lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 2222222 333333 5555555555555555555555 111111 11 22222222222222222222 777777777777777777777777777777777777777777777777777777777777777777777 777777777777777777777 1111 1111111111111 1111 11111111111111111111 11 222
lowQualScore : 11111 6666666 2 333333 3 9999999999999999999999 33 8 111111 8888 99 0 44 55555555555555555555 777 4 777 88 2 888888888888888888888888888888888888888888888888888888888888888888888 5 888 4 1 777777777777777777777 55555 0 9 2 5555 444 33 2 3333 6666666666666 3 66666 2 0000 2 444 3 99999999999999999999 5 55 4 222
lowQualScore : ..... ....... . ...... . ...................... .. . ...... .... .. . .. .................... ... . ... .. . ..................................................................... . ... . . ..................... ..... . . . .... ... .. . .... ............. . ..... . .... . ... . .................... . .. . ...
lowQualScore : 00000 0000000 8 777777 5 4444444444444444444444 88 9 555555 5555 44 1 11 22222222222222222222 888 4 888 44 0 111111111111111111111111111111111111111111111111111111111111111111111 6 000 0 6 000000000000000000000 88888 3 9 7 7777 777 11 7 4444 9999999999999 1 77777 5 3333 5 111 1 55555555555555555555 5 99 0 111
consensus : TCATATTNCACATTTCCTTCT-------TTGTTCAATGTGACG---NC-ATCCGGTCAATATATAAGTA-GTAT--AC-G-----GGAC-CGGTCCAA------TAT----AA-NACGGGGGATGAC-TTC-NC-CAG-TCCAA--TATA---C-AA---AATGTGTAA-GTATTTCGATAT--GCAA-GCACATCCAAAGGGCGCGTT--ATGCCCNAATNGAA------CAC-CA---ATTG-AA-T-GTTANTTTT-G-TATTG-TGT-----TT-AAT--AT-TT-GGTAAAATA--T--AACAAAT-AA----TA---CATGGTGTTTCGGTCC-A--N-ATGC-------------AAGTT-TA---CGGAC-TG--GNCA-GTC---CGTA-AACTT-------------GCATN--TGGACCNAAACACCATGTATT-ATTTGTTAN--ATGTA
Reference ( gi|4 ) : TTAT-TTAAACATTTCCTTTT-------TTGTTTAATGTGACA---AT-ATTCGGTCAATATATTATTA-ATAT--AC-G-----GGAC-TGGTCCAA------TAT----AA-TATGGAAGATGAT-TTC-CC-CAG-TTCAC--TATA---C-AA---AATGTGTAA-ATGTTTCAATAT--GCAA-ACATATCTAAAGTTTGTATT--ATGCCTTAATTGAA------AAT-TA---ATTGAAAAAAGTTAGTTTT-A-TATTG-TGT-----TTTAATG-AT-TTCAGTAAAATA--T--AACTAAT-AA----TA---CATGGTGTTTCAGTCC-A--A-ATGC-------------AAGTT-TA---TTGAC-TG--GGCA-GTC---CATA-AACTT-------------GCATT--TGGACCAAAACACCATGTAGT-ATTTGTTAA--ATGTA
gi|2 : TCAT-TTTCACACTTTCTTCT-------TTGTTCAATGTGATATCTATCATCAAGTCAGTATATAAGTA--TGT-----------GGAC-TAGTCCAAGTCCATTAT----AA-ACTGGG-GATGAT-GTC-AT-CAAACCCAT--TACA---C-AA---AATATAGAA-GTATTTCAATAT--GCAA-ACATATCCGAACAGTGCATT--ATGCC-CAATTGA------------A---ATCACAAATCTTTTCTTTTAA-TATTATTGT-----TTGGAT--AT-----ATAAA--A--T--AACAAAT-TATATTTA---CCTGGTGTTTCAGTCC-T--A-ATG
gi|13 : aaacttctactatataaataaaccTATATTACATATTTCATTCT-------TTGTTTAATGTAAGG---AC-ATCCGGTCAATGTA-----A-GTAT--AT-GTAAAAAAAC-CGGTCCAA------TGT----AA-AATGtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatgactgcccagtccgtaaacgtggactgaatcaccatgtttttttgttaattatgttaa
gi|15 : ACATTTCCTTCT-------TTTTTCAATGTGACAT--CC-ATCCAGTCGATATA-AATTA-GTAT--A
gi|11 : cACATTTCCTTTT-------TTGTACAATACGACG---CC-ACCCAGTCAATACGCAAGTATATGTGGACAG-----GGGC-CGATCCTA------TAT----A
gi|1 : actactaaactgacgtaaatggttataccacgttttcATTTTCTTTTGCATTATTTGTTAAATATGACA---TC-ATCCGGTCAATATA--AG-A-ATAT-----------GGAC-CGG-------------------G-TATGAAA--TCAT------C-CAG-TCCAA--TA-A---CGAA---AACGTGT----TGTTT---TAT--TC--------TTTAAAATCTGCATTCCGTGTTTT--TCAAAGGGTTCATT-TT---ATTTAAATTTGTTATTTTC-A-TATTG-AGT-----TT-GATT-AT-TT----ATAATA--T--AACGAGTTAA----TA---CACAGTATTTTGGTCC-A--A-ATGC-------------AAGTC-TA---CGAAC-TG--GACA-ATC---caaccgggaatgacgt
gi|3 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattTTTCATTTTACA---TT--TTTGCCCAATATATTTGTATATGTG-AC-C-----GGTT-TGGTCCAA------TAT----AAATATGGG-GATGAC-GTC-ATGCAG-TCCAA--TATA---C-AA---AATGTGTAA-GTATTTCAATAT--------CA-----AAAGGGTGAGTT--ATGTCCAAATGGAA------CACAGA---ATTG-------TTTGTTTT-GGTATTG-TAT-----TTGAATA----TTAGGTAAAATA--T--AACAAAT-AA----TA---CATTGTGTTTTGGTTC-ATTA-ATTC-------------AAGTT-TA---TGGAC-TG--GTCATGTC---CATA-Aaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|8 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaaA-GTAT--AT-G-----G-ACGTGCTCCAA------TAT----AA-GACTGGGGATGAT-TCA-TC-CAG-TCAAA--TTTA---C-AA---AATGTGTAA-GTATTTCGATAT--GCAA-GCACATCCCATGGGCATACT--ATGCC-CAACAGGA-----------------TG------GTTATTTTT-G-TATTG-T-T-----ATCAAT--ATATTCGGTATAACA--G--A--TAAT-GA----TA---TATGGTGCTTCAGTtattctatctaggtctgactactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|7 : A-GTAT--AT-G-----G-ACGTGCTCCAA------TAT----AA-GACTGGGGATGAT-TCA-TC-CAG-TCAAA--TTTA---C-AA---AATGTGTAA-GTATTTCGATAT--GCAA-GCACATCCCATGGGCATACT--ATGCC-CAACAGGA-----------------TG------GTTATTTTT-G-TATTG-T-T-----ATCAAT--ATATTCGGTATAACA--G--A--TAAT-GA----TA---TATGGTGCTTCAGTt
gi|6 : C-G-----GGCC-CGATTCAG------TAT----AG-TACAAGGGATGACATTA-TT-CGG-ACAAA--TATA---C-AA---AATGTGTAA-GTATATTAATAT-------------------------TC--ATGCCTAAATGGAA------CGA-CAC--ATTTA------TTAGTTTT-G-TATTA-TGT-----TTCAATGTAT-TTCA-TATAATA--T--AAAAAAT-AG----GA---TGAGGTGTTTTGGTCC-A--A-ATGCAGTCGGGCCTACAAAGTTGTA---TGGAC-C----TCC-GTC---CGTC-AA-TT-------------GCATA--CGTTCCTAATCATCATATATT-AATTGTTAA--ATATt
gi|10 : tataagaatC-A-----GGCC-TGGTCCAA------TAT----AA-AACTGGCGATGAC-ATCATC-CAA-TCCAG--TATA---C-AA---AATGTGGAA-ATATTTCAATAT--ACAA-GCACATtt
gi|9 : tgatGGTCCAA------TATACAGAA-TGTGCAAGATG---TTC-GC-TA--TTCGCATTATATTTC-AAAAGAATGTGTgttcgagtggatttgttattttcaggttgtgttgaatatatatatatatata
gi|9 : acttcatcaAC-TTC-AT-CAGGTCCAA--TATA---C-AG---AATGTGCAAGATGTT-CGCTATTCGCATTATATTTCAAAAGAATGTGTT--TTGCCCGAATC--A------AAC-CATACATTT------GTTATTTTC-A-TATTG-TGT-----T----TG-A-------TAATATA--T--ATCAAAT-GA----TT---CATTGCGTTTTGGTCC-tttgcccgaatcaaaccatacatttgttattttcatattgtgtttgataatatatatcaaatgattcattgcgttttggtccttttacaaattcaa
gi|1 : AA------CAT-TA---AGTGCAAATA-TTAGTTGT-G-CATTG-TGT-----T-------AT-TT-GGCAA---A--T--AACAAAT-AA----AC---CAGGGGTTTTCGGTCC-A--T-ATG--------------------------TAAC-TG--GGTA-GTC---ttttacaaattcaa
gi|5 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataatataacgagttaatacacagtattttggtccaaatgcaagtctacgaactggacaatcaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctTTTT-G-TATTG-TGTCAGGATATATTG----TTTA-TGAAATA--C--AACTAAT-A----------CGTTGTATTTCGGTCC-A--A-AATT-------------AAGTT-TA---CAGAC-TT--GGCA-GTC---atgttttgctggtttaaca
gi|5 : tttgttattTTT-A-TTTTG-TGT-----T-------A-----AGTAACATAACT--AACAAAT-AA----AA---CATCGTATTGATGTCC-A--C-ATGT-------------AAGTT-TA---TGGAC-TG--GACA-G------ACA-TACT----------------A----TGGACCAAAagacctagtaagttatatagatcccagcttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|16 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgaGCAAAACA-----AACAGA--AA----TA---CATGGTGTTGAGGTTC-A--T-ATGC-------------AAGTT-TA---gaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|6 : AAATA--TTTAACAATT-AA----TA---TATGATGATTAGGAAC-G--T-ATGC-------------AA---------TTGAC-GGACGGAG-GTC---CATACAACTTTGTAGGCCCGACTGCATT--TGGACCAAAACACCTCATCCT-ATTTTTTAT--AT
gi|2 : tataagaatcgggcccgattcagtatagtacaagggatgacattattcggacaaatatacaaaatgtgtaagtatattaatattcatgcctaaatggaacgacacatttattagttttgtattatgtttcaatgtatttcatataAACA--T--AATTAAC-AA----AAAAACATGGTGATTCAGTCC-A-------C---------------GTT-TA---CGGAC-TG--GGCA-GTC---
gi|3 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatATC--T--AACAAAT-AA----TA---CATGGTATTGAGGTCC-A--T-ATGC-------------AAGTT-TA---TGAAC-TT--AGTA-GTC---aa
gi|12 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtct--T--AGCAAAC-AA----TA---CATGGTGCTG-AGGGC-A--ATATGC-------------AAGTT-TA---CTAAC-TG--GTCA-GTCAGACCTA-GAATG-------------GTATA--TGGACatat
gi|3 : caTCAGACCTA--G-ATAG-------------AATAT-TA---TGGACATG--ACCA-GTC---CATA-AACTT-------------GAATTAATGAACCAAAACACAATGTATT-ATTTGTTAT--ATctggctgaatatgt
gi|12 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaCAGTCC-A--T-ATAC-------------CATTC-TAGGTCTGAC-TG--ACCA-GTT---AGTA-AACTT-------------GCATA--TTGCCCTCAGCACCATGTATT-GTTTGCTActactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|1 : ---TTGAT-TG--TCCA-GTT---CGTA-GACTT-------------GCATT--TGGACCAAAATACTGTGTATTAACTCGTTAT--ATctggctgaatatgt
gi|2 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataTGAC-TG--CCCA-GTC---CGTA-AAC---------------G------TGGACTGAATCACCATGT-TT-TTTTGTTAATTATGTatccagcatactacattgacctcagcattgccatagtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|5 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcaTGTC-TG--TCCA-GTC---CATA-AACTT-------------ACATG--TGGACATCAATACGATGTTTT-ATTTGTTAGTTATGTtaa
gi|5 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgatttggtccatagtaTGAC-TG--CCAA-GTC---TGTA-AACTT-------------AATTT--TGGACCGAAATACAACGTATT-AGTTGTtacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|3 : tttgttattttttgtattgtgtcaggatatattgtttatgaaat---CATA-AACTT-------------GCATA--TGGACCTCAATACCATGTATT-ATTTGTTAG--ATATAgacctagtaagttatatagatcccagcttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|16 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtctgactactaagttTA-AACTT-------------GCATA--TGAACCTCAACACCATGTATT--TCTGTTt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ATACCTCATTTTAATATTTCCTTCTTTGTCCAATGAGACTTCATCAGGTCCAATATACAGAATGTG
Unaligned ( gi|17 ): TATTTGGAAGAAGTTAGATATCATTCAGTTGATGTCCTTTGT
Unaligned ( gi|18 ): TTTATAATTTTAATCTGGTATTGCAAAATATCAAAATA
Alignments
lowQualScore : 2 11111111 2222222222222222222222 11111 111111 1111 1 9999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333333333 111 2222222222222
lowQualScore : 3 1 33333333 5 2222222222222222222222 1 8 00000 111111 4 99 44 1111 2 4 4 1 3333333333333333333333333333333333333333333333333333333333333333333333333 1 3 3 3 6666666666666666666666 22 88 000 3 77777 555 0000000000000 3 2 777 1 4 2 0 1 1 11 1 1 0
lowQualScore : . . ........ . ...................... . . ..... ...... . .. .. .... . . . . ......................................................................... . . . . ...................... .. .. ... . ..... ... ............. . . ... . . . . . . .. . . .
lowQualScore : 7 0 99999999 0 4444444444444444444444 6 0 00000 555555 9 88 44 0000 0 0 4 7 4444444444444444444444444444444444444444444444444444444444444444444444444 0 3 3 3 1111111111111111111111 66 55 888 1 22222 666 0000000000000 6 7 000 0 0 2 8 0 0 66 2 0 7
consensus : TCAT-TTTCACATTTCCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGAC-TTCA-C-CAG-TCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACA--TCC-AAGGGCGTGTTATGCCCGAATGGAA--CACN--A---ATTG----AT--GTTATTTTC-GTATTG-TG-TT-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTCCGTAAACTTGCATATGGACCTAAACACCATGTATTATTTGTTAAATATA
Reference ( family-321 ) : TCATATTNCACATTTCCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAANACGGGGGATGAC-TTCN-C-CAG-TCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACA--TCCAAAGGGCGCGTTATGCCCNAATNGAA--CACC--A---ATTG---AAT--GTTANTTTT-GTATTG-TG-TT-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTCCGTAAACTTGCATNTGGACCNAAACACCATGTATTATTTGTTANATGTA
gi|1 : TTATTTGTTAAATATGACA-TC----ATCCGGT-CAATATA--AG-A---ATAT---------GGAC-CGG---------G------TATGAAA-------------TCATC-CAG-TCCAATA-ACGAAAACGTGT---TGT-TT---TAT--TCTTTAAAATCTGCA--TTC------CGTGTTTT--TCAAAGGGTT--CATTTTA---TTTA---AATTTGTTATTTTC-ATATTG-AG-TT-T-G--ATT-AT-TT-------ATAATA--TAACG---AGTTAA----TACACAGTATTTTGGTCCA--AATGC-------------AAGTC-TACG---AACTGGACA-ATC
gi|1 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcaAA--CATT--A---AGTGCA-AAT--ATTAGTTGT-GCATTG-TG-TT----------AT-TT-G---GCAAA-----TAACA---AAT-AA----ACCAGGGGTTTTCGGTCCA--TATGT-------------A-------------ACTGGGTA-GTCaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|10 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataatataacgagttaatacacagtattttggtccaaatgcaagtctacgaactggacaatcaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctC-A-----GGCC-TGGT-----CCAA------TATAAAACTGGCGATGAC-ATCATC-CAA-TCCAGTATAC-AAAATGTGGAAATAT-TTCAATAT--AC-----AAGC-ACA--T-----------GTT-----CGAGTGG--------------ATT------T--GTTATTTTC-AGGTTG-TG-TT-G-A--AT--AT-atgttttgctggtttaaca
gi|11 : tgatTTTCACATTTCCTTTTTTGTACAATACGACG-CC----ACCCAGT-CAATACGCAAGTATATGTGGACAG-----GGGC-CGAT-----CCTA------TATACAACCGGGAATGAC-atatatatatata
gi|12 : actactaaactgacgtaaatggttataccacgtCAGTCCA--TATAC-------------CATTC-TAGGTCTGACTGACCA-GTTAGTAAACTTGCATATTGCCCTCAGCACCATGTATTGTTTGCTAgt
gi|13 : ATATTACATATTTCATTCTTTGTTTAATGTAAGG-AC----ATCCGGT-CAATGTA-----A---GTATAT-GTAAAAAAAC-CGGT-----CCAA------TGTAAAATGctggctgaatatgt
gi|14 : tTCAT-TTTAATATTTCCTTCTTTGTCCAATGAGACT-TC----ATCAGGTCCAATATACA
gi|14 : ataccGAC-TTCA-T-CAGGTCCAATATAC-AGAATGTGgaatgtg
gi|15 : atacctcattttaatatttccttctttgtccaatgaCACATTTCCTTCTTTTTTCAATGTGACATCC----ATCCAGT-CGATATA-AATTA---GTATA
gi|16 : ---GCAAAACA---AACA---GA--AA----TACATGGTGTTGAGGTTCA--TATGC-------------AAGTT-TA
gi|2 : TCAT-TTTCACACTTTCTTCTTTGTTCAATGTGATA-TCTATCATCAAGT-CAGTATATAAGTA----TGT---------GGAC-TAGT-----CCAAGTCCATTATAA-ACTGGGGATGAT-GTCA-T-CAAACCCATTACAC-AAAATATAGAAGTAT-TTCAATAT--GC-----AAAC-ATA--TCCGAACAGTGCATTATGCCC-AATTGAAATCACA--A---ATC------T--TTTCTTTTA-ATATTATTG-TT-TGG--AT--AT--------ATAAA--A--TAACA---AAT-TATATTTACCTGGTGTTTCAGTCCT--AATG
gi|2 : aaacttctactatataaataaaccTAACATAATTAACA---AAA-AA-----ACATGGTGATTCAGTCCA--C-------------------GTT-TACG---GACTGGGCA-GTCtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatgactgcccagtccgtaaacgtggactgaatcaccatgtttttttgttaattatgttaa
gi|3 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcat-CAATATAT---TT---GTATAT-G-----TGAC-CGGTTTGGTCCAA------TATAAATATGGGGATGAC-GTCA-TGCAG-TCCAATATAC-AAAATGTGTAAGTAT-TTCAATAT---------------CA-----AAAGGGTGAGTTATGTCCAAATGGAA--CACAG-A---ATTG-----T---TTGTTTTG-GTATTG-TA-TT-TGA--AT--AT-TA-G---GTAAAATA--TAACA---AAT-AA----TACATTGTGTTTTGGTTCATTAATTC-------------AAGTT-TATG---GACTGGTCATGTCCATAAa
gi|3 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcc---GACTACTAA-GTTCATAAACTTGCATATGGACCTCAATACCATGTATTATTTGTTAGATATAtattctatctaggtctgactactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|4 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtctTTAAACATTTCCTTTTTTGTTTAATGTGACA-AT----ATTCGGT-CAATATATTATTA---ATATAC-G-----GGAC-TGGT-----CCAA------TATAATATGGAAGATGAT-TTCC-C-CAG-TTCACTATAC-AAAATGTGTAAATGT-TTCAATAT--GC-----AAAC-ATA--TCTAAAGTTTGTATTATGCCTTAATTGAA--AATT--A---ATTGAAAAAA--GTTAGTTTT-ATATTG-TGTTT-T-A--ATG-AT-TTCA---GTAAAATA--TAACT---AAT-AA----TACATGGTGTTTCAGTCCA--AATGC-------------AAGTT-TATT---GACTGGGCA-GTCCATAAACTTGCATTTGGACCAAAACACCATGTAGTATTTGTTAAATGTAt
gi|5 : ttatT--GTTATTTTTTGTATTG-TG-TCAG-G--AT--ATATT-GTTTATGAAATA--CAAC------T-AA----TACGTTGTATTTCGGTCCA--AAATT-------------AAGTT-TACA---GACTTGGCA-GTC
gi|5 : tt---ATTG---CATC-ATTTTCTTT-ATTTTG-TG-TT---A--A-------------GTAACATAACTAACA---AAT-AA----AACATCGTATTGATGTCCA--CATGT-------------AAGTT-TATG---GACTGGACA-G-------ACATAC-TATGGACCAAAagacctagtaagttatatagatcccagcttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|6 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgaTATAAG-A---AT---C-G-----GGCC-CGAT-----TCAG------TATAGTACAAGGGATGACATTAT-T-CGG-ACAAATATAC-AAAATGTGTAAGTAT-ATTAATAT--------------------------------TCATGCCTAAATGGAA--CGAC--AC--ATT------T--ATTAGTTTT-GTATTA-TG-TT-TCA--ATGTAT-TT-C---ATATAATA--TAAAA---AAT-AG----GATGAGGTGTTTTGGTCCA--AATGCAGTCGGGCCTACAAAGTTGTATG---GACC--TCC-GTCCGTCAA-TTGCATACGTTCCTAATCATCATATATTAATTGTTAAATATaagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|7 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGAT-TCAT-C-CAG-TCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACA--TCCCATGGGCATACTATGCCC------AA--CA-----------G---GATG-GTTATTTTT-GTATTG-TT-AT-C-AATAT--AT-TC-G---G-----TA--TAACAGATAAT-GA----TATATGGTGCTTCAGTtt
gi|8 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGAT-TCAT-C-CAG-TCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACA--TCCCATGGGCATACTATGCCC------AA--CA-----------G---GATG-GTTATTTTT-GTATTG-TT-AT-C-AATAT--AT-TC-G---G-----TA--TAACAGATAAT-GA----TATATGGTGCTTCAGTt
gi|9 : AC-TTCA-T-CAGGTCCAATATAC-AGAATGTGCAAG-ATGTTCGCTATTCGC------ATT-ATATTTCAAAAGAATGTGTTTTGCCCGAATCAA----ACC--ATACATT------T--GTTATTTTC-ATATTG-TG--------------T-TT-G---ATAATATA--TATCA---AAT-GA----TTCATTGCGTTTTGGTCCT--TTTAC-------------AAATT-CAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTGGAAGAAGTTAGATATCATTCAGTTGATGTCCTTTGT
Unaligned ( gi|18 ): TTTATAATTTTAATCTGGTATTGCAAAATATCAAAATA
Alignments
lowQualScore : 11111111 2222222222222222222222 11111 111111 222 8888888888888888888888888888888888888888888888888888888888888888888888888888 11111 33333333333333333333333333333 111 2222222222222 11111 111
lowQualScore : 77 77777777 5 2222222222222222222222 1 8 00000 111111 11 77 222 4 8 4 4 1 1111111111111111111111111111111111111111111111111111111111111111111111111111 3 5555 00000 3 444 33333333333333333333333333333 88 000 3 77777 6666 77777 555 0000000000000 44 99999 1 3 66 5 22222 66 000 1
lowQualScore : .. ........ . ...................... . . ..... ...... .. .. ... . . . . . ............................................................................ . .... ..... . ... ............................. .. ... . ..... .... ..... ... ............. .. ..... . . .. . ..... .. ... .
lowQualScore : 99 44444444 0 4444444444444444444444 6 0 00000 555555 00 77 000 0 0 0 4 7 0000000000000000000000000000000000000000000000000000000000000000000000000000 1 5555 88888 1 999 22222222222222222222222222222 55 888 1 22222 5555 11111 666 0000000000000 00 44444 0 6 88 0 55555 44 000 7
consensus : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGA----CG-NCATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACNTCATC-C-AG-TCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GG-GCGTGTTATGCCCGAATGGAA-C-ACG-------AATTG-----T--GTTAT-TTTC-G-T-----ATTG-TG-T-T-T-A--AT--AT-TT-G---GTA---AAATA--TAACA---AAT-AA----TACATGGT----GTTTCG-----GTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTCCGTAAA-CTTGCAT-----ATGGACCTCAACA---CCATGTATTATTTGTTAGATATA
Reference ( family-321 ) : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGA----CG-NCATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACTTCA-C-C-AG-TCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GG-GCGTGTTATGCCCGAATGGAA-C-ACN-------AATTG----AT--GTTAT-TTTC-G-T-----ATTG-TG-T-T-T-A--AT--AT-TT-G---GTA---AAATA--TAACA---AAT-AA----TACATGGT----GTTTCG-----GTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTCCGTAAA-CTTGCAT-----ATGGACCTAAACA---CCATGTATTATTTGTTAAATATA
gi|1 : TTATTTTC---TTTTGCATTATTTGTTAAATATGA----CA-TCATCCGGT-CAATATA--AG-A---ATAT---------GGAC-CGG---------G------TATGAAA------------TCATC-C-AG-TCCAATA-ACGAAAACGTGT---TGT-TT---TAT--TCTTTAAAATCTGCATTC----------CGTGTTTT--TCAAAGGGTT-C-ATTTTATTTAAATT------T--GTTAT-TTTC-A-T-----ATTG-AG-T-T-T-G--ATT-AT-TT-------A---TAATA--TAACG---AGTTAA----TACACAGT----ATTTTG-----GTCCA--AATGC-------------AAGTC-TACG---AACTGGACA-ATC---AAATCCAGCATACTACATTGACCTCAGCATTGCCAT
gi|1 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacaAA-C-ATT-------AAGTGCAA-AT--ATTAG-TTGT-G-C-----ATTG-TG-T-T----------AT-TT-G---GCA---AA-----TAACA---AAT-AA----ACCAGGGG----TTTTCG-----GTCCA--TATGT-------------A-------------ACTGGGTA-GTCagtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|10 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataatataacgagttaatacacagtattttggtccaaatgcaagtctacgaactggacaatcaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctC-A-----GGCC-TGGT-----CCAA------TATAAAACTGGCGATGACATCATC-C-AA-TCCAGTATAC-AAAATGTGGAAATAT-TTCAATAT--AC-----AAGC-ACAT---------------GTT-----CGAGTGGA----------------TT------T--GTTAT-TTTC-A-G-----GTTG-TG-T-T-G-A--AT--AT-atgttttgctggtttaaca
gi|11 : tgatCGTTTTCACATTT--CCTTTTTTGTACAATACGA----CG-CCACCCAGT-CAATACGCAAGTATATGTGGACAG-----GGGC-CGAT-----CCTA------TATACAACCGGGAATGACatatatatatata
gi|12 : actactaaactgacgtaaatggttataccaCA-----GTCCA--TATAC-------------CATTC-TAGGTCTGACTGACCA-GTTAGTAAA-CTTGCAT-----ATTGCCCTCAGCA---CCATGTATTGTTTGCTAgt
gi|13 : TTACATATTT--CATTCTTTGTTTAATGTAA----GG-ACATCCGGT-CAATGTA-----A---GTATAT-GTAAAAAAAC-CGGT-----CCAA------TGTAAAActggctgaatatgt
gi|14 : tataTCATTTTAATATTT--CCTTCTTTGTCCAATGAGA----CT-TCATCAGGTCCAATATACAtg
gi|14 : ataccGACTTCA-T-C-AGGTCCAATATAC-AGAATGTGgaatgtg
gi|15 : atacctcattttaatatttccttctttgtccaatgaCACATTT--CCTTCTTTTTTCAATGTGA----CATCCATCCAGT-CGATATA-AATTA---GTATA
gi|16 : TAAA-CTTGCAT-----ATGAACCTCAACA---CCATGTATT-TCTGTT
gi|2 : TCATTTTCACACTT--TCTTCTTTGTTCAATGTGATATCTA-TCATCAAGT-CAGTATATAAGTA----TGT---------GGAC-TAGT-----CCAAGTCCATTAT-AAACTGGGGATGATGTCA-T-CAAA-CCCATTACAC-AAAATATAGAAGTAT-TTCAATAT--GC-----AAAC-ATATCCG--AA-CA-GTGCATTATGCCCAATTGAAATC-ACA-------AATC------T--TTTCT-TTTA-A-T-----ATTATTG-T-T-TGG--AT--AT--------ATA---AA--A--TAACA---AAT-TATATTTACCTGGT----GTTTCA-----GTCCT--AATGtgttttgc
gi|2 : aaacttctactatataaataaaccTA---ACATAATTAACA---AAA-AA-----ACATGGT----GATTCA-----GTCCA--C-------------------GTT-TACG---GACTGGGCA-GTCtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatgactgcccagtccgtaaacgtggactgaatcaccatgtttttttgttaattatgttaa
gi|3 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcat-CAATATAT---TT---GTATAT-G-----TGAC-CGGTTTGGTCCAA------TATAAATATGGGGATGACGTCA-TGC-AG-TCCAATATAC-AAAATGTGTAAGTAT-TTCAATAT---C-----AA------------AA-GG-GTGAGTTATGTCCAAATGGAA-C-ACAG------AATTG-----T---TTGT-TTTG-G-T-----ATTG-TA-T-T-TGA--AT--AT-TA-G---GTA---AAATA--TAACA---AAT-AA----TACATTGT----GTTTTG-----GTTCATTAATTC-------------AAGTT-TATG---GACTGGTCATGTCCATAAa
gi|3 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcc---GACTACTAA-GTTCATAAA-CTTGCAT-----ATGGACCTCAATA---CCATGTATTATTTGTTAGATATAtattctatctaggtctgactactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|4 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtctTTATTTAAACATTT--CCTTTTTTGTTTAATGTGA----CA-ATATTCGGT-CAATATATTATTA---ATATAC-G-----GGAC-TGGT-----CCAA------TATAATATGGAAGATGATTTCC-C-C-AG-TTCACTATAC-AAAATGTGTAAATGT-TTCAATAT--GC-----AAAC-ATATCT---AA-AGTTTGTATTATGCCTTAATTGAA-A-ATT-------AATTGAAAAAA--GTTAG-TTTT-A-T-----ATTG-TGTT-T-T-A--ATG-AT-TTCA---GTA---AAATA--TAACT---AAT-AA----TACATGGT----GTTTCA-----GTCCA--AATGC-------------AAGTT-TATT---GACTGGGCA-GTCCATAAA-CTTGCAT-----TTGGACCAAAACA---CCATGTAGTATTTGTTAAATGTAt
gi|5 : T--GTTAT-TTTTTG-T-----ATTG-TG-T-CAG-G--AT--ATATT-GTTTATG---AAATA--CAAC------T-AA----TACGTTGT----ATTTCG-----GTCCA--AAATT-------------AAGTT-TACA---GACTTGGCA-GTC
gi|5 : ttATGAAA-T-AC--------AACTA----ATACGTTGTATTTC-GGTCCAAAATTA-AG-T-T-T-AC-AG--AC-TT-G---GCAGTCAGACC--TAGTA---AGT-TA----TATA-GATCCCAGCTTCGATTTGGTCCA--TA-GT-------------ATGT-----------CTGTCCA-GTCCATAAA-CTTACAT-----GTGGACATCAATA---CGATGTTTTATTTGTTAGTTATagacctagtaagttatatagatcccagcttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|5 : tttgttattttttgtattgtgtcaggatatattgtttTCAT-TTTC-T-TT----ATTT-TG-TGT-T-A--A-------------GTA---ACATAACTAACA---AAT-AA----AACATCGT----ATTGAT-----GTCCA--CATGT-------------AAGTT-TATG---GACTGGACA-G-------A-CATAC-T-----ATGGACC-AAAgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|6 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgaTATAAG-A---AT---C-G-----GGCC-CGAT-----TCAG------TATAGTACAAGGGATGACATTA-TTC-GG-ACAAATATAC-AAAATGTGTAAGTAT-ATTAATAT----------------------------------TCATGCCTAAATGGAA-CGACA-------CATT------T--ATTAG-TTTT-G-T-----ATTA-TG-T-T-TCA--ATGTAT-TT-C---ATA---TAATA--TAAAA---AAT-AG----GATGAGGT----GTTTTG-----GTCCA--AATGCAGTCGGGCCTACAAAGTTGTATG---GACC--TCC-GTCCGTCAA--TTGCAT-----ACGTTCCTAATCA---TCATATATTAATTGTTAAATATtgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|7 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGA-TTCATC-C-AG-TCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGG-GCATACTATGCCC------AA-C-AGG-------A--TG--------GTTAT-TTTT-G-T-----ATTG-TT-A-T-C-AATAT--AT-TC-G---G--------TA--TAACAGATAAT-GA----TATATGGT----GCTTCA-----GTtt
gi|8 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGA-TTCATC-C-AG-TCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGG-GCATACTATGCCC------AA-C-AGG-------A--TG--------GTTAT-TTTT-G-T-----ATTG-TT-A-T-C-AATAT--AT-TC-G---G--------TA--TAACAGATAAT-GA----TATATGGT----GCTTCA-----GTt
gi|9 : ACTTCA-T-C-AGGTCCAATATAC-AGAATGTGCAAG-ATGTTCGCTATTCGC-----A-TT-ATATTTCAAAA-GA-ATGTGTTTTGCCCGAATCAAA-CCATA-------CATT------T--GTTAT-TTTC-A-T-----ATTG-TG---------------T-TT-G---ATA---ATATA--TATCA---AAT-GA----TTCATTGC----GTTTTG-----GTCCT--TTTAC-------------AAATT-CAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTGGAAGAAGTTAGATATCATTCAGTTGATGTCCTTTGT
Unaligned ( gi|18 ): TTTATAATTTTAATCTGGTATTGCAAAATATCAAAATA
Alignments
lowQualScore : 11111111 2222222222222222222222 11111 111111 666666666666666666666666666666666666666666666666666666666666666666666666666 3333333333333333333333 111 2222222222222 22222222 11111 111
lowQualScore : 77 33333333 5 2222222222222222222222 1 8 00000 111111 11 66 4 4 1 999999999999999999999999999999999999999999999999999999999999999999999999999 55 3 3 3 6666666666666666666666 44 99 111 3 88888 666 2222222222222 4 2 777 1 4 00000000 5 0 22222 1 111 3 0
lowQualScore : .. ........ . ...................... . . ..... ...... .. .. . . . ........................................................................... .. . . . ...................... .. .. ... . ..... ... ............. . . ... . . ........ . . ..... . ... . .
lowQualScore : 99 99999999 0 4444444444444444444444 6 0 00000 555555 00 55 0 4 7 444444444444444444444444444444444444444444444444444444444444444444444444444 55 3 3 3 3333333333333333333333 33 22 777 3 55555 000 0000000000000 0 7 000 0 0 55555555 0 4 55555 1 777 8 7
consensus : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACNTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
Reference ( family-321 ) : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACNTCATCCAGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAACA---CCATGTATTATTTGTTAGATATA
gi|1 : TTATTTTC---TTTTGCATTATTTGTTAAATATGACA-TC----ATCCGGT-CAATATA--AG-A---ATAT---------GGAC-CGG---------G------TATGAAA------------TCATCCAGTCCAATA-ACGAAAACGTGT---TGT-TT---TAT--TCTTTAAAATCTGCATTC---------C-GTGTTTT--TCAAAGGGTT-C-ATTTTATTTAAATT-T-----GTTATTTTC-AT-ATTG-AGT-T-T-G--ATT-AT-TT-------ATAATA--TAACG---AGTTAA----TACACAGTATTTTGGTCCA--AATGC-------------AAGTC-TACG---AACTGGACA-ATC---------AAATCCAGCATACTACATTGACCTCAGCATTGCCAT
gi|1 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacaT-----ATTAGTTGT-GC-ATTG-TGT-T----------AT-TT-G---GCAAA-----TAACA---AAT-AA----ACCAGGGGTTTTCGGTCCA--TATGT-------------A-------------ACTGGGTA-GTC---agtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|10 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataatataacgagttaatacacagtattttggtccaaatgcaagtctacgaactggacaatcaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctC-A-----GGCC-TGGT-----CCAA------TATAAAACTGGCGATGACATCATCCAATCCAGTATAC-AAAATGTGGAAATAT-TTCAATAT--AC-----AAGC-ACAT---------------GTT-----CGAGTGGA----------------TT-T-----GTTATTTTC-AG-GTTG-TGT-T-G-A--AT--AT-tttgcacttaatgttatgttttgctggtttaaca
gi|11 : tgatCGTTTTCACATTT--CCTTTTTTGTACAATACGACG-CC----ACCCAGT-CAATACGCAAGTATATGTGGACAG-----GGGC-CGAT-----CCTA------TATACAACCGGGAATGACGTatatatatatata
gi|12 : actactaaactgacgtaaatggttataccaCAGTCCA--TATAC-------------CATTC-TAGGTCTGACTGACCA-GTT---A---GTAAA-CTTGCAT-----ATTGCCCTCAGCA---CCATGTATTGTTTGCTA
gi|13 : TTACATATTT--CATTCTTTGTTTAATGTAAGG-AC----ATCCGGT-CAATGTA-----A---GTATAT-GTAAAAAAAC-CGGT-----CCAA------TGTAAAActggctgaatatgt
gi|14 : tataTCATTTTAATATTT--CCTTCTTTGTCCAATGAGACT-TC----ATCAGGTCCAATATACAtg
gi|14 : ataccGACTTCATCAGGTCCAATATAC-AGAATGTGgaatgtg
gi|15 : atacctcattttaatatttccttctttgtccaatgaCACATTT--CCTTCTTTTTTCAATGTGACATCC----ATCCAGT-CGATATA-AATTA---GTATA
gi|16 : TAAA-CTTGCAT-----ATGAACCTCAACA---CCATGTATT-TCTGTT
gi|2 : TCATTTTCACACTT--TCTTCTTTGTTCAATGTGATA-TCTATCATCAAGT-CAGTATATAAGTA----TGT---------GGAC-TAGT-----CCAAGTCCATTATAAA-CTGGGGATGATGTCATCAAACCCATTACAC-AAAATATAGAAGTAT-TTCAATAT--GC-----AAAC-ATATCCG--AA-CAGT-GCATTATGCCCAATTGAAATC-AC-------AAATC-T-----TTTCTTTTA-AT-ATTATTGT-T-TGG--AT--AT--------ATAAA--A--TAACA---AAT-TATATTTACCTGGTGTTTCAGTCCT--AATGtgttttgc
gi|2 : aaacttctactatataaataaaccTAACATAATTAACA---AAA-AA-----ACATGGTGATTCAGTCCA--C-------------------GTT-TACG---GACTGGGCA-GTC---tcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatgactgcccagtccgtaaacgtggactgaatcaccatgtttttttgttaattatgttaa
gi|3 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcat-CAATATAT---TT---GTATAT-G-----TGAC-CGGTTTGGTCCAA------TATAAATATGGGGATGACGTCATGCAGTCCAATATAC-AAAATGTGTAAGTAT-TTCAATAT---C-----AA------------AA-GGGT-GAGTTATGTCCAAATGGAA-C-ACA------GAATTGT------TTGTTTTG-GT-ATTG-TAT-T-TGA--AT--AT-TA-G---GTAAAATA--TAACA---AAT-AA----TACATTGTGTTTTGGTTCATTAATTC-------------AAGTT-TATG---GACTGGTCATGTC---C---ATAAa
gi|3 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcc---GACTACTAA-GTT---C---ATAAA-CTTGCAT-----ATGGACCTCAATA---CCATGTATTATTTGTTAGATATAtattctatctaggtctgactactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|4 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtctTTATTTAAACATTT--CCTTTTTTGTTTAATGTGACA-AT----ATTCGGT-CAATATATTATTA---ATATAC-G-----GGAC-TGGT-----CCAA------TATAATATGGAAGATGATTTC-CCCAGTTCACTATAC-AAAATGTGTAAATGT-TTCAATAT--GC-----AAAC-ATATCT---AA-AGTTTGTATTATGCCTTAATTGAA-A-AT-------TAATTGAAAAAAGTTAGTTTT-AT-ATTG-TGT-T-TTA--ATG-AT-TTCA---GTAAAATA--TAACT---AAT-AA----TACATGGTGTTTCAGTCCA--AATGC-------------AAGTT-TATT---GACTGGGCA-GTC---C---ATAAA-CTTGCAT-----TTGGACCAAAACA---CCATGTAGTATTTGTTAAATGTAt
gi|5 : T-----GTTATTTTTTGT-ATTG-TGT-CAG-G--AT--ATATT-GTTTATGAAATA--CAAC------T-AA----TACGTTGTATTTCGGTCCA--AAATT-------------AAGTT-TACA---GACTTGGCA-GTCAGACCTAGTAAG-TT---AT-----ATAGATCCCAGC
gi|5 : ttATTGC-----ATCATTTTC-TTTATTT-TGTGT-T-A--A-------------GTAACATAACTAACA---AAT-AA----AACATCGTATTGATGTCCA--CATGT-------------AAGTT-TATG---GACTGGACA-G-------------A-CATAC-T-----ATGGACCttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|6 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgatttTATAAG-A---AT---C-G-----GGCC-CGAT-----TCAG------TATAGTACAAGGGATGACATTATTCGGACAAATATAC-AAAATGTGTAAGTAT-ATTAATAT----------------------------------TCATGCCTAAATGGAA-CGAC-------ACATT-T-----ATTAGTTTT-GT-ATTA-TGT-T-TCA--ATGTAT-TT-C---ATATAATA--TAAAA---AAT-AG----GATGAGGTGTTTTGGTCCA--AATGCAGTCGGGCCTACAAAGTTGTATG---GACC--TCC-GTC---C---GTCAA--TTGCAT-----ACGTTCCTAATCA---TCATATATTAATTGTTAAATATaagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|7 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGA-TTCATCCAGTCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGGGC-ATACTATGCCC------AA-C-AG-------GA--TG------GTTATTTTT-GT-ATTG-TTA-T-C-AATAT--AT-TC-G---G-----TA--TAACAGATAAT-GA----TATATGGTGCTTCAGTtt
gi|8 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGA-TTCATCCAGTCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGGGC-ATACTATGCCC------AA-C-AG-------GA--TG------GTTATTTTT-GT-ATTG-TTA-T-C-AATAT--AT-TC-G---G-----TA--TAACAGATAAT-GA----TATATGGTGCTTCAGTt
gi|9 : ACTTCATCAGGTCCAATATAC-AGAATGTGCAAG-ATGTTCGCTATTCGC-----A-TT-ATATTTCAAAA-GAAT-GTGTTTTGCCCGAATCAAA-CCAT-------ACATT-T-----GTTATTTTC-AT-ATTG-TG--------------T-TT-G---ATAATATA--TATCA---AAT-GA----TTCATTGCGTTTTGGTCCT--TTTAC-------------AAATT-CAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTGGAAGAAGTTAGATATCATTCAGTTGATGTCCTTTGT
Unaligned ( gi|18 ): TTTATAATTTTAATCTGGTATTGCAAAATATCAAAATA
Alignments
lowQualScore : 11111111 2222222222222222222222 11111 111111 666666666666666666666666666666666666666666666666666666666666666666666666666 3333333333333333333333 111 2222222222222 22222222 11111 111
lowQualScore : 77 33333333 5 2222222222222222222222 1 8 00000 111111 11 66 1 4 4 1 999999999999999999999999999999999999999999999999999999999999999999999999999 55 3 3 3 6666666666666666666666 44 99 111 3 88888 666 2222222222222 4 2 777 1 4 00000000 5 0 22222 0 111 3
lowQualScore : .. ........ . ...................... . . ..... ...... .. .. . . . . ........................................................................... .. . . . ...................... .. .. ... . ..... ... ............. . . ... . . ........ . . ..... . ... .
lowQualScore : 99 99999999 0 4444444444444444444444 6 0 00000 555555 00 55 2 0 4 7 444444444444444444444444444444444444444444444444444444444444444444444444444 55 3 3 3 3333333333333333333333 33 22 777 3 55555 000 0000000000000 0 7 000 0 0 55555555 0 4 55555 4 777 8
consensus : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACNTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
Reference ( family-321 ) : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACNTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
gi|1 : TTATTTTC---TTTTGCATTATTTGTTAAATATGACA-TC----ATCCGGT-CAATATA--AG-A---ATAT---------GGAC-CGG---------G------TATGAAA------------TCATCCAGTCCAATA-ACGAAAACGTGT---TGT-TT---TAT--TCTTTAAAATCTGCATTC---------C-GTGTTTT--TCAAAGGGTT-C-ATTTTATTTAAATT-T-----GTTATTTTC-AT-ATTG-AGT-T-T-G--ATT-AT-TT-------ATAATA--TAACG---AGTTAA----TACACAGTATTTTGGTCCA--AATGC-------------AAGTC-TACG---AACTGGACA-ATC---------AAATCCAGCATACTACATTGACCTCAGCATTGCCAT
gi|1 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacaT-----ATTAGTTGT-GC-ATTG-TGT-T----------AT-TT-G---GCAAA-----TAACA---AAT-AA----ACCAGGGGTTTTCGGTCCA--TATGT-------------A-------------ACTGGGTA-GTC---agtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|10 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataatataacgagttaatacacagtattttggtccaaatgcaagtctacgaactggacaatcaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctC-A-----GGCC-TGGT-----CCAA------TATAAAACTGGCGATGACATCATCCAATCCAGTATAC-AAAATGTGGAAATAT-TTCAATAT--AC-----AAGC-ACAT---------------GTT-----CGAGTGGA----------------TT-T-----GTTATTTTC-AG-GTTG-TGT-T-G-A--AT--AT-tttgcacttaatgttatgttttgctggtttaaca
gi|11 : tgatCGTTTTCACATTT--CCTTTTTTGTACAATACGACG-CC----ACCCAGT-CAATACGCAAGTATATGTGGACAG-----GGGC-CGAT-----CCTA------TATACAACCGGGAATGACGTatatatatatata
gi|12 : actactaaactgacgtaaatggttataccaCAGTCCA--TATAC-------------CATTC-TAGGTCTGACTGACCA-GTT---A---GTAAA-CTTGCAT-----ATTGCCCTCAGCA---CCATGTATTGTTTGCTA
gi|13 : TTACATATTT--CATTCTTTGTTTAATGTAAGG-AC----ATCCGGT-CAATGTA-----A---GTATAT-GTAAAAAAAC-CGGT-----CCAA------TGTAAAActggctgaatatgt
gi|14 : tataTCATTTTAATATTT--CCTTCTTTGTCCAATGAGACT-TC----ATCAGGTCCAATATACAtg
gi|14 : ataccGACTTCATCAGGTCCAATATAC-AGAATGTGgaatgtg
gi|15 : atacctcattttaatatttccttctttgtccaatgaCACATTT--CCTTCTTTTTTCAATGTGACATCC----ATCCAGT-CGATATA-AATTA---GTATA
gi|16 : TAAA-CTTGCAT-----ATGAACCTCAACA---CCATGTATT-TCTGTT
gi|2 : TCATTTTCACACTT--TCTTCTTTGTTCAATGTGATA-TCTATCATCAAGT-CAGTATATAAGTA----TGT---------GGAC-TAGT-----CCAAGTCCATTATAAA-CTGGGGATGATGTCATCAAACCCATTACAC-AAAATATAGAAGTAT-TTCAATAT--GC-----AAAC-ATATCCG--AA-CAGT-GCATTATGCCCAATTGAAATC-AC-------AAATC-T-----TTTCTTTTA-AT-ATTATTGT-T-TGG--AT--AT--------ATAAA--A--TAACA---AAT-TATATTTACCTGGTGTTTCAGTCCT--AATGtgttttgc
gi|2 : aaacttctactatataaataaaccTAACATAATTAACA---AAA-AA-----ACATGGTGATTCAGTCCA--C-------------------GTT-TACG---GACTGGGCA-GTC---tcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatgactgcccagtccgtaaacgtggactgaatcaccatgtttttttgttaattatgttaa
gi|3 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcat-CAATATAT---TT---GTATAT-G-----TGAC-CGGTTTGGTCCAA------TATAAATATGGGGATGACGTCATGCAGTCCAATATAC-AAAATGTGTAAGTAT-TTCAATAT---C-----AA------------AA-GGGT-GAGTTATGTCCAAATGGAA-C-ACA------GAATTGT------TTGTTTTG-GT-ATTG-TAT-T-TGA--AT--AT-TA-G---GTAAAATA--TAACA---AAT-AA----TACATTGTGTTTTGGTTCATTAATTC-------------AAGTT-TATG---GACTGGTCATGTC---C---ATAAa
gi|3 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcc---GACTACTAA-GTT---C---ATAAA-CTTGCAT-----ATGGACCTCAATA---CCATGTATTATTTGTTAGATATAtattctatctaggtctgactactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|4 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtctTTATTTAAACATTT--CCTTTTTTGTTTAATGTGACA-AT----ATTCGGT-CAATATATTATTA---ATATAC-G-----GGAC-TGGT-----CCAA------TATAATATGGAAGATGATTTC-CCCAGTTCACTATAC-AAAATGTGTAAATGT-TTCAATAT--GC-----AAAC-ATATCT---AA-AGTTTGTATTATGCCTTAATTGAA-A-AT-------TAATTGAAAAAAGTTAGTTTT-AT-ATTG-TGT-T-TTA--ATG-AT-TTCA---GTAAAATA--TAACT---AAT-AA----TACATGGTGTTTCAGTCCA--AATGC-------------AAGTT-TATT---GACTGGGCA-GTC---C---ATAAA-CTTGCAT-----TTGGACCAAAACA---CCATGTAGTATTTGTTAAATGTAt
gi|5 : T-----GTTATTTTTTGT-ATTG-TGT-CAG-G--AT--ATATT-GTTTATGAAATA--CAAC------T-AA----TACGTTGTATTTCGGTCCA--AAATT-------------AAGTT-TACA---GACTTGGCA-GTCAGACCTAGTAAG-TT---AT-----ATAGATCCCAGC
gi|5 : ttATTGC-----ATCATTTTC-TTTATTT-TGTGT-T-A--A-------------GTAACATAACTAACA---AAT-AA----AACATCGTATTGATGTCCA--CATGT-------------AAGTT-TATG---GACTGGACA-G-------------A-CATAC-T-----ATGGACCttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|6 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgatttTATAAG-A---AT---C-G-----GGCC-CGAT-----TCAG------TATAGTACAAGGGATGACATTATTCGGACAAATATAC-AAAATGTGTAAGTAT-ATTAATAT----------------------------------TCATGCCTAAATGGAA-CGAC-------ACATT-T-----ATTAGTTTT-GT-ATTA-TGT-T-TCA--ATGTAT-TT-C---ATATAATA--TAAAA---AAT-AG----GATGAGGTGTTTTGGTCCA--AATGCAGTCGGGCCTACAAAGTTGTATG---GACC--TCC-GTC---C---GTCAA--TTGCAT-----ACGTTCCTAATCA---TCATATATTAATTGTTAAATATaagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|7 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGA-TTCATCCAGTCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGGGC-ATACTATGCCC------AA-C-AG-------GA--TG------GTTATTTTT-GT-ATTG-TTA-T-C-AATAT--AT-TC-G---G-----TA--TAACAGATAAT-GA----TATATGGTGCTTCAGTtt
gi|8 : A---GTATAT-G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGA-TTCATCCAGTCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGGGC-ATACTATGCCC------AA-C-AG-------GA--TG------GTTATTTTT-GT-ATTG-TTA-T-C-AATAT--AT-TC-G---G-----TA--TAACAGATAAT-GA----TATATGGTGCTTCAGTt
gi|9 : ACTTCATCAGGTCCAATATAC-AGAATGTGCAAG-ATGTTCGCTATTCGC-----A-TT-ATATTTCAAAA-GAAT-GTGTTTTGCCCGAATCAAA-CCAT-------ACATT-T-----GTTATTTTC-AT-ATTG-TG--------------T-TT-G---ATAATATA--TATCA---AAT-GA----TTCATTGCGTTTTGGTCCT--TTTAC-------------AAATT-CAt
blockSeqs : . ATCTATC C CAAGTATATGTGGACAG G G TTGGT GTCCAT CT CA A . G A GCAAACATATCTAAAGTTTGTATTATGCCTTAATTGAAAATTAATTGAAAAAAG TT T T G AGGATATATTGTTTAT CA AT GAT . TATTT TTA AGTCGGGCCTACA G G TCT G T AGACCTAG . . . A
blockSeqs : . ATCC . AGTATATGTAAAA G G . . CC CG G . . A TCGCATTATATTTCAAAAGAATGTGTTTTGCCCGAATCAAACCATACATTTG T . . . TTAATGATTTCAGT AA AC GAT . A T . . C . C . AG . . . A
blockSeqs : . GCC . TTATTAATATACG A . . . CT CT A . . A GCAAACATATCCGAACAGTGCATTATGCCCAATTGAAATCACAAATCTT C . . . TCAATGTATTTCAT AA . . . T T . . T . G . CA . . . A
blockSeqs : . GAC . TTTGTATATG G . . . AT TG A . . A GCAAGCACATCCCATGGGCATACTATGCCCAACAGGATGG A . . . TGAATATTAGGT AA . . . T A . . T . T . CA . . . .
blockSeqs : . TTC . TAAGTATGT G . . . TG CG A . . A GCAAGCACATCCCATGGGCATACTATGCCCAACAGGATGG G . . . CAATATATTCGG CA . . . T C . . C . T . CA . . .
blockSeqs : . AAT . TAAGAATCG G . . . CA TT G . . G CAAAAGGGTGAGTTATGTCCAAATGGAACACAGAATTGT T . . . CAATATATTCGG AA . . . A A . . T . G . CG . .
blockSeqs : . G . . . CT CA A . . G TCATGCCTAAATGGAACGACACATTTA C . . . TGGATATAT TA . . . G A . . T . G . . . .
blockSeqs : . . . . CT CT A . . G ACAAGCACATGTTCGAGTGGATTTG T . . . ATTTGGC A . . . T C . . . . A .
blockSeqs : . . . . T G . T . . . TTTGAT A . . . T A . . . T .
blockSeqs : T T . . . TAAGT . . . . T T
blockSeqs : C . . . . . . . .
blockSeqCons : ** TAAGTATACG************ CT CG TAATATATTTCGT********* CG****** ***** ***
originalCons : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTA---GTATAC-G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACNTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-A--AT--AT-TT-G---GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
finalCons : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATATATAAGTATACG------------GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACGTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-TTAATATATTTCGT---------AAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTCCG------TAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTGGAAGAAGTTAGATATCATTCAGTTGATGTCCTTTGT
Unaligned ( gi|18 ): TTTATAATTTTAATCTGGTATTGCAAAATATCAAAATA
Alignments
lowQualScore : 11111111 22222222222222222 11111 111111 1 666666666666666666666666666666666666666666666666666666666666666666666666666 3333333333333333333333 111 2222222222222 22222222 11111 111
lowQualScore : 77 33333333 5 66 7777 22222222222222222 8 00000 111111 11 1 1 4 4 1 999999999999999999999999999999999999999999999999999999999999999999999999999 55 3 3 3 3333333333333333333333 99 111 3 88888 666 2222222222222 4 2 777 1 4 00000000 5 0 22222 0 111 3
lowQualScore : .. ........ . .. .... ................. . ..... ...... .. . . . . . ........................................................................... .. . . . ...................... .. ... . ..... ... ............. . . ... . . ........ . . ..... . ... .
lowQualScore : 99 99999999 0 11 9999 22222222222222222 0 00000 555555 00 1 2 0 4 7 444444444444444444444444444444444444444444444444444444444444444444444444444 55 3 3 3 5555555555555555555555 22 777 3 55555 000 0000000000000 0 7 000 0 0 55555555 0 4 55555 4 777 8
consensus : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATAT--AT-A--AGTATAC-------G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACGTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-GATATATT--TC-GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
Reference ( family-321 ) : TCATTTTCACATTT--CCTTCTTTGTTCAATGTGACG-NC----ATCCGGT-CAATAT--AT-A--AGTATAC-------G-----GGAC-CGGT-----CCAA------TATAAAACTGGGGATGACGTCATCCGGTCCAATATAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---AA-GGGC-GTGTTATGCCCGAATGGAA-C-AC-------GAATTGT-----GTTATTTTC-GT-ATTG-TGT-T-T-AATATATT--TC-GTAAAATA--TAACA---AAT-AA----TACATGGTGTTTCGGTCCA--NATGC-------------AAGTT-TACG---GACTGGNCA-GTC---C---GTAAA-CTTGCAT-----ATGGACCTCAGCA---CCATGTATTATTTGTTAAATATA
gi|1 : TTATTTTC---TTTTGCATTATTTGTTAAATATGACA-TC----ATCCGGT-CAATAT--AA-G--AATAT---------------GGAC-CGG---------G------TATGAAA------------TCATCCAGTCCAATA-ACGAAAACGTGT---TGT-TT---TAT--TCTTTAAAATCTGCATTC---------C-GTGTTTT--TCAAAGGGTT-C-ATTTTATTTAAATT-T-----GTTATTTTC-AT-ATTG-AGT-T-T-GAT-TATT--T----ATAATA--TAACG---AGTTAA----TACACAGTATTTTGGTCCA--AATGC-------------AAGTC-TACG---AACTGGACA-ATC---------AAATCCAGCATACTACATTGACCTCAGCATTGCCAT
gi|1 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacaT-----ATTAGTTGT-GC-ATTG-TGT-T--------ATT--TG-GCAAA-----TAACA---AAT-AA----ACCAGGGGTTTTCGGTCCA--TATGT-------------A-------------ACTGGGTA-GTC---agtctttataacattctggatctgactacccagttacatatggaccgaaaacccctggtttatttgttatttgccaaataacacaatgcacaactaatatttgcacttaatgttatgttttgctggtttaaca
gi|10 : tatttaacaaattccagcaatgaagcaatcactcctatcgtaatttgtaacattgaattgatatacattattttcttttgcattatttgttaaatatgacatcatccggtcaatataagaatatggaccgggtatgaaatcatccagtccaataacgaaaacgtgttgttttattctttaaaatctgcattccgtgtttttcaaagggttcattttatttaaatttgttattttcatattgagtttgattatttataatataacgagttaatacacagtattttggtccaaatgcaagtctacgaactggacaatcaaatccagcatactacattgacctcagcattgccatagtctttataacattctggatctC-------A-----GGCC-TGGT-----CCAA------TATAAAACTGGCGATGACATCATCCAATCCAGTATAC-AAAATGTGGAAATAT-TTCAATAT--AC-----AAGC-ACAT---------------GTT-----CGAGTGGA----------------TT-T-----GTTATTTTC-AG-GTTG-TGT-T-G-AATATATtttgcacttaatgttatgttttgctggtttaaca
gi|11 : tgatCGTTTTCACATTT--CCTTTTTTGTACAATACGACG-CC----ACCCAGT-CAATAC--GC-A--AGTATATGTGGACAG-----GGGC-CGAT-----CCTA------TATACAACCGGGAATGACGTatatatatata
gi|12 : actactaaactgacgtaaatggttataccaCAGTCCA--TATAC-------------CATTC-TAGGTCTGACTGACCA-GTT---A---GTAAA-CTTGCAT-----ATTGCCCTCAGCA---CCATGTATTGTTTGCTA
gi|13 : TTACATATTT--CATTCTTTGTTTAATGTAAGG-AC----ATCCGGT-CA--AT--GT-A--AGTATAT-------GTAAAAAAAC-CGGT-----CCAA------TGTAAAActggctgaatatgt
gi|14 : tataTCATTTTAATATTT--CCTTCTTTGTCCAATGAGACT-TC----ATCAGGTCCAATAT--AC-A--tg
gi|14 : ataccGACTTCATCAGGTCCAATATAC-AGAATGTGgaatgtg
gi|15 : atacctcattttaatatttccttctttgtccaatgaCACATTT--CCTTCTTTTTTCAATGTGACATCC----ATCCAGT-CGATATAAAT-T--AGTATA
gi|16 : TAAA-CTTGCAT-----ATGAACCTCAACA---CCATGTATT-TCTGTT
gi|2 : TCATTTTCACACTT--TCTTCTTTGTTCAATGTGATA-TCTATCATCAAGT-CAGTAT--AT-A--AGTATGT-------G-----G-AC-TAGT-----CCAAGTCCATTATAAA-CTGGGGATGATGTCATCAAACCCATTACAC-AAAATATAGAAGTAT-TTCAATAT--GC-----AAAC-ATATCCG--AA-CAGT-GCATTATGCCCAATTGAAATC-AC-------AAATC-T-----TTTCTTTTA-AT-ATTATTGT-T-TGGATATA--------TAAA--A--TAACA---AAT-TATATTTACCTGGTGTTTCAGTCCT--AATGtgttttgc
gi|2 : aaacttctactatataaataaaccTAACATAATTAACA---AAA-AA-----ACATGGTGATTCAGTCCA--C-------------------GTT-TACG---GACTGGGCA-GTC---tcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcatgactgcccagtccgtaaacgtggactgaatcaccatgtttttttgttaattatgttaa
gi|3 : aaacttctactatataaataaacctcattttcacactttcttctttgttcaatgtgatatctatcatcaagtcagtatataagtatgtggactagtccaagtccattataaactggggatgatgtcatcaaacccattacacaaaatatagaagtatttcaatatgcaaacatatccgaacagtgcattatgcccaattgaaatcacaaatcttttcttttaatattattgtttggatatataaaataacaaattatatttacctggtgtttcagtcctaatgtcactatatgaatcaaagcaaaagctggggtctgaccattctagctaggcat-CAATAT--AT-T--TGTATAT-------G-----TGAC-CGGTTTGGTCCAA------TATAAATATGGGGATGACGTCATGCAGTCCAATATAC-AAAATGTGTAAGTAT-TTCAATAT---C-----AA------------AA-GGGT-GAGTTATGTCCAAATGGAA-C-ACA------GAATTGT------TTGTTTTG-GT-ATTG-TAT-T-T-GA-ATATT--AG-GTAAAATA--TAACA---AAT-AA----TACATTGTGTTTTGGTTCATTAATTC-------------AAGTT-TATG---GACTGGTCATGTC---C---ATAAa
gi|3 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcc---GACTACTAA-GTT---C---ATAAA-CTTGCAT-----ATGGACCTCAATA---CCATGTATTATTTGTTAGATATAtattctatctaggtctgactactaagttcataaacttgcatatggacctcaataccatgtattatttgttagatatat
gi|4 : gtttaagacatatttcagagaaaacaataacaaatttttataatatatcaaatttcattttacatttttgcccaatatatttgtatatgtgaccggtttggtccaatataaatatggggatgacgtcatgcagtccaatatacaaaatgtgtaagtatttcaatatcaaaagggtgagttatgtccaaatggaacacagaattgtttgttttggtattgtatttgaatattaggtaaaatataacaaataatacattgtgttttggttcattaattcaagtttatggactggtcatgtccataatattctatctaggtctTTATTTAAACATTT--CCTTTTTTGTTTAATGTGACA-AT----ATTCGGT-CAATAT--ATTATTAATATAC-------G-----GGAC-TGGT-----CCAA------TATAATATGGAAGATGATTTC-CCCAGTTCACTATAC-AAAATGTGTAAATGT-TTCAATAT--GC-----AAAC-ATATCT---AA-AGTTTGTATTATGCCTTAATTGAA-A-AT-------TAATTGAAAAAAGTTAGTTTT-AT-ATTG-TGT-T-TTAATG-ATT--TCAGTAAAATA--TAACT---AAT-AA----TACATGGTGTTTCAGTCCA--AATGC-------------AAGTT-TATT---GACTGGGCA-GTC---C---ATAAA-CTTGCAT-----TTGGACCAAAACA---CCATGTAGTATTTGTTAAATGTAt
gi|5 : T-----GTTATTTTTTGT-ATTG-TGT-CAG-GATATATTGTTT-ATGAAATA--CAAC------T-AA----TACGTTGTATTTCGGTCCA--AAATT-------------AAGTT-TACA---GACTTGGCA-GTCAGACCTAGTAAG-TT---AT-----ATAGATCCCAGC
gi|5 : ttATTGC-----ATCATTTTC-TTTATTT-TGTGT-T-AA-----------GTAACATAACTAACA---AAT-AA----AACATCGTATTGATGTCCA--CATGT-------------AAGTT-TATG---GACTGGACA-G-------------A-CATAC-T-----ATGGACCttcgatttggtccatagtatgtctgtccagtccataaacttacatgtggacatcaatacgatgttttatttgttagttatgttacttaacacaaaataaagaaaatgatgcaataagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|6 : tttgttattttttgtattgtgtcaggatatattgtttatgaaatacaactaatacgttgtatttcggtccaaaattaagtttacagacttggcagtcagacctagtaagttatatagatcccagcttcgatttT--AT-A--AGAAT-C-------G-----GGCC-CGAT-----TCAG------TATAGTACAAGGGATGACATTATTCGGACAAATATAC-AAAATGTGTAAGTAT-ATTAATAT----------------------------------TCATGCCTAAATGGAA-CGAC-------ACATT-T-----ATTAGTTTT-GT-ATTA-TGT-T-TCAATGTATT--TC-ATATAATA--TAAAA---AAT-AG----GATGAGGTGTTTTGGTCCA--AATGCAGTCGGGCCTACAAAGTTGTATG---GACC--TCC-GTC---C---GTCAA--TTGCAT-----ACGTTCCTAATCA---TCATATATTAATTGTTAAATATaagcgacgcaatgtttacttacacgttatatcctgcggtgctctaaga
gi|7 : --AGTATAT-------G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGAT-TCATCCAGTCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGGGC-ATACTATGCCC------AA-C-AG-------GA--TG------GTTATTTTT-GT-ATTG-TTA-T-C-AATATA-T--TC-G----GTA--TAACAGATAAT-GA----TATATGGTGCTTCAGTtt
gi|8 : --AGTATAT-------G-----G-ACGTGCT-----CCAA------TATAAGACTGGGGATGAT-TCATCCAGTCAAATTTAC-AAAATGTGTAAGTAT-TTCGATAT--GC-----AAGC-ACATCC---CATGGGC-ATACTATGCCC------AA-C-AG-------GA--TG------GTTATTTTT-GT-ATTG-TTA-T-C-AATATA-T--TC-G----GTA--TAACAGATAAT-GA----TATATGGTGCTTCAGTt
gi|9 : ACTTCATCAGGTCCAATATAC-AGAATGTGCAAG-ATGTTCGCTATTCGC-----A-TT-ATATTTCAAAA-GAAT-GTGTTTTGCCCGAATCAAA-CCAT-------ACATT-T-----GTTATTTTC-AT-ATTG-TGT-T-T-GATA-AT-----------ATA--TATCA---AAT-GA----TTCATTGCGTTTTGGTCCT--TTTAC-------------AAATT-CAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTGGAAGAAGTTAGATATCATTCAGTTGATGTCCTTTGT
Unaligned ( gi|18 ): TTTATAATTTTAATCTGGTATTGCAAAATATCAAAATA