lowQualScore : 11111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 11 1 777777777777777 222 33 11 99999999999999999999999999 1 1 11 2 1 333 1 8888888888888888 2 1 1 1 55555555 2 1 1 33 11 1 1 33 1111 22222222 4444444444444 11 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 22 555555555555555555555555555 88888888888888888888888 222 2 22222 11 22222 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 2222222 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1111 111111 11111 111111111111111 2222 11 1 222 22 2222222 1 111111 11111 22222222222222222222 111111111 11111111 22
lowQualScore : 2 7 6 0 22 5 6 6 7 5 6 88 6 2 1 555555555555555 333 55 88 33333333333333333333333333 4 6 7 6 2 6 88 3 3 888 6 7 7 3 6 3 7 4 4444444444444444 0 5 4 7 5 44444444 4 0 6 2 5 6 5 77 22 1 0 33 6 7 7 4 6 1 5 4 22 6 8888 3 1 0 33333333 8 0000000000000 11 444 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 11 0 7 6 999999999999999999999999999 3 44444444444444444444444 6 7 111 6 3 1 3 0 8 00000 11 2 00000 7 88 7 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 7 2 6 0 6666666 3 3 5 44444444444444444444444444444444444444444444444444444444444444444444444444444444 9 0 0000 444444 5 77777 555555555555555 5 66 2222 44 66 99 00 2 333 777 4 00 8888888 6 4 9 1 6 0 000000 5 2 0 6666 44 44 3 44444 55555555555555555555 555 1 888888 44 999999999 2 55555555 0 55 444 2 44 2 88888 3 66666 2 3
lowQualScore : . . . . .. . . . . . . .. . . . ............... ... .. .. .......................... . . . . . . .. . . ... . . . . . . . . ................ . . . . . ........ . . . . . . . .. .. . . .. . . . . . . . . .. . .... . . . ........ . ............. .. ... .................................................................................. . .. . . . ........................... . ....................... . . ... . . . . . . ..... .. . ..... . .. . . ....................................................................................... . . . . . ....... . . . ................................................................................ . . .... ...... . ..... ............... . .. .... .. .. .. .. . ... ... . .. ....... . . . . . . ...... . . . .... .. .. . ..... .................... ... . ...... .. ......... . ........ . .. ... . .. . ..... . ..... . .
lowQualScore : 5 3 0 7 77 0 0 7 3 0 0 33 0 0 0 000000000000000 333 33 33 33333333333333333333333333 7 0 0 0 0 7 33 3 3 333 0 3 3 0 0 0 0 0 0000000000000000 0 0 0 0 0 55555555 0 0 0 5 0 0 0 77 00 0 7 33 0 3 3 0 0 0 7 7 00 0 0000 0 4 8 22222222 0 0000000000000 00 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 00 7 0 0 777777777777777777777777777 7 00000000000000000000000 0 0 000 0 7 2 2 8 0 00000 00 2 00000 0 00 0 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 5 0 2 0000000 0 0 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 7 4 6666 444444 0 55555 111111111111111 0 99 6666 66 11 00 55 5 999 000 0 66 0000000 0 5 4 6 6 2 555555 1 6 9 5555 22 22 1 66666 00000000000000000000 444 5 888888 22 000000000 0 55555555 8 33 777 4 77 6 33333 1 11111 9 3
consensus : ATCACACTCAATCAANTTGTAAATGTGACCTCGAACTTCGACCTATTGATAGTTTTCTCNTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGCTTTTTCT--AATTCGCCGCGGGGAAA--------ACATAG-TTTGATAAAATG---ATA--AGTTG--TTGATAGA---GTTGGT-TA----------ATA-CCTNTCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTC-GATATTTGC-CCTTCTATATAAAAATAAGGTTATANAGAATCCGGTTGTAAGGAATTGTCNGGTACAGGCATGCTTTTGTNAAATAACTTTACGTTAATGAATGTGCTGTTTTAAGTGNATATGCTTAAAGAGTTACTGTANNTGGCAATANACTTAGTAAGTTATCCAAGGACGAAACAATAANTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGNTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCGAGATACANAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-T-----------TCCCAG--AA---AAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTANAAA-----CAAAA-TATGATAGAGTACCTCAGAGCCCCCATCA-A-TTTTTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCNACTGC--------CAT--AC--------ACACCACCTACCCAAATTTGCAGGAGTGGTGGGNGACACTCTCCTCTACGTCTTGGCTC-GTA-----GT--ACTGGGAGTGAAACTCGGTTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GC------G------TTTCCTTAATAAAA-------ACGCTTT----------A---------------ACT----AT---TGGAGTAAATANTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGCGGTG-------TACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA--ACATNTAANNNNNNNTCGAAGTGTATTTGTGAGTGTGTGCGCGCGTGCGTGANTNNGNNNGTGNNNNCGNGCANGTGTTTAAATAATAAC----GC------TTAAA-AGTAA-----AAA-A--A-A-A------CA-TTG--GCGTAAATAACAACCATATTTTC-TA--AGAAATN-AGTAGAATTCAGCAGTTAAGTGT---TTA-AG-ATATCAAACATTCAAGTTTCGGAGCGGTTCCCCGTATCCCAATAGCGGGAG------TAGAGTAGNATTACCGCCACC----AGC--GGGAGAGGGA--CACCCT-TCCC--A--CACACTAC--------------------C---CCC------AGGTTGCC--TCTCCCC------AATAA-------TTGAAGTGCTCTTACGCCCATTAAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( gi|2 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGCTTTTTCT--AATTTGCCGCGGGAAAA--------ACGTATATTTGATAAAATG---ATACAAGTTG--TTGATAGA---GT-----------------A-A-CCTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATC-GATATTT-C-CCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTATATATATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCTGGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-T-----------TCCCAG--AA---AAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAT----CAAAA-TACGACATAGTACCTCAGAGCCCCTATCAAAATGTCTTA-ACCTGCAGGTTG---TTGACCAAGCTAGGCCACTGC--------TAT--AC--------ACACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GT--ACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTCT------GC------G------TTTC--TAATAGAA-------A----------------A---------------ACT----AT---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGCAGTG-------TACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAA-AACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAAAGAAC----GC------TTAAA-AGTAA-----AAA-A--A-A-A------CA-TTG--GC-TAGATAACAACCATATTTTC-TA--AGAAATT-AGTAGAATGTAGCCGTTAAGAGT---TTA-AC-ATATCAAACTTTTAAATTTCGGAGTGGTTTCCCGTACCCCAAAAGCGGAAG------TAGAGTAGTATTACCGCTACC----AGC--GGGAGAGGGA--CACCCT-TCCC--G--CACACTAC--------------------C---CCC------AGGTTGCC--TCTCTGC------AACAA-------CTGAAGTGCTCTTACACGTATTAAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGCTTTTACT--AATTCGTGGTGGGGGGGGGGGGGGGACATAGCTTTGATAAAATG---ATACCAGTTG--TTGATAGA---GTTGGTTTAATATATACATATA-CCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTC-GATATTT-GACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTTAATGAATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTATATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAAT-TGGTTTGTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-T-----------CCCTAGGAAA---AAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----AAAAA-TA--ATAGAATACCTCAGAGCCCCCATC--ATTTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGACTCT-TCAT-TACGTCTTAGTTT-GTA-----GT--ACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTCT------GCGTATGTG------TTTCCTTAATAAAAGCGTTTTA----------------A---------------AGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGCGGTG-------TTCTGAGTTTGATATTCGTTGGAGATTCGCTTCTA
gi|8 : ggatacctgacctgttgaagtgacattaaaccaATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATAGATTTTATAAAATA---ATA--AGTTC--TTGATAGA---GTTAATATATACAT-----ATA-CCTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATC-TCGGATATTTGC-CCTTCTATAT-AAAATAAGGTTtctaagtgttagcgggcgggcgggcgggcgggcttgtgggcgtgtgtgtttaaataaacatgcttaaaagtaaaaacaacaacattggcgtttatagcaaccataatttctaagaaatgagtggaattcagcaattagtgtttagatatcaaacattcaagttttggagcggttccccgtatcccaatagcggaggtagagtagtattactactaccagcaggagagggatacacccttcccacacactaccccccccccccccccccccccccctctcctcggttgcctctctgcaacaatagaagtgctcagacaccaattaaagtatcgtttacctacaaaataattataaatacgctaagtttctcaaatggcaagccattcctcacaaaa
gi|3 : ggtaactgtaaactattgaaatgttaaacccGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGCTTTTTCT--AATTCGCCGCGGGAAAA--------A------TTTGATAAAATGTTGATA-GAGTTGGTTTAATATATACAT-----------------A-AACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTC-GATATTTGC-CCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC---------TGT----TTT-AAGTATATATGCTTAAAGAGTTACT---GC---CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-G----C---CAAG-GTCTGCACTT-T-----------TACCAG--AAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAA-----CAAAA-TATGGCAGTGTACCTCAGAGTCCCCATCACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--AC--------ACACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GT--ACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GC------GTCTGTATTTCCTTAATAAAA-------ACGCTTT----------AAAGTAAAAAAAAAATACT----AT---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGCAGTG-------GACTAGGTTTGATACTCGTTCGAGATTCGCTTTTAAA-TACATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNTTTAAACAATAACGCTTAAA-AGTA-A-AGAAAAACA-TTG--GCGTAGATAACAACCATATTTTC-TC--AGAAATT-AGTAGAATGTAGCCGTTAAGTGTGTATTATATGATATTAAACATTCAAGTTTCGGAGCGGTTCCATGTATCCCAATAGTACAAT------TAAAGTATTGTT
gi|4 : TGCAA--AGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCCCC----AACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAGAAAAATCCCA---AA---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAATATAGCACACCTATAATATAGTACCTCAGAGCCCTCATCAAA-TGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCAC--------ACACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GT--ACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGT------G------TTTCCTTAATAAAA-------GCGTTTTAAAGTAAAATA---------------ACT----AT---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGCAGTG-------TACTGGGCTTAATACTCGTTGGAGATTCGCTTTTAA-----ATATA--------TCGAAGTGTATTTGTGAGTGTGTGCGCGCGTGCGTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAAC----GC------TAAAA-AGTAA-----AAT-T--A-A-A------CA-TTG--GCGTAAATAACAACCATATTTTC-TA--AGAAATT-AGTAGTATTCAGCAGTTAAGTGT---TTA-AG-CTATCAAAC----A---TTCGGAGCGGTTCCCCGTATCCCAACAGCGGGAG------TAGAGTAGAATTACCACCACT----AGCGGGGGAGAGGGA--CACCCT-TCTC--T--GACACTAC--------------------C---ACC------AGGTTGCT--TCTTCTC------AATAA-------TTGAAGTACTCTTACGCTCATTAAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAt
gi|20 : tataatcaattaaaatctacatgggacactgcagaACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-C-----------TCCCAG--AC---AAATgga
gi|23 : atgccgccctCGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGT-----------TTTCAG--AA---AAA
gi|17 : ACTCTCTACTACGTTTTGCCTCTGTACATGGGT--ACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATaa
gi|6 : ggatggaataaCCTTTACGTCTTGACTC-GCG-----GTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTT-----TAAATAa
gi|6 : taaatacttatcatacccctcccccgtaaaactcactagaatgcatgatttgaaAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGCGGTG-------TACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGATAATAATGCTTAACAG-----TAAAAAAAAACTTTGGC------CTAGA----AA-----ACA-A--C-C-A------TA-TTT--TC-TAAGAAATGAGTATAATTC------AGCAGTT------ACTGT-----TTAAGA-------------TATCAAACATTCAAGTTTCGGAGCGGTTCCCCGTATCCAAATAGCGGAAG------TA---TA--ATTACCGCTACC----AGC--GGGAGAGGGA--CGCCCT-TCCCATA--CACACTTC--------------------C---CAA------AGGTTGCC--TCTCTCC------AACAA-------TTGAAGTGCTATTACACCAAATAAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagataataatgcttaacagtaaaaaaaaactttggcctagaaaacaaccatattttctaagaaatgagtataattcagcagttactgtttaagatatcaaacattcaagtttcggagcggttccccgtatccaaatagcggaagtataattaccgctaccagcgggagagggacgcccttcccatacacacttcccaaaggttgcctctctccaacaattgaagtgctattacaccaaataaagtgtagtttacctacaaaatacttattattacgctaattaactcaaaaaggcaagccgttccatttaaaag
gi|5 : taCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTTAAg
gi|1 : TTTAAATAAACAT----GC------TTAAA-AGTAA-----AAACA--ACA-A------CA-TTG--GCGTTTATAGCAACCATAATTTC-TA--AGAAATG-AGTGGAATTCAGCAATTA-GTGT---TTA-G--ATATCAAACATTCAAGTTTTGGAGCGGTTCCCCGTATCCCAATAGCGGAGG------TAGAGTAGTATTACTACTACC----AGC--AGGAGAGGGATACACCCT-TCCC--A--CACACTACCCCCCCCCCCCCCCCCCCCCC---CCCTCTCCTCGGTTGCC--TCTCTGC------AACAA-------TAGAAGTGCTCAGACACCAATTAAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|7 : ggatacctgacctgttgaagtgacattaaaccaattacactcaatcaacttgtaaatatgaccttaaacctcgacctattgatagttttctctttcttgccaacgtcacattttcgtctcatcatgttaaactcatgtacttatttgtagcttttactaattcgtggtgggggggggggggggacatagctttgataaaatgataccagttgttgatagagttggtttaatatatacatatacctatctgttacttcagaggctcatttttgttaattacaagcaaagaaaacagagtcaacaaagtcaattcctcgatatttgaccttatatataaaaataaggttatacagaatccggttataaggaattgtcagatacaggcatgcttttgtaaaataactttacgttaatgaatatgctgttttaagtgaatatacttaaagagttactgtatatggcaataaacttagtaagttatccaaggacgaaacaataactgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaagattgaaaacattaagatccacctgatcaattggaattggtttgttcctgcaatattttagggcttatctttaactgtgtagctgcacgatacaaaaaacactgtacatggcacactgtacatgccatcccccaacacacacatacacaccggcgtagctacacgaaggcactgctgaccaaggcctgcactttccctaggaaaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaaaataatagaatacctcagagcccccatcatttttttaattgaccaatctagggtactggcatacatgtacaaacatcacctaccaaaatttgcaggagtgttgggggactcttcattacgtcttagtttgtagtactgggagtgaaactcgattaagattcactttttaatacatcttatgtttagacttaaattttttgtgtgtctgcgtatgtgtttccttaataaaagcgttttaaagtaaagataaatggagtaaatactaatcatatccctcccccgtaaaactcactagaattcatgatttaattatttacgtcttgactcgcggtgttctgagtttgatattcgttggagattcgcttctatctaagtgttagcgggcgggcgggcgggcgggcttgtgggcgtgtgtgTTTAAATAATAAC----GC------TTTAA-AGTAAT----AAA-G--A-A-A------CG-TTG--GCGTAGACTTCAACGATATTTTC-TA--AGAAATA-AGTAGAATTCAGCAGTTA-GTGT---TTA-AG-ATATCAAACATTCATGTTTCGGAGCGGTTCCCAGTATCCTAATAGCGGAAG------TAGAGTAGTAGTACCGTCACC----AGC--CGGA-AGGGT--CACCCT-TCCC--C--CACACTAC--------------------C---CCC------AGGTTGCC--TCTCCCC------AATAA-------TTGAAGTGCTCTTAAGCCCATTAAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAA
gi|5 : atacgcttgggagattcgcttttaaatacatcgaagtgtgcgtgcgtatgcgcgtgagtgtgTTTAAATAATAAC----GC------ATAAA-AGTAA-----AAA-A--A-A-A------AAATTT--GCGTAAATAACAACTGTATTTCC-TA--AGAAATG-AGCAGAATTCAGCAGT-AAGTGT---TTA-AG-ATATCAAACCTTT----TTCGGAGCGGTTCCCCGTATCTCAATAGTGGTAGCAGGTGTAGAGTAGAATTACCGCCACC----AGC--AGGAGAGGGA--CACTCT-TCCC--A--CACACTAC--------------------C---CCC------AGGTTGCC--TCCCCACCCTCCAAATAA-------TTGAAGTGCCCATACACCCATTAAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAgg
gi|9 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgAATAAC----GC------ATAGA-AGTAA-----AAA-G--A-A-A------CA-TTTACGC-AAAATAACAACCATATTTTG-TA--AGAAATG-AGTAAAACTCAGTAGTTG-GTGT---TTA-AG-ATATCAAACATTT---TTTCGGAGCGGTTCTCCGTATCCGAATAGAGGGAG------TAGAGTAGAATTACCACCACC----AGC--GGGAGAGGGA--CACCCT-TCCC--A--CACACTAC--------------------C---ACC------AGGTTGCCTGTCTCTG--------ATAA-------TTAAAGTGATCTAATGCCCATTGGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAAgca
gi|12 : t----GT------TTAAA-ATTAA-----AAA-A--A-GGA------CA-TTG--GT----GTAA--ACCCTATTTTTATACCAAATATTGAGTAGAATGCAGCAGTTGGTTTT---TTA-AG-ATATCAAACTTTTagaa
gi|10 : t-TAAATAATA----TATTTTC-TA--AGATATG-AGTAGAATTCAGTAGTTT-GTGT---TTA-AG-ATATCAAACATTT----TCCGCGGCAGTTCCCCGTATCCAAATAGCGGGAG------TAGAGTAGCATTACCGCCACC----AGC--GGGAAAGGGA--CACTCT-TCCC--A--CACTCTAC--------------------C---CAC------AGGTTGCC--TCTCCCC------AATTA-------TTG----------ACAT---TCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAAccaacggcgaccccctacctccaagagggaggaggcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|11 : aatagcgtattaaagtacgaactgttaaagTAGAATTCAGCAGTTA-GTGT---TTA-AG-ATAACAAACATTCAAGTTTAGGAGCGGTTCCCCGTATCCCAATAGTGGAAG------TAGAATAGTATTACCGCTATC----AGC--GGGAAAGGGA--CACCCT-TCCT--A--CACACTAC--------------------C---AAC------AGGTTGCC--TATCTCC------AACAA-------TTGAAGTGCTCATACACCAAATAAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|13 : aTTTCGGAGCGGTTTCTCTTA--------GCAGGAG------TAGAGTAGAATTACCGCCACC----AGC--GGGAAAGGGA--CACCCT-CGCC--A--CACGCTAC--------------------C---CAC------AGGTTGCC--TCTCCCC------AATAT-------TTGAAGTGCTCTAACGCCCATTAAAga
gi|19 : CAGGAG------TAGAGTAAAATTACCACCACC----AGT--GGGAGAGGGA--CACCCT-TCTT--A--CACACTAC--------------------C---CGC------AAGTTGCC--TCtaatcagttaaaaaggcaagccgttccttttaaaagaaa
gi|16 : cGTATTACC---ACC----AGC---------------ATCCT-TTCC--GGCCACACC-C--------------------CAAACCC------AGAATGCC--TCTTCCA------AATAA-------TTGAAATGCTCTTACACCCATTG----ATCATTTACT--CAAGATctcccc
gi|15 : TGCCCCTACC----AGC--GGGAGAAGAG--CACCCT-ACCC--A--CACACCAC--------------------C---CAC------AGATGGTC--TCTCCCA------AATAA-------TT-AAGTGCTGTTGCGCCCATTGAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-ggcaatcgttccttttaaaagg
gi|12 : caggagCCCCTACCTCCAAGA--GGGAGGAGG------CCTATCCC--A--CA-ATTTT--------------------T---CCC------AGGTTGCA--TCTTCCC------AATAAATTATAACTGAAGTACTCCTAGACCTATTGAAGTATTTTTTATATACAgta
gi|18 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacATTAAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|21 : acaATTAAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCAga
gi|24 : caccaTG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTgtaagtgcttcgttt
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAA
gi|13 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatT----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAgg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AAGTAAATTTATCCAAAATATCACTTTTATGCAGTATTTGATGTTTAAGATGTAAAACATTTTTAGGAGAGTCCCTCCTACCCATCCTGCGGAAATTGGTAGTAACCCTCTAACACAGGTAGATACGTCGTCTAACATTCTTCCCCAGGTTGACCCCCT
Unaligned ( gi|22 ): AATTGCAGTATTTGATTTTTTAAGATATCAATATTTTTTCAGGGGAGGCCCCTCGTACCCTATCAGCAAGAGACCCCC
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 22 22222222222222222222222222222222222 11 3333333333333 111 2 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 222222 11 22 1 3333 444444444444444444444444 22222 22222 5555555555555555555555 11111111111111111111111111111111111111 2222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 11111 111111111111111 11 222222 111111111111111111 1111111111 1111111
lowQualScore : 0 1 3 2 1 1 3 33 6 4444444444444444 3 77 2 22222222222222222222222222222222222 1 3 2 33 0 2 3 3 1 0 1 0 0 1 1111111111111 7 11 0 888 1 3 0 1 3 3 0 1 2 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 888888 77 2 33 33 3 0 2 2222 1 222222222222222222222222 2 1 0 1 0 8 00000 00000 3 1111111111111111111111 2 2 4 55555555555555555555555555555555555555 1 1111111 5 1111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 4 44444 222222222222222 444 4 4 8888 1 3 44 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . . . . .. . ................ . .. . ................................... . . . .. . . . . . . . . . . ............. . .. . ... . . . . . . . . . . . . . ... . . .. ... ............................................................................. . .. ...... .. . .. .. . . . .... . ........................ . . . . . . ..... ..... . ...................... . . . ...................................... . ....... . ............................................................................... ...... . ..... ............... ... . . .... . . .. ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 7 0 2 0 0 0 2 88 5 8888888888888888 2 55 5 55555555555555555555555555555555555 0 5 5 88 2 5 2 2 0 7 0 7 7 0 3333333333333 3 77 7 777 0 7 7 0 2 2 5 0 0 2 0 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 888888 22 5 88 88 0 0 5 5555 0 000000000000000000000000 5 0 8 4 8 0 00000 00000 2 2222222222222222222222 5 5 2 22222222222222222222222222222222222222 0 7777777 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333 555555 0 00000 222222222222222 666 5 0 5555 0 1 44 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-AGTTGTTGATAGAGTTGGT-TT---------AT----ATA----------CCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-ATG-ATATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--TGGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAA------TACGACANAGTACCTCAGAGCCCCCAT--CAAA-TNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCG------T------TTCCTTAATAAAAGCGTTTTA---------------A----------C-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTT-AAA-ACATATAA-------TCGAAGTGTATTNGCGAGCGCG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGTNCGTGTGTGTGTTTAAATAATAACGC------TTAAA-AGTAA-----AAA-A--A-A-A------C-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATCACACTCAATCAANTTGTAAATGTGACCTCGAACTTCGACCTATTGATAGTTTTCTCNTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACATA-G-TTTGATAAAATGATA--AGTTGTTGATAGAGTTGGT-T----------A-----ATA----------CCTNTCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATANAGAATCCGGTTGTAAGGAATTGTCNGGTACAGGCATGCTTTTGTNAAATAACTTTACGTTAATGAATGTGCTGTTTTAAGTGNATATGCTTAAAGAGTTACTGTANNTGGCAATANACTTAGTAAGTTATCCAAGGACGAAACAATAANTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGNTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCGAGATACANAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAA------TATGATAGAGTACCTCAGAGCCCCCAT--CAA--TTTTTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCNACTGC--------CAT--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGNGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGGTTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCG------T------TTCCTTAATAAAAACGCTTTA---------------A----------C-TA----T---TGGAGTAAATANTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTT-AAA-ACATNTAANNNNNNNTCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGANTNNGNNNGTGNNNNCGNGCANGTGTTTAAATAATAACGC------TTAAA-AGTAA-----AAA-A--A-A-A------C-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATNAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCAGTTGTTGATAGAGTTGGT-TTAATATATACAT----ATA----------CCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTTAATGAATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTATATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATT-GGTTTGTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAA------TA--ATAGAATACCTCAGAGCCCCCAT--CAT--TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTCT------GCG------TATGTGTTTCCTTAATAAAAGCGTTTTA---------------A----------AGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCT-A------------------TCTAAGTGT--TAGCGGGCG-G---GCGGGCGGGC--GGGCTTGTGGGCGTGT----------GTGTTTAAATAAACATGC------TTAAA-AGTAA-----AAACA--ACA-A------C-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGT------ATTAA-AGTAC-----GAA---------------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGT------TTAAA-ATTAA-----AAA-A--A-GGA------C-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatGATGGAATAAACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : gATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATACAAGTTGTTGATAGAGT----------------------A-A----------CCTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTATATATATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCTGGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAA------TACGACATAGTACCTCAGAGCCCCTAT--CAAAATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTCT------GCG------T------TTC--TAATAGAAA------A---------------A----------C-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAA-ACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAAAGAACGC------TTAAA-AGTAA-----AAA-A--A-A-A------C-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG----------TTGATAGAGTTGGT-TT---------A-----ATATATACATAAACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC--------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAA------TATGGCAGTGTACCTCAGAGTCCCCATCACAA--TTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCGTCTGTAT------TTCCTTAATAAAAACGCTTTAAAGTAAAAAAAAAATA----------C-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTT-AAATACATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAACAATAACGCTTAAA-AGTA-A-AGAAAAAC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTA
gi|4 : AGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCAT--CAAA-TGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTA---------------AAGTAAAATAAC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTT-AAA----TATA--------TCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGC------TAAAA-AGTAA-----AAT-T--A-A-A------C-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTT-AAgga
gi|5 : GAGCGTGCATGCGTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGC------ATAAA-AGTAA-----AAA-A--A-A-A------A-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTT-AAA-gca
gi|6 : TTTAGATAATAATGC------TTAAC-AGTAA-----AAA-A--A-A-A------C-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagataataatgcttaacagtaaaaaaaaactttggcctagaaaacaaccatattttctaagaaatgagtataattcagcagttactgtttaagatatcaaacattcaagtttcggagcggttccccgtatccaaatagcggaagtataattaccgctaccagcgggagagggacgcccttcccatacacacttcccaaaggttgcctctctccaacaattgaagtgctattacaccaaataaagtgtagtttacctacaaaatacttattattacgctaattaactcaaaaaggcaagccgttccatttaaaag
gi|7 : taaatacttatcatacccctcccccgtaaaactcactagaatgcatgatttgaacctttacgtcttgactcgcggtgtactgggtttgatactcgttggagattcgcttttaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACGCTTGGGAGATTCGCTTTT-AAATACAT------------CGAAGTGT----------GCG--TGCGTATGCGC--GTGAGT--------------------GTGTTTAAATAATAACGC------TTTAA-AGTAAT----AAA-G--A-A-A------C-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTTA-GTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--AGTTCTTGATAGAGTTAATAT----------ATACATATA----------CCTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGC------ATAGA-AGTAA-----AAA-G--A-A-A------C-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 2222 7777777777777777777777777777777 11 555555555555555 444444 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333333 11111 1 3333 444444444444444444444444 22222 22222 5555555555555555555555 11111111111111111111111111111111111111 2222222 66666666666666666666666666666666666666666666 222222 111 222222 111111111111111111 1111111111 1111111
lowQualScore : 3 2 1 3 33 6 8888888888888888 3 5555 2 8888888888888888888888888888888 1 1 2 33 0 2 3 3 999999999999999 7 333333 3 0 3 3 4 3 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 55555555 1 11111 1 0 2 2222 0 222222222222222222222222 1 0 0 1 0 8 00000 00000 3 1111111111111111111111 2 2 0 55555555555555555555555555555555555555 1111111 5 88888888888888888888888888888888888888888888 0 2 999 1 2 555555 222222 4 55 4 4 444 3 4 8888 3 222 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . .. . ................ . .... . ............................... . . . .. . . . . ............... . ...... . . . . . . . . . . ... . . .. ... ............................................................................. . .. ........ . ..... . . . .... . ........................ . . . . . . ..... ..... . ...................... . . . ...................................... ....... . ............................................ . . ... . . ...... ...... . .. . . ... . . .... . ... ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 2 5 0 2 88 5 2222222222222222 2 8888 5 0000000000000000000000000000000 2 0 5 88 2 5 2 2 333333333333333 3 000000 3 7 2 2 2 2 2 2 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 55555555 0 88888 0 0 5 5555 2 000000000000000000000000 0 2 8 4 8 0 00000 00000 2 2222222222222222222222 5 5 8 22222222222222222222222222222222222222 7777777 7 99999999999999999999999999999999999999999999 5 0 777 0 5 777777 555555 0 55 0 0 666 9 0 5555 1 000 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTT----AATA------TATAC------CTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCG------T------TTCCTTAATAAAAGCGTTTTA---------------A----------C-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTT-AAA---ATATAA-------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTT----A---------TATAC------CTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCG------T------TTCCTTAATAAAAGCGTTTTA---------------A----------C-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTT-AAA-ACATATAA-------TCGAAGTGTATTNGCGAGCGCG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGTNCGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCA-GTTGTTGATAGAGTTGGTTT----AATATATACATATAC------CTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTT-AATG-AATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTA--TATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATTGGTTT-GTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAATA--------ATAGAATACCTCAGAGCCCCCATC-A-T-TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTCT------GCG------TATGTGTTTCCTTAATAAAAGCGTTTTA---------------A----------AGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCT-A------------------TCTAAGTGT--TAGCGGGCG-----G-GCGGGCGG--GCGGG--CTTGTGGGCGT------GTGTGTTTAAATAAACATGCTTAAAAGTAA-AAACAACA-AC-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGTATTAAAGTAC-GAA-------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGTTTAAAATTAA-AAA-AA-GGAC-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : ggatggaataaATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATAC-AAGTTGTTGATAGAGT---------------------A-AC------CTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTA-TATA-TATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCT--GGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAATACG------ACATAGTACCTCAGAGCCCCTATCAA-AATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTCT------GCG------T------TTC--TAATAGAAA------A---------------A----------C-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAA-ACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAAAGAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG-----------TTGATAGAGTTGGTTT----AATA------TATACATAAACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC----------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC--------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAATATG------GCAGTGTACCTCAGAGTCCCCATC-ACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCGTCTGTAT------TTCCTTAATAAAAACGCTTTAAAGTAAAAAAAAAATA----------C-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTT-AAATACATTTAA-------
gi|3 : TTTAAACAATAACGCTTAAAAGTAA-AGA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaacaataacgcttaaaagtaaagaaaaacattggcgtagataacaaccatattttctcagaaattagtagaatgtagccgttaagtgtgtattatatgatattaaacattcaagtttcggagcggttccatgtatcccaatagtacaattaaagtattgttt
gi|4 : gtaaatgtgaccttgaacttcgacctattggtagttttctcgttcttgcgaacgtcacatttttgtttcgtcatgttcgactcaaatgtacttatttgtagctttttctaattcgccgcgggaaaaatttgataaaatgttgatagagttggtttaatatatacataaaccttgctgttacttcagaggctcatttttgtttattacaaacaaagaaaacagacaacaaagtcaaatcctcgatatttgcccttctatataataaggttataaagaatccggttgtaaggaattgtccggtacaggcatgtttttgttaaataactttactgttttaagtatatatgcttaaagagttactgccaatatacttgtaagttatccaaggacaaaacaataaatgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaaaactgaaaacattaggatccatctgattaattgcaatttgttttgttcctgcaataacgttgggcttatccttaacggtgtagctgcaaaatacataaaacactgtacatgacacactacacataccctccctcaacacacacatacacaccggcgtagctacacgaaggctcgccaaggtctgcacttttaccagaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacaaaatatggcagtgtacctcagagtccccatcacaatttctagacctgcaggttaactttaaccaagctaggccactgccaaatacacacacacaccacctacccaaatttgcaggagtggtgggcgacactctcctctacgtctagtttgtagtactgggagtgaaactccattatgattcactctttaatacatcttataatttagtcttaagtttcttgtgtgtctgcgtctgtatttccttaataaaaacgctttaaagtaaaaaaaaaatactattggagtaaatagtaatcatacccctcccccgtaaaactcactagaatgcatgatttgatcctttacgtcttgactcgcagtggactaggtttgatactcgttcgagattcgcttttaaatacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCATC-A-AATGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTA---------------AAGTAAAATAAC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTT-AAA----TATA--------TCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGCTAAAAAGTAA-AAT-TA-A-AC-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTT-AAgga
gi|5 : GAGCGTGCATGCGTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGCATAAAAGTAA-AAA-AA-A-AA-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTT-AAA------TAA-------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-----------TTTAGATAATAATGCTTAACAGTAA-AAA-AA-A-AC-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAgca
gi|7 : ATACGCTTGGGAGATTCGCTTTT-AA----ATAC-A-------TCGAAGTGT----------------------GCGT--GCGTATGCG----------CGTGAGTGTGTTTAAATAATAACGCTTTAAAGTAATAAA-GA-A-AC-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTT-AGTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--A-GTTCTTGATAGAGTTAATATATACA---------TATAC------CTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGCATAGAAGTAA-AAA-GA-A-AC-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 2222 1 555555 11 555555555555555 444444 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333333 11111 1 3333 444444444444444444444444 22222 22222 222222 4444444444444 0000000000000000000000000000000000000000 2222222 55555555555555555555555555555555555555555555 222222 111 222222 111111111111111111 1111111111 1111111
lowQualScore : 3 2 1 3 33 6 8888888888888888 3 5555 2 44444 0 0 3 777777 1 1 2 33 0 2 3 3 999999999999999 7 333333 3 0 3 3 4 3 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 55555555 1 11111 1 0 2 2222 0 222222222222222222222222 1 0 0 1 0 8 00000 00000 3 888888 8888888888888 2 2 0 3333333333333333333333333333333333333333 1111111 5 88888888888888888888888888888888888888888888 0 2 999 1 2 555555 777777 4 55 4 4 444 3 4 8888 3 222 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . .. . ................ . .... . ..... . . . ...... . . . .. . . . . ............... . ...... . . . . . . . . . . ... . . .. ... ............................................................................. . .. ........ . ..... . . . .... . ........................ . . . . . . ..... ..... . ...... ............. . . . ........................................ ....... . ............................................ . . ... . . ...... ...... . .. . . ... . . .... . ... ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 2 5 0 2 88 5 2222222222222222 2 8888 5 22222 0 8 2 555555 2 0 5 88 2 5 2 2 333333333333333 3 000000 3 7 2 2 2 2 2 2 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 55555555 0 88888 0 0 5 5555 2 000000000000000000000000 0 2 8 4 8 0 00000 00000 2 888888 5555555555555 5 5 8 2222222222222222222222222222222222222222 7777777 0 77777777777777777777777777777777777777777777 5 0 777 0 5 777777 888888 0 55 0 0 666 9 0 5555 1 000 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTA-ATATATACATA-ACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTA-ATATATAC------CTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCA-GTTGTTGATAGAGTTGGTTTA-ATATATACATATACCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTT-AATG-AATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTA--TATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATTGGTTT-GTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAATA--------ATAGAATACCTCAGAGCCCCCATC-A-T-TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTC------TGCG------TATGTGTTTCCTTAATAAAAGCGTTT----------TA---------------AAGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCTA-------------------TCTAAGTGT--TAGCGGGCG-----G-GCGGGCGG--GCGGG--CTTGTGGGCGT------GTGTGTTTAAATAAACATGCTTAAAAGTAA-AAACAACA-AC-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGTATTAAAGTAC-GAA-------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGTTTAAAATTAA-AAA-AA-GGAC-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : ggatggaataaATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATAC-AAGTTGTTGATAGAGT------------A-AC------CTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTA-TATA-TATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCT--GGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAATACG------ACATAGTACCTCAGAGCCCCTATCAA-AATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTC------TGCG------T------TTC--TAATAGAAA----------------A---------------AC-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAAACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-NNNNNNNNNNTTTAAAAAAGAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG-----------TTGATAGAGTTGGTTTA-ATATATACATAAACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC----------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC--------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAATATG------GCAGTGTACCTCAGAGTCCCCATC-ACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCGTCTGTAT------TTCCTTAATAAAAACGCTT----------TAAAGTAAAAAAAAAATAC-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTTAAA---
gi|3 : TTTAAACAATAACGCTTAAAAGTAA-AGA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTAtacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaacaataacgcttaaaagtaaagaaaaacattggcgtagataacaaccatattttctcagaaattagtagaatgtagccgttaagtgtgtattatatgatattaaacattcaagtttcggagcggttccatgtatcccaatagtacaattaaagtattgttt
gi|4 : gtaaatgtgaccttgaacttcgacctattggtagttttctcgttcttgcgaacgtcacatttttgtttcgtcatgttcgactcaaatgtacttatttgtagctttttctaattcgccgcgggaaaaatttgataaaatgttgatagagttggtttaatatatacataaaccttgctgttacttcagaggctcatttttgtttattacaaacaaagaaaacagacaacaaagtcaaatcctcgatatttgcccttctatataataaggttataaagaatccggttgtaaggaattgtccggtacaggcatgtttttgttaaataactttactgttttaagtatatatgcttaaagagttactgccaatatacttgtaagttatccaaggacaaaacaataaatgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaaaactgaaaacattaggatccatctgattaattgcaatttgttttgttcctgcaataacgttgggcttatccttaacggtgtagctgcaaaatacataaaacactgtacatgacacactacacataccctccctcaacacacacatacacaccggcgtagctacacgaaggctcgccaaggtctgcacttttaccagaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacaaaatatggcagtgtacctcagagtccccatcacaatttctagacctgcaggttaactttaaccaagctaggccactgccaaatacacacacacaccacctacccaaatttgcaggagtggtgggcgacactctcctctacgtctagtttgtagtactgggagtgaaactccattatgattcactctttaatacatcttataatttagtcttaagtttcttgtgtgtctgcgtctgtatttccttaataaaaacgctttaaagtaaaaaaaaaatactattggagtaaatagtaatcatacccctcccccgtaaaactcactagaatgcatgatttgatcctttacgtcttgactcgcagtggactaggtttgatactcgttcgagattcgcttttaaatacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCATC-A-AATGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTAAAGTAAAATA---------------AC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTT-AA---ATAT-A--------TCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGCTAAAAAGTAA-AAT-TA-A-AC-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTTAAgga
gi|5 : GAGCGTGCATGCGTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGCATAAAAGTAA-AAA-AA-A-AA-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA------TAA--------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-----------TTTAGATAATAATGCTTAACAGTAA-AAA-AA-A-AC-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAgca
gi|7 : ATACGCTTGGGAGATTCGCTTTT-AA---ATAC-A--------TCGAAGTGT----------------------GCGT--GCGTATGCG----------CGTGAGTGTGTTTAAATAATAACGCTTTAAAGTAATAAA-GA-A-AC-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTT-AGTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--A-GTTCTTGATAGAGTTAATATATACATATAC------CTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGCATAGAAGTAA-AAA-GA-A-AC-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 2222 22222 222 11 555555555555555 444444 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333333 11111 1 3333 444444444444444444444444 22222 22222 222222 4444444444444 0000000000000000000000000000000000000000 2222222 55555555555555555555555555555555555555555555 222222 111 222222 111111111111111111 1111111111 1111111
lowQualScore : 3 2 1 3 33 6 8888888888888888 3 5555 2 00000 111 1 1 2 33 0 2 3 3 999999999999999 7 333333 3 0 3 3 4 3 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 55555555 1 11111 1 0 2 2222 0 222222222222222222222222 1 0 0 1 0 8 00000 00000 3 888888 8888888888888 2 2 0 3333333333333333333333333333333333333333 1111111 5 88888888888888888888888888888888888888888888 0 2 999 1 2 555555 777777 4 55 4 4 444 3 4 8888 3 222 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . .. . ................ . .... . ..... ... . . . .. . . . . ............... . ...... . . . . . . . . . . ... . . .. ... ............................................................................. . .. ........ . ..... . . . .... . ........................ . . . . . . ..... ..... . ...... ............. . . . ........................................ ....... . ............................................ . . ... . . ...... ...... . .. . . ... . . .... . ... ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 2 5 0 2 88 5 2222222222222222 2 8888 5 55555 000 2 0 5 88 2 5 2 2 333333333333333 3 000000 3 7 2 2 2 2 2 2 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 55555555 0 88888 0 0 5 5555 2 000000000000000000000000 0 2 8 4 8 0 00000 00000 2 888888 5555555555555 5 5 8 2222222222222222222222222222222222222222 7777777 0 77777777777777777777777777777777777777777777 5 0 777 0 5 777777 888888 0 55 0 0 666 9 0 5555 1 000 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATA-CCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATA-A-CCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCA-GTTGTTGATAGAGTTGGTTTAATATATACATATA-CCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTT-AATG-AATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTA--TATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATTGGTTT-GTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAATA--------ATAGAATACCTCAGAGCCCCCATC-A-T-TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTC------TGCG------TATGTGTTTCCTTAATAAAAGCGTTT----------TA---------------AAGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCTA-------------------TCTAAGTGT--TAGCGGGCG-----G-GCGGGCGG--GCGGG--CTTGTGGGCGT------GTGTGTTTAAATAAACATGCTTAAAAGTAA-AAACAACA-AC-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGTATTAAAGTAC-GAA-------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGTTTAAAATTAA-AAA-AA-GGAC-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : ggatggaataaATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATAC-AAGTTGTTGATAGAGT-----------------A-A-CCTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTA-TATA-TATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCT--GGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAATACG------ACATAGTACCTCAGAGCCCCTATCAA-AATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTC------TGCG------T------TTC--TAATAGAAA----------------A---------------AC-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAAACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-NNNNNNNNNNTTTAAAAAAGAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG-----------TTGATAGAGTTGGTTTAATATATACATA-AACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC----------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC--------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAATATG------GCAGTGTACCTCAGAGTCCCCATC-ACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCGTCTGTAT------TTCCTTAATAAAAACGCTT----------TAAAGTAAAAAAAAAATAC-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTTAAA---
gi|3 : TTTAAACAATAACGCTTAAAAGTAA-AGA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTAtacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaacaataacgcttaaaagtaaagaaaaacattggcgtagataacaaccatattttctcagaaattagtagaatgtagccgttaagtgtgtattatatgatattaaacattcaagtttcggagcggttccatgtatcccaatagtacaattaaagtattgttt
gi|4 : gtaaatgtgaccttgaacttcgacctattggtagttttctcgttcttgcgaacgtcacatttttgtttcgtcatgttcgactcaaatgtacttatttgtagctttttctaattcgccgcgggaaaaatttgataaaatgttgatagagttggtttaatatatacataaaccttgctgttacttcagaggctcatttttgtttattacaaacaaagaaaacagacaacaaagtcaaatcctcgatatttgcccttctatataataaggttataaagaatccggttgtaaggaattgtccggtacaggcatgtttttgttaaataactttactgttttaagtatatatgcttaaagagttactgccaatatacttgtaagttatccaaggacaaaacaataaatgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaaaactgaaaacattaggatccatctgattaattgcaatttgttttgttcctgcaataacgttgggcttatccttaacggtgtagctgcaaaatacataaaacactgtacatgacacactacacataccctccctcaacacacacatacacaccggcgtagctacacgaaggctcgccaaggtctgcacttttaccagaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacaaaatatggcagtgtacctcagagtccccatcacaatttctagacctgcaggttaactttaaccaagctaggccactgccaaatacacacacacaccacctacccaaatttgcaggagtggtgggcgacactctcctctacgtctagtttgtagtactgggagtgaaactccattatgattcactctttaatacatcttataatttagtcttaagtttcttgtgtgtctgcgtctgtatttccttaataaaaacgctttaaagtaaaaaaaaaatactattggagtaaatagtaatcatacccctcccccgtaaaactcactagaatgcatgatttgatcctttacgtcttgactcgcagtggactaggtttgatactcgttcgagattcgcttttaaatacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCATC-A-AATGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTAAAGTAAAATA---------------AC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTT-AA---ATAT-A--------TCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGCTAAAAAGTAA-AAT-TA-A-AC-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTTAAgga
gi|5 : GAGCGTGCATGCGTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGCATAAAAGTAA-AAA-AA-A-AA-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA------TAA--------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-----------TTTAGATAATAATGCTTAACAGTAA-AAA-AA-A-AC-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAgca
gi|7 : ATACGCTTGGGAGATTCGCTTTT-AA---ATAC-A--------TCGAAGTGT----------------------GCGT--GCGTATGCG----------CGTGAGTGTGTTTAAATAATAACGCTTTAAAGTAATAAA-GA-A-AC-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTT-AGTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--A-GTTCTTGATAGAG-----TTAATATATACATATA-CCTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGCATAGAAGTAA-AAA-GA-A-AC-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 2222 22222 11 555555555555555 444444 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333333 11111 1 3333 444444444444444444444444 22222 22222 222222 4444444444444 0000000000000000000000000000000000000000 2222222 55555555555555555555555555555555555555555555 222222 111 222222 111111111111111111 1111111111 1111111
lowQualScore : 3 2 1 3 33 6 8888888888888888 3 5555 2 00000 9 1 1 2 33 0 2 3 3 999999999999999 7 333333 3 0 3 3 4 3 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 55555555 1 11111 1 0 2 2222 0 222222222222222222222222 1 0 0 1 0 8 00000 00000 3 888888 8888888888888 2 2 0 3333333333333333333333333333333333333333 1111111 5 88888888888888888888888888888888888888888888 0 2 999 1 2 555555 777777 4 55 4 4 444 3 4 8888 3 222 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . .. . ................ . .... . ..... . . . . .. . . . . ............... . ...... . . . . . . . . . . ... . . .. ... ............................................................................. . .. ........ . ..... . . . .... . ........................ . . . . . . ..... ..... . ...... ............. . . . ........................................ ....... . ............................................ . . ... . . ...... ...... . .. . . ... . . .... . ... ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 2 5 0 2 88 5 2222222222222222 2 8888 5 55555 8 2 0 5 88 2 5 2 2 333333333333333 3 000000 3 7 2 2 2 2 2 2 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 55555555 0 88888 0 0 5 5555 2 000000000000000000000000 0 2 8 4 8 0 00000 00000 2 888888 5555555555555 5 5 8 2222222222222222222222222222222222222222 7777777 0 77777777777777777777777777777777777777777777 5 0 777 0 5 777777 888888 0 55 0 0 666 9 0 5555 1 000 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCA-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTT-AATG-AATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTA--TATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATTGGTTT-GTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAATA--------ATAGAATACCTCAGAGCCCCCATC-A-T-TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTC------TGCG------TATGTGTTTCCTTAATAAAAGCGTTT----------TA---------------AAGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCTA-------------------TCTAAGTGT--TAGCGGGCG-----G-GCGGGCGG--GCGGG--CTTGTGGGCGT------GTGTGTTTAAATAAACATGCTTAAAAGTAA-AAACAACA-AC-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGTATTAAAGTAC-GAA-------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGTTTAAAATTAA-AAA-AA-GGAC-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : ggatggaataaATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATAC-AAGTTGTTGATAGAGT-----------------A-ACCTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTA-TATA-TATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCT--GGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAATACG------ACATAGTACCTCAGAGCCCCTATCAA-AATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTC------TGCG------T------TTC--TAATAGAAA----------------A---------------AC-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAAACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-NNNNNNNNNNTTTAAAAAAGAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG-----------TTGATAGAGTTGGTTTAATATATACATAAACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC----------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC--------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAATATG------GCAGTGTACCTCAGAGTCCCCATC-ACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCGTCTGTAT------TTCCTTAATAAAAACGCTT----------TAAAGTAAAAAAAAAATAC-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTTAAA---
gi|3 : TTTAAACAATAACGCTTAAAAGTAA-AGA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTAtacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaacaataacgcttaaaagtaaagaaaaacattggcgtagataacaaccatattttctcagaaattagtagaatgtagccgttaagtgtgtattatatgatattaaacattcaagtttcggagcggttccatgtatcccaatagtacaattaaagtattgttt
gi|4 : gtaaatgtgaccttgaacttcgacctattggtagttttctcgttcttgcgaacgtcacatttttgtttcgtcatgttcgactcaaatgtacttatttgtagctttttctaattcgccgcgggaaaaatttgataaaatgttgatagagttggtttaatatatacataaaccttgctgttacttcagaggctcatttttgtttattacaaacaaagaaaacagacaacaaagtcaaatcctcgatatttgcccttctatataataaggttataaagaatccggttgtaaggaattgtccggtacaggcatgtttttgttaaataactttactgttttaagtatatatgcttaaagagttactgccaatatacttgtaagttatccaaggacaaaacaataaatgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaaaactgaaaacattaggatccatctgattaattgcaatttgttttgttcctgcaataacgttgggcttatccttaacggtgtagctgcaaaatacataaaacactgtacatgacacactacacataccctccctcaacacacacatacacaccggcgtagctacacgaaggctcgccaaggtctgcacttttaccagaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacaaaatatggcagtgtacctcagagtccccatcacaatttctagacctgcaggttaactttaaccaagctaggccactgccaaatacacacacacaccacctacccaaatttgcaggagtggtgggcgacactctcctctacgtctagtttgtagtactgggagtgaaactccattatgattcactctttaatacatcttataatttagtcttaagtttcttgtgtgtctgcgtctgtatttccttaataaaaacgctttaaagtaaaaaaaaaatactattggagtaaatagtaatcatacccctcccccgtaaaactcactagaatgcatgatttgatcctttacgtcttgactcgcagtggactaggtttgatactcgttcgagattcgcttttaaatacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCATC-A-AATGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTAAAGTAAAATA---------------AC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTT-AA---ATAT-A--------TCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGCTAAAAAGTAA-AAT-TA-A-AC-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTTAAgga
gi|5 : GAGCGTGCATGCGTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGCATAAAAGTAA-AAA-AA-A-AA-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA------TAA--------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-----------TTTAGATAATAATGCTTAACAGTAA-AAA-AA-A-AC-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAgca
gi|7 : ATACGCTTGGGAGATTCGCTTTT-AA---ATAC-A--------TCGAAGTGT----------------------GCGT--GCGTATGCG----------CGTGAGTGTGTTTAAATAATAACGCTTTAAAGTAATAAA-GA-A-AC-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTT-AGTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--A-GTTCTTGATAGAG-----TTAATATATACATATACCTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGCATAGAAGTAA-AAA-GA-A-AC-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 2222 22222 11 555555555555555 444444 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333333 11111 1 3333 444444444444444444444444 22222 22222 222222 4444444444444 0000000000000000000000000000000000000000 2222222 55555555555555555555555555555555555555555555 222222 111 222222 111111111111111111 1111111111 1111111
lowQualScore : 3 2 1 3 33 6 8888888888888888 3 5555 2 00000 9 1 1 2 33 0 2 3 3 999999999999999 7 333333 3 0 3 3 4 3 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 55555555 1 11111 1 0 2 2222 0 222222222222222222222222 1 0 0 1 0 8 00000 00000 3 888888 8888888888888 2 2 0 3333333333333333333333333333333333333333 1111111 5 88888888888888888888888888888888888888888888 0 2 999 1 2 555555 777777 4 55 4 4 444 3 4 8888 3 222 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . .. . ................ . .... . ..... . . . . .. . . . . ............... . ...... . . . . . . . . . . ... . . .. ... ............................................................................. . .. ........ . ..... . . . .... . ........................ . . . . . . ..... ..... . ...... ............. . . . ........................................ ....... . ............................................ . . ... . . ...... ...... . .. . . ... . . .... . ... ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 2 5 0 2 88 5 2222222222222222 2 8888 5 55555 8 2 0 5 88 2 5 2 2 333333333333333 3 000000 3 7 2 2 2 2 2 2 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 55555555 0 88888 0 0 5 5555 2 000000000000000000000000 0 2 8 4 8 0 00000 00000 2 888888 5555555555555 5 5 8 2222222222222222222222222222222222222222 7777777 0 77777777777777777777777777777777777777777777 5 0 777 0 5 777777 888888 0 55 0 0 666 9 0 5555 1 000 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCA-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTT-AATG-AATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTA--TATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATTGGTTT-GTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAATA--------ATAGAATACCTCAGAGCCCCCATC-A-T-TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTC------TGCG------TATGTGTTTCCTTAATAAAAGCGTTT----------TA---------------AAGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCTA-------------------TCTAAGTGT--TAGCGGGCG-----G-GCGGGCGG--GCGGG--CTTGTGGGCGT------GTGTGTTTAAATAAACATGCTTAAAAGTAA-AAACAACA-AC-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGTATTAAAGTAC-GAA-------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGTTTAAAATTAA-AAA-AA-GGAC-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : ggatggaataaATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATAC-AAGTTGTTGATAGAGT-----------------A-ACCTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTA-TATA-TATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCT--GGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAATACG------ACATAGTACCTCAGAGCCCCTATCAA-AATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTC------TGCG------T------TTC--TAATAGAAA----------------A---------------AC-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAAACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-NNNNNNNNNNTTTAAAAAAGAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG-----------TTGATAGAGTTGGTTTAATATATACATAAACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC----------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC--------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAATATG------GCAGTGTACCTCAGAGTCCCCATC-ACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCGTCTGTAT------TTCCTTAATAAAAACGCTT----------TAAAGTAAAAAAAAAATAC-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTTAAA---
gi|3 : TTTAAACAATAACGCTTAAAAGTAA-AGA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTAtacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaacaataacgcttaaaagtaaagaaaaacattggcgtagataacaaccatattttctcagaaattagtagaatgtagccgttaagtgtgtattatatgatattaaacattcaagtttcggagcggttccatgtatcccaatagtacaattaaagtattgttt
gi|4 : gtaaatgtgaccttgaacttcgacctattggtagttttctcgttcttgcgaacgtcacatttttgtttcgtcatgttcgactcaaatgtacttatttgtagctttttctaattcgccgcgggaaaaatttgataaaatgttgatagagttggtttaatatatacataaaccttgctgttacttcagaggctcatttttgtttattacaaacaaagaaaacagacaacaaagtcaaatcctcgatatttgcccttctatataataaggttataaagaatccggttgtaaggaattgtccggtacaggcatgtttttgttaaataactttactgttttaagtatatatgcttaaagagttactgccaatatacttgtaagttatccaaggacaaaacaataaatgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaaaactgaaaacattaggatccatctgattaattgcaatttgttttgttcctgcaataacgttgggcttatccttaacggtgtagctgcaaaatacataaaacactgtacatgacacactacacataccctccctcaacacacacatacacaccggcgtagctacacgaaggctcgccaaggtctgcacttttaccagaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacaaaatatggcagtgtacctcagagtccccatcacaatttctagacctgcaggttaactttaaccaagctaggccactgccaaatacacacacacaccacctacccaaatttgcaggagtggtgggcgacactctcctctacgtctagtttgtagtactgggagtgaaactccattatgattcactctttaatacatcttataatttagtcttaagtttcttgtgtgtctgcgtctgtatttccttaataaaaacgctttaaagtaaaaaaaaaatactattggagtaaatagtaatcatacccctcccccgtaaaactcactagaatgcatgatttgatcctttacgtcttgactcgcagtggactaggtttgatactcgttcgagattcgcttttaaatacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCATC-A-AATGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTAAAGTAAAATA---------------AC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTT-AA---ATAT-A--------TCGAAGTGTATTTGTGAGTGTG--TGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGCTAAAAAGTAA-AAT-TA-A-AC-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTTAAgga
gi|5 : GAGCGTGCATGCGTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGCATAAAAGTAA-AAA-AA-A-AA-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA------TAA--------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN--NNNNNNNNNNNNNNNNNN-----------TTTAGATAATAATGCTTAACAGTAA-AAA-AA-A-AC-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAgca
gi|7 : ATACGCTTGGGAGATTCGCTTTT-AA---ATAC-A--------TCGAAGTGT----------------------GCGT--GCGTATGCG----------CGTGAGTGTGTTTAAATAATAACGCTTTAAAGTAATAAA-GA-A-AC-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTT-AGTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--A-GTTCTTGATAGAG-----TTAATATATACATATACCTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGCATAGAAGTAA-AAA-GA-A-AC-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA
blockSeqs : A G C A TT C ACGTATA A CAA G TTGGT A T G C . G A A GTTTATATATATA T AGCT . A A T T T T C ATA T G . CCC NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N TC CACCTATA T AAAA G G C AACT CAAATACACACACA A A T CATGG TCATC A TTCTTG TCTGTAT C C TAAAGTAAAAAAAAAATACTAT AGTGCAT A AACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N CCA N N NNNNNN GCGTGT T A . G TG A A TATA G GGT GTA T T TCCAA A T A CT CAGGTG C G GGG TA . G A GC A AAA . C A CTCCA ATAAATT C C A TG T TTATT A AAAA C T
blockSeqs : A G C A . C ACATAGA A A C T T T T C . G A A . . . . A A T T T T T . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T C CG G ACAA T . C TACT TATGCACA C T . . . A . T C C TAAAGTAAAATAACTAT . A ATATATCGAAGTGTATTTGTGAGTGTGTGC C N A T TGTGTG TCGTGT . A . . AA G . . . AAG . . . CAAG . . C . . T G G . . . . TA A . . . . . . . T T GT A . . . . .
blockSeqs : . C G A . . A . . . . . C T . . . . . . . C T C . A . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A T TG T AAA G . C G TATACA C T . . . A . T . . AACTAT . A TAANNNNNNNNNNNNNNNNNNNNNNNNN C C C T TGCGTT NNNNN . A . . A G . . . GAT . . . TAAA . . C . . A T G . . . . . T . . . . . . . G A CG A . . . . .
blockSeqs : C . . . . . T . . . . A ATACATCGAAGTGT N N N N NNNNNN CGTGA . T . . A A . . . AAG . . . CAAG . . C . . T G G . . . . . A . . . . . . . A A CT T . . . . .
blockSeqs : . . . . . . . . T T T . . . A . . A A . . . AAG . . . CAAG . . T . . G C G . . . . . A . . . . . . . T A AT T . . . . .
blockSeqs : . . A . . A G . . . AAG . . . CATG . . C . . T A G . . . . . A . . . . . . . T A CG A . . . . .
blockSeqs : . G . . T G . . . TG . . . T . . C . . A G G . . . . . A . . . . . . . T A CT A . . . . .
blockSeqs : . G . . G A . . . AG . . . T . . C . . T A G . . . . . A . . . . . . . T A CT T . . . . .
blockSeqs : . . . . A . . . . GA . . . . . . A . . A G A . . . . . A . . . . . . . T A CG T . . . . .
blockSeqs : . AC . . . . . . T . . A G G . . . . . T . . . . . . . T A AT T . . . . .
blockSeqs : . AG . . . . . . G . . T G C . . . . . A . . . . . . . T . . . . . . . .
blockSeqs : . GG . . . . . . . . . A A G . . . . . A . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : ** ATACATCGAAGTGTNNNNNNNNNNNNNNNN************** GCGTGN A* ****************** **********
originalCons : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA---ATATAA--------TCGAAGTGTATTNGCGAGCGTG--TGCGCGCGCGC--GCGNGTGCGTGCGTGCGT-CGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
finalCons : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTC------TGCG------T------TTCCTTAATAAAAGCGTTT----------TA---------------AC-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAAATACATCGAAGTGTNNNNNNNNNNNNNNNN--------------GCGCGCGC--GCGNGTGCGTGCGTGCGTGCGTGNGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAAA-A-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 11 5555555555555555 2222 22222 11 555555555555555 444444 1 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 33333333 11111 1 3333 444444444444444444444444 22222 22222 5555555555555555555555 11111111111111111111111111111111111111 2222222 222222222222222222222222222222222222222222 111 222222 111111111111111111 1111111111 1111111
lowQualScore : 3 2 1 3 33 6 8888888888888888 3 5555 2 00000 9 1 1 2 33 0 2 3 3 999999999999999 7 333333 3 0 3 3 4 3 0 1 3 1 111 6 6 99 444 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 00 55555555 1 11111 1 0 2 2222 0 222222222222222222222222 1 0 0 1 0 8 00000 00000 3 1111111111111111111111 2 2 0 55555555555555555555555555555555555555 1111111 5 555555555555555555555555555555555555555555 0 2 999 1 2 5555555555 88 4 55 4 4 444 3 4 8888 3 222 555 3 3 888888 2 2 3 33 777777 2 2 444 33 999999999999999999 2 2 77 2 444 1111111111 2 2 77777 0000000 0 2 2 1 22 1 77777 2 5555 2 3
lowQualScore : . . . . .. . ................ . .... . ..... . . . . .. . . . . ............... . ...... . . . . . . . . . . ... . . .. ... ............................................................................. . .. ........ . ..... . . . .... . ........................ . . . . . . ..... ..... . ...................... . . . ...................................... ....... . .......................................... . . ... . . .......... .. . .. . . ... . . .... . ... ... . . ...... . . . .. ...... . . ... .. .................. . . .. . ... .......... . . ..... ....... . . . . .. . ..... . .... . .
lowQualScore : 2 5 0 2 88 5 2222222222222222 2 8888 5 55555 8 2 0 5 88 2 5 2 2 333333333333333 3 000000 3 7 2 2 2 2 2 2 2 0 777 7 7 22 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 22 55555555 0 88888 0 0 5 5555 2 000000000000000000000000 0 2 8 4 8 0 00000 00000 2 2222222222222222222222 5 5 8 22222222222222222222222222222222222222 7777777 0 777777777777777777777777777777777777777777 5 0 777 0 5 7777777777 00 0 55 0 0 666 9 0 5555 1 000 444 1 1 000000 9 9 0 99 777777 0 6 111 77 777777777777777777 7 7 33 6 777 7777777777 7 9 11111 0000000 9 7 1 6 88 7 77777 9 7777 7 1
consensus : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCG------T------TTCCTTAATAAAAGCGTTTTA---------------A----------C-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAAATACAT------------CGAAGTGTAANCGNGAGTGTGTGCGCGCGCGC--GCGNGTGCGTGCGTGCGTGCGTGTGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
Reference ( family-2833 ) : ATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTCGTCTCGTCATGTTNAACTCATATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGGAAA--------ACGTA-G-TTTGATAAAATGATAC-A-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTTTCTGTTACTTCAGAGGCTCATTTTTGTTNATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGTTTTTGTTAAATAACTTTACGTT-A-TG-A-TATGCTGTTTTAAGTATATATACTTAAAGAGTTACTGTA--T--GGCAATATACTT-GTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGACTGAAAACATTAGGATCCATCTGATTAATTGCAATTCGTTTTGTTCCTGCAATATCGTAGGGCTTATCCTTAACGGTGTAGCTGCAAGATACATAAAACACTGTACATGGCACACTGTACATGCCCTCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------TTTANAAA-CAAAATACG------ACANAGTACCTCAGAGCCCCCATC-A-AATNTCTTA-ACCTGCAGGTT-ACTTTGACCAAGCTAGGCCACTGC--------CAT--ACA--------CACCACCTACCNAAATTTGCAGGAGTGGTGGGGGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCG------T------TTCCTTAATAAAAGCGTTTTA---------------A----------C-TA----T---TGGAGTAAATACTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAAATACAT------------CGAAGTGTNNNNNNNNNNNNNNNNGCGCGCGC--GCGNGTGCGTGCGTGCGTGCGTGNGTGTGTTTAAATAATAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTAAGAAATGAGTAGAATT-CAGCAGTTAAGTGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CCAATA--GCGGGAG------TAGAGTAGNATTACCGCCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTACGCCCATT-AAAGTATCGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|1 : ATTACACTCAATCAACTTGTAAATATGACCTTAAACCTCGACCTATTGATAGTTTTCTCTTTCTTGCCAACGTCACATTTTCGTCTCATCATGTTAAACTCAT--GTACTTATTTGTAGC--TTTTACTAATTCGTGGTGGGGGGGGGGGGGGGACATA-GCTTTGATAAAATGATACCA-GTTGTTGATAGAGTTGGTTTAATATATACATATACCTATCTGTTACTTCAGAGGCTCATTTTTGTTAATTACAAGCAAAGAAAACAGAGTCAACAAAGTCAATTCCTCGATATTTGACCTTATATATAAAAATAAGGTTATACAGAATCCGGTTATAAGGAATTGTCAGATACAGGCATGCTTTTGTAAAATAACTTTACGTT-AATG-AATATGCTGTTTTAAGTGAATATACTTAAAGAGTTACTGTA--TATGGCAATAAACTTAGTAAGTTATCCAAGGACGAAACAATAACTGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAGATTGAAAACATTAAGATCCACCTGATCAATTGGAATTGGTTT-GTTCCTGCAATATTTTAGGGCTTATCTTTAACTGTGTAGCTGCACGATACAAAAAACACTGTACATGGCACACTGTACATGCCATCCCCCAACACACACATACACACCGGCGTAGCTACACGAAGGCACTGCTGAC---CAAG-GCCTGCACTT-TCCCTAGGAAAAAAT---AAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNAA-AAAAATA--------ATAGAATACCTCAGAGCCCCCATC-A-T-TTTTTTA-A--------------TTGACCAATCTAGGGTACTGG--------CAT--ACATGTACAAACATCACCTACCAAAATTTGCAGGAGTGTTGGGGGAC--TCTTCATTACGTCTTAGTTT-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTTATG-TTTAGACTTAAATTTTTTGTGTGTCT------GCG------TATGTGTTTCCTTAATAAAAGCGTTTTA---------------A----------AGTAAAGATAAATGGAGTAAATACTAATCATATCCCTCCCCCGTAAAACTCACTAGAATTCATGATTTAATTATTTACGTCTTGACTCGC-------GGTGTTCTGAGTTTGATATTCGTTGGAGATTCGCTTCTA-------T------------CTAAGTGTTAGCGG----------GCGGGCGG--GCGGG--CGGGCTTGTGGGCGTG--TGTGTTTAAATAAACATGCTTAAAAGTAA-AAACAACA-AC-A-TTGGCGTTTA-TAGCAACCATAATTT----CTAAGAAATGAGTGGAATT-CAGCAATTA-GTGT---TTA---GATATCAAACATT--CAAGTTTT-GGAGCGGTTCCCCGTATC-CCAATA--GCGGAGG------TAGAGTAGTATTACTACTACCAGC--AGGAGAGG--GATACACCCTTCCCACACACTAC-CCC-CCCCC--CCCCCCCCC---CCCCCCCTCTCCTCGGTTGCCT-CTCT-GC-----A-------ACAATAGAAGTGCTCAGACACCAATT-AAAGTATCGTTTACCTACAAAATAATTATAAATACGCTA-----AGTT-TCT----C-A-AATGGCAAGCCATTCCTCACA-AAA
gi|10 : ggatacctgacctgttgaagtgacattaaaccaAATAGCGTATTAAAGTAC-GAA-------CTG-TTAAAGTAAA-TAATA----TATTTT----CTAAGATATGAGTAGAATT-CAGTAGTTT-GTGT---TTA-A-GATATCAAACATT------TTCC-GCGGCAGTTCCCCGTATC-CAAATA--GCGGGAG------TAGAGTAGCATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-TCT-TCCCA--CACTCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATTATTGA--------------CATTCAGAGTATCG-TTACCTATAAAATATGTATAA---------------TC-ACT----C-A-AAAGGCAAGCCGTTCCTTTTA-AAA
gi|11 : TAGAATT-CAGCAGTTA-GTGT---TTA-A-GATAACAAACATT--CAAGTTTA-GGAGCGGTTCCCCGTATC-CCAATA--GTGGAAG------TAGAATAGTATTACCGCTATCAGC--GGGAAAGG--GAC------------------AC-CCT-TCCTA--CACACTACC---AACA----------GGTTGCCT-ATCT-CC-----A-------ACAATTGAAGTGCTCATACACCAAAT-AAAGTATCGCTTACCTTCAAAATAGTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCATTCCTTTTA-AAAggaa
gi|12 : aGTTTAAAATTAA-AAA-AA-GGAC-A-TTGGTGTA-------AACCCTATTTTTATACCAAATATTGAGTAGAATG-CAGCAGTTGGTTTT---TTA-A-GATATCAAACTTTTCCAA----C-G--GCGA--CCCCCTACCTCCA--A--GAGGGAG------GAGga
gi|12 : tTACCTCCA--AGA--GGGAGGAG--G-----------------------CCTATCCCA--CA-ATTTTT---CCCA----------GGTTGCAT-CTTC-CC-----AATAAATTATAACTGAAGTACTCCTAGACCTATT-GAAGTATTTTTTATATACAgcctatcccacaatttttcccaggttgcatcttcccaataaattataactgaagtactcctagacctattgaagtattttttatataca
gi|13 : tgtttaaaattaaaaaaaggacattggtgtaaaccctatttttataccaaatattgagtagaatgcagcagttggttttttaagatatcaaacttttccaacggcgacccccTTTC-GGAGCGGTTTCTC---T------TA--GCAGGAG------TAGAGTAGAATTACCGCCACCAGC--GGGAAAGG--GAC------------------AC-CCT-CGCCA--CACGCTACC---CACA----------GGTTGCCT-CTCC-CC-----A-------ATATTTGAAGTGCTCTAACGCCCATT-AAATAATCAGTTA
gi|13 : T----TAA-AAAGGCAAGCCGTTCCTTTTA-AAAaaaaggcaagccgttccttttaaaagaaa
gi|14 : tttcggagcggtttctcttagcaggagtagagtagaattaccgccaccagcgggaaagggacaccctcgccacacgctacccacaggttgcctctccccaatatttgaagtgctctaacgcccattaaataatcagATG-CAGTATTTGA-TGT---TTA-A-GATGTAAAACATT------TTTA-GGAG-AGTCCCTCCTACC-C--ATCCTGCGGAAA------TTG-GTAGTA--AC--CCTCTAAC-----ACAGGTAGAT------------------ACGTCG-TCTAA--CATTCT-TC---CCCA----------GGTTGACC-CCCgaaa
gi|15 : aagtaaatttatccaaaatatcacttttAGGAGTGCCCCTACCAGC--GGGAGAAG--AGC------------------AC-CCT-ACCCA--CACACCACC---CACA----------GATGGTCT-CTCC-CA-----A-------ATAATT-AAGTGCTGTTGCGCCCATT-GAAGTATCTATGACCT---AGGT-----TAACAAC---A-----AGTT-ACG----GAA-GAAGGCAAACCGTTCCTTTTA-t
gi|16 : cGTATTACC---ACCAGC---------------------------------AT-CCT-TTCCGGCCACACC-CCAAACCCA----------GAATGCCT-CTTC-CA-----A-------ATAATTGAAATGCTCTTACACCCATT-G----ATCATTTACT--CAAGATgta
gi|16 : TT-ACT----CAA-GATGGCAA-TCGTTCCTTTTA-AAAggcaatcgttccttttaaaagg
gi|17 : gtattaccaccagcatcctttccggccacaccccaaacccagaatgcctcttccaaataattgaaatgctcttacacccattgatcatACTCTCTACTACGTTTTGCCTCTGTACATGGGTACTTGAAGTTAGTCTCGGTTGGGATTCACTTTTCATCTTAATACATCTTATAgg
gi|18 : ggatggaataaATT-AAAGTATTGTTTACCTACAAAATACGTATAATAACGCTATTATTAGTT-ATT----AAA-CAAGGCAAGTCGTTCCTTTTA-AAAC
gi|19 : acaCAGGAG------TAGAGTAAAATTACCACCACCAGT--GGGAGAGG--GAC------------------AC-CCT-TCTTA--CACACTACC---CGCA----------AGTTGCCTCCTCC-CC-----ga
gi|2 : cATTACACTCAATCAACTTGTAAATGTGACCTTGAACTTCGACCTATCGGTAGTTTTCTTGTTCTTGCGAACGTCCCGTTTTCGTCTCGTCATGTTCAACTCATATGTAATTATTTGTGGC--TTTTTCTAATTTGCCGCGGGAAAA--------ACGTATA-TTTGATAAAATGATAC-AAGTTGTTGATAGAGT-----------------A-ACCTTTCTGTTATTTCAGAGGCTCTTTTTTGCTGATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCATCGATATTT-CCCTTCTACATAAAAATAAGGTTATAAAGAATCCGGTTATAAGGAACTGTCAGAAACAGGCATGTTTTTGTTAAATAACTTTACGTTTA-TATA-TATACTGTTT-AATTATATATACTTTAATAGTTACTATAGCT--GGCAATATACTT-GTAAATTATCCAAGGACAAAACAATAACTGCAGAGTTTGATGTAATTTAATACAATGGGATTACAACCAGTCTTCCTCGTCACAGTTAAAACTGAAAATATTAGGATCCATCTAATTAATTGCAATCTGTTTTGTTCCTGCAATATCGTAGGGCTTACCTTTAACGGTGTAGCTGCAATATACATAAAACACTGGTCATGGCACATTGTACATGCCCTCCCTTAACACACACATACACACCGGCATAGCTACACGAAGGCACTGCAGCC---CAAG-GCCTGCACTT-TTCCCAG--AAAAAT---GNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNAAATCAAAATACG------ACATAGTACCTCAGAGCCCCTATCAA-AATGTCTTA-ACCTGCAGGTT-G--TTGACCAAGCTAGGCCACTGC--------TAT--ACA--------CACCACCTATCAAAATGTTCAGGAGTGGTGAGGGACACTGTCCTCTACGTCTTGGCTC-GTA-----GTACTGGGAGTGAAACTCGATTAAGATTCACTTT-----TTAATACATCTAATGATTAAGTCTTAAGTTTCTTTTGTGTCT------GCG------T------TTC--TAATAGAAA------A---------------A----------C-TA----T---TAGAGTTAATACTAATCATACCCCTCCCCCGTAAAATTCACTAGAATGCATGATTTGATCATTTACGTCTTGACTCGC-------AGTGTACTAGGTTTGATACTCGTTGGAGATTCACTTGTAAAA-ACATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAAAGAACGCTTAAAAGTAA-AAA-AA-A-AC-A-TTGGC-TAGA-TAACAACCATATTTT----CTAAGAAATTAGTAGAATG-TAGCCGTTAAGAGT---TTA-A-CATATCAAACTTT--TAAATTTC-GGAGTGGTTTCCCGTACC-CCAAAA--GCGGAAG------TAGAGTAGTATTACCGCTACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCG--CACACTACC---CCCA----------GGTTGCCT-CTCT-GC-----A-------ACAACTGAAGTGCTCTTACACGTATT-AAAGTATTGTTTACCTACAAAATACTTATAATTACGCTA-----AGTT-ACT----CAA-AAAGGCAAGCCGTTCCTTTTA-AAAC
gi|20 : ACGCACACACTGATATAACTACGTATAGGCACTGTAGACATACGAGTGCCTGCTCTT-CTCCCAG--ACAAAT---
gi|21 : atgccgccctCACCAATT-AAAGTATCGTTTACCTACAACATAATTATAATTATGTTA-----AGTT-ACT----CAA-AAGGGCA
gi|22 : AATTGCAGTATTTGATTTT---TTA-A-GATATC-AATATT--T---TTTCAGGGGAGGCCCCTCGTACC-CTATCA--GCAAGAG------gtaagtgcttcgttt
gi|23 : CGGTGTAGCGACACGTAGGCAATGAAGGC---CCTG-GCCTGCAATTGTTTTCAG--AAAAAaccccc
gi|24 : TG-----AGCT-ACT----CAA-AAAGGCAAGCCGTTCCTTaa
gi|3 : GTAAATGTGACCTTGAACTTCGACCTATTGGTAGTTTTCTCGTTCTTGCGAACGTCACATTTTTGTTTCGTCATGTTCGACTCAAATGTACTTATTTGTAGC--TTTTTCTAATTCGCCGCGGGAAAA--------A-------TTTGATAAAATG-----------TTGATAGAGTTGGTTTAATATATACATAAACCTTGCTGTTACTTCAGAGGCTCATTTTTGTTTATTACAAACAAAGAAAACAGA--CAACAAAGTCAAATCCTCGATATTTGCCCTTCTATATAA---TAAGGTTATAAAGAATCCGGTTGTAAGGAATTGTCCGGTACAGGCATGTTTTTGTTAAATAACTTTAC----------------TGTTTTAAGTATATATGCTTAAAGAGTTACTGC--------CAATATACTT-GTAAGTTATCCAAGGACAAAACAATAAATGCACAGTTTGGTGTAATTTAATAAAATGGGATTACAGCCAGTCTTCCTCGTCACAGAGAAAACTGAAAACATTAGGATCCATCTGATTAATTGCAATTTGTTTTGTTCCTGCAATAACGTTGGGCTTATCCTTAACGGTGTAGCTGCAAAATACATAAAACACTGTACATGACACACTACACATACCCTCCCTCAACACACACATACACACCGGCGTAGCTACACGAAGGCTC-----GC---CAAG-GTCTGCACTT-TTACCAG---AAAAT---AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNTAAA-CAAAATATG------GCAGTGTACCTCAGAGTCCCCATC-ACAATTTCTAG-ACCTGCAGGTTAACTTTAACCAAGCTAGGCCACTGCCAAATACACAC--ACA--------CACCACCTACCCAAATTTGCAGGAGTGGTGGGCGACACTCTCCTCTACGTC-TAGTTT-GTA-----GTACTGGGAGTGAAACTCCATTATGATTCACTCT-----TTAATACATCTTATAATTTAGTCTTAAGTTTCTTGTGTGTCT------GCGTCTGTAT------TTCCTTAATAAAAACGCTTTAAAGTAAAAAAAAAATA----------C-TA----T---TGGAGTAAATAGTAATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGATCCTTTACGTCTTGACTCGC-------AGTGGACTAGGTTTGATACTCGTTCGAGATTCGCTTTT-AAATACAT------------
gi|3 : TTTAAACAATAACGCTTAAAAGTAA-AGA-AA-A-AC-A-TTGGCGTAGA-TAACAACCATATTTT----CTCAGAAATTAGTAGAATG-TAGCCGTTAAGTGTGTATTATATGATATTAAACATT--CAAGTTTC-GGAGCGGTTCCATGTATC-CCAATA--GTACAAT------TAAAGTAttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaacaataacgcttaaaagtaaagaaaaacattggcgtagataacaaccatattttctcagaaattagtagaatgtagccgttaagtgtgtattatatgatattaaacattcaagtttcggagcggttccatgtatcccaatagtacaattaaagtattgttt
gi|4 : gtaaatgtgaccttgaacttcgacctattggtagttttctcgttcttgcgaacgtcacatttttgtttcgtcatgttcgactcaaatgtacttatttgtagctttttctaattcgccgcgggaaaaatttgataaaatgttgatagagttggtttaatatatacataaaccttgctgttacttcagaggctcatttttgtttattacaaacaaagaaaacagacaacaaagtcaaatcctcgatatttgcccttctatataataaggttataaagaatccggttgtaaggaattgtccggtacaggcatgtttttgttaaataactttactgttttaagtatatatgcttaaagagttactgccaatatacttgtaagttatccaaggacaaaacaataaatgcacagtttggtgtaatttaataaaatgggattacagccagtcttcctcgtcacagagaaaactgaaaacattaggatccatctgattaattgcaatttgttttgttcctgcaataacgttgggcttatccttaacggtgtagctgcaaaatacataaaacactgtacatgacacactacacataccctccctcaacacacacatacacaccggcgtagctacacgaaggctcgccaaggtctgcacttttaccagaaaataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacaaaatatggcagtgtacctcagagtccccatcacaatttctagacctgcaggttaactttaaccaagctaggccactgccaaatacacacacacaccacctacccaaatttgcaggagtggtgggcgacactctcctctacgtctagtttgtagtactgggagtgaaactccattatgattcactctttaatacatcttataatttagtcttaagtttcttgtgtgtctgcgtctgtatttccttaataaaaacgctttaaagtaaaaaaaaaatactattggagtaaatagtaatcatacccctcccccgtaaaactcactagaatgcatgatttgatcctttacgtcttgactcgcagtggactaggtttgatactcgttcgagattcgcttttaaatacatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCTTCCGCGTCACAGAGAAGATTGAAA-CATTAGGATCCATCTGATT---TGCAATTCGCTTTGTTCCTGCAATATCGTAGGGCGTATCCTTAACGGTGTAGCTGCGAGATACACGAAACACTGTACATGGCACACTGTACATGCCC----CCAACACACATATACACACCGGTGTAGCTACACGAAGACACTGCAGGC---CAAG-GCCTGCACTT-TTCCCAG--AAAAATCCCAAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAA-TATAGCACACCTATAATATAGTACCTCAGAGCCCTCATC-A-AATGTTCTAGACCTGCAGGTTTACTTTGACCAAGCTAGGCAACTGC--------TATGCACA--------CACCACCTACCCAAATTTGCAAGAGTGGTGGGAGACACTCTCCTCTACGTCTTGGCTC-GTA-----GTACTGGAATTGAAACTCGGTTAAGATTCACATT-----TTAATACATGTTATAATTTAGTCTTAGGTTTCTTGTGTATCTTCTTGTGTG------T------TTCCTTAATAAAAGCGTTTTA---------------AAGTAAAATAAC-TA----T---TGGAGTAAATAATAATCATTCCCCTCCCCCGTAAAACTCACTAGAATGAATGATTTGATCCTTTACGTCTTGATTCGC-------AGTGTACTGGGCTTAATACTCGTTGGAGATTCGCTTTTAAA-TATAT------------CGAAGTGTATTTGTGAGTGTGTGCGCGCGTGC--GTGAGTGCGTGTGTGCGTGCGTGTATGTGTTTAAACAATAACGCTAAAAAGTAA-AAT-TA-A-AC-A-TTGGCGTAAA-TAACAACCATATTTT----CTAAGAAATTAGTAGTATT-CAGCAGTTAAGTGT---TTA-A-GCTATCAAACA---------TTC-GGAGCGGTTCCCCGTATC-CCAACA--GCGGGAG------TAGAGTAGAATTACCACCACTAGCGGGGGAGAGG--GAC------------------AC-CCT-TCTCT--GACACTACC---ACCA----------GGTTGCTT-CTTC-TC-----A-------ATAATTGAAGTACTCTTACGCTCATT-AAAGTATCTTTTACCTACAAAATACGAATAATAACGTTA-----ATTT-ACTAAAAAAA-AAAAGCAAGCCGTTCCTTTTA-AAAttgttt
gi|5 : tataatcaattaaaatctacatgggacactgcagatgcaaCATAATTTGATCCCCTAAGTCTTGACTTGCAGTGCATGGTGTACTGGGTTTGATACTCGTTGCAGAATAACGTTTAAgga
gi|5 : GTGCGTGCCAGCGCGTGTGTGCGTTCGTTCGTGTGTGTGTTTAAATAATAACGCATAAAAGTAA-AAA-AA-A-AA-AATTTGCGTAAA-TAACAACTGTATTTC----CTAAGAAATGAGCAGAATT-CAGCAGT-AAGTGT---TTA-A-GATATCAAACCTT------TTTC-GGAGCGGTTCCCCGTATC-TCAATA--GTGGTAGCAGGTGTAGAGTAGAATTACCGCCACCAGC--AGGAGAGG--GAC------------------AC-TCT-TCCCA--CACACTACC---CCCA----------GGTTGCCT-CCCCACCCTCCAA-------ATAATTGAAGTGCCCATACACCCATT-AAAGTGTCGTTTACCT--AAAATACTTATAATAACGCTA-----AGTT-ACT----CAA-AAAGGTAGGCCGTTCCATTTATAAAtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcgtgcgtgccagcgcgtgtgtgcgttcgttcgtgtgtgtgtttaaataataacgcataaaagtaaaaaaaaaaaatttgcgtaaataacaactgtatttcctaagaaatgagcagaattcagcagtaagtgtttaagatatcaaacctttttcggagcggttccccgtatctcaatagtggtagcaggtgtagagtagaattaccgccaccagcaggagagggacactcttcccacacactacccccaggttgcctccccaccctccaaataattgaagtgcccatacacccattaaagtgtcgtttacctaaaatacttataataacgctaagttactcaaaaaggtaggccgttccatttataaagca
gi|6 : cataatttgatcccctaagtcttgacttgcagtgcatggtgtactgggtttgatactcgttgcagaataacgtttaatctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagcgtgcatgcTAAATACTTATCATACCCCTCCCCCGTAAAACTCACTAGAATGCATGATTTGAACCTTTACGTCTTGACTCGC-------GGTGTACTGGGTTTGATACTCGTTGGAGATTCGCTTTTAAA-------------------------TAANNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGATAATAATGCTTAACAGTAA-AAA-AA-A-AC-T-TTGGCCTAGA-AAACAACCATATTTT----CTAAGAAATGAGTATAATT-CAGCAGTTAC-TGT---TTA-A-GATATCAAACATT--CAAGTTTC-GGAGCGGTTCCCCGTATC-CAAATA--GCGGAAG------TA---TA--ATTACCGCTACCAGC--GGGAGAGG--GAC------------------GC-CCT-TCCCATACACACTTCC---CAAA----------GGTTGCCT-CTCT-CC-----A-------ACAATTGAAGTGCTATTACACCAAAT-AAAGTGTAGTTTACCTACAAAATACTTATTATTACGCTA-----ATTA-ACT----CAA-AAAGGCAAGCCGTTCCATTTA-AAAgca
gi|7 : ATACGCTTGGGAGATTCGCTTTT-AAATACAT------------CGAAGTGT--------------------GCGT--GCGTATGC----------GCGTGAGTGTGTTTAAATAATAACGCTTTAAAGTAATAAA-GA-A-AC-G-TTGGCGTAGA-CTTCAACGATATTTT----CTAAGAAATAAGTAGAATT-CAGCAGTT-AGTGT---TTA-A-GATATCAAACATT--CATGTTTC-GGAGCGGTTCCCAGTATC-CTAATA--GCGGAAG------TAGAGTAGTAGTACCGTCACCAGC--CGGA-AGG--GTC------------------AC-CCT-TCCCC--CACACTACC---CCCA----------GGTTGCCT-CTCC-CC-----A-------ATAATTGAAGTGCTCTTAAGCCCATT-AAAGTATCGATTACCTACAAAATACGTATAGTTACGCTA-----AGTTAACT----AAACAAAGACAAGCGGTTCCTTTTT-AAAg
gi|8 : ATCACACTCAATCAAGTTGTAAATGTG---TCGAACTTTGACCTATTGATATTTTTCTCCTTCTTGAGAACGTCACATTTTCGTCTCGTCATGGTGAACTCATATGTACTTATTTGTAGCTTTTTTTTTAATTCGCCG-GGGGAAA--------ACATA-GATTTTATAAAATAATA--A-GTTCTTGATAGAG-----TTAATATATACATATACCTCTCTGTTACTTCAGAGGCTTATTTTTGTTTATCACAAA-AAAAAACATAGT--CAACAAAATCAAATCTCGGATATTTGCCCTTCTATAT-AAAATAAGGTTgg
gi|9 : ggtaactgtaaactattgaaatgttaaacccTAATAACGCATAGAAGTAA-AAA-GA-A-AC-A-TTTACGCAAAATAACAACCATATTTT----GTAAGAAATGAGTAAAACT-CAGTAGTTG-GTGT---TTA-A-GATATCAAACATT--T---TTTC-GGAGCGGTTCTCCGTATC-CGAATA--GAGGGAG------TAGAGTAGAATTACCACCACCAGC--GGGAGAGG--GAC------------------AC-CCT-TCCCA--CACACTACC---ACCA----------GGTTGCCT-GTCT-CT-----G-------ATAATTAAAGTGATCTAATGCCCATT-GGAGTATCAATTACTTACAAAAAAATTATAATTACGATA-----AGTT-ACT----AAA-AAAGGTAAGCTGTTCCTTTTC-AAA