAA--------TGTTCT--CAT-A---TGTAT----AAAGAA--ATATGACTACTTTAAGA---ATTTTC----AACAA--A--A-CAT-A---TACTA-AA-CCGATTTACACAGTTCTAATT-TCTTA--GGCGCAATAA-----------TCAT--------G-AA-GTTATTGGTAAGTGAG--ATC-T-TA---A-atgtccctatcgtccagatgtgtcagatgtt
gi|14 : ACTGTT-CTACATA-TA--GA---CAAATGCACTTCTGGAATAC-------ATTACG-AATGGTTTTAAA-GTGCCTTGTTTCCATAGCT-AGTCCTCTGCTCGTCCAAAT-ATGCAG-AAAA-AA--AAA-GGGATTGACCAGGTTA-CTTTTTTACAATTTTGATGGTTTGATAAC
gi|14 : tcacatac-AC-CCAAATATCG-GCAG-AA-C-TCAAGA--CAATGTTCAAA--------TGTTCT--CAT-T---CGTAT----AAAGAA--ATATGACACTATTATGC---ATTGGT----AAC-----------T-A---------AA-CCGAATTACACAGCTCTAGTT-TC--G--ATGGCAAGACTATTGCAACCGTCATGCAA-AG-A-AG-GTAATTCTTAAGTGAG--ACC-T-TA---A-AT-------AACAAGGTA--ccaaatatcggcagaactcaagacaatgttcaaatgttctcattcgtataaagaaatatgacactattatgcattggtaactaaaccgaattacacagctctagtttcgatggcaagactattgcaaccgtcatgcaaagaaggtaattcttaagtgagaccttaaataacaaggtaattgcaatgtagagtttggaaagtaacatta
gi|16 : tcacatacactgttctacatatagacaaatgcacttctggaatacattacgaatggttttaaagtgccttgtttccatagctagtcctctgctcgtccaaatatgcagaaaaaaaaagggattgaccaggttacttttttacaattttgatggtttgataCACACAACAATTAATTTTGTACTGTT-CTGCACA-TA--GA---TA-ATGCACTTCTGGAACACTGGATGCACTACC-AATCGTTCTAAAA---------------------GTCC-CTG--GATCC---C-AT-------AG-AA--ACATGGGGTT--CCAGGTTG-ATTTTTCACAATTCCAATGGTTTGATGGCA-CCCTTTCATA-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACCGCGCATCTTCTAACT-ATT-ATAG-CT-TCATCAAAattgcaatgtagagtttggaaagtaacatta
gi|16 : ctC----AAAGAA--ATATAAC-ATGTTATGC---ATTTTC----AACAA--A--A-AAA-AAAATGACA-AA-GCGCTTTACACAGCTCTAATT-TCTCG--GGCGTAAGAATCTTGCTACCGTCATGTAA-GG-G-AG-ATAgaaatataacatgttatgcattttcaacaaaaaaaaaaatgacaaagcgctttacacagctctaatttctcgggcgtaagaatcttgctaccgtcatgtaagggagata
gi|17 : ctcacacaacaattaattttgtactgttctgcacatagataatgcacttctggaacactggatgcactaccaatcgttctaaaagtccctggatcccatagaaacatggggttccaggttgatttttcacaattccaatggtttgatggcaccctttcatatttgacaattctgcccatttgttgcagtgtatcaccgcgcatcttctaactattatagcttcatCACAC-AATTAATTTTGCACTGTT-CTACATA-TA--GA---GAAATGCACTTCTGGAACACTAT-CACCTTACT-AATGGCTGTAAAAGTGAATTGTTGACATATAT-AGTCCTCTGTTGGTACTAAT-GTGCAG-AACA-AA--ACATTGGGTTGACCAAGTTA-TTTTTTCACAGCTT-GATGGTTTGATGACA-CCCCTTAATT-TTCG-AC-ATTTCTGCCCCATTTGTTGCT-GTGTATC-ACTACGCATCTTTAAGCT-ATT-ATAC-CC-TCATCAAAC---AGTTCCCAGAGTC-AT-CAAAAC-TTG-GCAA-AA-C-TCATGG--AAATACTCCAC--------TGTTAT--CATAA---TGTAC----AAA
gi|18 : ct-T-TA---A-AT-------ATC--AATA--TATATATC-TTATAGTAAC----ACCAGATAA------ATAAGCATTATCGTACA
gi|19 : GCT-CTATACA-TA--GATCTAACGT----TCCTAGAACAC-------ATTGCC-AATTGTTCCAAAAGTGTCCTGTTTCCATAGAT-TGTCcctataaggcgtggactttccgtagtgcgtgtgaatttaacgtgacaccgtgcctaagttttgtttcatttggaggcttcgggtcgagctggggatcaaacacccaatctttgggttgagtggccaacactctgtcacactctactaccccgcttaaatttctgattttacttaaacatacattacacttatatactgagatgtatcatcgaattatattcttacgaaataacaaca
gi|19 : aAG-AA-C-ACATTGCCAATTGTTCCAAAAGTGTCCTGTTTC--CAT-AGATTGT-C----A--GAA--ATATGACCATTTCAATC---ATTTTC----AAC-A--A--A-AAT-A---ATCCT-GATCCAATTTACACAGCTCTAATT-TCTTG--AGCGCAATAATTTTGCAACTGTAACTAAA-GG-G-AG-GTAATTGGTAAGTGAG--ACC-T-TA---A-ACTAACACAATT--AATATTTATA-A-C--CATAATAACTTGAACTGGCTAAAATGTTATAACTATTGTTGTAagaaatatgaccatttcaatcattttcaacaaaaataatcctgatccaatttacacagctctaatttcttgagcgcaataattttgcaactgtaactaaagggaggtaattggtaagtgagaccttaaactaacacaattaatatttataaccataataacttgaactggctaaaatgttataactattgttgtaacactaagttgtaa
gi|2 : agctctatacatagatctaacgttcctCACATAACAATTAATTTTGAACTGTT-CTACATA-TA--GA---GACATTCAATTTTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTGTTCCCATAGAT-AGTCCTCTGTTTGACCAATT-ATGCAGAAAAA-AA--ACATGGGGTTGAGCAGG-TG-GTTTTTCACAATTTCGATGGTTTGATGGCACCCCCTTCATC-TTTG-AC-AAGTCTG-ATCATTTGTTGCA-GTCTGTC-ACTCCGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAC---AGTTCCCACTGTA-AT-CCAAAC-TTG-GCAT-AA-A-TCATGA--AAATGTTCCCA--------TGTTCC--CAT-A---TGCAC----AAAGAA----ATGA-CATTTTATGC---ATTTTT----AACAA--A--A-AAA-A---TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTA--GGCGTAAGAATCTT--T-CCGTCATGGAA-GG-G-AG-GTAATTCTTAAGAGAG--ACG-TATA---A-GT-------ATA--GTTA--CATacactaagttgtaa
gi|20 : acagattgttaaacatatgatgacttacatacttgaacgtctTGCATGTAGATC-ACTACCTATCTTTACATTAGTA-ATGT--T-TCATCAAAC---AGTACTCAATGTC-GT-CCAAAC-TTG-GCAG-AA-T-TCACGA--ATATCTTCTAA--------TGTTCT--CAT-A---CGTAC----ACAGAA--ATATGACAACTTCATGC---ATTTTC----AACAA--A--A-AATGA---TGCCC-AA-CCGATTCACACGTGTCTAATT-TCTTT--AGCGTAATAATCT---TACCGTCATGTAA-GG-G-AG-GTTATTCTTAAATGAG--ACCTT-TAAGCA-AT-------AAT--GGTA--TATA-gttcttaaacaagtatgtttggcatagtacttgtaacatttcttaaaaacttttcgtatttatttcgaatttgtttt
gi|21 : AACT-ATTGACATTCTGTCATCCAACGAAAGCT-----TACC-ATACCAGGC-TTAAGCAA-AAACATCATGA--AAAGATTCCAG--------TGTTCT--CAT-T---TGTGC----GAAGAA--ATATGACAAGTTAATGG---ATTTTC----AGCAA--A--A-ATA-A---AGCCC-AG-CCGATTTACACAGCTCTAATT-AATTG--GGCGTTAAAATCGTCCAACCATCATGTAA-GG-G-AG-GTAATTCTTAAGTGAGATACC-T-TA---A-catgtacgtagaaggtattggtg
gi|22 : ACATAACATTTAATTTTGT-CTGTT-CTACACA-TA--GA---GAAATTCACTTCTGGACCACTGGACACACTACC-AATGGTTCTAAAAGTGCCTTGTTTCCATAGAT-AGTCCTCTGTTGTTTCAATT-ACGCAG-AAAAGAA--ACATGG---TGACCATGATG-CTTTTTCACAATTTTGGTAGTTTGATGACA-CCCCTTTATT-TATG-AA-AATTCTG-CCCATTTGTTGCA-ATGTATT-ACAATGCATCTTgcaaacaaaagccatgtacacaaattagtgttacatgtac
gi|23 : ACCAAAC---ACATACCAAGATC-GT-CCAAACCTTT-CCAATAG-CATTATGC--A--TGTTCCAA--------T--TCTGCCAA-C---CGCAG----CCATAA--ATATGA-----TTGAGCT--ATATT-------CAA--A--T-ACT-A---TGACA-AA-CCGCTTGGCACAA---TAATTATTTCGCTGGTGCAAAGGTCTTCTTACCGTT-TCCAA-GG-A-AA-GTAAATGATAAGCGAA--A
gi|24 : ATGTCTCT-CCAAAC-CTG-TCAG-AA-C-TCGTGC--AAATGTTTTAA-----------TCTA-CAT-A------ACTTTTAAATAA--ACCTAATCATTTTAAGC---TTTTTCTTTTATCAA--ATCA-AACAA---TCCCC-AA-CCTATATACATACTTCTCTTT-CCTCG--GGCACA
gi|25 : acatgcaatatatACACAATTCTAGTT-TCTCT--TGTACAAGAGTCTTCCTCTCATTATCTAG-GG-G-AG-GTTATTGTTCAGGGAC--ACT-T-tg
gi|26 : acagagttcattagaagattctaatctttccttcttatgaatattatctttggaataattgacaaactgctaaCACACACCAATTAATTTTGTACTGTT-ATACATA-TA--GA---GACATGCACTTCTGGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTCCCATAGAT-AGTCCTCTGTTGGTCCAAAT-A
gi|28 : tctTTTGTATTGTT-CTACATAGTA--------ACATACACTTCTGGAACACTGAACACATTGTG-GATGGTTCTAAAAGTGTCTTGTTTCTAAACAT-TGTCCTCTGTTAGTCCAAAT-ATTCA
gi|3 : aggCACACACCAATTAATTATGTACTGTT-CTACATA-TA--GA---GACATGCACATCTAGAACACTGGATACATTACC-AATGGTTCTAAAAGTGCCTTATTTCCATAGAA-AGTCCTCTGTTGGTCCAAGT-ATGCAG-AAAA-AA--A--TGGGGTTGATTAGGTTG-CTTTTTCACAATTACGATGGTTTGATGGCA-CCCTTTCATT-TTTG-AC-AATTCTG-CCCATTTGTTGCA-GTGTATC-ACTACACATCTTTAAACT-GTT-ATAG-CA-TCATCAAAC---AGATCTCAATGTC-AC-CCAAAC-TTT-GCAG-AA-A-TCATAA--AAATGTTCCAA--------TGTTCC--CAT-A---TGCAT----AAAGAA--ATATGA-CATTATATGCATTATTTTT----TGCAAC-A--A-AAT-----TGCCC-AA-CCGCTTTACACAGCTCTAATT-TCTTT--GGCGTAATAATCTTGCTTCTGTCATGTAA-GG-G-AG-GTAATTCTTCAGTGAG--ACC-T-TG---A-A
gi|33 : ctAATCTTGCTACCGTCAT-TAA-GG-G-GGTGCAAATGGTAAGTGAT--ACgagtagaaattgtcatgagatgtgactcaaatttttgtcaaacaaacctttaccatttcttaatataaaaatatgccttttaaattcatcgcgcaattgttttcgaatccatgcaccaaaa
gi|34 : aCACACACCAATTAATTTTGCACTGTT-TTACATT-TA--GA---GA
gi|35 : ctATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAGCATTAATGTACAt
gi|36 : TGCTTCCGTCAC-TAA-GGAG-AG-ATACTTGGTAAGTGAA--ACC-
gi|37 : ATA-A-C-TGAAAGTAAC----ACCAGATAA------ATAAGAATTATTGTA
gi|38 : ATA-A-C-TTAAAGTAAC----ACCAGATAA------ATAAATATTATTGT
gi|39 : AA-GG-G-AG-GTAATTGGTAAGTTAG--ACC-T-TA---A-A
gi|4 : aCACACACCAATTAATTTTGTACTGTT-CTACATA-TA--GA---GCCATGCGCTTCTGGAACACTGAACACATTGCC-AATGGTTCTAAAAGTGTATTGTTTCCATAGAA-TGTCCTCTGTTAGTCCAAAT-ATACAG-AAGA-AA--ACATGGGATTGACCAGGTTG-CTGTTTCACAATTTCGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-ATTTCTG-CCAAGTTGTGGCA-GTGTATC-ACTACGCATCTTTAAACT-GTA-ATAT-CT-TCATCCCAC---ATAACACAATGTC-AT-CTAAAC-TTG-GCAG-GA-C-TCGTGA--AAATGGTTCAC--------TGTTCT--CAT-C---TGTAC----AAAGAA--ATATGATTATTTTAAGC---ATTTTC----AACAA--A--A-TA--A---TG---------------CATATCTCTGTTT-TCTTG--GGCGCATTAATATTGCTTTCGTCAC-TAAGGG-G-AG-CTAATTGGTAAGTGAG--ACA-T-CATAGG-AT-------ATT--CGTG--TTTA-A-C--TATAct
gi|5 : CACACACCAATTAATTTTCCACTGTT-CTACATA-TA--GA-----CATGCACTTCTGTAACACTGAATACACTGTC-AATAGTTCTAAAAATGTCTTGTTTCCATAGAA-TGTCCTCTGTTAGTCCACAT-ATGCAG-GAAA-AA---CATGGGGTTGACCACATTG-CTTTTTCATTATTTTGATGTGTTGATGACA-CCCCTTCATT-TTTG-AC-AATTTTG-CCCATTTGTTGCT-GTGTATCCACTACGCATCTTTAAACT-GTT-ATAT-CT-TCACCCAAC---AGTTCCCAATGTC-AT-CCAAAC-TTG-GCAG-AA-C-TCATGA--AAGTGTTCCAA--------TGTTCT--CAT-T---TGTAC----AAAGAA--ATATGACCATTTTAAGC---ATTTTC----ATCAA--A--A-CTG-A---TTCCC-AA-CCGATTTACACAGCTCTAATT-TCTTA--GCCGCA--------GTTATC-------------------TAATTGGTAAGTGAG--ACA-T-Tcacaatctgtagctattgacattgaaccatctgtggatgaaaggcaatacattgcataatatcaattataattgtatatggcattcagttcaatatcgtcggataa
gi|6 : gctgaaccacttcctaccagatcgatatatgaaaatacagtttacgtctCTGTT-CTATACAATA--GA---AAGATGCACTTCAGTAATGCTGAACACATT------TGGTTCTAAAAGTGTCTT-TCTCCATTAAT-AGTCCTCTATTGACCCAACTTATGCAC-AAAA-AA--ACTTGTAGTTGACCAGAT-G-CTTTTT-ATAATTT--------TGATGATA-CCCCTTTATT-TTTG-AC-AATTTTG-CCCATTAGTTGCA-TTTTATC-ACTACGAATCTTTAAACT-GTT-ATAT-CT-TCATCCAAC---TATAGCCACTGCC-AT-ACAAAC-TTG-GCAG-AA-T-TCATGC--AAATATTCCAA--------TGTTCT--CAT-A---TGTAC----AAAGAA--ATATGATCATTTTAAGC---A-TTTC----AACAA--A--A-ATA-A---TG-GC-AA-CTTATTTATATAGCCCTTATT-GCTTG--GGCGATATAATCTCGATACTGTCAC-TAA-GG-GAAG-GTAATTCGTAAGTGAtggcggttttctattctagaaataaaaaatgaatatattacacattttagtcacaatatttaatatacatgtatgtagatatggagtttata
gi|7 : ctcagtctctttctacgaagtcacatcataacgtatccagattattctcgtcttacatacatttaccaaaataatTTTTGCACTGTTTCTACATA-TA--GA---GAAATGTACTTCTGGAACACTGAACACATTATCAAACGGTTCTAAAGATGTC-TGTTTTCAcattttcttacaaatgtgacagctgcatacacgtgtgtatattgtaattaacgctaatg
gi|7 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttAGATTA-CTTTTTCACAATTTCAATGGTTTGATGTCA-CCCTTTAATT-TTTTTAC-AAGTCTA-CACAATTGTTGCA-GTGTATC-ACTACGCATCTTCAAACT-GCT-ATAC-AT-GCATCTAAC---AGCTGCCAATGCC-AT-CCAAAT-GTT-GAAG-AG-C-TCGTGA--AAATGTTTCA----------GTT------------TGC-C---------A--ATCGGACCGTTTTAAAC---ATTTGC----AACAC--A--A-AAT-A---CACCC-AC-TCAATTTACACAGCGTTAGTT-TCTTT--GGCGCAAGAATCATGCTACCGTCATTAAA-GG-G-AA-ATAATTGGTAAGTGAA--ACC-T-TC---A-AT--------------CA--TAAA-A-C---ATAGTggttaaacagaaagattactttttcacaatttcaatggtttgatgtcaccctttaatttttttacaagtctacacaattgttgcagtgtatcactacgcatcttcaaactgctatacatgcatctaacagctgccaatgccatccaaatgttgaagagctcgtgaaaatgtttcagtttgccaatcggaccgttttaaacatttgcaacacaaaatacacccactcaatttacacagcgttagtttctttggcgcaagaatcatgctaccgtcattaaagggaaataattggtaagtgaaaccttcaatcataaaacatagtgtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|8 : tagcataataggtatagcattcaacatataacataaagtttactgcttgtctcatataacttttttgcactgtttctacatatagagaaatgtacttctggaacactgaacacattatcaaacggttctaaagatgtctgttttcaggttaaacagaaCAATGAATTTTGTACTGTT-CTACATA-TA--GA---GACATACACTTCTGGAACACTGGATACATTACC-AATGTTTCTAAAAGTGCTTTATTCCCACAGAT-AGTCCTCTGTTGGTCCAATT-ATGCAG-AAAA--A--ACATGGAGTTGACCAGGTGG-CTTTTTCACAATTTTGATGGTTTGATGGCA-CCCCTTCATT-TTTG-AC-AATACTT-CCCATTTGTTGCA-GTGTATC-ACTACGCATCTTTAAACT-GTT-ATAG-CT-TCATCAAAT---AGTTCCCAATGTC-AT-CCAAAT-TTG-ACAA-AA-A-TCATGA--AATTGTTCCAA--------TGTTCC--CAT-A---TGCAA----AAAGAA--ATATGA-CATTTTATGC---ATTTTT----AACAA--A--ATAAT-----TGCCC-AA-CCATTTTACACAGCTCTAA-T-TCTTG--G-------------GCTACCATCATGTGA-GG-G-AG-GTAATTCTAAAGTGAG--ACC-TATA---G-AT-------gtcctcatttataccataactattaaaacataatattatgtaaacactgaaataaaaaaaaatgttatattaa
gi|9 : aaACACAACAACTAATTTTGCACTGTT-CTCCGTA-TA--GA---GAAGCGCACTTCTGGAACACTGGATATATAACC-AATGTTTCAAAAAGGGCCTTGTTCACATGGATAAGTCCTCTGTTGGT-CAAAT-ATACAG-GAAA-CA--ACTT--GGTTGATAAGGATG-CTTTTTCACAATTTCAATGGTTTGATGACA-TCTCTTCATT-TTTG-AC-AATTGTA-CCCA-TTGTTGAA-ATTAATC-ACT--GTATCAT------------TAC-CT-T-------------------ATGTC-AT-CCAAAC-TTG-GTA-----------GA--AAATGTTCAAA--------TGTTCT--CAT-A---TGTAC----AAAGAA--ATAAGACAATTTTATGC---ATTTTC----AACAA--A--A-AATAA---TGCCC-AA-TTGGTTT--TCAGTTCTAATT-TCTTG--GGCGCAAAGATCTTGCCACTGCCATGTAA-AG-G-AG-ATAATTCTTAAGTGAG--ACC-T-Tccattttcgtgaataaatacaatttatttgtcctatgatgtgaagtaaatacataattatattgtatatgaacaacttacaatgttgatggatat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATATTTTATGTAGCTCACCCAATTGAGCTTGCATGTGGAGCACGTGGTCCAGCATCAAACCAACGGTCGGAGCGTTCGATTCTCCCACACGACCATGTGTAGTGTCCATGACCTTTTTCTTCATTATATTTAGAGCTGGTTCTACACAGGAAAACTTCGAACGTGACGTGTATACGTTGTGATAGTTTCACAATCGAAGTAAAATAAATGAGTTTAAACTCACTCACACGTCTCGCTTGATCACTGAAATAGGAAACATCTGTACTGTGATTCCTATAACTTCTCTTTATTACAAAATTACCAGAAACTGCGGCATCTTCGTAGTACAACGGTTATCAATATCTTGTCTTTATAGCGGTTT
Unaligned ( gi|27 ): GAGTAGAAATTGTCATGACATGTGACTGAAAATTTTGTCGAACAAACCTTTACCATTTCTAAATATAAAAGTACGCCTTTTGAATTCATCGCGCAACTGTTTTCGAATTCATGCACCAAAA
Unaligned ( gi|29 ): AAAAACCACAACATTTTAGATATAAGGTTTACATCTTAAAAATCGTCTTTGAATACCAAGGGTAATCC
Unaligned ( gi|30 ): AATGTAATAATGCAATTAAAATATAATCAAATAAAACGGACACCTGTCATTTTTCTA
Unaligned ( gi|31 ): TAGATAAGTGTCATTGTACGCCGATAAAGCGTGGAGTTGCAATAGTGCGTGTGAA
Unaligned ( gi|32 ): CATACGGCGTGGACTTTCCGTAGTGCTTGTGAATCTAACGTGACACCGGGCTA