lowQualScore : 111111111 11111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 1 22 4 333333333 11111111111111111111111111111111111111111111111111111111111 222 999999999999999999999999999999999999999999999999999999999999999 222 1 1 4444444444444444444 1 1 1 111 222 11 11 22 1 111111 33333333333333 11 1 2 6666666 2 333 1 4 1 4 4444 4444444444 1111 555555555 1111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 4444444444444 1 2222 2 1 4 1 22 8888 4444 1 1 4 1 555555555555555555555 11 66666666666666666666666666666666666 111 1 1 2 1 666666666
lowQualScore : 6 7 33 0 6 888888888 22222222222222222222222222222222222222222222222222222222222 000 4 3 000000000000000000000000000000000000000000000000000000000000000 2 4 555 3 3 6666666666666666666 5 5 2 6 6 2 111 777 2 33 22 2 11 8 3 1 6 1 000000 99999999999999 0 8 3 0 11 88 4 0 4 8 0 3 2 5555555 0 555 3 6 5 0 6 7 6 0 6 1111 3 5555555555 2 5555 777 55 3 88 222222222 4 2 5555 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 777 6666666666666 3 3333 3 0 2 5 2 4 6 0 5 6 11 6 5555 4444 6 5 5 6 0 7 6 555555555555555555555 0 6 8 3 44 88888888888888888888888888888888888 2 3 444 3 0 77 8 999 3 4 3 6 0 6 1 0 666666666 3
lowQualScore : . . .. . . ......... ........................................................... ... . . ............................................................... . . ... . . ................... . . . . . . ... ... . .. .. . .. . . . . . ...... .............. . . . . .. .. . . . . . . . ....... . ... . . . . . . . . . .... . .......... . .... ... .. . .. ......... . . .... ................................................................................................. .. ... ............. . .... . . . . . . . . . . .. . .... .... . . . . . . . ..................... . . . . .. ................................... . . ... . . .. . ... . . . . . . . . ......... .
lowQualScore : 0 0 00 0 0 000000000 00000000000000000000000000000000000000000000000000000000000 555 0 0 000000000000000000000000000000000000000000000000000000000000000 5 0 000 3 3 3333333333333333333 7 7 0 0 0 2 222 555 0 88 22 5 00 2 2 4 6 4 000000 22222222222222 6 0 8 8 00 44 2 0 7 3 0 0 5 0000000 0 000 0 0 0 0 0 0 0 0 0 0000 0 5555555555 5 4444 000 55 9 44 111111111 0 5 8888 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44 555 0000000000000 3 0000 0 0 5 0 5 0 0 0 0 0 00 0 0000 0000 0 0 0 0 0 0 0 333333333333333333333 2 0 0 2 22 00000000000000000000000000000000000 2 5 000 5 8 00 4 888 7 7 3 5 2 0 8 0 888888888 0
consensus : NNGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTCCGGGTCATAACTCCANANCCGANNNNNNNNN-----------------------------NNNNNNNNNNNNNNNNNNNNNNNN-CACCATGGAAACAAATAGNAANAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATNATTAAACAAACACNTAATGGAAATATAATTT--TGTTTAAATTGAGCATACATAGTTCATGNAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAAAC-TAACGNTATTGAGGTGGAACNGTNTTTAACACGACTATTTTTGCATCGGCGTCCTACCCACGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGATAATTTGAAGNTAATATAGTGTTTCTTCCNGTAGA-CTGAAGTTA---GTTTGATATT--CGT-GTTTCGG--T--NTT-CGATATTC--AACATGAAACT----A-CA------CTAACA--AATTCTAGCCGTA--ACCCT---AGCCTCCAAT-TTGAAGA-GTTTCGC-CTTTAAATATCGAAAGATA--GAAANACGAATATCAAACTAACTTCTAACTGCT---TG-A-TCTTC-ATT-TTAC-ATTTACAGCCACCAATAANATGNCGTAAGATTNCTATNATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTAGATTTCTGTAGATCAACATGCGCTTGGAACATGCATATACATGTATATAACGTGCTTACGATTTAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGGCGTC-TTTTTCTAA-TTTTCTGCGGATAAAAA-GCGTCATGCGGACAAAAGGCGTCATTTTTC--T---A---T--TTTT-CGGATANAAAGCGTC-ATGCGGACAAAAAGCGTCATTTTTC--CAAATTTTCTGCGGATAAAAGGCGTC-ATGCGGACAAAANTCGACGNTTTTC-TTTTTTTTCTGCGGATAAAAAGCGTTGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACAG---ACGAGCACGNCCAAT
Reference ( gi|1 ) : GGGAGGTGCATAATAGCAAAATTTTCCGTTTCC-------AACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNN-CACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAAAAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTT--TGTTTAAATTGAGCATAAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---CTGAAGATAATATAATGTTTTTTTCGGTAGA-GTTAAGTTA---GTTTGATATT--CAT-ATTT--A--T--ATT-CGATATTC--ACCATGAACCT----AACA------CTAACACTAATTCTAGTCCTA--ACCAT---AGCCTCCAAT-TTGAAGA-GTTTCTC-CTTTAAATATCAAAAGGTA--GAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATT-TTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTAGATTTCTGTAGATCAACATGCGCTTAGAACATGCATATACATGTATATAACTTGCTTACGATTGAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGAGTATATTTACTGAGTTGAAATACTGTTACAAGATACCTCCACCACTCTAACTTGCCTCGACCACAACTTATCTGTGACAGTAGATTGAACAAAATATATATTATCTTGCAGGCATGCAGATTTAATTCGTGTAAACTAAAATTAAAGATAACTGTATTCCATATAATGCGGATAAAAG---ACGTCATTTTTCTAAACTTTCTGTGGATAAAAG-GCGTCATGCGGACAAAAGACGTCATTTTTC--C---AAAGT--TTCTGCGGATATAAGGCGTC-ATGCGGACAAAAGGCGTCATTTTTC--CAAATTTTCTGCGGATAAAAGTCGTC-ATGCGGACAAAAGTCGACGATTTTC-TTTTTTTTCTGCGGATAAATAGCGTTGCGGACAAAAAGCGTCAAGCGGACAAAAAGTGCATGC-ACAATCGACGGACACGATCAATAACCCACATGCTAAGATTACAGATAGTATTG
gi|4 : GGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA---------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTT--TGTTTAAATTGAGCATACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAA-----ATAT--CAATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGG
gi|2 : GCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATG----GAAAAAAAAGCTGTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTT--TGTTTAAATTGAGCATACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGA-GTTAAGTTG---GTTTGATATT--AAT-CTTTG-A--T--ATT-CGATATTC--ATCATGAACCT----AACACTAATCCTAACCCTAATTCTAGCCGTA--ACACT---AACCTCCAAT-TTGAATA-GTTTCTC-CTTTTAATATCAAAA--T-----------AATATCAAACTAACTTCTAACTACT---TGTA-TTTTCAATT-TTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACAC-TTATGGAAATATAATTT--TTTTTAAATTGAGCAAACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-tttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|6 : CAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGA----CGCATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-G----CCGGAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|14 : gAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAAT--------------AGTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATTAT
gi|10 : acAACTGACAATAATTTAAAACTAATA--AT------TCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCT-ATTTC-G--T--CTTTCGATATT-----------CC---------------------------CTAGTCGTA--ACCTTGTCAGTCTCCAATACTGAAGA-GTTGCGCACTTAAAATAT-AGAA--TAACGAAAAACGAAAATCAAACTTACTTCAAACT
gi|12 : GTAGA-CCGAAATTA---GTTTGATATTTTCGT-GTTTTGA--C--TTT-TCATATTC--TACATGAA----------A------CTAACACTAATCCTAGCCTT----CTCT----GCCACCAATATTGAAGA-GTT---C-CTT-----------------------GCAAATATCAAATTAACTTCTAACTACTGTCTGAAGTCTTC-CTA-TTAC-ATTTtc
gi|9 : GTCGA-CTGAAGTTA---GTTTGCTGTT--CGTTATTC--GC-T--TTT-CGATATTT--TACATAAAACT----ATCAAAG---CTAACA----TTCT----------CC------GTCTCCAAT-TTTAGAATGTTTCACACTTT-CATATTGAAAGATA---AAACACGAATACCAAACTAACACATAACTGGC---TG---------ATTATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAA
gi|15 : AGA-CTGAAGTTA---GTTTGATATT--CGT-CTTTCGA--T--ATT-CGATATTC--ATCATGAAGTT-------A------CGA----------TAATCCTA--ACC-T-----------------AAGA-GTTATGC-C-----ATATCAAAAGA-A--GAAAAACGAATATCAAACTAACTTCCTACTa
gi|15 : cAAGTTA---GTTTGATATT--CGT-TTTT--C--TTCTTT-TGATAT
gi|13 : cagactgaagttagtttgatattcgtctttcgatattcgatattcatcatgaagttacgataatcctaacctaagagttatgccAAGTTA---GTTTGATATT--CGT-ATTT--CGTT--TTT-CGATATTTAAACCATcctact
gi|17 : acgactggagttagatcggtttcgtcatgtttgacatgaaactgcagctaaccctatatttttgcatctatggtattaaAAATAA---ATTTAGTATT--CAT-GTTTCGG--C--TTT-CTATATTC--AACATGAAACT----AGCA------TTTACAgtatctgcttg
gi|9 : agacggGTTA---GTTTGGTATT--CGT-GTTT-----T--ATC-T----TTC--AATATGAAAGTGTGAAACATT----CTAA----AATTGGAGACGGAGAATGTT---AGC------T-TTGA-TA-GTTT-TA-TGTAAAATATCGAAAAGC---GAATAACGAACAGCAAACTAACTTCgttaccttct
gi|19 : gtcgactTTA---GTTTGATATT--CGT-GTTTCGA--C--AAT-CCATATTC--AACGTGAAacataactggctgattattgcgatttatagcaataacatgactaagatttttattataaa
gi|13 : ggcaaactaacaTTTAAATATCGAAAAAC---GAAATACGAATATCAAACTAACTTGTATCTGCT---TG
gi|15 : acgactggagttagatcggtttcgtcatgtttgacatgaaactgcagctaaccctatatttttgcatctatggtattaaatggTGAATATCGAA---TATCGAAAGACGAATATCAAACTAACTTC
gi|2 : cagactTGTCTAGATTTCTGTAGATCAACATGCGCTTGGAACATGCATATACATGTATATAACGTGCTTACGATTTAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtcatgaagttacgataatcctaacctaagagttatgccatatcaaaagaagaaaaacgaatatcaaactaacttcctact
gi|3 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgATGCGGACAAAAGTCGACGTT-TTTTTCTAACTTTTCTGCGGATAAAAG-GCGTCATGCGTACAAAAGGCATCATTTTTC--T---A---T--TTTT--------------TC--TGCGGACAAAAGGCGTCATTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTC-ATGCGGACAAAAATCGACGATTTTCTTTTTTTTTCTGCGGATAAAAAGCGTTGCGGACAAAAAGctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|11 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTGCGGATAAAAA---GCGT-----------------TGCGGACAAAAA-GCGTCAAGCGGACAAAAAGCGtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|2 : CGACGTTTTTCTAAATATTCGGCGGATAAAAG-GCGTCATGTGGACAAAAGGCGTCATTTTTCTTC-------T--TTTT-----TTT------TC--TGCGGACAAAAGGCGTCATTTTTC--CAAATTTTCTGCGGATAAAAGTTGTC-ATGCGGACAAAAGTCGACTGTTTTC-TTTTTTTTATTTGGATAAGGAGCGTTGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-Acttgcacacacgctcaattgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|8 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTTTTGCAGACAAAAATATGCTATGCGGACAGAA--------TTTGC--TGGAAAAGGAATTAT----ATATAAGCCCTTGATGAGGACAAAATTCGTCGTTATTC--CTAACTAACTGCGGACAAAAAGCGTC---GGGGACAAAA
gi|11 : tTGCGGATAAAAA-GCGT--TGCGGACAAAAAGCGTCAagtgtcaagtggacaagaaacgccgctacaaacgagcatgactaatgtcagtactcagttatatctactattc
gi|11 : TGCGGATAAAAAGCGT---TGCGGACAAAAAGCGTCAagcggacaaaaagcgcttgcacacacgctcaattgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|20 : TACGGACAAAAAGGGTC-AAGCGGACAAAAAGCagcggacaaaaagcgcttgcacacacgctcaattgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|11 : TGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTC-AAGCGGACAAAAacctgcacagtc
gi|8 : ATATAAGCCCTTGATGAGGACAAAATTCGTCGTTATTC-CTAACTAACTGCGGACAAAAAGCGTCGGGGACAAAAAGTGTCAAGTGGACAAGAAACGC-CGCTACAA---ACGAGCATGACTAATagcgcttgcacacacgctcaattgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|11 : ttttttgcagacaaaaatatgctatgcggacagaatttgctggaaaaggaattatTGCGGATAAAAAGCGTTGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCTTGC-AC---------ACACGCTCAATgtcagtactcagttatatctactattc
gi|20 : TACGGACAAAAAGGGTCAAGCGGACAAAAAGCACCTGC-ACAGTCtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|16 ): GTCAGACAGAAATTAATTGATGGTCATGTTTCACTTTTCGATATTCAACAAGAAAACGCCACACCTTAACCTTTCCAGTCTCGATTATTGACGATCTACACAATTTGATATTGAAAAACAA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111
lowQualScore : 2 3333333 88888888888888888888888888888888888888888888888888888888888 777777777777777777777777777777777777777777777777 1 44444444 11 2 6666666 22 3333 1 2 333 1 111 00000000000000000000000000000000000000000000000000000000 2 33333333333 222 111 33333333333 1 2 1 4444 11 1111 111 33333333 11 11 11 11 11 1 1111 333 2 444444444444444444 2222222 888888888888888888888 111111 11111111111 333333333333333333 1111 111111 44444444444444444 666666666666666666666666 222222222
lowQualScore : 4 4 0 0000000 4 44444444444444444444444444444444444444444444444444444444444 7 6 1 1 888888888888888888888888888888888888888888888888 1 1 3 0 3 88888888 0 0 0 3 1 1 0 11 8 0 1 5 1 6 3 1 3 99 5 6 1 99 33 1 8 1 3 0 11 1 4444444 44 0 0 7777 0 6 2 5 4 0 777 1 7 2 3 0 1 4 777 55 0 1 222 2 33 00 66666666666666666666666666666666666666666666666666666666 66 0 5 22222222222 33 1 222 5 444 55555555555 4 0 77 1 3 1 6 0 1 1 5 3 3 2222 4 3 88 7 4444 3 0 777 66666666 33 33 3 9 33 33 333 3 33 5 4 3333 333 4 8 8 999999999999999999 6 2 1 5555555 111111111111111111111 777777 88888888888 666666666666666666 1 5 2 0 2 5555 333333 33333333333333333 111111111111111111111111 8 777777777 11
lowQualScore : . . . ....... . ........................................................... . . . . ................................................ . . . . . ........ . . . . . . . .. . . . . . . . . . .. . . . .. .. . . . . . .. . ....... .. . . .... . . . . . . ... . . . . . . . ... .. . . ... . .. .. ........................................................ .. . . ........... .. . ... . ... ........... . . .. . . . . . . . . . . .... . . .. . .... . . ... ........ .. .. . . .. .. ... . .. . . .... ... . . . .................. . . . ....... ..................... ...... ........... .................. . . . . . .... ...... ................. ........................ . ......... ..
lowQualScore : 0 0 0 5555555 0 55555555555555555555555555555555555555555555555555555555555 3 7 0 0 000000000000000000000000000000000000000000000000 0 0 5 0 2 88888888 2 2 2 5 0 0 8 00 0 8 0 2 0 7 2 0 2 22 2 7 7 22 88 8 0 0 7 7 77 0 3333333 00 7 7 7777 7 7 5 5 0 0 777 0 3 0 7 7 0 0 000 55 7 6 333 5 66 88 66666666666666666666666666666666666666666666666666666666 99 0 0 11111111111 66 1 444 0 000 55555555555 0 0 33 0 7 0 7 7 0 0 5 0 0 5555 0 0 33 0 8888 2 2 222 22222222 88 88 2 8 88 88 555 2 88 5 0 4444 000 0 0 0 222222222222222222 7 8 3 3333333 444444444444444444444 444444 77777777777 999999999999999999 4 0 8 5 8 6666 666666 33333333333333333 888888888888888888888888 0 333333333 77
consensus : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACG---ATTTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-A-CA---CT-A--------C---AATTCTAGCCNTAACC---CT---A-------GCCTCCA--ATATTGAAGA-GTTTCGC-CTTT-AATATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA--TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTTATTTTTCTAAATT-TT-CTGCG------------------GATAAAAGGCGTCATGCGGACAAAAGNCGTCGTTTTTCT---A---TTTTT-C---GGATANAAG-GCGTCATGCGGACAAAAGG----CGTCATTTTTC--CA-------AATTTTCTGCG------------------GATAAAAGGCGTC-ATGCGGACAAAAGTCGACGTTTTTC----TTT--T---TTTTCTGCGGATAAAAAGCGT-----------------TGCGGACAAAAAGCGTCA-------A----------------GCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
Reference ( family-305 ) : NNGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTCCGGGTCATAACTCCANANCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------CACCATGGAAACAAATAGNAANAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATNATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGNAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAAAC-TAACGNTATTGAGGTGGAACNGTNTTTAACACGACTATTTTTGCATCGGCGTCCTACCCACGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGATAATTTGAAGNTAATATAGTGTTTCTTCCNGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGGTNTTCGATATTCAACATGAAACT-A-CA---CTAA--------CA--AATTCTAGCCGTAACC---CT---A-------GCCTCCA--AT-TTGAAGA-GTTTCGC-CTTTAAATATCGAAAGATAGAAANACGAATATCAAACTAACTTCTAACTGCT---TG-A--TCTTC-ATTTTAC-ATTTACAGCCACCAATAANATGNCGTAAGATTNCTATNATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGGCGTC-TTTTTCTAA-TT-TT-CTGCG------------------GATAAAAAGCGTCATGCGGACAAAAGGCGTCATTTTTCT---A---TTTTT-C---GGATANAAA-GCGTCATGCGGACAAAAAG----CGTCATTTTTC--CA-------AATTTTCTGCG------------------GATAAAAGGCGTC-ATGCGGACAAAANTCGACGNTTTTC----TTT--T---TTTTCTGCGGATAAAAAGCGT-----------------TGCGGACAAAAAGCGTCA-------A----------------GCGGACAAAAAGCGCCTGC-ACA---GACGAGCACGNCCAAT
gi|1 : GAGGTGCATAATAGCAAAATTTTCCGTTTCC-------AACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-AAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTTT--GTTTAAATTGAGCAT-AAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACG---ATCTGAAGATAATATAATGTTTTTTTCGGTAGAG-TTAAGTTA---GTTTGATATT--CATATTT--ATATTCGATATTCACCATGAACCTAA-CA---CTAA--------CACTAATTCTAGTCCTAACC---AT---A-------GCCTCCA--AT-TTGAAGA-GTTTCTC-CTTTAAATATCAAAAGGTAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA--TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TAGA--------AC--ATGCA--TATACATGTATATAA--CTT--GCTTACGATT--GAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGA
gi|1 : ggATGCGGATAAAAG---ACGTCATTTTTCTAAACT-TT-CTGTG------------------GATAAAAGGCGTCATGCGGACAAAAGACGTCATTTTTCC---AAAGTTTCTGC---GGATATAAG-GCGTCATGCGGACAAAAGG----CGTCATTTTTC--CA-------AATTTTCTGCG------------------GATAAAAGTCGTC-ATGCGGACAAAAGTCGACGATTTTC----TTT--T---TTTTCTGCGGATAAATAGCGT-----------------TGCGGACAAAAAGCGTCA-------A----------------GCGGACAAAAAGTGCATGC-ACAATCGACGGACACGATCAATgtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataatgcggataaaagacgtcatttttctaaactttctgtggataaaaggcgtcatgcggacaaaagacgtcatttttccaaagtttctgcggatataaggcgtcatgcggacaaaaggcgtcatttttccaaattttctgcggataaaagtcgtcatgcggacaaaagtcgacgattttcttttttttctgcggataaatagcgttgcggacaaaaagcgtcaagcggacaaaaagtgcatgcacaatcgacggacacgatcaataacccacatgctaagattacagatagtattg
gi|10 : gggaggtgcataatagcaaaattttccgtttccaactacaaaaccattcaaagtaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagctttccgggtcataactccaaaaccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaatttccaaattatctgtaatacataaataaacgaaaccgaggaaaatgtaaaaaaaaaaaagctgtcggaaggacagagctctcgattattataaaatatttaaaaacaagtgtgcagctaacattcactatttgaaaaaaatatttcttcaaattactaaacaaacacattatggaaatacaattttgtttaaattgagcataaatagttcatgataaattaaaacaaggaccacaaagcagtcaatttacgtccttatcaagtcaatcagaaacttatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcttaaaggaaactagttactacggagagactaacgttattgtgggaaatagtgtttatatttttaattgacatatccaagttaaaataaaatactatacctttttcatatacttataacccttttattttgtaaataaatcccatggccatccagaaactgacgatctgaagataatataatgtttttttcggtagagttaagttagtttgatattcatatttatattcgatattcaccatgaacctaacactaacactaattctagtcctaaccatagcctccaatttgaagagtttctcctttaaatatcaaaaggtagaaaaacgaatatcaaactaacttctaactgcttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataagagcacgatctctttgaaagatgccctaatatgaacatcttccatcttccgtctgtccttcagaatgttttaaataaaatgcattcactattggtcgcttgaactggatagttgtgtcaccattgtctagatttctgtagatcaacatgcgcttagaacatgcatatacatgtatataacttgcttacgattgaaatacatctaaaactgtttaagttcattacatgaatatgaaaataataaatggagtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataAACTGACAATAATTTAAAACTAATA-A-------TTCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCTATTTCGTCTTTCGATATTC--------------------------------------CCTAGTCGTAACC---TTGTCA-------GTCTCCA--ATACTGAAGA-GTTGCGCACTTAAAATATAGAATAAC-GAAAAACGAAAATCAAACTTACTTCAAACTaacccacatgctaagattacagatagtattg
gi|11 : TGCGGATAAAAAGCGT-----------------TGCGGACAAAAAGCGTCA-------A----------------GCGGACAAAAAGCGCTTGC-ACA---------CACGCTCAATtc
gi|12 : GTAGAC-CGAAATTA---GTTTGATATTTTCGTGTTTTGACTTTTCATATTCTACATGAAACTAA-CA---CT--------------AATCCTAGCCTT--CT---CT-----------GCCACCA--ATATTGAAGA-GTT---C-CTT---------------------GCAAATATCAAATTAACTTCTAACTACTGTCTG-AAGTCTTC-CTATTAC-ATTTtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|13 : GAC-TGGAGTTA---G------AT---CG-GTTTCG----TC-ATGTTTGACATGAAACT-G-CA--------------------------GC--TAACC---CT---ATATTTTTGCATCTATGGTATTAAATG-GTTT--------AAATATCGAAAAAC-GAAATACGAATATCAAACTAACTTGTATCTGCT---TG-
gi|14 : acAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAATA--------------GTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATT
gi|15 : acAGAC-TGAAGTTA---GTTTGATATT--CGTCTTTCGATATTCGATATTCATCATGAAGTT-A-CG-----------------------------ATAATC---CT---A-------ACCT-----------AAGA-GTTATGC-C-----ATATCAAAAGA-AGAAAAACGAATATCAAACTAACTTCCTACTat
gi|16 : cAGAC-AGAAATTA---ATT-GATGGT--CATGTTTCACTTTTCGATATTCAACAAGAAA---A-CG---CC-A--------CA----------CCTTAACCTTTCC---A-------GTCTCGA--TTATTGACGA-TCTACAC-AATTTGATATTGAAAAACA
gi|17 : gtcAGAC-GGAAATAA---ATTTAGTATT--CATGTTTCGGCTTTCTATATTCAACATGAAACT-AGCA---TTTA--------CA--a
gi|19 : GCAAAC-TAACATTA---GTTTGATATT--CGTGTTTCGACAATCCATATTCAACGTGAAgttaccttct
gi|2 : gGCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATGGAAAAAAAAG-CT----GTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACG---ATTTGAAGATAATATAGTGTTTCTTTCGGTAGAG-TTAAGTTG---GTTTGATATT--AATCTTT-GATATTCGATATTCATCATGAACCTAA-CA---CTAATCCTAACCCT--AATTCTAGCCGTAACA---CT---A-------ACCTCCA--AT-TTGAATA-GTTTCTC-CTTTTAATATC--AAAAT---------AATATCAAACTAACTTCTAACTACT---TGTA--TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTATTTATTTTTTT---TCATATTCATGTAAT---GA--------ACTTAAGCAGTTTTAGATGTATTTAAATCGTAAGC--ACG--T--TATATACATGTA
gi|2 : TGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgG------------------GATAGAAGATGTC-ATGCGGACAAAAGTCGACGTTTTTG----TGA--T---TTTTCctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattATGCGGACAAAAGTCGACGT---TTTTGTGA-TT-TTTCNNNN------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N---NNNNN-N---NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNTCGACGTTTTTC--TA-------AATATTCGGCG------------------GATAAAAGGCGTC-ATGTGGACAAAAGGCGTCATTTTTCTTCTTTT--T---TTTTCTGCGGACAAAAGGCGTCATTTTTCCAAATTTTCTGCGGATAAAAGTTGTCA-------T----------------GCGGACAAAAGTCGACTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcTCGACGT---TTTTCTAA-ATATT-CGGCG------------------GATAAAAGGCGTCATGTGGACAAAAGGCGTCATTTTTCT---T---CTTTT-T------TTT-------TC-TGCGGACAAAAGG----CGTCATTTTTC--CA-------AATTTTCTGCG------------------GATAAAAGTTGTC-ATGCGGACAAAAGTCGACTGTTTTC----TTT--T---TTTTATTTGGATAAGGAGCGT-----------------TGCGGACAAAAAGCGTCA-------A----------------GCGGACAAAAAGCGCCTGC-Attttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|20 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------TACGGACAAAAAGGGTCA-------A----------------GCGGACAAAAAGCACCTGC-ACA---G
gi|3 : CG------------------GATAGAACGTGTCATGCGGACAAAAGTCGACGTTTTTGTG--A---TTTTT--------------------ATGCGGACAAAAGG----CGTTATTTTTA--TA-------AATTTTCTGCGGACAAAATGTGTAATGCGGACAAAAGGCGTC-ATGCGGACAAAAGTCGACGTTTTTT----TCTAAC---TTTTCTGCGGATAAAAGGCGTCA---------------TGCGTACAAAAGGCATCATTTTTCTATTTTTTCT--------GCGGACAAAAGGCGTCtc
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatATGCGGACAAAAG---GCGTTATTTTTATAAATT-TT-CTGCGGACAAAATGTGTAATGCGGACAAAAGGCGTCATGCGGACAAAAGTCGACGTTTTTTTCTAA---CTTTT-CTGCGGATAAAAG-GCGTCATGCGTACAAAAGG----CATCATTTTTC--TA-------TTTTTTCTGCG------------------GACAAAAGGCGTC-A-------------------TTTTT----TTT--CAAATTTTCTGCGGATAAAAGGCGTCA---------------TGCGGACAAAAATCGACG-------ATTTTCTTTTTTTTTCTGCGGATAAAAAGCGattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttATGCGGACAAAAGTCGACGTT-TTTTTCTAACTT-TT-CTGCG------------------GATAAAAGGCGTCATGCGTACAAAAGGCATCATTTTTCT---A---TTTTT------------------TC-TGCGGACAAAAGG----CGTCATTTTTTTTCA-------AATTTTCTGCG------------------GATAAAAGGCGTC-ATGCGGACAAAAATCGACGATTTTCT---TTT--T---TTTTCTGCGGATAAAAAGCGT-----------------TGCGGACAAAAAGttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTTTCTGCGGATAA-A--AA-GCGTTGCGGACAAAAAGTAC--ATGCA--CATACGTGC-T-TAA--CGT--GCTT-TTATTTGTAAATAtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|4 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcatgcggacaaaagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttcttttttGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA----------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTTT--GTTTAAATTGAGCAT-ACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAAATATC-------AATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGGaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA-----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACACTTA-TGGAAATATAATTTT--TTTTAAATTGAGCAA-ACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-
gi|6 : GCAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGACG-----CATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-GCCG----GAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|8 : ---TTTTG-C---AGACAAAAATATGCTATGCGGACAGAA------------TTTGC--TGGAAAAGGAATTAT------------------------ATATAAGCCCTTGATGAGGACAAAATTCGTCGTTATTC----CTA--A---CTAACTGCGGACAAAAAGCGT-----------------CGGGGACAAAAAGTGTCA-------A----------------GTGGACAAGAAACGCC-GCTACA---AACGAGCATGACTAAT
gi|9 : ttGTCGAC-TGAAGTTA---GTTTGCTGTT--CGTTATTCGCTTTTCGATATTTTACATAAAACT-ATCAAAGCTAA--------C----ATTCT--CCGT----------------------CTCCA--AT-TTTAGAATGTTTCACACTTT-CATATTGAAAGATA-AAACACGAATACCAAACTAACACATAACTGGC---TG-A--T------TATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAAAgtcagtactcagttatatctactattc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC
Alignments
lowQualScore : 1 3333333 88888888888888888888888888888888888888888888888888888888888 9999999999999999999999999999999999999999999999999999 1 44444444 11 1 4444444 1 2222 1 1 222 1 77777777777777777777777777 11111111111111 333333333333333333333333333 111 111 11 1 1 1 2222 11 1111 3333333333333 11 11 11 11 11 1 222 444444444444444 11111111 888888888888888888888888888888888888 11111 1111 7777777777777777777 222222222
lowQualScore : 1 1 5 0000000 1 44444444444444444444444444444444444444444444444444444444444 7 6 9999999999999999999999999999999999999999999999999999 1 0 3 88888888 0 0 0 1 1 1 0 11 8 0 1 5 1 6 2 3 99 5 6 1 99 33 1 8 1 3 3333333 3 0 4444 1 5 1 5 333 7 2 3 4 777 55 0 1 777 2 33 00 88888888888888888888888888 44 1 99999999999999 66 9 222222222222222222222222222 1 444 000 7 22 1 0 6 3 6 5 1 2 3333 1 1 88 7 4444 3 0 8888888888888 33 33 3 9 33 33 333 3 33 5 1 0 0 666 6 6 111111111111111 33333333 0 444444444444444444444444444444444444 44444 99 99 2 1 7777 3333333333333333333 8 777777777
lowQualScore : . . . ....... . ........................................................... . . .................................................... . . . ........ . . . . . . . .. . . . . . . . . .. . . . .. .. . . . . ....... . . .... . . . . ... . . . . ... .. . . ... . .. .. .......................... .. . .............. .. . ........................... . ... ... . .. . . . . . . . . .... . . .. . .... . . ............. .. .. . . .. .. ... . .. . . . . ... . . ............... ........ . .................................... ..... .. .. . . .... ................... . .........
lowQualScore : 0 0 5 5555555 0 55555555555555555555555555555555555555555555555555555555555 3 7 7777777777777777777777777777777777777777777777777777 0 0 2 88888888 2 2 2 0 4 0 8 00 0 8 4 2 0 7 5 2 22 2 7 7 22 88 4 0 2 3 3333333 3 7 0000 0 5 0 5 333 3 0 7 0 000 55 7 6 777 5 66 88 44444444444444444444444444 55 0 66666666666666 99 5 999999999999999999999999999 6 000 888 0 22 0 0 7 3 7 5 0 5 5555 0 0 33 0 8888 2 2 0000000000000 88 88 2 8 88 88 555 2 88 5 0 8 8 444 2 7 777777777777777 33333333 7 222222222222222222222222222222222222 33333 22 22 1 9 9999 8888888888888888888 0 000000000
consensus : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-A-CA---CTA-----------AATTCTAGCCNTA-ACC---CT---AGCCTCCA--ATATTGAAGAGTTTCGC-CTTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTTTCTAANTTTTCTGCGGATAAAAG-GCGTCA---------------TGCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCG--TTTTTC--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
Reference ( family-305 ) : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-A-CA---CTA----------CAATTCTAGCCNTA-ACC---CT---AGCCTCCA--ATATTGAAGAGTTTCGC-CTTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTTATTTTTCTAAATTTTCTGCGGATAAAAG-GCGTCA---------------TGCGGACAAAAGNCGTCGTTTTTCT---------A---TTTTT-CGGATANAAGGCGTC-ATGCGGACAAAAGG----CGTCA--TTTTTC--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGACGTTTTTC----TTTTTTTTCTGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
gi|1 : GAGGTGCATAATAGCAAAATTTTCCGTTTCC-------AACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-AAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTTT--GTTTAAATTGAGCAT-AAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---CTGAAGATAATATAATGTTTTTTTCGGTAGAG-TTAAGTTA---GTTTGATATT--CATATTT--ATATTCGATATTCACCATGAACCTAA-CA---CTAACAC------TAATTCTAGTCCTA-ACC---AT---AGCCTCCA--AT-TTGAAGAGTTTCTC-CTTTAAA--TATCAAAAGGTAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TAGA--------AC--ATGCA--TATACATGTATATAA--CTT--GCTTACGATT--GAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGA
gi|1 : ggATGCGGATAAAAG---ACGTCATTTTTCTAAACTTTCTGTGGATAAAAG-GCGTCA---------------TGCGGACAAAAGACGTCATTTTTCC---------AAAGTTTCTGCGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCA--TTTTTC--CAAATTTTCTGCGGATAAAAGTCGTCATGCGGACAAAAGTCGACGATTTTC----TTTTTTTTCTGCGGATAAATAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGTGCATGC-ACAATCGACGGACACGATCAATgtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataatgcggataaaagacgtcatttttctaaactttctgtggataaaaggcgtcatgcggacaaaagacgtcatttttccaaagtttctgcggatataaggcgtcatgcggacaaaaggcgtcatttttccaaattttctgcggataaaagtcgtcatgcggacaaaagtcgacgattttcttttttttctgcggataaatagcgttgcggacaaaaagcgtcaagcggacaaaaagtgcatgcacaatcgacggacacgatcaataacccacatgctaagattacagatagtattg
gi|10 : gggaggtgcataatagcaaaattttccgtttccaactacaaaaccattcaaagtaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagctttccgggtcataactccaaaaccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaatttccaaattatctgtaatacataaataaacgaaaccgaggaaaatgtaaaaaaaaaaaagctgtcggaaggacagagctctcgattattataaaatatttaaaaacaagtgtgcagctaacattcactatttgaaaaaaatatttcttcaaattactaaacaaacacattatggaaatacaattttgtttaaattgagcataaatagttcatgataaattaaaacaaggaccacaaagcagtcaatttacgtccttatcaagtcaatcagaaacttatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcttaaaggaaactagttactacggagagactaacgttattgtgggaaatagtgtttatatttttaattgacatatccaagttaaaataaaatactatacctttttcatatacttataacccttttattttgtaaataaatcccatggccatccagaaactgacgatctgaagataatataatgtttttttcggtagagttaagttagtttgatattcatatttatattcgatattcaccatgaacctaacactaacactaattctagtcctaaccatagcctccaatttgaagagtttctcctttaaatatcaaaaggtagaaaaacgaatatcaaactaacttctaactgcttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataagagcacgatctctttgaaagatgccctaatatgaacatcttccatcttccgtctgtccttcagaatgttttaaataaaatgcattcactattggtcgcttgaactggatagttgtgtcaccattgtctagatttctgtagatcaacatgcgcttagaacatgcatatacatgtatataacttgcttacgattgaaatacatctaaaactgtttaagttcattacatgaatatgaaaataataaatggagtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataAACTGACAATAATTTAAAACTAATA-A-------TTCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCTATTTCGTCTTTCGATATTC------------------------------------CCTAGTCGTA-ACC---TTGTCAGTCTCCA--ATACTGAAGAGTTGCGC-ACTT-AAAATATAGAATAAC-GAAAAACGAAAATCAAACTTACTTCAAACTaacccacatgctaagattacagatagtattg
gi|11 : TGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCTTGC-ACA---------CACGCTCAATtc
gi|12 : GTAGAC-CGAAATTA---GTTTGATATTTTCGTGTTTTGACTTTTCATATTCTACATGAAACTAA-CA---CT------------AATCCTAGCCTT---CT---CT----GCCACCA--ATATTGAAGAGTT---C-CTT-----------------------GCAAATATCAAATTAACTTCTAACTACTGTCTGAAGTCTTC-CTATTAC-ATTTtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|13 : GAC-TGGAGTTA---G------AT---CG-GTTTCG----TC-ATGTTTGACATGAAACT-G-CA---G-----------------CTAACCCTATATT---TT---TGCATCTATGGTATTAAATGGTTTA--------AA--TATCGAAAAAC-GAAATACGAATATCAAACTAACTTGTATCTGCT---TG
gi|14 : acAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAATA--------------GTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATT
gi|15 : acAGAC-TGAAGTTA---GTTTGATATT--CGTCTTTCGATATTCGATATTCATCATGAAGTT-A-CG---------------------------ATA-ATC---CT---AACCT-----------AAGAGTTATGC-C-----A--TATCAAAAGA-AGAAAAACGAATATCAAACTAACTTCCTACTat
gi|16 : cAGAC-AGAAATTA---ATT-GATGGT--CATGTTTCACTTTTCGATATTCAACAAGAAA---A-CG---CCA----------CA-------CCTTA-ACCTTTCC---AGTCTCGA--TTATTGACGATCTACACAATTT-GA--TATTGAAAAACA
gi|17 : gtcAGAC-GGAAATAA---ATTTAGTATT--CATGTTTCGGCTTTCTATATTCAACATGAAACT-AGCAT--TTA----------CAGTTa
gi|19 : GGCAAAC-TAACATTA---GTTTGATATT--CGTGTTTCGACAATCCATATTCAACGTGAAaccttct
gi|2 : GCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATGGAAAAAAAAG-CT----GTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAG-TTAAGTTG---GTTTGATATT--AATCTTT-GATATTCGATATTCATCATGAACCT-AACA---CTAATCCTAACCCTAATTCTAGCCGTA-ACA---CT---AACCTCCA--AT-TTGAATAGTTTCTC-CTTTTAA--TATC----------AAAAT-AATATCAAACTAACTTCTAACTACT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTATTTATTTTTTT---TCATATTCATGTAAT---GA--------ACTTAAGCAGTTTTAGATGTATTTAAATCGTAAGC--ACG--T--TATATACATGTA
gi|2 : TGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgGGATAGAAGATGTCATGCGGACAAAAGTCGACGTTTTTG----TGATTTTTCctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattATGCGGACAAAAGTCGACGTT---TTTGTGATTTTTCNNNNNNNNNNNN-NNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNNN---------N---NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNTCGACG--TTTTTC--TAAATATTCGGCGGATAAAAGGCGTCATGTGGACAAAAGGCGTCATTTTTCTTCTTTTTTTTTCTGCGGACAAAAGGCGTCATTTTTCCAAATTTTC--TGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcTCGACGTT---TTTCTAAATATTCGGCGGATAAAAG-GCGTCA---------------TGTGGACAAAAGGCGTCATTTTTCT---------T---CTTTT-T---TTT------TC--TGCGGACAAAAGG----CGTCA--TTTTTC--CAAATTTTCTGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGTTTTC----TTTTTTTTATTTGGATAAGGAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-Attttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|20 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------TACGGACAAAAAGGGTCAAGCGGACAAAAAGCACCTGC-ACA---G
gi|3 : ATGCGGACAAAAGTCGACG---TTTTTGTGATTTTTATGCGGACAAAAG-GCGTTATTTTTATAAATTTTCTGCGGACAAAATGTGTAA-----------------------TG-CGGACAAAAGGCGTC-ATGCGGACAAAAGT----CGACGTTTTTTTC--TAACTTTTCTGCGGATAAAAGGCGTCATGCGTACAAAAGGCATCATTTTTC----TATTTTTTCTGCGGACAAAAGGCGTCATTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGtc
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcATGCGGACAAAAGTCGACGTT-TTTTTCTAACTTTTCTGCGGATAAAAG-GCGTCA---------------TGCGTACAAAAGGCATCATTTTTCT---------A---TTTTT--------------TC--TGCGGACAAAAGG----CGTCA--TTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGACGATTTTCT---TTTTTTTTCTGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTTTCTGCGGATAA-A--AA-GCGTTGCGGACAAAAAGTAC--ATGCA--CATACGTGC-T-TAA--CGT--GCTT-TTATTTGTAAATAtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|4 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcatgcggacaaaagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttcttttttGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA----------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTTT--GTTTAAATTGAGCAT-ACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAAATATC-------AATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGGaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA-----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACACTTA-TGGAAATATAATTTT--TTTTAAATTGAGCAA-ACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-
gi|6 : GCAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGACG-----CATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-G----CCGGAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|8 : TTTTTTGCAGACAAAAATATGCTA---------------TGCGGACAGAA--------TTTGCTGGAAAAGGAA---TTAT-----ATATAAGCCCTTGATGAGGACAAAATT----CGTCG--TTATTC--CTAACTAACTGCGGACAAAAAGCGTC--GGGGACAAAA
gi|8 : ATGAGGACAAAATTCGTCGTTATTC----CTAACTAACTGCGGACAAAAAGCGT-------------------CGGGGACAAAAAGTGTCAAGTGGACAAGAAACGCC-GCTACA---AACGAGCATGACTAATagtgtcaagtggacaagaaacgccgctacaaacgagcatgactaatgtcagtactcagttatatctactattc
gi|9 : ttttttgcagacaaaaatatgctatgcggacagaatttgctggaaaaggaattatatataagcccttgGTCGAC-TGAAGTTA---GTTTGCTGTT--CGTTATTCGCTTTTCGATATTTTACATAAAACT-ATCAAAGCTA----------ACATTCT--CCGT----------------CTCCA--ATTTTAGAATGTTTCACACTTT-CA--TATTGAAAGATA-AAACACGAATACCAAACTAACACATAACTGGC---TG-A-T------TATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAAAgtcagtactcagttatatctactattc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC
Alignments
lowQualScore : 1 3333333 88888888888888888888888888888888888888888888888888888888888 7777777777777777777777777777777777777777777777777 1 44444444 11 1 4444444 1 2222 1 1 222 1 777777777777777777777777777 22222222222 3333333333333333333333333333 111 111 11 1 1 1 2222 11 1111 3333333333333 11 11 11 11 11 1 1111 444444444444444 888888888888888888888888888888888888 11111 11111 1111 7777777777777777777 222222222
lowQualScore : 1 1 5 0000000 1 44444444444444444444444444444444444444444444444444444444444 7 6 9999999999999999999999999999999999999999999999999 1 0 3 88888888 0 0 0 1 1 1 0 11 8 0 1 5 1 6 2 3 99 5 6 1 99 33 1 8 1 3 3333333 3 0 4444 1 5 1 5 333 7 2 3 4 777 55 0 1 777 2 33 00 555555555555555555555555555 00 1 55555555555 66 9 2222222222222222222222222222 1 444 000 7 22 1 0 6 3 6 5 1 2 3333 1 1 88 7 4444 3 0 8888888888888 33 33 3 9 33 33 333 3 33 5 1 0 8 6666 1 6 111111111111111 4 0 0 0 555555555555555555555555555555555555 44444 11111 1 1 7777 3333333333333333333 8 777777777
lowQualScore : . . . ....... . ........................................................... . . ................................................. . . . ........ . . . . . . . .. . . . . . . . . .. . . . .. .. . . . . ....... . . .... . . . . ... . . . . ... .. . . ... . .. .. ........................... .. . ........... .. . ............................ . ... ... . .. . . . . . . . . .... . . .. . .... . . ............. .. .. . . .. .. ... . .. . . . . .... . . ............... . . . . .................................... ..... ..... . . .... ................... . .........
lowQualScore : 0 0 5 5555555 0 55555555555555555555555555555555555555555555555555555555555 3 7 0000000000000000000000000000000000000000000000000 0 0 2 88888888 2 2 2 0 4 0 8 00 0 8 4 2 0 7 5 2 22 2 7 7 22 88 4 0 2 3 3333333 3 7 0000 0 5 0 5 333 3 0 7 0 000 55 7 6 777 5 66 88 111111111111111111111111111 44 0 11111111111 99 5 9999999999999999999999999999 6 000 888 0 22 0 0 7 3 7 5 0 5 5555 0 0 33 0 8888 2 2 0000000000000 88 88 2 8 88 88 555 2 88 5 0 8 0 8888 0 7 777777777777777 3 2 8 7 888888888888888888888888888888888888 33333 00000 0 9 9999 8888888888888888888 0 000000000
consensus : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-A-CG---CTA-----------A-ATCCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTNTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
Reference ( family-305 ) : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-A-CA---CTA-----------A-ATTCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTTTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
gi|1 : GAGGTGCATAATAGCAAAATTTTCCGTTTC-------CAACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGA-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-AAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTTT--GTTTAAATTGAGCAT-AAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---CTGAAGATAATATAATGTTTTTTTCGGTAGAG-TTAAGTTA---GTTTGATATT--CATATTT--ATATTCGATATTCACCATGAACCTAA-CA---CTAACACT------A-ATTCTAGTCCTA-ACCAT---AGCCTCCA--AT-TTGAAGAGTTTCTC-C-TTTAAA--TATCAAAAGGTAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TAGA--------AC--ATGCA--TATACATGTATATAA--CTT--GCTTACGATT--GAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGA
gi|1 : ggATGCGGATAAAAG---ACGTCATTTTTCTAAACTTTCTGTGGATAAAAG-GCGTCAT---------------GCGGACAAAAGACGTCATTTTTCC---------AAAGTTTCTGCGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTCGTCATGCGGACAAAAGTCGACGATTTTC----TTTTTTTTCTGCGGATAAATAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGTGCATGC-ACAATCGACGGACACGATCAATgtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataatgcggataaaagacgtcatttttctaaactttctgtggataaaaggcgtcatgcggacaaaagacgtcatttttccaaagtttctgcggatataaggcgtcatgcggacaaaaggcgtcatttttccaaattttctgcggataaaagtcgtcatgcggacaaaagtcgacgattttcttttttttctgcggataaatagcgttgcggacaaaaagcgtcaagcggacaaaaagtgcatgcacaatcgacggacacgatcaataacccacatgctaagattacagatagtattg
gi|10 : gggaggtgcataatagcaaaattttccgtttccaactacaaaaccattcaaagtaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagctttccgggtcataactccaaaaccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaatttccaaattatctgtaatacataaataaacgaaaccgaggaaaatgtaaaaaaaaaaaagctgtcggaaggacagagctctcgattattataaaatatttaaaaacaagtgtgcagctaacattcactatttgaaaaaaatatttcttcaaattactaaacaaacacattatggaaatacaattttgtttaaattgagcataaatagttcatgataaattaaaacaaggaccacaaagcagtcaatttacgtccttatcaagtcaatcagaaacttatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcttaaaggaaactagttactacggagagactaacgttattgtgggaaatagtgtttatatttttaattgacatatccaagttaaaataaaatactatacctttttcatatacttataacccttttattttgtaaataaatcccatggccatccagaaactgacgatctgaagataatataatgtttttttcggtagagttaagttagtttgatattcatatttatattcgatattcaccatgaacctaacactaacactaattctagtcctaaccatagcctccaatttgaagagtttctcctttaaatatcaaaaggtagaaaaacgaatatcaaactaacttctaactgcttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataagagcacgatctctttgaaagatgccctaatatgaacatcttccatcttccgtctgtccttcagaatgttttaaataaaatgcattcactattggtcgcttgaactggatagttgtgtcaccattgtctagatttctgtagatcaacatgcgcttagaacatgcatatacatgtatataacttgcttacgattgaaatacatctaaaactgtttaagttcattacatgaatatgaaaataataaatggagtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataAACTGACAATAATTTAAAACTAATA-A-------TTCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCTATTTCGTCTTTCGATATTC-------------------------------------CCTAGTCGTA-ACCTTGTCAGTCTCCA--ATACTGAAGAGTTGCGC-A-CTT-AAAATATAGAATAAC-GAAAAACGAAAATCAAACTTACTTCAAACTaacccacatgctaagattacagatagtattg
gi|11 : TGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCTTGC-ACA---------CACGCTCAATtc
gi|12 : GTAGAC-CGAAATTA---GTTTGATATTTTCGTGTTTTGACTTTTCATATTCTACATGAAACTAA-CA---CT------------A-ATCCTAGCCTT---CTCT----GCCACCA--ATATTGAAGAGTT---C-C-TT-----------------------GCAAATATCAAATTAACTTCTAACTACTGTCTGAAGTCTTC-CTATTAC-ATTTtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|13 : GAC-TGGAGTTA---G------AT---CG-GTTTCG----TC-ATGTTTGACATGAAACT-G-CA---G------------------CTAACCCTATATTTT---TGCATCTATGGTATTAAATGGTTTA---------AA--TATCGAAAAAC-GAAATACGAATATCAAACTAACTTGTATCTGCT---TG
gi|14 : acAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAATA--------------GTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATT
gi|15 : acAGAC-TGAAGTTA---GTTTGATATT--CGTCTTTCGATATTCGATATTCATCATGAAGTT-A-CG----------------------------ATA-ATCCT---AACCT-----------AAGAGTTATGC-C------A--TATCAAAAGA-AGAAAAACGAATATCAAACTAACTTCCTACTat
gi|16 : cAGAC-AGAAATTA---ATT-GATGGT--CATGTTTCACTTTTCGATATTCAACAAGAAA---A-CG---CCA-----------C-ACCTTAACCTT----TCC---AGTCTCGA--TTATTGACGATCTACACAA-TTT-GA--TATTGAAAAACA
gi|17 : gtcAGAC-GGAAATAA---ATTTAGTATT--CATGTTTCGGCTTTCTATATTCAACATGAAACT-A-a
gi|19 : GGCAAAC-TAACATTA---GTTTGATATT--CGTGTTTCGACAATCCATATTCAACGTGAAgcatttacagttaccttct
gi|2 : GCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATGGAAAAAAAAG-CT----GTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAG-TTAAGTTG---GTTTGATATT--AATCTTT-GATATTCGATATTCATCATGAACCTAA-CA---CTAATCCTAACCCTA-ATTCTAGCCGTA-ACACT---AACCTCCA--AT-TTGAATAGTTTCTC-CTTTT-AA--TATC----------AAAAT-AATATCAAACTAACTTCTAACTACT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTATTTATTTTTTT---TCATATTCATGTAAT---GA--------ACTTAAGCAGTTTTAGATGTATTTAAATCGTAAGC--ACG--T--TATATACATGTA
gi|2 : TGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgGGATAGAAGATGTCATGCGGACAAAAGTCGACGTTTTTG----TGATTTTTCctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattATGCGGACAAAAGTCGACGTT-TTTGT--GATTTTTCNNNNNNNNNNNN-NNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNN---------N---NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNTCGACGTTTTT--C--TAAATATTCGGCGGATAAAAGGCGTCATGTGGACAAAAGGCGTCATTTTTCTTCTTTTTTTTTCTGCGGACAAAAGGCGTCATTTTTCCAAATTTTC--TGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcTCGACGTT-TTT--CTAAATATTCGGCGGATAAAAG-GCGTCAT---------------GTGGACAAAAGGCGTCATTTTTCT---------T---CTTTT-T---TTT------TC--TGCGGACAAAAGG----CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGTTTTC----TTTTTTTTATTTGGATAAGGAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-Attttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|20 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------TACGGACAAAAAGGGTCAAGCGGACAAAAAGCACCTGC-ACA---G
gi|3 : ATGCGGACAAAAGTCGACGTT-TTTGT--GATTTTTATGCGGACAAAAG-GCGTTATTTTTATAAATTTTCTGCGGACAAAATGTGTAATG------------------------CGGACAAAAGGCGTC-ATGCGGACAAAAGT----CGACGTTTTTTTC--TAACTTTTCTGCGGATAAAAGGCGTCATGCGTACAAAAGGCATCATTTTTC----TATTTTTTCTGCGGACAAAAGGCGTCATTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGtc
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcATGCGGACAAAAGTCGACGTT-TTTTTCTAACTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGTACAAAAGGCATCATTTTTCT---------A---TTTTT--------------TC--TGCGGACAAAAGG----CGTCATTTTT--TTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGACGATTTTCT---TTTTTTTTCTGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTTTCTGCGGATAA-A--AA-GCGTTGCGGACAAAAAGTAC--ATGCA--CATACGTGC-T-TAA--CGT--GCTT-TTATTTGTAAATAtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|4 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcatgcggacaaaagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttcttttttGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA----------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTTT--GTTTAAATTGAGCAT-ACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAAATATC-------AATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGGaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA-----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACACTTA-TGGAAATATAATTTT--TTTTAAATTGAGCAA-ACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-
gi|6 : GCAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGACG-----CATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-G----CCGGAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|8 : TTTTTTGCAGACAAAAATATGCTAT---------------GCGGACAGAA--------TTTGCTGGAAAAGGAA---TTAT-----ATATAAGCCCTTGATGAGGACAAAATT----CGTCGTTATT--C--CTAACTAACTGCGGACAAAAAGCGTC--GGGGACAAAA
gi|8 : ATGAGGACAAAATTCGTCGTTATTC----CTAACTAACTGCGGACAAAAAGCGT-------------------CGGGGACAAAAAGTGTCAAGTGGACAAGAAACGCC-GCTACA---AACGAGCATGACTAATagtgtcaagtggacaagaaacgccgctacaaacgagcatgactaatgtcagtactcagttatatctactattc
gi|9 : ttttttgcagacaaaaatatgctatgcggacagaatttgctggaaaaggaattatatataagcccttgGTCGAC-TGAAGTTA---GTTTGCTGTT--CGTTATTCGCTTTTCGATATTTTACATAAAACT-ATCAAAGCTA-----------ACATTCT--CCGT-------------CTCCA--ATTTTAGAATGTTTCACAC-TTT-CA--TATTGAAAGATA-AAACACGAATACCAAACTAACACATAACTGGC---TG-A-T------TATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAAAgtcagtactcagttatatctactattc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC
Alignments
lowQualScore : 1 3333333 88888888888888888888888888888888888888888888888888888888888 7777777777777777777777777777777777777777777777777 1 44444444 11 1 4444444 1 2222 1 1 222 1 7777777777777777777777777777777777777777777777 3333333333333333333333333333 111 111 11 1 1 1 2222 11 1111 3333333333333 11 11 11 11 11 1 1111 444444444444444 888888888888888888888888888888888888 11111 11111 1111 7777777777777777777 222222222
lowQualScore : 1 1 5 0000000 1 44444444444444444444444444444444444444444444444444444444444 7 6 9999999999999999999999999999999999999999999999999 1 0 3 88888888 0 0 0 1 1 1 0 11 8 0 1 5 1 6 2 3 99 5 6 1 99 33 1 8 1 3 3333333 3 0 4444 1 5 1 5 333 7 2 3 4 777 55 0 1 777 2 33 00 5555555555555555555555555555555555555555555555 66 9 2222222222222222222222222222 1 444 000 7 22 1 0 6 3 6 5 1 2 3333 1 1 88 7 4444 3 0 8888888888888 33 33 3 9 33 33 333 3 33 5 1 0 8 5555 1 6 111111111111111 4 0 0 0 555555555555555555555555555555555555 44444 11111 1 1 7777 3333333333333333333 8 777777777
lowQualScore : . . . ....... . ........................................................... . . ................................................. . . . ........ . . . . . . . .. . . . . . . . . .. . . . .. .. . . . . ....... . . .... . . . . ... . . . . ... .. . . ... . .. .. .............................................. .. . ............................ . ... ... . .. . . . . . . . . .... . . .. . .... . . ............. .. .. . . .. .. ... . .. . . . . .... . . ............... . . . . .................................... ..... ..... . . .... ................... . .........
lowQualScore : 0 0 5 5555555 0 55555555555555555555555555555555555555555555555555555555555 3 7 0000000000000000000000000000000000000000000000000 0 0 2 88888888 2 2 2 0 4 0 8 00 0 8 4 2 0 7 5 2 22 2 7 7 22 88 4 0 2 3 3333333 3 7 0000 0 5 0 5 333 3 0 7 0 000 55 7 6 777 5 66 88 5555555555555555555555555555555555555555555555 99 5 9999999999999999999999999999 6 000 888 0 22 0 0 7 3 7 5 0 5 5555 0 0 33 0 8888 2 2 0000000000000 88 88 2 8 88 88 555 2 88 5 0 8 0 2222 0 7 777777777777777 3 2 8 7 888888888888888888888888888888888888 33333 00000 0 9 9999 8888888888888888888 0 000000000
consensus : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-AC----GCTA-----------A-ATCCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTNTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
Reference ( family-305 ) : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-AC----GCTA-----------A-ATCCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTNTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
gi|1 : GAGGTGCATAATAGCAAAATTTTCCGTTTC-------CAACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGA-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-AAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTTT--GTTTAAATTGAGCAT-AAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---CTGAAGATAATATAATGTTTTTTTCGGTAGAG-TTAAGTTA---GTTTGATATT--CATATTT--ATATTCGATATTCACCATGAACCTAAC----ACTAACACT------A-ATTCTAGTCCTA-ACCAT---AGCCTCCA--AT-TTGAAGAGTTTCTC-C-TTTAAA--TATCAAAAGGTAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TAGA--------AC--ATGCA--TATACATGTATATAA--CTT--GCTTACGATT--GAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGA
gi|1 : ggATGCGGATAAAAG---ACGTCATTTTTCTAAACTTTCTGTGGATAAAAG-GCGTCAT---------------GCGGACAAAAGACGTCATTTTTCC---------AAAGTTTCTGCGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTCGTCATGCGGACAAAAGTCGACGATTTTC----TTTTTTTTCTGCGGATAAATAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGTGCATGC-ACAATCGACGGACACGATCAATgtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataatgcggataaaagacgtcatttttctaaactttctgtggataaaaggcgtcatgcggacaaaagacgtcatttttccaaagtttctgcggatataaggcgtcatgcggacaaaaggcgtcatttttccaaattttctgcggataaaagtcgtcatgcggacaaaagtcgacgattttcttttttttctgcggataaatagcgttgcggacaaaaagcgtcaagcggacaaaaagtgcatgcacaatcgacggacacgatcaataacccacatgctaagattacagatagtattg
gi|10 : gggaggtgcataatagcaaaattttccgtttccaactacaaaaccattcaaagtaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagctttccgggtcataactccaaaaccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaatttccaaattatctgtaatacataaataaacgaaaccgaggaaaatgtaaaaaaaaaaaagctgtcggaaggacagagctctcgattattataaaatatttaaaaacaagtgtgcagctaacattcactatttgaaaaaaatatttcttcaaattactaaacaaacacattatggaaatacaattttgtttaaattgagcataaatagttcatgataaattaaaacaaggaccacaaagcagtcaatttacgtccttatcaagtcaatcagaaacttatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcttaaaggaaactagttactacggagagactaacgttattgtgggaaatagtgtttatatttttaattgacatatccaagttaaaataaaatactatacctttttcatatacttataacccttttattttgtaaataaatcccatggccatccagaaactgacgatctgaagataatataatgtttttttcggtagagttaagttagtttgatattcatatttatattcgatattcaccatgaacctaacactaacactaattctagtcctaaccatagcctccaatttgaagagtttctcctttaaatatcaaaaggtagaaaaacgaatatcaaactaacttctaactgcttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataagagcacgatctctttgaaagatgccctaatatgaacatcttccatcttccgtctgtccttcagaatgttttaaataaaatgcattcactattggtcgcttgaactggatagttgtgtcaccattgtctagatttctgtagatcaacatgcgcttagaacatgcatatacatgtatataacttgcttacgattgaaatacatctaaaactgtttaagttcattacatgaatatgaaaataataaatggagtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataAACTGACAATAATTTAAAACTAATA-A-------TTCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCTATTTCGTCTTTCGATATTC-------------------------------------CCTAGTCGTA-ACCTTGTCAGTCTCCA--ATACTGAAGAGTTGCGC-A-CTT-AAAATATAGAATAAC-GAAAAACGAAAATCAAACTTACTTCAAACTaacccacatgctaagattacagatagtattg
gi|11 : TGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCTTGC-ACA---------CACGCTCAATtc
gi|12 : GTAGAC-CGAAATTA---GTTTGATATTTTCGTGTTTTGACTTTTCATATTCTACATGAAACTAAC----ACT------------A-ATCCTAGCCTT---CTCT----GCCACCA--ATATTGAAGAGTT---C-C-TT-----------------------GCAAATATCAAATTAACTTCTAACTACTGTCTGAAGTCTTC-CTATTAC-ATTTtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|13 : GAC-TGGAGTTA---G------AT---CG-GTTTCG----TC-ATGTTTGACATGAAACT-GCA---GCTA-----------A--------CCCTATATTTT---TGCATCTATGGTATTAAATGGTTTA---------AA--TATCGAAAAAC-GAAATACGAATATCAAACTAACTTGTATCTGCT---TG
gi|14 : acAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAATA--------------GTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATT
gi|15 : acAGAC-TGAAGTTA---GTTTGATATT--CGTCTTTCGATATTCGATATTCATCATGAAGTT-AC----G-------------------------ATA-ATCCT---AACCT-----------AAGAGTTATGC-C------A--TATCAAAAGA-AGAAAAACGAATATCAAACTAACTTCCTACTat
gi|16 : cAGAC-AGAAATTA---ATT-GATGGT--CATGTTTCACTTTTCGATATTCAACAAGAAA---AC----GCCA-----------C-ACCTTAACCTT----TCC---AGTCTCGA--TTATTGACGATCTACACAA-TTT-GA--TATTGAAAAACA
gi|17 : gtcAGAC-GGAAATAA---ATTTAGTATT--CATGTTTCGGCTTTCTATATTCAACATGAAACT-Aa
gi|19 : GGCAAAC-TAACATTA---GTTTGATATT--CGTGTTTCGACAATCCATATTCAACGTGAAgcatttacagttaccttct
gi|2 : GCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATGGAAAAAAAAG-CT----GTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAG-TTAAGTTG---GTTTGATATT--AATCTTT-GATATTCGATATTCATCATGAACCTAAC----ACTAATCCTAACCCTA-ATTCTAGCCGTA-ACACT---AACCTCCA--AT-TTGAATAGTTTCTC-CTTTT-AA--TATC----------AAAAT-AATATCAAACTAACTTCTAACTACT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTATTTATTTTTTT---TCATATTCATGTAAT---GA--------ACTTAAGCAGTTTTAGATGTATTTAAATCGTAAGC--ACG--T--TATATACATGTA
gi|2 : TGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgGGATAGAAGATGTCATGCGGACAAAAGTCGACGTTTTTG----TGATTTTTCctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattATGCGGACAAAAGTCGACGTT-TTTGT--GATTTTTCNNNNNNNNNNNN-NNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNN---------N---NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNTCGACGTTTTT--C--TAAATATTCGGCGGATAAAAGGCGTCATGTGGACAAAAGGCGTCATTTTTCTTCTTTTTTTTTCTGCGGACAAAAGGCGTCATTTTTCCAAATTTTC--TGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcTCGACGTT-TTT--CTAAATATTCGGCGGATAAAAG-GCGTCAT---------------GTGGACAAAAGGCGTCATTTTTCT---------T---CTTTT-T---TTT------TC--TGCGGACAAAAGG----CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGTTTTC----TTTTTTTTATTTGGATAAGGAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-Attttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|20 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------TACGGACAAAAAGGGTCAAGCGGACAAAAAGCACCTGC-ACA---G
gi|3 : ATGCGGACAAAAGTCGACGTT-TTTGT--GATTTTTATGCGGACAAAAG-GCGTTATTTTTATAAATTTTCTGCGGACAAAATGTGTAATG------------------------CGGACAAAAGGCGTC-ATGCGGACAAAAGT----CGACGTTTTTTTC--TAACTTTTCTGCGGATAAAAGGCGTCATGCGTACAAAAGGCATCATTTTTC----TATTTTTTCTGCGGACAAAAGGCGTCATTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGtc
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcATGCGGACAAAAGTCGACGTT-TTTTTCTAACTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGTACAAAAGGCATCATTTTTCT---------A---TTTTT--------------TC--TGCGGACAAAAGG----CGTCATTTTT--TTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGACGATTTTCT---TTTTTTTTCTGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTTTCTGCGGATAA-A--AA-GCGTTGCGGACAAAAAGTAC--ATGCA--CATACGTGC-T-TAA--CGT--GCTT-TTATTTGTAAATAtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|4 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcatgcggacaaaagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttcttttttGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA----------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTTT--GTTTAAATTGAGCAT-ACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAAATATC-------AATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGGaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA-----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACACTTA-TGGAAATATAATTTT--TTTTAAATTGAGCAA-ACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-
gi|6 : GCAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGACG-----CATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-G----CCGGAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|8 : TTTTTTGCAGACAAAAATATGCTAT---------------GCGGACAGAA--------TTTGCTGGAAAAGGAA---TTAT-----ATATAAGCCCTTGATGAGGACAAAATT----CGTCGTTATT--C--CTAACTAACTGCGGACAAAAAGCGTC--GGGGACAAAA
gi|8 : ATGAGGACAAAATTCGTCGTTATTC----CTAACTAACTGCGGACAAAAAGCGT-------------------CGGGGACAAAAAGTGTCAAGTGGACAAGAAACGCC-GCTACA---AACGAGCATGACTAATagtgtcaagtggacaagaaacgccgctacaaacgagcatgactaatgtcagtactcagttatatctactattc
gi|9 : ttttttgcagacaaaaatatgctatgcggacagaatttgctggaaaaggaattatatataagcccttgGTCGAC-TGAAGTTA---GTTTGCTGTT--CGTTATTCGCTTTTCGATATTTTACATAAAACT-ATCAAAGCTA-----------ACATTCT--CCGT-------------CTCCA--ATTTTAGAATGTTTCACAC-TTT-CA--TATTGAAAGATA-AAACACGAATACCAAACTAACACATAACTGGC---TG-A-T------TATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAAAgtcagtactcagttatatctactattc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC
Alignments
lowQualScore : 1 3333333 88888888888888888888888888888888888888888888888888888888888 7777777777777777777777777777777777777777777777777 1 44444444 11 1 4444444 1 2222 1 1 222 1 7777777777777777777777777777777777777777777777 3333333333333333333333333333 111 111 11 1 1 1 2222 11 1111 3333333333333 11 11 11 11 11 1 1111 444444444444444 888888888888888888888888888888888888 11111 11111 1111 7777777777777777777 222222222
lowQualScore : 1 1 5 0000000 1 44444444444444444444444444444444444444444444444444444444444 7 6 9999999999999999999999999999999999999999999999999 1 0 3 88888888 0 0 0 1 1 1 0 11 8 0 1 5 1 6 2 3 99 5 6 1 99 33 1 8 1 3 3333333 3 0 4444 1 5 1 5 333 7 2 3 4 777 55 0 1 777 2 33 00 5555555555555555555555555555555555555555555555 66 9 2222222222222222222222222222 1 444 000 7 22 1 0 6 3 6 5 1 2 3333 1 1 88 7 4444 3 0 8888888888888 33 33 3 9 33 33 333 3 33 5 1 0 8 5555 1 6 111111111111111 4 0 0 0 555555555555555555555555555555555555 44444 11111 1 1 7777 3333333333333333333 8 777777777
lowQualScore : . . . ....... . ........................................................... . . ................................................. . . . ........ . . . . . . . .. . . . . . . . . .. . . . .. .. . . . . ....... . . .... . . . . ... . . . . ... .. . . ... . .. .. .............................................. .. . ............................ . ... ... . .. . . . . . . . . .... . . .. . .... . . ............. .. .. . . .. .. ... . .. . . . . .... . . ............... . . . . .................................... ..... ..... . . .... ................... . .........
lowQualScore : 0 0 5 5555555 0 55555555555555555555555555555555555555555555555555555555555 3 7 0000000000000000000000000000000000000000000000000 0 0 2 88888888 2 2 2 0 4 0 8 00 0 8 4 2 0 7 5 2 22 2 7 7 22 88 4 0 2 3 3333333 3 7 0000 0 5 0 5 333 3 0 7 0 000 55 7 6 777 5 66 88 5555555555555555555555555555555555555555555555 99 5 9999999999999999999999999999 6 000 888 0 22 0 0 7 3 7 5 0 5 5555 0 0 33 0 8888 2 2 0000000000000 88 88 2 8 88 88 555 2 88 5 0 8 0 2222 0 7 777777777777777 3 2 8 7 888888888888888888888888888888888888 33333 00000 0 9 9999 8888888888888888888 0 000000000
consensus : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-AC----GCTA-----------A-ATCCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTNTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
Reference ( family-305 ) : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-AC----GCTA-----------A-ATCCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTNTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
gi|1 : GAGGTGCATAATAGCAAAATTTTCCGTTTC-------CAACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGA-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-AAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTTT--GTTTAAATTGAGCAT-AAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---CTGAAGATAATATAATGTTTTTTTCGGTAGAG-TTAAGTTA---GTTTGATATT--CATATTT--ATATTCGATATTCACCATGAACCTAAC----ACTAACACT------A-ATTCTAGTCCTA-ACCAT---AGCCTCCA--AT-TTGAAGAGTTTCTC-C-TTTAAA--TATCAAAAGGTAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TAGA--------AC--ATGCA--TATACATGTATATAA--CTT--GCTTACGATT--GAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGA
gi|1 : ggATGCGGATAAAAG---ACGTCATTTTTCTAAACTTTCTGTGGATAAAAG-GCGTCAT---------------GCGGACAAAAGACGTCATTTTTCC---------AAAGTTTCTGCGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTCGTCATGCGGACAAAAGTCGACGATTTTC----TTTTTTTTCTGCGGATAAATAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGTGCATGC-ACAATCGACGGACACGATCAATgtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataatgcggataaaagacgtcatttttctaaactttctgtggataaaaggcgtcatgcggacaaaagacgtcatttttccaaagtttctgcggatataaggcgtcatgcggacaaaaggcgtcatttttccaaattttctgcggataaaagtcgtcatgcggacaaaagtcgacgattttcttttttttctgcggataaatagcgttgcggacaaaaagcgtcaagcggacaaaaagtgcatgcacaatcgacggacacgatcaataacccacatgctaagattacagatagtattg
gi|10 : gggaggtgcataatagcaaaattttccgtttccaactacaaaaccattcaaagtaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagctttccgggtcataactccaaaaccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaatttccaaattatctgtaatacataaataaacgaaaccgaggaaaatgtaaaaaaaaaaaagctgtcggaaggacagagctctcgattattataaaatatttaaaaacaagtgtgcagctaacattcactatttgaaaaaaatatttcttcaaattactaaacaaacacattatggaaatacaattttgtttaaattgagcataaatagttcatgataaattaaaacaaggaccacaaagcagtcaatttacgtccttatcaagtcaatcagaaacttatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcttaaaggaaactagttactacggagagactaacgttattgtgggaaatagtgtttatatttttaattgacatatccaagttaaaataaaatactatacctttttcatatacttataacccttttattttgtaaataaatcccatggccatccagaaactgacgatctgaagataatataatgtttttttcggtagagttaagttagtttgatattcatatttatattcgatattcaccatgaacctaacactaacactaattctagtcctaaccatagcctccaatttgaagagtttctcctttaaatatcaaaaggtagaaaaacgaatatcaaactaacttctaactgcttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataagagcacgatctctttgaaagatgccctaatatgaacatcttccatcttccgtctgtccttcagaatgttttaaataaaatgcattcactattggtcgcttgaactggatagttgtgtcaccattgtctagatttctgtagatcaacatgcgcttagaacatgcatatacatgtatataacttgcttacgattgaaatacatctaaaactgtttaagttcattacatgaatatgaaaataataaatggagtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataAACTGACAATAATTTAAAACTAATA-A-------TTCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCTATTTCGTCTTTCGATATTC-------------------------------------CCTAGTCGTA-ACCTTGTCAGTCTCCA--ATACTGAAGAGTTGCGC-A-CTT-AAAATATAGAATAAC-GAAAAACGAAAATCAAACTTACTTCAAACTaacccacatgctaagattacagatagtattg
gi|11 : TGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCTTGC-ACA---------CACGCTCAATtc
gi|12 : GTAGAC-CGAAATTA---GTTTGATATTTTCGTGTTTTGACTTTTCATATTCTACATGAAACTAAC----ACT------------A-ATCCTAGCCTT---CTCT----GCCACCA--ATATTGAAGAGTT---C-C-TT-----------------------GCAAATATCAAATTAACTTCTAACTACTGTCTGAAGTCTTC-CTATTAC-ATTTtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|13 : GAC-TGGAGTTA---G------AT---CG-GTTTCG----TC-ATGTTTGACATGAAACT-GCA---GCTA-----------A--------CCCTATATTTT---TGCATCTATGGTATTAAATGGTTTA---------AA--TATCGAAAAAC-GAAATACGAATATCAAACTAACTTGTATCTGCT---TG
gi|14 : acAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAATA--------------GTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATT
gi|15 : acAGAC-TGAAGTTA---GTTTGATATT--CGTCTTTCGATATTCGATATTCATCATGAAGTT-AC----G-------------------------ATA-ATCCT---AACCT-----------AAGAGTTATGC-C------A--TATCAAAAGA-AGAAAAACGAATATCAAACTAACTTCCTACTat
gi|16 : cAGAC-AGAAATTA---ATT-GATGGT--CATGTTTCACTTTTCGATATTCAACAAGAAA---AC----GCCA-----------C-ACCTTAACCTT----TCC---AGTCTCGA--TTATTGACGATCTACACAA-TTT-GA--TATTGAAAAACA
gi|17 : gtcAGAC-GGAAATAA---ATTTAGTATT--CATGTTTCGGCTTTCTATATTCAACATGAAACT-Aa
gi|19 : GGCAAAC-TAACATTA---GTTTGATATT--CGTGTTTCGACAATCCATATTCAACGTGAAgcatttacagttaccttct
gi|2 : GCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATGGAAAAAAAAG-CT----GTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAG-TTAAGTTG---GTTTGATATT--AATCTTT-GATATTCGATATTCATCATGAACCTAAC----ACTAATCCTAACCCTA-ATTCTAGCCGTA-ACACT---AACCTCCA--AT-TTGAATAGTTTCTC-CTTTT-AA--TATC----------AAAAT-AATATCAAACTAACTTCTAACTACT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTATTTATTTTTTT---TCATATTCATGTAAT---GA--------ACTTAAGCAGTTTTAGATGTATTTAAATCGTAAGC--ACG--T--TATATACATGTA
gi|2 : TGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgGGATAGAAGATGTCATGCGGACAAAAGTCGACGTTTTTG----TGATTTTTCctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattATGCGGACAAAAGTCGACGTT-TTTGT--GATTTTTCNNNNNNNNNNNN-NNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNN---------N---NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNTCGACGTTTTT--C--TAAATATTCGGCGGATAAAAGGCGTCATGTGGACAAAAGGCGTCATTTTTCTTCTTTTTTTTTCTGCGGACAAAAGGCGTCATTTTTCCAAATTTTC--TGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcTCGACGTT-TTT--CTAAATATTCGGCGGATAAAAG-GCGTCAT---------------GTGGACAAAAGGCGTCATTTTTCT---------T---CTTTT-T---TTT------TC--TGCGGACAAAAGG----CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGTTTTC----TTTTTTTTATTTGGATAAGGAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-Attttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|20 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------TACGGACAAAAAGGGTCAAGCGGACAAAAAGCACCTGC-ACA---G
gi|3 : ATGCGGACAAAAGTCGACGTT-TTTGT--GATTTTTATGCGGACAAAAG-GCGTTATTTTTATAAATTTTCTGCGGACAAAATGTGTAATG------------------------CGGACAAAAGGCGTC-ATGCGGACAAAAGT----CGACGTTTTTTTC--TAACTTTTCTGCGGATAAAAGGCGTCATGCGTACAAAAGGCATCATTTTTC----TATTTTTTCTGCGGACAAAAGGCGTCATTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGtc
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcATGCGGACAAAAGTCGACGTT-TTTTTCTAACTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGTACAAAAGGCATCATTTTTCT---------A---TTTTT--------------TC--TGCGGACAAAAGG----CGTCATTTTT--TTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGACGATTTTCT---TTTTTTTTCTGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTTTCTGCGGATAA-A--AA-GCGTTGCGGACAAAAAGTAC--ATGCA--CATACGTGC-T-TAA--CGT--GCTT-TTATTTGTAAATAtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|4 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcatgcggacaaaagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttcttttttGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA----------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTTT--GTTTAAATTGAGCAT-ACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAAATATC-------AATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGGaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA-----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACACTTA-TGGAAATATAATTTT--TTTTAAATTGAGCAA-ACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-
gi|6 : GCAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGACG-----CATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-G----CCGGAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|8 : TTTTTTGCAGACAAAAATATGCTAT---------------GCGGACAGAA--------TTTGCTGGAAAAGGAA---TTAT-----ATATAAGCCCTTGATGAGGACAAAATT----CGTCGTTATT--C--CTAACTAACTGCGGACAAAAAGCGTC--GGGGACAAAA
gi|8 : ATGAGGACAAAATTCGTCGTTATTC----CTAACTAACTGCGGACAAAAAGCGT-------------------CGGGGACAAAAAGTGTCAAGTGGACAAGAAACGCC-GCTACA---AACGAGCATGACTAATagtgtcaagtggacaagaaacgccgctacaaacgagcatgactaatgtcagtactcagttatatctactattc
gi|9 : ttttttgcagacaaaaatatgctatgcggacagaatttgctggaaaaggaattatatataagcccttgGTCGAC-TGAAGTTA---GTTTGCTGTT--CGTTATTCGCTTTTCGATATTTTACATAAAACT-ATCAAAGCTA-----------ACATTCT--CCGT-------------CTCCA--ATTTTAGAATGTTTCACAC-TTT-CA--TATTGAAAGATA-AAACACGAATACCAAACTAACACATAACTGGC---TG-A-T------TATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAAAgtcagtactcagttatatctactattc
blockSeqs : A T . CGGAGCG T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T T A GCT T A C AT G A G C T C A AT G G T TC AT A A A T ACACGAC C GTCC C A A . AAT T G C G TCT TT C TCT G TA AACACTAATCCTAACCCTAATTCTAGCCGTAACACTA TG A GCGCACTTAAAATATAGAATAACG A GTC AAG C AA A G C T G T T T . A T TT A TATT T GCGGACAAAAAGT TT GT A T AT AA TTA A TG A A . TTCT T T TTTTATAAATTTTCT N GGAAAAGGAATTATATATAAGCCCTTGA NNNNT TTC A T TTCT CATTTTTTTTCAAATTTTC T AACGAG
blockSeqs : . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T . A ACA A T T . . A C C . C A . A . T . AT G . T . . . A . . . . . . . T ACT C GA AACACTAATCCTAGCCTTCTCT . A TCACACTTTCATATTGAAAGATA T . TA T C T . . . . . G A T TGGA . . A A . . TT A . . GT A . . G NNNNNNNNNNNNNNNNNNNNNN G TTT T T T CATTTTTCCAAATTTTC . .
blockSeqs : G . . . T A T . . T G A . C A . G . T . AT C . C . . . C ATA G AT ACGCCACACCTTAACCTTTCCA . A ATGCCATATCAAAAGAAG A . A . . A . . A . GA . . . . . . A . . . CT T . . T CGGACAAAAGGCGTCA T C A G . . .
blockSeqs : T G . . T A T . . . . . . C . GA A . . . . C CTT G AA ATCAAAGCTAACATTCTCCGT . A TAAATATCGAAAAACG A . . GT C . . G TCTTTTTTTTTC G C T T . . .
blockSeqs : . . . . . . . . . . C . . . C GCT T AA GCAGCTAACCCTATATTTTT . T TCTCCTTTTAATATC C . . . ATTTTTTC T C A A . .
blockSeqs : . . . C ACA C AA CCTAGTCGTAACCTTGTCA . . CCTT . T T . .
blockSeqs : . . . C ATA G AT ACGATAATCCTA . . .
blockSeqs : . . . C CTT G TA
blockSeqs : . . . . . . .
blockSeqCons : ACGCTAATCCTAACCTTCTCT************************* TCACCTTAATATCGAAAAACG******* GT** GGAAGGATTCTTNA**********************
originalCons : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACT-AC----GCTA-----------A-ATCCTAGCCNTA-ACCCT---AGCCTCCA--ATATTGAAGAGTTTCGC-C-TTT-AA--TATCGAAAGACAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTNTCTAANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCT---------A---TTTTT-CGGATATAAGGCGTC-ATGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
finalCons : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAAACTACGCTAATCCTAACCTTCTCT-------------------------GCCTCCA--ATATTGAAGAGTTTCACCTTAATATCGAAAAACG-------AAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTT-TTTGT--AANTTTTCTGCGGATAAAAG-GCGTCAT---------------GCGGACAAAAGGCGTCATTTTTCTGGAAGGATTCTTNA----------------------TGCGGACAAAAGG----CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCCTGC-ACA---GACGGGCACGATCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 3333333 88888888888888888888888888888888888888888888888888888888888 666666666666666666666666666666666666666666666666 1 44444444 11 1 4444444 1 2222 1 1 222 1 222222222222222 4444444444444444444444444 44444444444444444 111111 111 111 11 1 1 1 2222 11 1111 3333333333333 11 11 11 11 11 1 11 44444444444444444444444444444444444444444444444 3333333333333 11111 1111 9999999999999999999 11 222222222
lowQualScore : 1 1 5 0000000 1 44444444444444444444444444444444444444444444444444444444444 7 6 111111111111111111111111111111111111111111111111 1 0 3 88888888 0 0 0 1 1 1 0 11 8 0 1 5 1 6 2 3 99 5 6 1 99 33 1 8 1 3 3333333 3 0 4444 1 5 1 5 333 7 2 3 4 777 55 0 1 777 2 33 111111111111111 5 5 1111111111111111111111111 66 9 11111111111111111 33 000000 1 444 000 7 22 1 0 6 3 6 5 1 2 3333 1 1 88 7 4444 3 0 8888888888888 33 33 3 9 33 33 333 3 33 5 1 1 1 8 11 1 6 0 0 0 88888888888888888888888888888888888888888888888 4444444444444 11111 1 0 5555 11 6666666666666666666 0 5 55 111111111
lowQualScore : . . . ....... . ........................................................... . . ................................................ . . . ........ . . . . . . . .. . . . . . . . . .. . . . .. .. . . . . ....... . . .... . . . . ... . . . . ... .. . . ... . .. ............... . . ......................... .. . ................. .. ...... . ... ... . .. . . . . . . . . .... . . .. . .... . . ............. .. .. . . .. .. ... . .. . . . . . .. . . . . . ............................................... ............. ..... . . .... .. ................... . . .. .........
lowQualScore : 0 0 5 5555555 0 55555555555555555555555555555555555555555555555555555555555 3 7 000000000000000000000000000000000000000000000000 0 0 2 88888888 2 2 2 0 4 0 8 00 0 8 4 2 0 7 5 2 22 2 7 7 22 88 4 0 2 3 3333333 3 7 0000 0 5 0 5 333 3 0 7 0 000 55 7 6 777 5 66 222222222222222 0 0 4444444444444444444444444 99 5 11111111111111111 66 444444 6 000 888 0 22 0 0 7 3 7 5 0 5 5555 0 0 33 0 8888 2 2 0000000000000 88 88 2 8 88 88 555 2 88 5 0 0 4 2 00 0 7 2 8 7 88888888888888888888888888888888888888888888888 3333333333333 00000 0 5 6666 00 7777777777777777777 8 7 88 444444444
consensus : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAA------ACT-A-C-GCTA-ATCCTA-ACC----TT--CT--CC-G---------CCTCCA--ATATTGAAGAGTTT--CGC--CTT--AA--TATCGAAAGAC-GAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTTTTTNT--AAATTTTCTGCGGATAAAAG-GCGTCATGCGGACAAAAGGCGTCATTTTTCT-------AA-----ATT-----------CT--------------TTNTGCGGACAAAAGG------------CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGACGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCC-TGC--ACA---GACGGGCACGATCAAT
Reference ( family-305 ) : NNGGGGNGCATAATNGCAAAATTTTCCGTTTCCGGAGCGCANCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTNATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-A-----GTCGGAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCANCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTATTAAACAAACACNTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGAGG-GAAATAGTGTTTA-------TATTTTTA-ATCGACG---TATCCAAGTTAAAACAANATAACTATACCCTTTTCATANACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAC-TGAAGTTA---GTTTGATATT--CGTGTTTCGACNTTCGATATTCAACATGAA------ACT-A-C-GCTA-ATCCTA-ACC----TT--CT--CT-G---------CCTCCA--ATATTGAAGAGTTT--CAC--CTT--AA--TATCGAAAAAC-GAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATNTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAANATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTGAATAAAATGCATTCACTANCGNTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-CGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAANAATAAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGACAAAAGTCGACGTTTTTGT--AANTTTTCTGCGGATAAAAG-GCGTCATGCGGACAAAAGGCGTCATTTTTCT-----GGAA---GGATT-----------CT--------------TNATGCGGACAAAAGG------------CGTCGTTTTT--C--CAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAGTCGNCGTTTTTC----TTTTTTTTCTGCGGACAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCC-TGC--ACA---GACGGGCACGATCAAT
gi|1 : GAGGTGCATAATAGCAAAATTTTCCGTTTC-------CAACTACAAAACCATTCAAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTCCGGGTCATAACTCCAAAACCGA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAATTTCCAAATTATCTGTAATACATAA-ATAAACGAAACCGAGGAAAATGTAAAAAAAAA-AAAGCTGTCGGAAGGACAGAGCTCTCGATTATTATAAAATATTTAAAAACAAGTGTGCAGCTAACATTCACTATTTGAAAAAAATATTTCTTCAAATTACTAAACAAACACATTATGGAAATACAATTTT--GTTTAAATTGAGCAT-AAATAGTTCATGATAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCTTATCAA-GTCAATCAGAAAC-TTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTACGGAGAGAC-TAACGTTATTGTGG-GAAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAATAAAAT-ACTATACCTTTTTCATATACTTATAACCCTTTTATTTTGTAAATAAATCCCATGGCCATCCAGAAACTGACGAT---CTGAAGATAATATAATGTTTTTTTCGGTAGAG-TTAAGTTA---GTTTGATATT--CATATTT--ATATTCGATATTCACCATGAACCTAACACTAA-C-ACTA-ATTCTA-GTC----CTAACC--ATAG---------CCTCCA--AT-TTGAAGAGTTT--CTC--CTTTAAA--TATCAAAAGGTAGAAAAACGAATATCAAACTAACTTCTAACTGCT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAGAGCACGATCTC-TTTGAAAGATGCCCTAATATGAACATCTTCCATCTTCCGTCTGTCCTTCAGAATGTTTTAAATAAAATGCATTCACTATTGGTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TAGA--------AC--ATGCA--TATACATGTATATAA--CTT--GCTTACGATT--GAAATACATCTAAAACTGTTTAAGTTCATTACATGAATATG-AAAATAATAAATGGA
gi|1 : ggATGCGGATAAAAGACGTCATTTTTCT--AAACTTTCTGTGGATAAAAG-GCGTCATGCGGACAAAAGACGTCATTTTTCC-------AA---AGTTT-----------CTGCGGATATAAGGCGTCATGCGGACAAAAGG------------CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTCGTCATGCGGACAAAAGTCGACGATTTTC----TTTTTTTTCTGCGGATAAATAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGTGCA-TGC--ACAATCGACGGACACGATCAATgtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataatgcggataaaagacgtcatttttctaaactttctgtggataaaaggcgtcatgcggacaaaagacgtcatttttccaaagtttctgcggatataaggcgtcatgcggacaaaaggcgtcatttttccaaattttctgcggataaaagtcgtcatgcggacaaaagtcgacgattttcttttttttctgcggataaatagcgttgcggacaaaaagcgtcaagcggacaaaaagtgcatgcacaatcgacggacacgatcaataacccacatgctaagattacagatagtattg
gi|10 : gggaggtgcataatagcaaaattttccgtttccaactacaaaaccattcaaagtaactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagctttccgggtcataactccaaaaccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaatttccaaattatctgtaatacataaataaacgaaaccgaggaaaatgtaaaaaaaaaaaagctgtcggaaggacagagctctcgattattataaaatatttaaaaacaagtgtgcagctaacattcactatttgaaaaaaatatttcttcaaattactaaacaaacacattatggaaatacaattttgtttaaattgagcataaatagttcatgataaattaaaacaaggaccacaaagcagtcaatttacgtccttatcaagtcaatcagaaacttatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcttaaaggaaactagttactacggagagactaacgttattgtgggaaatagtgtttatatttttaattgacatatccaagttaaaataaaatactatacctttttcatatacttataacccttttattttgtaaataaatcccatggccatccagaaactgacgatctgaagataatataatgtttttttcggtagagttaagttagtttgatattcatatttatattcgatattcaccatgaacctaacactaacactaattctagtcctaaccatagcctccaatttgaagagtttctcctttaaatatcaaaaggtagaaaaacgaatatcaaactaacttctaactgcttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataagagcacgatctctttgaaagatgccctaatatgaacatcttccatcttccgtctgtccttcagaatgttttaaataaaatgcattcactattggtcgcttgaactggatagttgtgtcaccattgtctagatttctgtagatcaacatgcgcttagaacatgcatatacatgtatataacttgcttacgattgaaatacatctaaaactgtttaagttcattacatgaatatgaaaataataaatggagtatatttactgagttgaaatactgttacaagatacctccaccactctaacttgcctcgaccacaacttatctgtgacagtagattgaacaaaatatatattatcttgcaggcatgcagatttaattcgtgtaaactaaaattaaagataactgtattccatataAACTGACAATAATTTAAAACTAATA-A-------TTCCCGTACACGTCAAGGTGTCTGTTTGATATT--CCTATTTCGTCTTTCGATATTC--------------------C--CTA-GTCGTA-ACC----TT--GT--CA-G---------TCTCCA--ATACTGAAGAGTTG--CGCA-CTT--AAAATATAGAATAAC-GAAAAACGAAAATCAAACTTACTTCAAACTaacccacatgctaagattacagatagtattg
gi|11 : TGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCT-TGC--ACA---------CACGCTCAATtc
gi|12 : GTAGAC-CGAAATTA---GTTTGATATTTTCGTGTTTTGACTTTTCATATTCTACATGAA------ACT-AAC-ACTA-ATCCTA-GCC----TT--CT--CT-G---------CCACCA--ATATTGAAGAGTT-----C--CTT-----------------------GCAAATATCAAATTAACTTCTAACTACTGTCTGAAGTCTTC-CTATTAC-ATTTtgcaacgtgaacaattcctgtaacatacaggtgttactatctggtcattgcatgcgagcattattaacatttcactctggccagataactaataacctagt
gi|13 : GAC-TGGAGTTA---G------AT---CG-GTTTCG----TC-ATGTTTGACATGAA------ACT-G-CAGCTA-ACCCTATATT----TT-------T-G---------CATCTATGGTATTAAATGGTTT---A--------AA--TATCGAAAAAC-GAAATACGAATATCAAACTAACTTGTATCTGCT---TG
gi|14 : acAAACAA-----ACAAAGCAGTCAGTATACTCCCATAACAATGT-----AGAAATA--------------GTGTAAACGGAATAGATG---TCATCAGAGTTTGGAAATTATGAAAGGAGTCTAGTTATT-CAGAAAAACATAACGATATT
gi|15 : acAGAC-TGAAGTTA---GTTTGATATT--CGTCTTTCGATATTCGATATTCATCATGAA------GTT-A-C-GATA-ATCCTA-ACC----T----------------------------------AAGAGTTA--TGC--C-----A--TATCAAAAGAA-GAAAAACGAATATCAAACTAACTTCCTACTat
gi|16 : cAGAC-AGAAATTA---ATT-GATGGT--CATGTTTCACTTTTCGATATTCAACAAGAA------A---A-C-GCCACACCTTA-ACC----TT--TC--CA-G---------TCTCGA--TTATTGACGATCTA--CACAATTT--GA--TATTGAAAAAC-AA
gi|17 : gtcAGAC-GGAAATAA---ATTTAGTATT--CATGTTTCGGCTTTCTATATTCAACATGAA------ACT-A-
gi|19 : GGCAAAC-TAACATTA---GTTTGATATT--CGTGTTTCGACAATCCATATTCAACGTGAA------gcatttacagttaccttct
gi|2 : GCAGCTT-CCGGGTCATAACTCCATACCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGCAAAAAATACCAAATTATCTGTTATACATAA-ATAAACGAAACCGAAGAAAATGGAAAAAAAAG-CT----GTTGGAAGGACAGTGCTCTCGAATATTTTAAAATATTTAAAAATAAGTGTGTATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAACAAACACCTAATGGAAATATAATTTT--GTTTAAATTGAGCAT-ACATAGTTCATGAAAAATTAAAACAAGGACCACAAAGCAGTCAATTTACGTCCATATCAA-GTCAATTAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCGTAAAGAAAACTAGTTACTATGGAGAGAC-TAACGTTATTGAGG-AGAATAGTGTTTA-------TATTTTTA-ATTGACA---TATCCAAGTTAAAACAACATAACTATACCCTTTTCATAAACTTATAATCCTTTT-TTTTGTAAATAAATCCCATGGTCATCCAGAAACTGACGAT---TTGAAGATAATATAGTGTTTCTTTCGGTAGAG-TTAAGTTG---GTTTGATATT--AATCTTT-GATATTCGATATTCATCATGAA------CCT-AAC-ACTA-ATCCTA-ACCCTAATT--CTAGCC-GTAACACTAACCTCCA--AT-TTGAATAGTTT--CTC--CTTTTAA--TATC----------AAAAT-AATATCAAACTAACTTCTAACTACT---TGTA-TTTTCAATTTTAC-ATTTACAACCACCAATAAAA-GCCGTAAAATTGCTATAATAAAAGCACGATCTCTTTTGAAATATGCCTTAATATGAACATCTTCCATCTTCTTTCTGTCCTTCAGAATGTTTTGAATAAA----ATTCACTAACATTCGCTTGAACTGGATAGTTGTGTCACCATTGTCTATTTATTTTTTT---TCATATTCATGTAAT---GA--------ACTTAAGCAGTTTTAGATGTATTTAAATCGTAAGC--ACG--T--TATATACATGTA
gi|2 : TGTCTA--GATTTCTGTAGATCA-A--CATGCGCT-TGGA--------AC--ATGCA--TATACATGTATATAA--CGT--GCTTACGATT--TAAATACATCTAAAACTGCTTAAGTTCATTACATGAATATGAAAAAAAATAAATAGAtatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgGGATAGAAGATGTCATGCGGACAAAAGTCGACGTTTTTG----TGATTTTTCctactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattATGCGGACAAAAGTCGACGTTTTTGT--GATTTTTCNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNN---NNNNN-----------NN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNTCGACGTTTTT--C--TAAATATTCGGCGGATAAAAGGCGTCATGTGGACAAAAGGCGTCATTTTTCTTCTTTTTTTTTCTGCGGACAAAAGGCGTCATTTTTCCAAATTTTC--TGCGGATAAAAGTTGTCATGCGGACAAAAGTCGAC-TGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgacgtttttctaaatattcggcggataaaaggcgtcatgtggacaaaaggcgtcatttttcttctttttttttctgcggacaaaaggcgtcatttttccaaattttctgcggataaaagttgtcatgcggacaaaagtcgactgttttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|2 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcTCGACGTTTTTCT--AAATATTCGGCGGATAAAAG-GCGTCATGTGGACAAAAGGCGTCATTTTTCTTCTTT----------TT-----------TT--------------TTCTGCGGACAAAAGG------------CGTCATTTTT--C--CAAATTTTCTGCGGATAAAAGTTGTCATGCGGACAAAAGTCGACTGTTTTC----TTTTTTTTATTTGGATAAGGAGCGT-------------------TGCGGACAAAAAGCGTCAAGCGGACAAAAAGCGCC-TGC--Attttcttttttttatttggataaggagcgttgcggacaaaaagcgtcaagcggacaaaaagcgcctgca
gi|20 : gcagcttccgggtcataactccatacccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccatggaaacaaatagcaaaaaataccaaattatctgttatacataaataaacgaaaccgaagaaaatggaaaaaaaagctgttggaaggacagtgctctcgaatattttaaaatatttaaaaataagtgtgtatctagcattcactatttgaaaagaacatttcttcaaataattaaacaaacacctaatggaaatataattttgtttaaattgagcatacatagttcatgaaaaattaaaacaaggaccacaaagcagtcaatttacgtccatatcaagtcaattagaaatattatacgagtaagtgcaaagggaataatgaacttaaaagtctggaaattcgtaaagaaaactagttactatggagagactaacgttattgaggagaatagtgtttatatttttaattgacatatccaagttaaaacaacataactatacccttttcataaacttataatccttttttttgtaaataaatcccatggtcatccagaaactgacgatttgaagataatatagtgtttctttcggtagagttaagttggtttgatattaatctttgatattcgatattcatcatgaacctaacactaatcctaaccctaattctagccgtaacactaacctccaatttgaatagtttctccttttaatatcaaaataatatcaaactaacttctaactacttgtattttcaattttacatttacaaccaccaataaaagccgtaaaattgctataataaaagcacgatctcttttgaaatatgccttaatatgaacatcttccatcttctttctgtccttcagaatgttttgaataaaattcactaacattcgcttgaactggatagttgtgtcaccattgtctatttattttttttcatattcatgtaatgaacttaagcagttttagatgtatttaaatcgtaagcacgttatatacatgtatatgcatgttccaagcgcatgttgatctacagaaatctagacactactgttactgtgattcactttacgcagtctaccctgcctcactgtaacccaaacatttttaaaattaaactgtactaaaacaattggatagaagatgtcatgcggacaaaagtcgacgtttttgtgatttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------TACGGACAAAAAGGGTCAAGCGGACAAAAAGCACC-TGC--ACA---G
gi|3 : CGGATAGAACGTGTCATGCGGACAAAAGTCGACGTTTTTG----TGATTTTTATGCGGACAAAAGGCGTTATTTTTATAAATTTTC--TGCGGACAAAATGTGTAATGCGGACAAAAGGCGTCATGCGGACA---AAtc
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatATGCGGACAAAAGGCGTTATTTTTAT--AAATTTTCTGCGGACAAAAT-GTGTAATGCGGACAAAAGGCGTCAT------------------------------------------------------GCGGACAAAAGT------------CGACGTTTTTTTC--TAACTTTTCTGCGGATAAAAGGCGTCATGCGTACAAAAGGCATCATTTTTC----TATTTTTTCTGCGGACAAAAGGCGTCATTTTTTTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttATGCGGACAAAAGTCGACGTTTTTTTCTAACTTTTCTGCGGATAAAAG-GCGTCATGCGTACAAAAGGCATCATTTTTCT--------------ATT-----------TT--------------TTCTGCGGACAAAAGG------------CGTCATTTTT--TTTCAAATTTTCTGCGGATAAAAGGCGTCATGCGGACAAAAATCGACGATTTTCT---TTTTTTTTCTGCGGATAAAAAGCGT-------------------TGCGGACAAAAAGacgattttctttttttttctgcggataaaaagcgttgcggacaaaaagtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|3 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcTTTCTGCGGATAA-A--AA-GCGTTGCGGACAAAAAGTAC--ATGCA--CATACGTGC-T-TAA--CGT--GCTT-TTATTTGTAAATAtacatgcacatacgtgcttaacgtgcttttatttgtaaataaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|4 : ctacttaccccgtgattcactttatgcagtctaccctgcctcactgtaacccaaacatttttaaaatgaaaacaatcggatagaacgtgtcatgcggacaaaagtcgacgtttttgtgatttttatgcggacaaaaggcgttatttttataaattttctgcggacaaaatgtgtaatgcggacaaaaggcgtcatgcggacaaaagtcgacgtttttttctaacttttctgcggataaaaggcgtcatgcgtacaaaaggcatcatttttctattttttctgcggacaaaaggcgtcattttttttcaaattttctgcggataaaaggcgtcatgcggacaaaaatcgacgattttcttttttGGGGAGCATAATTACAAA-TTTTCCGTTTTCGGAGCGCATCTACAAAACCATTCAAAGTAACT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGCTTTC-GGGTCATAACTCCAAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATGGAAACAAATAGAAATAAATACCAAATTATCTGTTATATATAA-ATAAACGAAACCGAGAAAAATGTAAAA----------------GAAGGACAGCGCTCTCGATTATTCTAAAATATTTAAAAACAAGTGTGCAACTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATTGTTAAACAAACTCTTAATGAAAATATAATTTT--GTTTAAATTGAGCAT-ACATATTTCATGAAAAATTAAAATAACGACCATAAAGCAGTCAATTTACGTCCATATCAA-TTCAATCAGAAATATC-------AATCAGTGCAAAGGGAATA-ATGAACTTA--AAAGTCTGGAAATTCTTAAAGGAAACTAGTTACTATGGaggtatagccgcactgaaaatgtcattgagtgtgagtcagttgtagatatgtgactgtgtataaacaaggatagtgtaacttagttttaaaatatgactattttggctataaccataatttaaatgacaggtaagtcttttttgttaacaagttgaccgaatataattgtgaatatggtgaacaacattttttcagtattttggacgagtttgaggatataagttcacgacactttattatatttg
gi|5 : TGTGATACATAATGTAAACGGAACTGAGGTTAATGTAAAAAAAAACA-----GTCGGAAGGACAGCGCTCTCGATTAATCTAAAATATTTAAAAACAAGTGTGCATCTAGCATTCACTATTTGAAAAGAACATTTCTTCAAATAATTAAATAAACACTTA-TGGAAATATAATTTT--TTTTAAATTGAGCAA-ACATAGTTCATGTAAAATTAAATCAAGGAACCCAAAGCAGTCAATTTACGTCCATATCAA-GTCAATCAGAAATATTATAC--GAGTAAGTGCAAAGGGAATA-ACGAACTTA--AAAATCTGGAAATTCTTAAAGGAAACTAATTACTATGGAGACAC-
gi|6 : GCAGTCAATGTTTAATAAGGATATTTGTTCGAGTTTTTAAGTGACCACGAAATGAAAATACAACTTTATGTTAAAAAGGAGCATGACG-----CATGTAAAATTAAAACAGAAATTACAAATCTATCAGCATATACCTGTAACAA-G----CCGGAAGCATTATACATGA-TAATTGTGAATCGAAAA-A--AGCCTC--AGGGTTTTGACATTTTTAAGGGAAA--GGCCATTGAAAAGAAAC-CAAAGCTATTGAGGTGAAACCGTTTTTAACACGACTATTTTTGCATCAGCGTCCTACCCACATTAAA
gi|8 : TTTTTTGCAGACAAAAATATGCTATGCGGACAGAA--------TTTGCT-----GGAAAAGGAATTATATATAAGCCCT--------------TGATGAGGACAAAATT------------CGTCGTTATT--C--CTAACTAACTGCGGACAAAAAGCGTC--GGGGACAAAA
gi|8 : ATGAGGACAAAATTCGTCGTTATTC----CTAACTAACTGCGGACAAAAAGCGT-------------------CGGGGACAAAAAGTGTCAAGTGGACAAGAAACGCC--GCT-ACA---AACGAGCATGACTAATagtgtcaagtggacaagaaacgccgctacaaacgagcatgactaatgtcagtactcagttatatctactattc
gi|9 : ttttttgcagacaaaaatatgctatgcggacagaatttgctggaaaaggaattatatataagcccttgGTCGAC-TGAAGTTA---GTTTGCTGTT--CGTTATTCGCTTTTCGATATTTTACATAAA------ACT-A----TCA-AAGCTA-ACA----TT--CT--CC-G---------TCTCCA--ATTTTAGAATGTTTCACAC--TTT--CA--TATTGAAAGAT-AAAACACGAATACCAAACTAACACATAACTGGC---TG-A-T------TATTGCGATTTATAG----CAATAACATGAC-TAAGATTTTTATTATAAAgtcagtactcagttatatctactattc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCTTAACATGATTTTATTCATGGAAATTATATAGTCGAATTGGAGTAACATTGACTGTGATTAAATAGTTAACACATGGCTGTGCATAAAAATTAGTGGATTGCTTGAGGGAATGTTTTTATATAACCATAACTTAAATAAAAGGTAAGCAAATATATCAATTTTTTTCAATATTTTGGACGAGTTTGAGGACATAACATTTTGATATTTGA
Unaligned ( gi|18 ): AGCAAATATGCATTTGCATAGATATGTCCCAACATTGTTTATTCATCATTAACAAC