lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 3333333 1 111 55555555555555555555555 2222 1111111111 11111111111 1 1 1 55555555555555555555555555555555555555555555555555555555555555555555 222222222222222 11111 4444444444444 11 111 1111 111 5555555555 1 22222 1 33 22 1 55 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222 1 1 33333333333333333333333 11 11 1 333333 11 1 111111111111111111111111111111111111111111111111111111111111111111111111 222222 111111 111 22 11
lowQualScore : 1 5 3333333 0 33 4 666 0 77777777777777777777777 3 0000 44 0000000000 44444444444 44 0 1 5 3 3 3 44444444444444444444444444444444444444444444444444444444444444444444 4 6666 44 3 000000000000000 22 5 444444 22 4 0 2 8 77777 6666666666666 5 22 11 555 2 66 0000 5 444 0 5 333 77 5555555555 5 6 5 1 00000 6 5 6 6 22 11 5 55 7 6 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 999999 5 5 2 33333333333333333333333 44 4 55 11 44 5 222222 1 3 22 77 4 5 222222222222222222222222222222222222222222222222222222222222222222222222 2 4 444444 888888 999 3 88 00 88
lowQualScore : . . ....... . .. . ... . ....................... . .... .. .......... ........... .. . . . . . . .................................................................... . .... .. . ............... .. . ...... .. . . . . ..... ............. . .. .. ... . .. .... . ... . . ... .. .......... . . . . ..... . . . . .. .. . .. . . . .............................................................................................................................................................................................................................................................................................................................................. ...... . . . ....................... .. . .. .. .. . ...... . . .. .. . . ........................................................................ . . ...... ...... ... . .. .. ..
lowQualScore : 4 0 9999999 9 77 3 888 1 22222222222222222222222 1 8888 22 2222222222 66666666666 22 5 7 4 3 3 3 00000000000000000000000000000000000000000000000000000000000000000000 0 5555 22 3 666666666666666 44 1 888888 33 4 1 0 6 22222 3333333333333 7 11 99 999 2 66 6666 0 555 4 0 000 99 2222222222 7 7 0 0 00000 0 0 0 0 00 00 0 00 0 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000000 0 0 5 55555555555555555555555 00 0 55 77 22 7 333333 4 2 55 22 4 2 777777777777777777777777777777777777777777777777777777777777777777777777 2 0 888888 222222 333 7 00 77 33
consensus : AATACAATTGTGAGAATTATC----T-TAAATGTTA--TTGTTAATGTTCAAAACTG-GCGAGTTTTAGGACTG----------------TGG--TGA-TGG--GGCTG--CA--A-------GAAAA-----------A--CTGCAACGGCACCGAAAAGCAAAGTGGA-T-A-TG------CACATCNN--G--GCTTCA----C------------A-------T---T-------CA----CAGCAAGTT----T--T-GTCAA----AA--CGNGGTCGTTGGTTGTGGAGAAGA-AGCACGGGCAAGA-TTTTTCATTCCGAAAATT-CAAAGGGCTGTTACTCG---AA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAA-TTC--CAAC--TGA-TGTT-AAGAGAAGAAGCACGG-GCAAGATTCTTCA-----ACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACCACTAGATTTTATACTGATCCTTCTTGCAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGANTTT-----CCAAA-AATGCAAAGGGCC--GT-CAT-ACTCAGNCGA---TAATCAAACAG-NCG-AACT-AAGN-----GGATATGCGCA--AATAG-ATCTCACA-------CTGATC-NTT-C---C-A-GC-AAGTTTCGGCTNAAT-T-G-NCCA--AGAT--G--TCG--A----GAGNTGTCCGGA----CAAG--ATTTTTCATTCCGANAATGCAAAG-GGCCGTTACTCGGTCAAANATCATCGAA--CANAAC-GCAAAAGG--AAAT---GATNTGCAACTAGACGTTCANTCTAACCTTCCCGCGNCAAGTTTNAGCCAAATCTGACCACAGATGCCGGGGTTCTNTGGACAGGTCGNCGNGATGTGACCACAGATGCNNGAGNTNNCCGGACAAG-ATTTTTCATTCCGAAAATGCAAAGGGCCGTTACTCGGTCAAAAATCATC--AAAC-AC--AGANTGC-AAAAGG---A-G---G--CAGATAT--GCAAC-ACACT-T-TCA-----ACTTCCCNG--CAA-GTTTCAGCTNAATCT-GACCACANATATCA-AGAG--TTCT
Reference ( gi|1 ) : AATACATTTGTCAGAATTATC----G-AAAATGTTA--TTGTAAATGTTCAAAACTG-CCGAGTTTTAGGACTG----------------TGG--TGA-TGG--GTCTG--CA--A-------GAAAA-----------A--CTGCAAAGGCACAGAAAATCAAAGTGGA-T-A-TG------AACATCTT--G--GCTTCA----C------------A-------T---T-------CA----CAGTAAGTT----T--T-GTCAA----AA--CAAGGTCGTTGGTTATGGAGAAGA-AGCATGGGCAAGA-TTTTTCATTCAGAAAATT-CAAAGGGCC-TTACTCT---AA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAA-TTC--TAAC--TGA-TGCCAAACAGAAGAAGCACAG-ACAAGCTTTTTCA-----ACATTTGTGTTATAACTCAACTACATGTAAAAATCATCAAATCCAACCTCTCAGTACACAACCAGACTGAATACTACTCATTC--GCAGCATGTTTCATTAAAATATAT---------GAGAGTTT-----CCAAA-AATGCAAAGGGCC--AT-CATCACTCAGTCAA---TAATTAAATAAGTTG-AACTTAAGCT----GAACATGCGCA--GATAA-ATCTCACA-------TTGATC-TTT-C---C-A-GC-AAGTTTCAGCTTAATGT-G-CCCA-CAGAT--G--TC---A----GAGTTCTCCAGA----CAAG--CTTTTTAATTCTGACGGTGCAAAG-GGCTGCAACTCGGTCAAATATTACTGAA--TACAACTGCGAAAGGTAAAATTTAAATGTGCAAC-AAACGTTCAC----ACTTT--TA-AGC-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCAGACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAG-GTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACT--AAAT-AC---GACTGC-AAAAGGTACATG--AATTTAAATAT--GCAAC-ACACT-T-TCAC----ATTTTCCAG--C-A-GTTTTGGCTTAATGT-GACCACAGATGTCA-AGAG--TTCT
gi|8 : AATAGAGTAGTGAGAATTATC----T-TAAATGTTA--TTGTTACAGTTCAAAACTG-GTAAGTTTAACAACT-----------------TG---TGA-TGA--GACTG--CA--A-------GAAAA-----------A--CTACAAAA-CACCAAAAAGCAAAGTGGA-TTA-TA------CACACAGA--G--GTTTCA----C------------AGCAATCAT---T-------CG----CAGCAAATT----T--T-GTT-----------------GTTAGTTGTGGAGAAAA-AGCATGGGCAAGA-TTTTTCACGCAGAGATTT-CAAAGG
gi|7 : aacttttttctaaaaataaatacaacAATACAATTGTGAGAATAATCTTATG-A----GTAA--TTGTTAATGTTCAAAACTG-ATGAGTTTTATGACTA------------------G--TGA-GAG--G-CTG--CA--A-------GACAA-----------A--CTGCAACGGCACCAAAAAGCAAAATAGA-T-A-TG------CATATCTA--G--GCTTTA----CTTTACATCCATCA-------T---T-------CA----CAGCAAATT----T--G-GT--------------GGTCATTAGTTATTAAAAGGA-A----GGGT-AGA-TTTCTCA
gi|2 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctATACAATTGTGAGAATTATT----T-TAA-TAATA--TTGTAAATATTCAAAACTG-GCCAGCTTTAAAACTG------------------G--TGT-TGG--GGCTG--CA--A-------GGAAA-----------A--CTGCCACAGCAATAAAAAGCAAAATGGATT-A-TG------CACATCGA--A--GCTTTG----C------------A-------T---TGTTCATGCA----CAGCAAGTT----TTCT-TTCAA----AA--CATAGTTGTTTCTTTTGGAAAATA-AGCAAGAG-AAGA-GTTTGGAT--AGGAGAT----GAGGG--------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAG-TTG--CAAC--TGA-TATTCAAGAGGAGAAGC-CAGAACAAGATTCTTCA-----
gi|5 : tatatgagaaaaactatgtctccctcATACAGTTGCGAAAATTATC----T-TAAATGTTA--TTGTTAATGTTCAAAAGTG-AAAAGTTTTAGGACAG------------------A--TGA-TGA--CATTG--CA--A-------GAAAA-----------T--CTGAAATGGCACTGAAGGGCAAAGTGGA-T-AATG------CACGTCAT--A--GAT-CA-----------------A-------T---T--------G----CTGTAAGTT----T--T-GT--A----AA--CAAGGTCATTGGTTGTGGAAAAG----------------------ATTCAAAAGG------AGGGA---TACATG---AACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTA-TTC--CAGC--TGA-TG--GGTCAAGAGAATCCCAG-GAAAGATTCTTCAGTCTGACATTctccaaagaaagggactgtacaacttagatgataattacacaactgggatatgcaccactagattttatactgatccttcttgcagcaagtttcattgtaa
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGAGAATTATC----T-TAAATGTTA--CAGTTAATGTTCGAAACTG-TTGAGCTTTAGGAC------------------TAG--TAA-TTG--GGCTG--CA--A-------GAAAA-----------A--CTGAAATAATACAGAAAAGCGAAGTGGA-T-A-TA------CTCA-CTG--GA-GCATCA----C------------A-------T---G-------GAT---CAATAA-TTATAAT--T-GTCAA----AA--CGGGGTTGTTGATTGTGGAGAGGA-GGCATGGGgaaaaatggctacaact
gi|11 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcATACATTTGTGAGAATTATC----T-TAAATGTTA--TTGTTTATGTTCAAAACTG-TCGAGTTTCAGGAC-----------------------TAA-TGA--A-CTG--CA--A-------GAGAA-----------A--CTGCAAAAGCACTTAAAAGCAAA-TTGA-T-A-TT------CACATTAA--G--GCTTCA----C------------A-------T---C-------CA----T--TATGTT----T--T-GTTAA----AA--CA
gi|14 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAATTGTGAGATTTATC----T-TAA----TA--TTGTAAATATTCAAAAATG-----GTGGTGGGACTGAAATGGCACCGAAAACTGG--TGT-TGG--GACTG--AA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCGAAA-TCAAAGTGGA-C-A-TG------CACA--TT--GATGTTTTA----C------------A-------TCAAT-------CATTATCAGCAAGTT----T--tg
gi|15 : ATACAATTTTGAGAATTTTC----TTAAAATGTTG--TTTT---TTTTCAAAACTG-GGGAGCTTTATG--CA----------------TAGACTGA-TGTCTGTCTGGCTAC-A-------GAAAA-----------A--CTGCAATGGCACTGAGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGAGAATTATC----T-TCAATGTTA--TTGTTAATGTTTAAAACTGACTAAG---TGGGAC------------------TGG--TGA-TGG--GGCTG--CATGA-------AAAAA-----------A--CTGCCACGAGACCGAAAAGTAAAGCAAA-T-A-T
gi|21 : cagaatttgtcttgtgggggaaatattacgtgcccccctacACAACTGTGAGAATTATT----T-GAAATGTTAACTTATGAGTGTTCAAAACTG-GCAAGTTTTAGGACTG----------------tatatgcacgtcaaacct
gi|9 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaTTGTGAAAATTATC----T-TAAAAGTTA--TTGTTAATGTTCAAAACTG-GCAAGTTTTA---------------------------TGA-TGG-----------------------AAA-----------ATCCTTTGAA--C-CAGACTA-CAAAAGAGA-T-A-TGTCGAAAAAGATTTT--A----TTCT----A------------A-------T---C-------CATCT-CAGCAAATT----T--C-AATGA----AATTCAGGA--ATTGGTTAAAGAGAAGA-ATCACGGACAAGA-TATTTAATTCCGAAAATcaaagtgaggctt
gi|23 : tatataactataactagaacaaactatgcacgcttgtatgaGTGAGAACTATC----T-TAAATACCA--TTGTTAATGTTCAAAACTG-GCGAGac
gi|12 : gtcaattttttttaaataacaactagaaaactatatctcccccttataaaatgGAATTATC----A-TAATTGTTA--TTGTTAATCTTCAAAACTG-ATGAGTTTTGGGAT------------------TGG--TGA-TTG--GACTG--TC--A-------TAAAA-----------A--CTACAATAGCACCAAAAAACAAAGTGGA-T-A-TG--------CATCTTGAG--GCTTTA----CATCAATAATT--A-------T---T-------CC----CAGTTAGTT----T--T-GTCAA----AG--T-ATGTCGTTGGTTGTTGAGAAAA-AGCACTAGCAA
gi|4 : atacaaacgtgaactgAATTATA----T-TAAATGTTT--TTGTTAATCTACAATACTG-GCGAGTTTTAGGACTG------------------G--TGACTGG--G-CTG--CA--A-------GAAAA-----------A--CTGTAATGGCACCGCTACGCAGAGTGGA-A-A-TG------CACATCGA--G--GTTTCA----C------------A-------TCGAT-------CA----TTG-----T----T--T-GT-GA----AA--CATAGCCGTTGGTTGTTAAGAAGA-AGCt
gi|28 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattataaaactatgacTATC----T-TAAATGATA--TTGTTA-TATTCAAAACTG-GCGAGTTTcttcagataatgcaaaggccacaactcagtcaaacattatcaaacacttaggccaaagggatgtgtgcaaataaaactcactgatcattcctagcaagtttcagttagtttcagtta
gi|27 : gtgaaataaGAGATTTAGCATTG------------------A--TGA-TGT--GGATG--CA--A-------GAAAA-----------A--CTGTAATGGCAC
gi|25 : ccggtGAAAAACAAAGTGGA-T-A-TA------CACGTCAA--G--GTTTCATGATC------------A-------T---T-------TG----AAACAAGTT----T--T-GTCAA----AA--TGCGGTCATTGGTTGTGc
gi|17 : gaaatggttat------------A-------T---T-------CA----CAGCAAGTT----T--T-GTCAT----AA--TGTGGTTGTTGGTTGTGGAGAAGA----ATG----AGA-TTTTTCATTCTGAAAATT-CACAGGGCTGTTACTC
gi|10 : tacaacagcatcatctattagcaaaatggattatgcta-------T---T-------CA-----AGCAAGTT----T--CAGTGAATTCCAA--CAA------TGGTTCAAGAGAAGA-AGCACAGACAAGG-TTCTTCATCC-CATCATTGAAAAGGGCT-TTAggccaaagatcaccaaatgggaatgctaaaaggata
gi|19 : atgcaaaaggaatatactttaacaagaaaaaaaaagacttcagactgaccctGAGAAGA-AGAGCGGGCACGA-TTCTTCATTCaatgccccaaaccatcaaaccagaatgtaatagggatatacacaactagatttcattctgaaattggaatattggttcaagagaaaaaaa
gi|3 : aactaggtttcaagctgatcattcacagttctaaacgtttattgaattccatttgaatgtttaaAGATAGC-TGGACAAGAATTTTTTATTTCAAAAATA-CAAAGAGTCGTTACTCTGTCAA-AActgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|9 : cttgccaagcaagtttcattgaaatatgtccctcaaacaagactttaaattccgaaaatgaaaactgctttatcttaaataatgcaataaaaacagaatgcaaaagagaaatgtgcaacaagacatcacactgatcattccaacaagatttggctaattcttaccaaagatgtctgTCG---AA-AA--AGATTTTATTCTAATCCATCTCAGC----AA-ATTTCAATGAAATTCAGGAAT--TG---GTTAAAGAGAAGAATCACGG-ACAAGATATTTatcattgaaaaaacgaaaaagggatatgcacaagtagatttcacagcaagtttcagctaaatctgatcacaaatgtcagggttttgtgacaggtcgacagaaagacagatgaaagcatatgtttaaaagtaaatttaccaatt
gi|10 : tatataactataactagaacaaactatgcacgcttgtatgattgtgaaaattatcttaaaagttattgttaatgttcaaaactggcaagttttatgatggaaaatcctttgaaccagactacaaaagagatatg---AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAA-TTC--CAACAATGG-TTC--AAGAGAAGAAGCACAG-ACAAGGTTCTTCA-----aattccgaaaatac
gi|18 : atgcaaaaggaatatactttaacaagaaaa-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAA-TTT--CGAC--tcccatcattgaaaagggctttaaatgccccaaaccatcaaaccagaatgtaatagggatatacacaactagatttcattctgaaattggaatattggttcaagagaaaaaaa
gi|19 : gtcaaaaatcatttacccagaatgcaaaagggacaaggc-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAA-TTC--CATT--TGAATGTTTAAGAGAAGAAGAGCGG-GCACGATTCTTCA-----caaatttatcagagaggtttctggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|4 : TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAG-TTttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|8 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattataaaactatgacaattatattaaatgtttttgttaatctacaatactggcgagttttaggactggtgactgggctgcaagaaaaactgtaatggcaccgctacgcagagtggaaatgcacatcgaggtttcacatcgatcattgtttgtgaaacatagccgttggttgttaagaagaagccttcagataatgcaaaggccacaactcagtcaaacattatcaaacacttaggccaaagggatgtgtgcaaaAATCATTCGCAGC----AA-ATTTTGTTG-----T--TAGT--TG--TGG-----AGAAAAAGCATGG-GCAAGATTTTTCA-----tcagtta
gi|2 : aacttttttctaaaaataaatacaacaatagagtagtgagaattatcttaaatgttattgttacagttcaaaactggtaagtttaacaacttgtgatgagactgcaagaaaaactacaaaacaccaaaaagcaaagtggattatacacacagaggtttcacagcTGCACCACTAGATTTTATACTGATCCTTCTTGCAGCAAGTTTCATTcgcagagatttcaaagg
gi|3 : tatatgagaaaaactatgtctccctcatacaattgtgagaattattttaataatattgtaaatattcaaaactggccagctttaaaactggtgttggggctgcaaggaaaactgccacagcaataaaaagcaaaatggattatgcacatcgaagctttgcattgttcatgcacagcaagttttctttcaaaacatagttgtttcttttggaaaataagcaagagaagagtttggataggagatgagggaggcttcaggctgatcattcccagtatgttttagtgagttgcaactgatattcaagaggagaagccagaacaagattcttcactccaaagaaagggactgtacaacttagatgataattacacaactgggataAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAA-AATGAAAACTGCTTTAT-CTTAAATAATGCAA---TAA--AAACAGAATGCAA---AAGA-----GAA-ATGTGCA---ACAAGACATCACA-------CTGATC-ATT-C---C-A-AC-AAGATTTGGCTAATTCT-T-ACCA-AAGAT--G--TC---T----GAGATAGCTGGA----CAAGAATTTTTTATTTC-AAAAATACAAAG-AGTCGTTACTCTGTCAAAAATCATTGAA---AAAAC-GAAAAAGG---------GATATGC-AC-AA--GT--AG----A-TTT--CACAGCAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTTGT-GACAGGTCGACAGAAAG-----ACAGATGgtaa
gi|4 : cttgccaAGCCT-----TCAGATAATGCAAAGG-CC--A--CA--ACTCAGTCAAACATTATCAAACA--------CTTAGGCCAAAGGGATGTGTGCA--AATAA-AACTCAC---------TGATC-ATT-C---CTA-GC-AAGTTTCAG-TTAGTaaagcatatgtttaaaagtaaatttaccaatt
gi|20 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattataaaactatgacaattatattaaatgtttttgttaatctacaatactggcgagttttaggactggtgactgggctgcaagaaaaactgtaatggcaccgctacgcagagtggaaatgcacatcgaggtttcacatcgatcattgtttgtgaaacatagccgttggttgttaagaagaAATTT-----CTAAA-A-TACAAAGGGAC---T---TTACTCAGTCAA---TAACCA------TCG-AACCGAATCG----CAAAA---G-A--GATAT-GTCCTACAAGAAAAACTGATC-TTT-TT--C-A-GT-AAGTTTCAGCTCTAT-----CTCA--ATAT--A--TCGGAG----GAGTTGTCCGGA----CAAttcagtta
gi|2 : T-----CCAAA-GA---AAGGGACT--GTACA--ACTTAGATGA---TAATTACACAA-CTG---------------GGATATGCACC--ACTAG-ATTTTATA-------CTGATC-CTT-CTTGC-A-GC-AAGTTTCAttcc
gi|14 : tatatgagaaaaactatgtctccctcatacaattgtgagaattattttaataatattgtaaatattcaaaactggccagctttaaaactggtgttggggctgcaaggaaaactgccacagcaataaaaagcaaaatggattatgcacatcgaagctttgcattgttcatgcacagcaagttttctttcaaaacatagttgtttcttttggaaaataagcaagagaagagtttggataggagatgagggaggcttcaggctgatcattcccagtatgttttagtgagttgcaactgatattcaagaggagaagccagaacaagattcttcacG-AAATCAAAGT----GGACATGCACATTGATG---TTTTACA-------TCAATC-ATTAT---C-A-GC-AAGTTTttgtaa
gi|18 : atacaattgtgagatttatcttaatattgtaaatattcaaaaatggtggtgggactgaaatggcaccgaaaactggtgttgggactgaaatggcaccgaaaactggtggtaggactgcaatggcaccGCA--ACTAG-ATCTCACA-------CTGTTC-CTT-C---C-CTGC-ATGTTTCAGC-TAATTTCG-ACCA-AATTT--A--TCAG-A----GAGGTTTCTGGC----CAAG--ATTTT
gi|10 : gtcaaaaatcatttacccagaatgcaaaagggacaagTCAGA-------CTGACCCTTT-C---A-A-GC-AAGTTTCAG-TGAAT-T---CCAA-CA-AT--GGTTC---AAGAGAAGAAGCACAGA----CAAG--GTTCTTCATCCCATCATTGAAAAG-GGCTgtgacagattcacagacagcgctaaaacaatgttt
gi|5 : atgcaaaaggaatatactttaacaagaaaaaaaaagactTGATT-CTT-C---C-C-GTTAAGTTTC-----AATGT-ATTCCAGCTGATGGG--TCA--A----GAGAATCCCAGG----AAAG--ATTCTTCAGTCTGACATTGAAAAATGGCTACAACTttaaatgccccaaaccatcaaaccagaatgtaatagggatatacacaactagatttcattctgaaattggaatattggttcaagagaaaaaaa
gi|17 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcatacagttgcgaaaattatcttaaatgttattgttaatgttcaaaagtgaaaagttttaggacagatgatgacattgcaagaaaatctgaaatggcactgaagggcaaagtggataatgcacgtcatagatcaattgctgtaagttttgtaaacaaggtcattggttgtggaaaagattcaaaaggagggatacatgaacaactaggctccaggaTT-CA--C-A-GC-AAGTTTTGTCATAATGT-G--------GTT--G--TT---G----G--TTGTGGAGAAGAATGAG--ATTTTTCATTCTGAAAATTCACAG-GGCTGTTACTCGGCCAAAGATCACCAAA--TGGGAATGCTAAAAG
gi|4 : tacaacagcatcatctattagcaaaatggattatgctaaTTCAGATAATGCAAA--GGCCACAACTCAGTCAAACATTATCAAA--CACgata
gi|13 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattataaaactatgacaattatattaaatgtttttgttaatctacaatactggcgagttttaggactggtgactgggctgcaagaaaaactgtaatggcaccgctacgcagagtggaaatgcacatcgaggtttcacatcgatcattgtttgtgaaacatagccgttggttgttaagaagaagccTACAAAG-GACTGTTACTCAATCAA-TAATAATCAAACCATAAC-ACAAAAG---AAAT----ATTTGCAACTAGAC-TTCACTCTAACCTTCCTG-GTC-AGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTGGATAAGTTTTTGTGATGttaggccaaagggatgtgtgcaaataaaactcactgatcattcctagcaagtttcagttagtttcagtta
gi|13 : aATCTGACCACAGATACAGGAGTTCTCTGGATAAG-TTTTTgatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|3 : atacaaaggactgttactcaatcaataataatcaaaccataacacaaaagaaatatttgcaactagacttcactctaaccttcctggtcagtttaagccaaCCAAAGATGTCTGAGATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAAAAA-AC---GA-----AAAAGG--------------GATAT--GC-AC-A-AGT-----AG----ATTTCACAG--CAA-GTTTCAGCTAAATCT-GATCACAAATGTC--AGGG--TTTTgtgatggatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|10 : cttgccaagcaagtttcattgaaatatgtccctcaaacaagactttaaattccgaaaatgaaaactgctttatcttaaataatgcaataaaaacagaatgcaaaagagaaatgtgcaacaagacatcacactgatcattccaacaagatttggctaattcttaCAGACAAG-GTTCTTCATCCCATCATTGAAAAGGGCTgtgacaggtcgacagaaagacagatgaaagcatatgtttaaaagtaaatttaccaatt
gi|17 : atgcaaaaggaatatactttaacaagaaaaaaaaagacttcagactgaccctttcaagcaagtttcagtgaattccaacaatggttcaagagaagaagcaAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACC--AAAT-GG---GAATGCTAAAAGGttaaatgccccaaaccatcaaaccagaatgtaatagggatatacacaactagatttcattctgaaattggaatattggttcaagagaaaaaaa
gi|4 : tacaacagcatcatctattagcaaaatggattatgctaattcacagcaagttttgtcataatgtggttgttggttgtggagaagaatgTGCAAAGG-CCACAACTCAGTCAAACATTATC--AAAC-ACTTAGGC--C-AAAGGG---ATG--TGTGCAAATA----AAAC-TCACT-GATCA-------TTCCTAG--CAA-GTTTCAG-TTAGTata
gi|13 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattataaaactatgacaattatattaaatgtttttgttaatctacaatactggcgagttttaggactggtgactgggctgcaagaaaaactgtaatggcaccgctacgcagagtggaaatgcacatcgaggtttcacatcgatcattgtttgtgaaacatagccgttggttgttaagaagaagccttcagataaTACAAAGGACTGTTACTCAATCAATAATAATC--AAACCAT---AAC-AC-AAAAG--------------AAATATTTGCAACTAGACT-T--CACTCTAACCTTCCTGGTC-A-GTTTAAGCCAAATCT-GACCACAGATA-CA-GGAG--TTCTttcagtta
gi|18 : aGTCAAAAATCATT-----T-ACCCAGAATGC-AAAAGGGACAAGGCAA-CTAGATCT------C-ACACTGT-TC-------CTTCCCTG--C-ATGTTTCAGC-TAATTTCGACCAAATTTATCAGAGAGGTTTCTctggataagtttttgtgatggatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AGATTCTTCAGACTGATCGTTTCTATTTAGTTTCAGTTCCTTTGGCGGTTCAAGAAAAGATGCACCGACATGATTCTTCATTCAAACATTGGAAAGGGGCATAACTTGC
Unaligned ( gi|24 ): GACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAACCAGATTGCAAAGGGGATATATGCACAACTAGATTTGATA
Unaligned ( gi|26 ): CCAACTAATGGTTCAAGAGAAGAAATGCAACCTGGCTTCTTTATTGCAACATTGTAAAG
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 111111111111111111
lowQualScore : 44444444444444444444 1111111 11111111111 444444444444444444444444444444444444444444 1111111111111111 333333333333333333333 333333333333333333 1111 22222 77777777777777777777777777777777777777777777777777777777777777777777777777 11 333333333 33333 3333333 333333 77777777777777777777777777 11 1 11 11111 2 1111 77777777777777777777777777777777777777777777 22 1111 55555555555 11 2 99999999999999999999 1 33333 222 1 000000000000000000 2 333 11 1 2 22
lowQualScore : 5555 33 2 33 2 66666 88888888888888888888 0 44 0000000 44444444444 5 555 77777 666 44 999999999999999999999999999999999999999999 6666 44 7 777 666 6666666666666666 55 0 66 000000000000000000000 333333333333333333 11 1 0000 5 777 7777 33333 5 5 66 66 2 0 11111111111111111111111111111111111111111111111111111111111111111111111111 0 6 4 2 7 88 777777777 1 33333 7 4444444 444444 6 22222222222222222222222222 11 7 0 00 55555 5 88 2 2222 5 44 1 77 44444444444444444444444444444444444444444444 6 1 1 0 0 1 4 1 1 22 1 0000 11111111111 1 88 7 3 88888888888888888888 1 0 0 0 0 1 2 33 1 88888 888 1 22 0 777 6 8 1 1 888 1 0 111111111111111111 7777 0 888 1 99 1 4 0 2 55 0 77
lowQualScore : .... .. . .. . ..... .................... . .. ....... ........... . ... ..... ... .. .......................................... .... .. . ... ... ................ .. . .. ..................... .................. .. . .... . ... .... ..... . . .. .. . . .......................................................................... . . . . . .. ......... . ..... . ....... ...... . .......................... .. . . .. ..... . .. . .... . .. . .. ............................................ . . . . . . . . . .. . .... ........... . .. . . .................... . . . . . . . .. . ..... ... . .. . ... . . . . ... . . .................. .... . ... . .. . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 44444444444444444444 7 22 0000000 66666666666 1 000 77777 555 33 666666666666666666666666666666666666666666 5555 22 2 888 444 4444444444444444 33 2 99 999999999999999999999 111111111111111111 66 0 6666 0 888 8888 99999 0 0 99 99 2 2 99999999999999999999999999999999999999999999999999999999999999999999999999 7 7 7 5 3 33 000000000 0 33333 3 0000000 333333 0 55555555555555555555555555 00 0 0 88 77777 3 77 9 1111 7 44 0 99 11111111111111111111111111111111111111111111 7 0 0 6 4 0 0 0 4 44 0 2222 88888888888 0 33 3 3 77777777777777777777 0 7 7 7 7 0 0 00 0 00000 000 0 00 7 777 0 3 2 2 888 0 0 888888888888888888 0000 0 555 0 55 0 0 5 5 00 0 55
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------ACTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCGAGGCTTCA------------C----------AT---T-------CG----CAGCAAGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTT--TCA----TT-CNGAAAATT-----CAAAGGGNCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCA---ACTGA-T--GGTTC-AA-G-AGAAGAA--GCA--CGGACAAGATTCTT-----C-----A-----A-CATT--CGAGNGATANNNACGCTACAANTNANAANANNANAACGCAACCGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TCAT-ACTCAG-----TCAATAACCA---AACA-G---NCGAA---CA-AAGG-GGATATG-CGCAANTAGATT--TCACGCTGATC-NTTC-CAGC----AA-GTTTCGGCTNA--AT-TGCC----CA---GGA--TG--TC---GA--GA-GATG--NC-CGGACAAG-ATTTTTCATTCCGANAATGCAAAGGGCCGTNACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC--GCG-CAAGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCGGACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCGGACGAGATTTTTCATTCCGACGNTGCAAAGGGCTGTAACTCGGCCAAAAATCACCGAACGCGGANTGC-AAAAGG-AC-A-G----CA----NATATGCAACACACTGTTCACACTTCCCNGCANGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------ACTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACATCNNGGCTTCA------------C----------AT---T-------CA----CAGCAAGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTT--TCA----TT-CCGAAAATT-----CAAAGGGCTGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCA---ACTGA-T--G--TT-AA-G-AGAAGAA--GCA--CGGGCAAGATTCTT-----C-----A-----A-CATT--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACAAGANT-----TTCCAAAAATGCAAAGGGCCGTCAT-ACTCAG-----NCGATAATCA---AACA-G---NCGAA---CT-AAGN-GGATATG-CGCAAATAGATC--TCACACTGATC-NTTC-CAGC----AA-GTTTCGGCTNA--AT-TGNC----CA---AGA--TG--TC---GA--GA-GNTG--TC-CGGACAAG-ATTTTTCATTCCGANAATGCAAAGGGCCGTTACTCGGTCAAANATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGACGTTCANTCTAACCTTCCCGCGNCAAGTTTNAGCCAAATCTGACCACAGATGCCGGGGTTCTNTGGACAGGTCGNCGNGATGTGACCACAGATGCNNGAGNTNNCCGGACAAGATTTTTCATTCCGAAAATGCAAAGGGCCGTTACTCGGTCAAAAATCATCAAACACAGANTGC-AAAAGG----AGG----CA----GATATGCAACACACT-TTCA-ACTTCCCNGCAAGTTTCAGCTNAATCTGACCACANATATCA-AGAG--TTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------ACTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCTTGGCTTCA------------C----------AT---T-------CA----CAGTAAGTT----T--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTT--TCA----TT-CAGAAAATT-----CAAAGGGCC-T-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTA---ACTGA-T--G--CC-AA-ACAGAAGAA--GCA--CAGACAAGCTTTTT-----C-----A-----A-CATT--TGTGTTATAACTCAACTACATGTAAAAATCATCAAATCCAACCTCTCAGTACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATATAT---------GAGAGT-----TTCCAAAAATGCAAAGGGCCATCATCACTCAG-----TCAATAATTA---AATAAG---TTGAA---CTTAAGCTGAACATG-CGCAGATAAATC--TCACATTGATC-TTTC-CAGC----AA-GTTTCAGCTTA--ATGTGCC----CAC--AGA--TG--TC----A--GA-GTTC--TC-CAGACAAG-CTTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAAGC----AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCAGACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATAC-GACTGC-AAAAGGTAC-ATGAATTTA----AATATGCAACACACT-TTCACATTTTCCAGC-AGTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCA---AC-AA-T--GGTTC-AA-G-AGAAGAA--GCA--CAGACAAGGTTCTT-----C-----ATCCC-ATCATTGAAAAGGGCTTTAAATGCCCCAAACCATCAAACCAGAATGTAATAGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------ACTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTAAGGCTTCA------------C----------AT---C-------CA----T--TATGTT----T--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------ACTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTGAGGCTTTA------------CATCAATAATTAT---T-------CC----CAGTTAGTT----T--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTG-GTCA-GTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTGGATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGACTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTGATGTTTTA------------C----------ATCAAT-------CATTATCAGCAAGTT----T--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------ACTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------ACTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTC
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC------------TA-----------------------AT---T-------CA----CAGCAAGTT----T--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTT--TCA----TT-CTGAAAATT-----CACAGGGCTGT-TACTCGaaacct
gi|17 : AAATGGATT----ATGCTAAT----TCACAGC----AA-GTTTTGTCATA--ATGTGGT----TGTT-GGT--TG--TG---GA--GA-A---------GAATGAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|17 : tacaacagcatcatctattagcaGAATGAGATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATG-GGAATGCTAAAAGG----Ata
gi|18 : tacaacagcatcatctattagcaaaatggattatgctaattcacagcaagttttgtcataatgtggttgttggttgtggagaaGTCAAAAATCATTTACC-CAGAATGC-AAAAGGGACAAGG----CAACTAGATCT----CACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTta
gi|19 : -AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCA---TTTGAAT--G--TTTAA-G-AGAAGAA--GAG--CGGGCACGATTCTT-----C-----A-----ggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : AACTAGGTT--TCAAGCTGATC-ATTCACAGTTCTAAACGTTT--ATTGA--AT-T--C----CATTTGAA--TG--TTTAAGA--GAAGAAG--AG-CGGGCACG-ATTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------ACTGCCACAGCAATA---AAAAGCAAAATGG-----ATT-ATGCACATCGAAGCTTTG------------C----------AT---TGTTCATGCA----CAGCAAGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTT--GGA----T---AGGAGAT--------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCA---ACTGA-T--A--TTCAA-G-AGGAGAA--GCC--AGAACAAGATTCTT-------------------CACT--CCAAAGAAAGGGACTGTACAACTTAGATGATAATTACACAACTGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAAT-----TTCTAAAA-TACAAAGGGACTT--T-ACTCAG-----TCAATAACCATCGAAC-------CGAATCGCA-AAAG-AGATATG-TCCTACAAGA-----AAAACTGATC-TTTTTCAGT----AA-GTTTCAGCTCT--AT---CT----CA---ATA--TA--TC---GGAGGA-GTTG--TC-CGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaAGATTCTTCAGACTGATCGTTTC-TATT----TA-GTTTCAGTTCC--TT-TGGCGGTTCA---AGA------------A--AA-GATG--CA-CCGACATG-ATTCTTCATTCAAACATTGGAAAGGGGCATAACTTGt
gi|22 : CTTCAGACTGATCGTTTCTATT----TA-GTTTCAG----TTCC----TTTGG-C--GGTTC-AA-G-AAAAGAT--GCA--CCGACATGATTCTT-----CATTCAA-----A-CATT--c
gi|23 : agattATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGggaaaggggcataacttgc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAAC-CAGATTGC-AAAGGG----G-------A----TATATGCA
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCAAGGTTTCATGAT--------C----------AT---T-------TG----AAACAAGTT----T--TGTCAAAATGCGGTCATTGGTTGT---Gcaactagatttgata
gi|26 : gaaatggttatCCA---ACTAA-T--GGTTC-AA-G-AGAAGAAATGCAACCTGGC----TTCTTTATTGC-----A-----A-CATT--
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------ACTGTAATGGCACCgtaaag
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT--CTTAAATAATGCAATAA--A---AACA-GAATGCAA-------AAGA-GAA-ATG-TGCAACAAGACA--TCACACTGATC-ATTC-CAAC----AA-GATTTGGCTAATTCT-TACC----AA---AGA--TG--TC---T---GA-GATA--GC-TGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCA--------------CAGCAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTTGT-GACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------ACTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCGAGGTTTCA------------C----------ATCGAT-------CA----TTG-----T----T--TGT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACTCAGTCAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCA---aaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------TCTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCATAGA-TCA-----------------------AT---T--------G----CTGTAAGTT----T--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------T--TCA----------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCA---GCTGA-TGGG--TC-AA-G----AGAA--TCC--CAGGAAAGATTCTT-----C-----AGTCTGA-CATT--gtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------ACTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTGGAGCATCA------------C----------AT---G-------GAT---CAATAA-TTATAAT--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGGgaaaaatggctacaact
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------ACTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCTAGGCTTTACTTTACATCCATC----------AT---T-------CA----CAGCAAATT----T--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTC--TCA----
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------T-GTGATGAGACTGCA--A-------GAAAA-----------ACTACAA-AACACCA---AAAAGCAAAGTGG-----ATT-ATACACACAGAGGTTTCACAGCAAT-----C----------AT---T-------CG----CAGCAAATT----T--T-----------GTTGTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTT--TCA----CG-CAGAGATTT-----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA-----TGA
gi|9 : tatataactataactagaacaaactatgcacgcttgA---ACCA-G---ACTA----CA-AAAG-AGATATGTCGAAAA-AGATT--TTATTCTAATC-CATCTCAGC----AA-ATTTCAATGAA--AT-T-------CA---GGAATTGGTTA---AA--GA-GAAGAATCACGGACAAG-ATATTTAATTCCGAAAATACtggaaaatcctttgaaccagactacaaaagagatatgtcgaaaaagattttattctaatccatctcagcaaatttcaatgaaattcaggaattggttaaagagaagaatcacggacaagatatttaattccgaaaatac
gi|9 : tatataactataactagaacaaactatgcacgcttgtatgattgtgaaaattatcttaaaagttattgttaatgttcaaaactggcaagttttatgatggaaaatcctttgTCGAA-AA--AGATTTTATTCTAATCCATCTCAGC----AA-ATTTCAATGAAATTCAGGAATTG-----G--TT-AAAG-AGAAGAA--TCA--CGGACAAGAT
gi|9 : tatataactataactagaacaaactatgcacgcttgtatgattgtgaaaattatcttaaaagttattgttaatgttcaaaactggcaagttttatgatggaaaatcctttgaaccagactacaaaagagatatg---T-------CT----CAGCAAATT----T--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATT--TAA----TT-CCGAAAATatttaattccgaaaatac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 44444444444444444444 11111111111 666666666666666666666666666666666666666666 111 111111111 333333333333333333333333333 44444444444444 1111 6666666666666666666666666666666666666666666 11 1 33333 11 333333333 33333 1 111111 2222 77777777777777777777777 111 11 1 1111 11 555555555555555555555555555555555555 1 22 1111 55555555555 11 1 666666666666666666 1111 22222 333 1 777777777777 1 222 2 1 11
lowQualScore : 5555 33 2 33 2 66666 99999999999999999999 9999999999 33333333333 33 7 444 77777 2 8 2 8888 1 333333333333333333333333333333333333333333 44 6666 111 777 666 444444444 777777 22 111111111111111111111111111 22222222222222 7 1 1 0000 5 2 2 555 66 5 6 1 0 5555555555555555555555555555555555555555555 1 1 1 44 22 1 2 22222 6 1 1 7 88 777777777 1 33333 2 666666 8888 99999999999999999999999 9 0 4 0 22 333 3 11 6 7777 8 77 1 11 777777777777777777777777777777777777 0 0 0 22 1 1 1 22 1 0000 11111111111 1 88 7 3 888888888888888888 44 0 9999 33 1 55555 0 0 11 1 4 222 1 0 222222222222 1 4 5 111 1 0 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . ..... .................... .......... ........... .. . ... ..... . . . .... . .......................................... .. .... ... ... ... ......... ...... .. ........................... .............. . . . .... . . . ... .. . . . . ........................................... . . . .. .. . . ..... . . . . .. ......... . ..... . ...... .... ....................... . . . . .. ... . .. . .... . .. . .. .................................... . . . .. . . . .. . .... ........... . .. . . .................. .. . .... .. . ..... . . .. . . ... . . ............ . . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 11111111111111111111 4444444444 66666666666 99 5 777 11111 9 6 7 9999 9 000000000000000000000000000000000000000000 22 5555 888 888 444 555555555 999999 99 222222222222222222222222222 11111111111111 9 4 0 6666 0 5 2 000 99 0 9 1 8 7777777777777777777777777777777777777777777 0 0 0 33 00 0 0 00000 7 0 0 3 33 000000000 0 33333 0 777777 3333 00000000000000000000000 0 7 7 7 44 444 2 88 0 0000 0 88 0 00 000000000000000000000000000000000000 0 2 2 22 4 0 4 44 0 2222 88888888888 0 33 3 3 333333333333333333 33 7 0000 00 0 55555 7 7 77 2 2 000 0 0 333333333333 0 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------AT---T-------CG----CAGCA--AGTT----TTGT--CAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATT--CAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----AC--AT--TCG---AAAGATAG--ACGCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AAC-A--CGAAT--C--AAAAGAGANATGCGCAACTAGATTTCACGCTGATC-NTTCACAGC----AA-GTTTCGGCTNA--ATG----TGCCCA---AGATGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC--G--CAAGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCGGACGAGATTTTTCATTCCGACGNTGCAAAGGGCTGTAACTCGGCCAAAAATCACCGAACGCGGANTGC-AAAAGG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------AT---T-------CG----CAGCA--AGTT----TTGT--CAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATT--CNGA-------AAA---TT----CAAAGGGNCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCACGGACAAGATTCTT-----C-----A-----AC--AT--TCG---AGNGATANNNACGCTACAANTNANAA-NANNANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TCAT-ACTCAGT----CAATAACCA---AAC-AGNCGAA---C--AAAGGGGATATGCGCAANTAGATTTCACGCTGATC-NTTC-CAGC----AA-GTTTCGGCTNA--AT-----TGCCCA---GGATGTC---G--AGA-GATGNCCGGACAAG-ATTTTTCATTCCGANAATGCAAAGGGCCGTNACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTCGCG--CAAGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCGGACGAGATTTTTCATTCCGACGNTGCAAAGGGCTGTAACTCGGCCAAAAATCACCGAACGCGGANTGC-AAAAGG-ACA--G----CANATATGCAACACACTGTTCACACTTCCCNGCANGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCT----TGGCTTCA------------C----------AT---T-------CA----CAGTA--AGTT----TTGT--CAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATT--CAGA-------AAA---TT----CAAAGGGCC-T-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCA--AACAGAAGAAGCACAGACAAGCTTTTT-----C-----A-----AC--AT--TTG---TGTTATAACTCAACTACATGTAAAAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATAT---------ATGAGAGT-----TTCCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAA---CTTAAGCTGAACATGCGCAGATAAATCTCACATTGATC-TTTC-CAGC----AA-GTTTCAGCTTA--ATG----TGCCCAC--AGATGTC------AGA-GTTCTCCAGACAAG-CTTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAAG--C-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATAC-GACTGC-AAAAGGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCA--AG-AGAAGAAGCACAGACAAGGTTCTT-----C-----ATC---CC--ATCATTGAAAAGGGCTTTAAATGCCCCAAACCATCA-AACCAGAATGTAAT----AGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTA----AGGCTTCA------------C----------AT---C-------------CATTA--TGTT----TTGT--TAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTG----AGGCTTTA------------CATCAATAATTAT---T-------CC----CAGTT--AGTT----TTGT--CAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTCA-GTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTG----ATGTTTTA------------C----------ATCAAT-------CATTATCAGCA--AGTT----Tgatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC----------------TA-----------------------AT---T-------CA----CAGCA--AGTT----TTGT--CATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATT--CTGA-------AAA---TT----CACAGGGCTGT-TACTCGacct
gi|17 : AAATGGATT--ATGCTAAT----TCACAGC----AA-GTTTTGTCATA--ATGTGGTTGTT-----GGTTGTG---G--AGA-A------GAATGAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|17 : tacaacagcatcatctattagcaGAATGAGATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATG-GGAATGCTAAAAGG-ATA--ta
gi|18 : tacaacagcatcatctattagcaaaatggattatgctaattcacagcaagttttgtcataatgtggttgttggttgtggagaaGTCAAAAATCATTTACC-CAGAATGC-AAAAGGGACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCT
gi|18 : TCATTTACCCA-------GAA---TG----CAAAAGGG-----ACAAGGC-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAATTTCGACCAA--ATTTATCAG-AGAGGTTTC-TGGCCAAGATTTTG-----T-----G-----ACAGAT--TC----ACAGACAG---CGCTAAAAggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : gtcaaaaa-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTA--AG-AGAAGAAGAGCGGGCACGATTCTT-----C-----A-----caatgttt
gi|19 : AACTAGGTTTCAAGCTGATC-ATTCACAGTTCTAAACGTTT--ATTGA--AT-----T--CCATTTGAATGTTTAAG--AGAAGAAGAGCGGGCACG-ATTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATA---AAAAGCAAAATGG-----A-TTATGCACATCG----AAGCTTTG------------C----------AT---TGTTCATGCA----CAGCA--AGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT----AGG-------AGA---T-------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGATA-TTCA--AG-AGGAGAAGCCAGAACAAGATTCTT-----C-----A----------C--TCC---AAAGAAAGGGACTGTACAACTTAGAT-GATAATTACACAAC----TGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAAT-----TTCT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAATCGC--AAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTT-CAGT----AA-GTTTCAGCTCT--AT-------CTCA---ATATATC---GGAGGA-GTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCA--AG-AAAAGATGCACCGACATGATTCTT-----CATTCAA-----AC--AT--TGG---AAAGt
gi|22 : agattGAAAAG---------AT-GCACCGACATGATTCTTCATT--CA-A-------ACA---TTG---GAAAGGGGCAT-AACTTGgggcataacttgc
gi|23 : agattcttcagactgatcgtttctatttagtttcagttcctttggcggttcaaATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAAC-CAGATTGC-AAAGGG-G----------ATATATGCA
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCA----AGGTTTCATGAT--------C----------AT---T-------TG----AAACA--AGTT----TTGT--CAAAATGCGGTCATTGGTTGT---Gcaactagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCA--AG-AGAAGAAATGCAACCTGGCTTCTTTATTGC-----A-----AC--AT--T
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACCgtaaag
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AAC-A---GAATG-C--AAAAGAGAAATGTGCAACAAGACATCACACTGATC-ATTC-CAAC----AA-GATTTGGCTAATTCT-----TACCAA---AGATGTC---T---GA-GATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A-------G--CAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCG----AGGTTTCA------------C----------AT-----------CG-----ATCA--TTGT----TTGT---GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGT--CAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCAT---AGA--TCA-----------------------AT---T--------G----CTGTA--AGTT----TTGT----AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------TTCA----------------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCA--AG----AGAATCCCAGGAAAGATTCTT-----C-----AGTCTGAC--AT--T-G---AAAAATG-----GCTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTG----GAGCATCA------------C----------AT------------G----GATCAATAATTATAATTGT--CAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTACATCCATC----------AT---T-------CA----CAGCA--AATT----TGGT----------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------T-GTGATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCA---AAAAGCAAAGTGG-----ATT-ATACACACAG----AGGTTTCACAGCAAT-----C----------AT---T-------CG----CAGCA--AATT----TT-------------GTTGTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACG--CAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA------------------------------TGATGG-------------------AAA-----------ATCCTTTGA----ACCA---GACTACAAAAGAG-----A-T-AT----GTCGAAAAAGATTTTA------------TTCTA------ATCCAT-------CT----CAGCA--AATT----TCAA--TGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATT--CCGA-------AAA---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 444444444444444444444 11111111111 6666666666666666666666666666666666666666666666666 111111111 3333333333333333333 33333333333333 1111 6666666666666666666666666666666666666666666666 11 1 33333 11 333333333 33333 1 1 1 2222 555555555555555555555 111 1 1111 44444444444 3333333 111111 1 22 1111 55555555555 11 1 7777777777777777 1111 22222 333 999999999999 1 222 1 1 11
lowQualScore : 5555 33 2 33 2 66666 777777777777777777777 9999999999 33333333333 33 7 444 77777 2 8 2 8888 1 3333333333333333333333333333333333333333333333333 44 6666 44 88 777 666 444444444 777777 11 55 0 2222222222222222222 44444444444444 7 1 1 0000 5 2 2 555 66 5 8 1 0 0000000000000000000000000000000000000000000000 1 1 1 44 1 2 22222 6 1 1 7 88 777777777 1 33333 2 3 7 3 8888 888888888888888888888 1 0 1 333 3 3 5 7777 8 77 1 66666666666 3333333 888888 0 0 0 66 1 1 1 22 1 0000 11111111111 1 88 7 3 3333333333333333 44 0 9999 33 1 55555 6 6 2 1 2 4 0 555 666 1 000000000000 1 5 111 1 5 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . ..... ..................... .......... ........... .. . ... ..... . . . .... . ................................................. .. .... .. .. ... ... ......... ...... .. .. . ................... .............. . . . .... . . . ... .. . . . . .............................................. . . . .. . . ..... . . . . .. ......... . ..... . . . . .... ..................... . . . ... . . . .... . .. . ........... ....... ...... . . . .. . . . .. . .... ........... . .. . . ................ .. . .... .. . ..... . . . . . . . ... ... . ............ . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 333333333333333333333 4444444444 66666666666 99 5 777 11111 9 6 7 9999 9 0000000000000000000000000000000000000000000000000 22 5555 22 11 888 444 555555555 999999 99 99 1 6666666666666666666 99999999999999 9 4 0 6666 0 5 2 000 99 0 5 1 8 2222222222222222222222222222222222222222222222 0 0 0 33 0 0 00000 7 0 0 3 33 000000000 0 33333 0 3 3 3 3333 000000000000000000000 0 7 4 444 2 8 8 0000 0 88 0 66666666666 8888888 000000 0 2 2 88 4 4 4 44 0 2222 88888888888 0 33 3 3 7777777777777777 33 7 0000 00 0 55555 0 0 5 0 5 0 7 000 000 0 333333333333 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANTTT-----CCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGT-GCCCATT-AGATGTC---G--AGA-GNTGNCCGGACAAGA-TTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---GC-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAAC-CAGANTGCAAAAGG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTCGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANTTT-----CCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGT-GCCCA---AGATGTC---G--AGA-GNTGNCCGGACAAGA-TTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---GCAAGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCGGACGAGATTTTTCATTCCGACGNTGCAAAGGGCTGTAACTCGGCCAAAAATCACCGAACGCGGANTGCAAAAGG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCT----TGGCTTCA------------C----------A-------T---T-------CA----CAGTA--AGTT----T--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAA-GGGCCT-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCA--AACAGAAGAAGCACAGACAAGCTTTTT-----C-----A-----A-C--ATTTGTGTTA----TA---ACTCAACTACATGTAAAAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATAT---------ATGAGAGTTT-----CCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAACT--TAAGCTGAACATGCGCAGATAAATCTCACATTGATCTTTC-CAGC----AA-GTTTCAGCTTAATGT-GCCCAC--AGATGTC------AGA-GTTCTCCAGACAAGC-TTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAA-GC-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATAC-GACTGCAAAAGGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCA--AG-AGAAGAAGCACAGACAAGGTTCTT-----C-----ATCCC-ATC--ATTGAAAAGGGCTTTA--AAT---GCCCCAAACCATCA-AACCAGAATGTAAT----AGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTA----AGGCTTCA------------C----------A-------T---C-------------CATTA--TGTT----T--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTG----AGGCTTTA------------CATCAATAATTA-------T---T-------CC----CAGTT--AGTT----T--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTCAGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTG----ATGTTTTA------------C----------A-------TCAAT-------CATTATCAGCA--AGTT----T--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC----------------TA-----------------------A-------T---T-------CA----CAGCA--AGTT----T--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATTCTGA-------AAA---TT----CACAGGGCTGT-TACTCGacct
gi|17 : AAATGGATT--ATGCTAAT---TCACAGC----AA-GTTTTGTCATAATGT-GGTTGTT-GGTTGTG---G--AGA-A------GAATGAGA-TTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|18 : tacaacagcatcatctattagcaGTCAAAAATCATTTACC-CAGAATGCAAAAGGGACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTta
gi|18 : AAAATCATTTACCCAGA-------A-----TG----CAAAAGGG-----ACAAGGC-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAATTTCGACCAA--ATTTATCAG-AGAGGTTTC-TGGCCAAGATTTTG-----T-----G-----A-CAGATTC-ACAGA----CA--G-C---GCTAAAAggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : gtca-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTA--AG-AGAAGAAGAGCGGGCACGATTCTT-----C-----A-----caatgttt
gi|19 : AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT--ATTGAAT----TCCATTTGAATGTTTAAG--AGAAGAAGAGCGGGCACGA-TTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATA---AAAAGCAAAATGG-----ATT-ATGCACATCG----AAGCTTTG------------C----------A-------T---TGTTCATGCA----CAGCA--AGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT--AGG-------AGA---T-------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGAT-ATTCA--AG-AGGAGAAGCCAGAACAAGATTCTT-------------------C--ACTCCAAAGA----AAGGGAC---TGTACAACTTAGAT-GATAATTACACAAC----TGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAATTT-----CT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAA-TCGCAAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTTCAGT----AA-GTTTCAGCTCTAT----CTCA---ATATATC---GGAGGA-GTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCA--AG-AAAAGATGCACCGACATGATTCTT-----CATTCAA-----A-C--ATTGGAAAGt
gi|22 : agattGAAAAG---------AT-GCACCGACATGATTCTTCATTCA-A-------ACA---TTG---GAAAGGGGCAT-AACTTGgggcataacttgc
gi|23 : agattcttcagactgatcgtttctatttagtttcagttcctttggcggttcaaATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAAC-CAGATTGCAAAGGG-G----------ATATATGCACAAC
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCA----AGGTTTCATGAT--------C----------A-------T---T-------TG----AAACA--AGTT----T--TGTCAAAATGCGGTCATTGGTTGT---Gtagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCA--AG-AGAAGAAATGCAACCTGGCTTCTTTATTGC-----A-----A-C--ATTGTAAAG
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACC
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AACA----GAA-TG-CAAAAGAGAAATGTGCAACAAGACATCACACTGATCATTC-CAAC----AA-GATTTGGCTAATTCTTACCAA---AGATGTC---T---GA-GATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A--------GCAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCG----AGGTTTCA------------C----------A-------T-----------CG-----ATCA--TTGT----T--TGT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGTCAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCAT---AGA--TCA-----------------------A-------T---T--------G----CTGTA--AGTT----T--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------TTCA--------------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCA--AG----AGAATCCCAGGAAAGATTCTT-----C-----AGTCTGA-C--ATT-GAAAAA----TG--------GCTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTG----GAGCATCA------------C----------A-------T------------G----GATCAATAATTATAAT--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTACATCCATC----------A-------T---T-------CA----CAGCA--AATT----T--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------TG-TGATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCA---AAAAGCAAAGTGG-----A-TTATACACACAG----AGGTTTCA------------C----------AGCAATCAT---T-------CG----CAGCA--AATT----T--TGTT-----------GTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACGCAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA------------------------------TGATGG-------------------AAA-----------ATCCTTTGA----ACCA---GACTACAAAAGAG-----A-T-AT----GTCGAAAAAGATTTTA------------TTCTA------A-------TCCAT-------CT----CAGCA--AATT----T--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATTCCGA-------AAA---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 444444444444444444444 11111111111 6666666666666666666666666666666666666666666666666 111111111 3333333333333333333 33333333333333 1111 5555555555555555555555555555555555555555555555 11 1 33333 11 333333333 33333 1 1 1 2222 555555555555555555555 111 1 1111 333333333333333333333333 111111 1 22 1111 55555555555 11 1 77777777777777777 1111 22222 1 777777777777 1 222 1 1 11
lowQualScore : 5555 33 2 33 2 66666 777777777777777777777 9999999999 33333333333 33 7 444 77777 2 8 2 8888 1 3333333333333333333333333333333333333333333333333 44 6666 44 88 777 666 444444444 777777 11 55 0 2222222222222222222 44444444444444 7 1 1 0000 5 2 2 555 66 5 8 1 0 6666666666666666666666666666666666666666666666 1 1 1 44 1 2 22222 6 1 1 7 88 777777777 1 33333 2 3 7 3 8888 888888888888888888888 1 0 1 333 3 3 5 7777 8 77 1 777777777777777777777777 888888 0 0 0 66 1 1 1 22 1 0000 11111111111 1 88 7 3 99999999999999999 44 0 9999 33 1 55555 1 1 1 1 1 1 3 777777777777 1 5 111 1 5 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . ..... ..................... .......... ........... .. . ... ..... . . . .... . ................................................. .. .... .. .. ... ... ......... ...... .. .. . ................... .............. . . . .... . . . ... .. . . . . .............................................. . . . .. . . ..... . . . . .. ......... . ..... . . . . .... ..................... . . . ... . . . .... . .. . ........................ ...... . . . .. . . . .. . .... ........... . .. . . ................. .. . .... .. . ..... . . . . . . . ............ . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 333333333333333333333 4444444444 66666666666 99 5 777 11111 9 6 7 9999 9 0000000000000000000000000000000000000000000000000 22 5555 22 11 888 444 555555555 999999 99 99 1 6666666666666666666 99999999999999 9 4 0 6666 0 5 2 000 99 0 5 1 8 6666666666666666666666666666666666666666666666 0 0 0 33 0 0 00000 7 0 0 3 33 000000000 0 33333 0 3 3 3 3333 000000000000000000000 0 7 4 444 2 8 8 0000 0 88 0 444444444444444444444444 000000 0 2 2 88 4 4 4 44 0 2222 88888888888 0 33 3 3 77777777777777777 33 7 0000 00 0 55555 0 0 0 0 0 0 3 000000000000 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTGNCCATTAGA-TGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTGCCCATTAGA-TGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCT----TGGCTTCA------------C----------A-------T---T-------CA----CAGTA--AGTT----T--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAA-GGGCCT-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCA--AACAGAAGAAGCACAGACAAGCTTTTT-----C-----A-----A-C--ATTTGTGTTA----TA---ACTCAACTACATGTAAAAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATAT---------ATGAGAGT-----TTCCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAACT--TAAGCTGAACATGCGCAGATAAATCTCACATTGATCTTTC-CAGC----AA-GTTTCAGCTTAATGTGCCCA-CAGA-TGTC------AGA-GTTCTCCAGACAAG-CTTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAA-G-C-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATACGACTGCAAAA-GGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCA--AG-AGAAGAAGCACAGACAAGGTTCTT-----C-----ATCCC-ATC--ATTGAAAAGGGCTTTA--AAT---GCCCCAAACCATCA-AACCAGAATGTAAT----AGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTA----AGGCTTCA------------C----------A-------T---C-------------CATTA--TGTT----T--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTG----AGGCTTTA------------CATCAATAATTA-------T---T-------CC----CAGTT--AGTT----T--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTC-AGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTG----ATGTTTTA------------C----------A-------TCAAT-------CATTATCAGCA--AGTT----T--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC----------------TA-----------------------A-------T---T-------CA----CAGCA--AGTT----T--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATTCTGA-------AAA---TT----CACAGGGCTGT-TACTCGacct
gi|17 : AAATGGATT--ATGCTAAT---TCACAGC----AA-GTTTTGTCATAATGTGGTTGTTGGT-TGTG---G--AGA-A------GAATGAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|18 : tacaacagcatcatctattagcaGTCAAAAATCATTTACCCAGAATGCAAAAGGG-ACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTta
gi|18 : AAAATCATTTACCCAGA-------A-----TG----CAAAAGGG-----ACAAGGC-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAATTTCGACCAA--ATTTATCAG-AGAGGTTTC-TGGCCAAGATTTTG-----T-----G-----A-CAGATTC-ACAGA----CA--G-C---GCTAAAAggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : gtca-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTA--AG-AGAAGAAGAGCGGGCACGATTCTT-----C-----A-----caatgttt
gi|19 : AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT--ATTGAAT---TCCATTTGAATGTTTAAG--AGAAGAAGAGCGGGCACG-ATTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATA---AAAAGCAAAATGG-----ATT-ATGCACATCG----AAGCTTTG------------C----------A-------T---TGTTCATGCA----CAGCA--AGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT--AGG-------AGA---T-------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGAT-ATTCA--AG-AGGAGAAGCCAGAACAAGATTCTT-------------------C--ACTCCAAAGA----AAGGGAC---TGTACAACTTAGAT-GATAATTACACAAC----TGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAAT-----TTCT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAA-TCGCAAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTTCAGT----AA-GTTTCAGCTCTAT---CTCA--ATA-TATC---GGAGGA-GTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCA--AG-AAAAGATGCACCGACATGATTCTT-----CATTCAA-----A-C--ATTGGAAAGt
gi|22 : agattGAAAAG---------AT-GCACCGACATGATTCTTCATTCA-A-------ACA---TTG---GAAAGGGGCAT-AACTTGgggcataacttgc
gi|23 : agattcttcagactgatcgtttctatttagtttcagttcctttggcggttcaaATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAACCAGATTGCAAAG-GG-G----------ATATATGCACAAC
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCA----AGGTTTCATGAT--------C----------A-------T---T-------TG----AAACA--AGTT----T--TGTCAAAATGCGGTCATTGGTTGT---Gtagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCA--AG-AGAAGAAATGCAACCTGGCTTCTTTATTGC-----A-----A-C--ATTGTAAAG
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACC
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AACA----GAA-TG-CAAAAGAGAAATGTGCAACAAGACATCACACTGATCATTC-CAAC----AA-GATTTGGCTAATTCTTACCA-AAGA-TGTC---T---GA-GATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A--------G-CAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCG----AGGTTTCA------------C----------A-------T-----------CG-----ATCA--TTGT----T--TGT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGTCAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCAT---AGA--TCA-----------------------A-------T---T--------G----CTGTA--AGTT----T--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------TTCA--------------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCA--AG----AGAATCCCAGGAAAGATTCTT-----C-----AGTCTGA-C--ATT-GAAAAA----TG--------GCTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTG----GAGCATCA------------C----------A-------T------------G----GATCAATAATTATAAT--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTACATCCATC----------A-------T---T-------CA----CAGCA--AATT----T--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------TG-TGATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCA---AAAAGCAAAGTGG-----A-TTATACACACAG----AGGTTTCA------------C----------AGCAATCAT---T-------CG----CAGCA--AATT----T--TGTT-----------GTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACGCAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA------------------------------TGATGG-------------------AAA-----------ATCCTTTGA----ACCA---GACTACAAAAGAG-----A-T-AT----GTCGAAAAAGATTTTA------------TTCTA------A-------TCCAT-------CT----CAGCA--AATT----T--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATTCCGA-------AAA---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 444444444444444444444 11111111111 6666666666666666666666666666666666666666666666666 111111111 3333333333333333333 33333333333333 1111 5555555555555555555555555555555555555555555555 11 1 33333 11 333333333 33333 1 1 1 2222 555555555555555555555 111 1 1111 1111 222 3333333 111111 1 22 1111 55555555555 11 1 77777777777777777 1111 22222 1 777777777777 1 222 1 1 11
lowQualScore : 5555 33 2 33 2 66666 777777777777777777777 9999999999 33333333333 33 7 444 77777 2 8 2 8888 1 3333333333333333333333333333333333333333333333333 44 6666 44 88 777 666 444444444 777777 11 55 0 2222222222222222222 44444444444444 7 1 1 0000 5 2 2 555 66 5 8 1 0 6666666666666666666666666666666666666666666666 1 1 1 44 1 2 22222 6 1 1 7 88 777777777 1 33333 2 3 7 3 8888 888888888888888888888 1 0 1 333 3 3 5 7777 8 77 222 0000 333 8 3333333 888888 0 0 0 66 1 1 1 22 1 0000 11111111111 1 88 7 3 99999999999999999 44 0 9999 33 1 55555 1 1 1 1 1 1 3 777777777777 1 5 111 1 5 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . ..... ..................... .......... ........... .. . ... ..... . . . .... . ................................................. .. .... .. .. ... ... ......... ...... .. .. . ................... .............. . . . .... . . . ... .. . . . . .............................................. . . . .. . . ..... . . . . .. ......... . ..... . . . . .... ..................... . . . ... . . . .... . .. ... .... ... . ....... ...... . . . .. . . . .. . .... ........... . .. . . ................. .. . .... .. . ..... . . . . . . . ............ . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 333333333333333333333 4444444444 66666666666 99 5 777 11111 9 6 7 9999 9 0000000000000000000000000000000000000000000000000 22 5555 22 11 888 444 555555555 999999 99 99 1 6666666666666666666 99999999999999 9 4 0 6666 0 5 2 000 99 0 5 1 8 6666666666666666666666666666666666666666666666 0 0 0 33 0 0 00000 7 0 0 3 33 000000000 0 33333 0 3 3 3 3333 000000000000000000000 0 7 4 444 2 8 8 0000 0 88 888 0000 666 0 8888888 000000 0 2 2 88 4 4 4 44 0 2222 88888888888 0 33 3 3 77777777777777777 33 7 0000 00 0 55555 0 0 0 0 0 0 3 000000000000 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATCGGA-TGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTGNCCATTAGA-TGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCT----TGGCTTCA------------C----------A-------T---T-------CA----CAGTA--AGTT----T--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAA-GGGCCT-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCA--AACAGAAGAAGCACAGACAAGCTTTTT-----C-----A-----A-C--ATTTGTGTTA----TA---ACTCAACTACATGTAAAAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATAT---------ATGAGAGT-----TTCCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAACT--TAAGCTGAACATGCGCAGATAAATCTCACATTGATCTTTC-CAGC----AA-GTTTCAGCTTAATGTGCCCA-CAGA-TGTC------AGA-GTTCTCCAGACAAG-CTTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAA-G-C-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATACGACTGCAAAA-GGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCA--AG-AGAAGAAGCACAGACAAGGTTCTT-----C-----ATCCC-ATC--ATTGAAAAGGGCTTTA--AAT---GCCCCAAACCATCA-AACCAGAATGTAAT----AGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTA----AGGCTTCA------------C----------A-------T---C-------------CATTA--TGTT----T--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTG----AGGCTTTA------------CATCAATAATTA-------T---T-------CC----CAGTT--AGTT----T--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTC-AGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTG----ATGTTTTA------------C----------A-------TCAAT-------CATTATCAGCA--AGTT----T--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC----------------TA-----------------------A-------T---T-------CA----CAGCA--AGTT----T--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATTCTGA-------AAA---TT----CACAGGGCTGT-TACTCGacct
gi|17 : AAATGGATT--ATGCTAAT---TCACAGC----AA-GTTTTGTCATAATGTGGTTGTTGGT-TGTG---G--AGA-A------GAATGAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|18 : tacaacagcatcatctattagcaGTCAAAAATCATTTACCCAGAATGCAAAAGGG-ACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTta
gi|18 : AAAATCATTTACCCAGA-------A-----TG----CAAAAGGG-----ACAAGGC-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAATTTCGACCAA--ATTTATCAG-AGAGGTTTC-TGGCCAAGATTTTG-----T-----G-----A-CAGATTC-ACAGA----CA--G-C---GCTAAAAggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : gtca-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTA--AG-AGAAGAAGAGCGGGCACGATTCTT-----C-----A-----caatgttt
gi|19 : AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT--ATTGAAT---TCCATTTGAATGTTTAAG--AGAAGAAGAGCGGGCACG-ATTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATA---AAAAGCAAAATGG-----ATT-ATGCACATCG----AAGCTTTG------------C----------A-------T---TGTTCATGCA----CAGCA--AGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT--AGG-------AGA---T-------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGAT-ATTCA--AG-AGGAGAAGCCAGAACAAGATTCTT-------------------C--ACTCCAAAGA----AAGGGAC---TGTACAACTTAGAT-GATAATTACACAAC----TGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAAT-----TTCT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAA-TCGCAAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTTCAGT----AA-GTTTCAGCTC--TATCTCAAT---A-TATC---GGAGGA-GTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCA--AG-AAAAGATGCACCGACATGATTCTT-----CATTCAA-----A-C--ATTGGAAAGt
gi|22 : agattGAAAAG---------AT-GCACCGACATGATTCTTCATTCA-A-------ACA---TTG---GAAAGGGGCAT-AACTTGgggcataacttgc
gi|23 : agattcttcagactgatcgtttctatttagtttcagttcctttggcggttcaaATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAACCAGATTGCAAAG-GG-G----------ATATATGCACAAC
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCA----AGGTTTCATGAT--------C----------A-------T---T-------TG----AAACA--AGTT----T--TGTCAAAATGCGGTCATTGGTTGT---Gtagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCA--AG-AGAAGAAATGCAACCTGGCTTCTTTATTGC-----A-----A-C--ATTGTAAAG
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACC
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AACA----GAA-TG-CAAAAGAGAAATGTGCAACAAGACATCACACTGATCATTC-CAAC----AA-GATTTGGCTAATTCTTACCA-AAGA-TGTC---T---GA-GATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A--------G-CAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCG----AGGTTTCA------------C----------A-------T-----------CG-----ATCA--TTGT----T--TGT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGTCAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCAT---AGA--TCA-----------------------A-------T---T--------G----CTGTA--AGTT----T--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------TTCA--------------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCA--AG----AGAATCCCAGGAAAGATTCTT-----C-----AGTCTGA-C--ATT-GAAAAA----TG--------GCTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTG----GAGCATCA------------C----------A-------T------------G----GATCAATAATTATAAT--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTACATCCATC----------A-------T---T-------CA----CAGCA--AATT----T--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------TG-TGATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCA---AAAAGCAAAGTGG-----A-TTATACACACAG----AGGTTTCA------------C----------AGCAATCAT---T-------CG----CAGCA--AATT----T--TGTT-----------GTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACGCAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA------------------------------TGATGG-------------------AAA-----------ATCCTTTGA----ACCA---GACTACAAAAGAG-----A-T-AT----GTCGAAAAAGATTTTA------------TTCTA------A-------TCCAT-------CT----CAGCA--AATT----T--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATTCCGA-------AAA---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 444444444444444444444 11111111111 6666666666666666666666666666666666666666666666666 111111111 3333333333333333333 33333333333333 1111 5555555555555555555555555555555555555555555555 11 1 33333 11 333333333 33333 1 1 1 2222 555555555555555555555 111 1 1111 3333 3333333 111111 1 22 1111 55555555555 11 1 77777777777777777 1111 22222 1 777777777777 1 222 1 1 11
lowQualScore : 5555 33 2 33 2 66666 777777777777777777777 9999999999 33333333333 33 7 444 77777 2 8 2 8888 1 3333333333333333333333333333333333333333333333333 44 6666 44 88 777 666 444444444 777777 11 55 0 2222222222222222222 44444444444444 7 1 1 0000 5 2 2 555 66 5 8 1 0 6666666666666666666666666666666666666666666666 1 1 1 44 1 2 22222 6 1 1 7 88 777777777 1 33333 2 3 7 3 8888 888888888888888888888 1 0 1 333 3 3 5 7777 8 77 222 8888 1111 3333333 888888 0 0 0 66 1 1 1 22 1 0000 11111111111 1 88 7 3 99999999999999999 44 0 9999 33 1 55555 1 1 1 1 1 1 3 777777777777 1 5 111 1 5 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . ..... ..................... .......... ........... .. . ... ..... . . . .... . ................................................. .. .... .. .. ... ... ......... ...... .. .. . ................... .............. . . . .... . . . ... .. . . . . .............................................. . . . .. . . ..... . . . . .. ......... . ..... . . . . .... ..................... . . . ... . . . .... . .. ... .... .... ....... ...... . . . .. . . . .. . .... ........... . .. . . ................. .. . .... .. . ..... . . . . . . . ............ . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 333333333333333333333 4444444444 66666666666 99 5 777 11111 9 6 7 9999 9 0000000000000000000000000000000000000000000000000 22 5555 22 11 888 444 555555555 999999 99 99 1 6666666666666666666 99999999999999 9 4 0 6666 0 5 2 000 99 0 5 1 8 6666666666666666666666666666666666666666666666 0 0 0 33 0 0 00000 7 0 0 3 33 000000000 0 33333 0 3 3 3 3333 000000000000000000000 0 7 4 444 2 8 8 0000 0 88 888 8888 4444 8888888 000000 0 2 2 88 4 4 4 44 0 2222 88888888888 0 33 3 3 77777777777777777 33 7 0000 00 0 55555 0 0 0 0 0 0 3 000000000000 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATC-GGATGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATC-GGATGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCT----TGGCTTCA------------C----------A-------T---T-------CA----CAGTA--AGTT----T--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAA-GGGCCT-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCA--AACAGAAGAAGCACAGACAAGCTTTTT-----C-----A-----A-C--ATTTGTGTTA----TA---ACTCAACTACATGTAAAAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATAT---------ATGAGAGT-----TTCCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAACT--TAAGCTGAACATGCGCAGATAAATCTCACATTGATCTTTC-CAGC----AA-GTTTCAGCTTAATGTGCCCA-C-AGATGTC------AGA-GTTCTCCAGACAAG-CTTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAA-G-C-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATACGACTGCAAAA-GGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCA--AG-AGAAGAAGCACAGACAAGGTTCTT-----C-----ATCCC-ATC--ATTGAAAAGGGCTTTA--AAT---GCCCCAAACCATCA-AACCAGAATGTAAT----AGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTA----AGGCTTCA------------C----------A-------T---C-------------CATTA--TGTT----T--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTG----AGGCTTTA------------CATCAATAATTA-------T---T-------CC----CAGTT--AGTT----T--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTC-AGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTG----ATGTTTTA------------C----------A-------TCAAT-------CATTATCAGCA--AGTT----T--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC----------------TA-----------------------A-------T---T-------CA----CAGCA--AGTT----T--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATTCTGA-------AAA---TT----CACAGGGCTGT-TACTCGacct
gi|17 : AAATGGATT--ATGCTAAT---TCACAGC----AA-GTTTTGTCATAATGTGGTTGTT-GGTTGTG---G--AGA-A------GAATGAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|18 : tacaacagcatcatctattagcaGTCAAAAATCATTTACCCAGAATGCAAAAGGG-ACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTta
gi|18 : AAAATCATTTACCCAGA-------A-----TG----CAAAAGGG-----ACAAGGC-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAATTTCGACCAA--ATTTATCAG-AGAGGTTTC-TGGCCAAGATTTTG-----T-----G-----A-CAGATTC-ACAGA----CA--G-C---GCTAAAAggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : gtca-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTA--AG-AGAAGAAGAGCGGGCACGATTCTT-----C-----A-----caatgttt
gi|19 : AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT--ATTGAAT---TCCATTTGAATGTTTAAG--AGAAGAAGAGCGGGCACG-ATTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATA---AAAAGCAAAATGG-----ATT-ATGCACATCG----AAGCTTTG------------C----------A-------T---TGTTCATGCA----CAGCA--AGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT--AGG-------AGA---T-------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGAT-ATTCA--AG-AGGAGAAGCCAGAACAAGATTCTT-------------------C--ACTCCAAAGA----AAGGGAC---TGTACAACTTAGAT-GATAATTACACAAC----TGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAAT-----TTCT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAA-TCGCAAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTTCAGT----AA-GTTTCAGCTC--TATCTCAAT----ATATC---GGAGGA-GTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCA--AG-AAAAGATGCACCGACATGATTCTT-----CATTCAA-----A-C--ATTGGAAAGt
gi|22 : agattGAAAAG---------AT-GCACCGACATGATTCTTCATTCA-A-------ACA---TTG---GAAAGGGGCAT-AACTTGgggcataacttgc
gi|23 : agattcttcagactgatcgtttctatttagtttcagttcctttggcggttcaaATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAACCAGATTGCAAAG-GG-G----------ATATATGCACAAC
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCA----AGGTTTCATGAT--------C----------A-------T---T-------TG----AAACA--AGTT----T--TGTCAAAATGCGGTCATTGGTTGT---Gtagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCA--AG-AGAAGAAATGCAACCTGGCTTCTTTATTGC-----A-----A-C--ATTGTAAAG
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACC
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AACA----GAA-TG-CAAAAGAGAAATGTGCAACAAGACATCACACTGATCATTC-CAAC----AA-GATTTGGCTAATTCTTACCA-A-AGATGTC---T---GA-GATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A--------G-CAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCG----AGGTTTCA------------C----------A-------T-----------CG-----ATCA--TTGT----T--TGT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGTCAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCAT---AGA--TCA-----------------------A-------T---T--------G----CTGTA--AGTT----T--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------TTCA--------------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCA--AG----AGAATCCCAGGAAAGATTCTT-----C-----AGTCTGA-C--ATT-GAAAAA----TG--------GCTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTG----GAGCATCA------------C----------A-------T------------G----GATCAATAATTATAAT--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTACATCCATC----------A-------T---T-------CA----CAGCA--AATT----T--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------TG-TGATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCA---AAAAGCAAAGTGG-----A-TTATACACACAG----AGGTTTCA------------C----------AGCAATCAT---T-------CG----CAGCA--AATT----T--TGTT-----------GTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACGCAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA------------------------------TGATGG-------------------AAA-----------ATCCTTTGA----ACCA---GACTACAAAAGAG-----A-T-AT----GTCGAAAAAGATTTTA------------TTCTA------A-------TCCAT-------CT----CAGCA--AATT----T--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATTCCGA-------AAA---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 444444444444444444444 11111111111 6666666666666666666666666666666666666666666666666 111111111 3333333333333333333 33333333333333 1111 5555555555555555555555555555555555555555555555 11 1 33333 11 333333333 33333 1 1 1 2222 555555555555555555555 111 1 1111 3333 3333333 111111 1 22 1111 55555555555 11 1 77777777777777777 1111 22222 1 777777777777 1 222 1 1 11
lowQualScore : 5555 33 2 33 2 66666 777777777777777777777 9999999999 33333333333 33 7 444 77777 2 8 2 8888 1 3333333333333333333333333333333333333333333333333 44 6666 44 88 777 666 444444444 777777 11 55 0 2222222222222222222 44444444444444 7 1 1 0000 5 2 2 555 66 5 8 1 0 6666666666666666666666666666666666666666666666 1 1 1 44 1 2 22222 6 1 1 7 88 777777777 1 33333 2 3 7 3 8888 888888888888888888888 1 0 1 333 3 3 5 7777 8 77 222 8888 1111 3333333 888888 0 0 0 66 1 1 1 22 1 0000 11111111111 1 88 7 3 99999999999999999 44 0 9999 33 1 55555 1 1 1 1 1 1 3 777777777777 1 5 111 1 5 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . ..... ..................... .......... ........... .. . ... ..... . . . .... . ................................................. .. .... .. .. ... ... ......... ...... .. .. . ................... .............. . . . .... . . . ... .. . . . . .............................................. . . . .. . . ..... . . . . .. ......... . ..... . . . . .... ..................... . . . ... . . . .... . .. ... .... .... ....... ...... . . . .. . . . .. . .... ........... . .. . . ................. .. . .... .. . ..... . . . . . . . ............ . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 77777 333333333333333333333 4444444444 66666666666 99 5 777 11111 9 6 7 9999 9 0000000000000000000000000000000000000000000000000 22 5555 22 11 888 444 555555555 999999 99 99 1 6666666666666666666 99999999999999 9 4 0 6666 0 5 2 000 99 0 5 1 8 6666666666666666666666666666666666666666666666 0 0 0 33 0 0 00000 7 0 0 3 33 000000000 0 33333 0 3 3 3 3333 000000000000000000000 0 7 4 444 2 8 8 0000 0 88 888 8888 4444 8888888 000000 0 2 2 88 4 4 4 44 0 2222 88888888888 0 33 3 3 77777777777777777 33 7 0000 00 0 55555 0 0 0 0 0 0 3 000000000000 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATC-GGATGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATC-GGATGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGTTTTA-----GGACTG----------------TGGTGATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAG---AAAATCAAAGTGG-----A-T-ATGAACATCT----TGGCTTCA------------C----------A-------T---T-------CA----CAGTA--AGTT----T--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAA-GGGCCT-TACTCTAA-AACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCA--AACAGAAGAAGCACAGACAAGCTTTTT-----C-----A-----A-C--ATTTGTGTTA----TA---ACTCAACTACATGTAAAAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATAT---------ATGAGAGT-----TTCCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAACT--TAAGCTGAACATGCGCAGATAAATCTCACATTGATCTTTC-CAGC----AA-GTTTCAGCTTAATGTGCCCA-C-AGATGTC------AGA-GTTCTCCAGACAAG-CTTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAA-G-C-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATACGACTGCAAAA-GGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AA-AA--AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCA--AG-AGAAGAAGCACAGACAAGGTTCTT-----C-----ATCCC-ATC--ATTGAAAAGGGCTTTA--AAT---GCCCCAAACCATCA-AACCAGAATGTAAT----AGGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGTTTCA-----GGAC---------------------TAAT-GAACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTT---AAAAGCAAA-TTG-----A-T-ATTCACATTA----AGGCTTCA------------C----------A-------T---C-------------CATTA--TGTT----T--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGTTTTG-----GGATTG------------------GTGATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCA---AAAAACAAAGTGG-----A-T-ATGCATCTTG----AGGCTTTA------------CATCAATAATTA-------T---T-------CC----CAGTT--AGTT----T--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTC-AGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-GG----TG-----GGACTGAAATGGCACCGAAAACTGGTGTTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCG---AAA-TCAAAGTGG-----A-C-ATGCACATTG----ATGTTTTA------------C----------A-------TCAAT-------CATTATCAGCA--AGTT----T--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGCTTTATGCATAGACTGA---------------TGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTG---AGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG---TG-----GGAC------------------TGGTGATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCG---AAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacTACAACAGCATCATCTATTAGCAAAATGG-----A-TTATGC----------------TA-----------------------A-------T---T-------CA----CAGCA--AGTT----T--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATTCTGA-------AAA---TT----CACAGGGCTGT-TACTCGacct
gi|17 : AAATGGATT--ATGCTAAT---TCACAGC----AA-GTTTTGTCATAATGTGGTTGTT-GGTTGTG---G--AGA-A------GAATGAG-ATTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Agccaaagatcaccaaatgggaatgctaaaaggata
gi|18 : tacaacagcatcatctattagcaGTCAAAAATCATTTACCCAGAATGCAAAAGGG-ACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTta
gi|18 : AAAATCATTTACCCAGA-------A-----TG----CAAAAGGG-----ACAAGGC-AACTAGATCTCACACTGTTCCTTCCCTGC----AT-GTTTCAGCTAATTTCGACCAA--ATTTATCAG-AGAGGTTTC-TGGCCAAGATTTTG-----T-----G-----A-CAGATTC-ACAGA----CA--G-C---GCTAAAAggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|19 : gtca-AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTA--AG-AGAAGAAGAGCGGGCACGATTCTT-----C-----A-----caatgttt
gi|19 : AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT--ATTGAAT---TCCATTTGAATGTTTAAG--AGAAGAAGAGCGGGCACG-ATTCTTCATTCCTGCTTTGAAAAGGAGCGTAATTCGGCCGAAAATCATAAAAC-ttcctgctttgaaaaggagcgtaattcggccgaaaatcataaaactggtatttcatattg
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGCTTTA-----AAACTG------------------GTGTTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATA---AAAAGCAAAATGG-----ATT-ATGCACATCG----AAGCTTTG------------C----------A-------T---TGTTCATGCA----CAGCA--AGTT----TTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT--AGG-------AGA---T-------GAGGG------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGAT-ATTCA--AG-AGGAGAAGCCAGAACAAGATTCTT-------------------C--ACTCCAAAGA----AAGGGAC---TGTACAACTTAGAT-GATAATTACACAAC----TGGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAtggtatttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAAT-----TTCT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAA-TCGCAAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTTCAGT----AA-GTTTCAGCTC--TATCTCAAT----ATATC---GGAGGA-GTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGTTTTA-----GGACTG----------------CAAAG-TGAGGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCA--AG-AAAAGATGCACCGACATGATTCTT-----CATTCAA-----A-C--ATTGGAAAGt
gi|22 : agattGAAAAG---------AT-GCACCGACATGATTCTTCATTCA-A-------ACA---TTG---GAAAGGGGCAT-AACTTGgggcataacttgc
gi|23 : agattcttcagactgatcgtttctatttagtttcagttcctttggcggttcaaATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAACCAGATTGCAAAG-GG-G----------ATATATGCACAAC
gi|25 : G---AAAAACAAAGTGG-----A-T-ATACACGTCA----AGGTTTCATGAT--------C----------A-------T---T-------TG----AAACA--AGTT----T--TGTCAAAATGCGGTCATTGGTTGT---Gtagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCA--AG-AGAAGAAATGCAACCTGGCTTCTTTATTGC-----A-----A-C--ATTGTAAAG
gi|27 : CCGGT-GAGATTTA-----GCATTG------------------ATGATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACC
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGTTT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AACA----GAA-TG-CAAAAGAGAAATGTGCAACAAGACATCACACTGATCATTC-CAAC----AA-GATTTGGCTAATTCTTACCA-A-AGATGTC---T---GA-GATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A--------G-CAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGTTTTA-----GGACTG------------------GTGACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCG---CTACGCAGAGTGG-----A-A-ATGCACATCG----AGGTTTCA------------C----------A-------T-----------CG-----ATCA--TTGT----T--TGT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGTCAAACATTATCAAACACTTAGGCCAAAGGGATGTGTGC----A-AA-TAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGTTTTA-----GGAC------------------AGATGATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTG---AAGGGCAAAGTGG-----A-TAATGCACGTCAT---AGA--TCA-----------------------A-------T---T--------G----CTGTA--AGTT----T--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG---------A-----------------TTCA--------------------------AAAGGAGGGA-TACATGAACAACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCA--AG----AGAATCCCAGGAAAGATTCTT-----C-----AGTCTGA-C--ATT-GAAAAA----TG--------GCTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGCTTTA-----GGAC------------------TAGTAATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAG---AAAAGCGAAGTGG-----A-T-ATACTCACTG----GAGCATCA------------C----------A-------T------------G----GATCAATAATTATAAT--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGTTTTA-----TGACTA------------------GTGA-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCA---AAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTACATCCATC----------A-------T---T-------CA----CAGCA--AATT----T--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGTTTAA-----CAACT-----------------TG-TGATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCA---AAAAGCAAAGTGG-----A-TTATACACACAG----AGGTTTCA------------C----------AGCAATCAT---T-------CG----CAGCA--AATT----T--TGTT-----------GTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACGCAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGTTTTA------------------------------TGATGG-------------------AAA-----------ATCCTTTGA----ACCA---GACTACAAAAGAG-----A-T-AT----GTCGAAAAAGATTTTA------------TTCTA------A-------TCCAT-------CT----CAGCA--AATT----T--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATTCCGA-------AAA---T
blockSeqs : ACTG AA A AC T TGCAT TGAAATGGCACCGAAAACTGG ATGGCACC CTGGTGGTAGG TC A TCT ATATT T T A AAAA C CTTTACATCCATCATTCA AT ATAA TC TA ATG TAA CCTTCAGAT TGCAAA CA TT CATTATCAAACACTTAGGC GGGATACATGAAC C G C TCTA C G A TGG TC . A A CATCCCATCATTGAAAAGGGCTTTAAAT A C T A G G A G C C T CA GTCCCTCAA A TTAAA G . A . AATG CCATCGAACCGAATCG T T TTT T A A TCTA C TG TAA GTGG TTTG TAAGA AGAAGA A AA A T C CC T GCT AAAT T CA T . TCTAACCTTCCTGGTC AA CTG TT T . C T C T T A G ACAAGGC T G . T T A T T A TT G GT
blockSeqs : . . . . . . TGATGT TGA . . T . . . A C T C CATCAATAATTATTCC . . . CA GTG . . GCACT TG CC ACATTG ATGTGTGCA C C C . . T A ATG . . G G CAGTCTGACATTGAAAAATG C T G G T A T G T T . C . . . . . . AAACAGAATG A T CAT A T A . . CA GAA ATCT TTG GGAG GTTGT . CT T T C TG G AC GG A . T . AGCA CA GT GA G G T . G C
blockSeqs : . . . . . . TGCAA A . . T . . . T A . T CATCAATCATTAT . . . CA ATA . . GCAAG CA TT AAATT GACAAGGC C A A . . G T CGG . . C G TGACAGATTCACAGACAGC C A TT A A T . . TG AAT CTTA AA GA GATAG . AA G A A C A GA
blockSeqs : . . . . . . TGG A . . T . . . . G . C CATTGTTCATGCA . . . CA GCG . . GCACC CC GT GATTT . . G A . . G A TGG . . A G CACTCCAAAGAAAGGGAC A . C . . . . . C T T T A A T T .
blockSeqs : . . . . . . TGG A . . C . . . . A . T CAGCAATCATTCG . . . CA ATA . . GCATG CA CG AGAT . G G . . T A TGG . . G C
blockSeqs : . . . . . . TGG A . . C . . . . G . T TTCTAATCCATCT . . . CA AAG . . GCATG CA TT ATG . G A . . G G TA . . C A
blockSeqs : . . . . . . TGA A . . C . . . . A . C TGATCATTTG . . . TG GGG . . TCACG A T . . C . . . . A . . . A
blockSeqs : . . . . . . TGG A . . T . . . . G . C ATTCA . . . G TCA . . G T .
blockSeqs : . . . . . . AGA A . . T . . . . A . T CATCG . . . T AT . . . .
blockSeqs : . . . . . . TAG A . . T . . . . A . T CATC . . . . G . . .
blockSeqs : . . . . . . TAG A . . T . . . . A . . ATTG . . . . .
blockSeqs : . . . . . . TTG . . . C . . . . G . . CATG . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : TGG****************** CATATCATTCG************************************** ACGTGGC******* TGG CANTCCGACGAAAAGGC***************************** TG** G****** **
originalCons : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTG----------------TGGTGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCA------------C----------A-------T---T-------CG----CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGGCGT-TACTCGAA-AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTT-----C-----A-----A-C--ATTNGAAAGA----TA--GAC---GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATC-GGATGTC---G--AGA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAAC-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
finalCons : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGTTTTA-----GGACTGG------------------TGATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCG---AAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGGCTTCACATATCATTCG--------------------------------------CAGCA--AGTT----T--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGGACGTGGC-------AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCA--AG-AGAAGAAGCGCGGACAAGATTCTTCANTCCGACGAAAAGGC-----------------------------GCTACAANTNANAA-NATCANAACGCAAC----CGGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANT-----TTCCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGC----AA-GTTTCGGCTNAATGTNNCCATG--GATGTCG------GA-GNTGNCCGGACAAG-ATTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAA--ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC---G-C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT
Alignments
lowQualScore : 111111111111111 11111111111 3333333 1111111111111111 3333333333333333333 777777777777777 1111 5555555555555555555555555555 22222222 111 22222 11 333333333 33333 1 1 1 2222 555555555555555555555 2222 2 222 22222 1 33 1111 55555555555 11 1 77777777777777777 1111 22222 1 777777777777 1 222 1 1 11
lowQualScore : 5555 33 2 33 2 5555 555555555555555 9999 444 1 9999999999 33333333333 33 8 77777 6 3 1 6666 88888 44 8888888 99 44 7 777 666 8888888888888888 55 0 2 1 1111111111111111111 333333333333333 1 2222 5 0 3 0 5 4 2 0 888 3333333333333333333333333333 1 1 44444444 1 999 55555 8 1 1 7 88 777777777 1 33333 2 3 7 3 8888 888888888888888888888 1 0 66 6666 22 77 2 777 0 22 0 111 00000 1 44444 3 3 0 77 4 2 0 1 0 77 1 0000 11111111111 1 88 7 3 99999999999999999 44 0 9999 33 1 55555 1 1 1 1 1 1 3 777777777777 1 5 111 1 5 1 1 1 1 22 5 88
lowQualScore : .... .. . .. . .... ............... .... ... . .......... ........... .. . ..... . . . .... ..... .. ....... .. .. . ... ... ................ .. . . . ................... ............... . .... . . . . . . . . ... ............................ . . ........ . ... ..... . . . . .. ......... . ..... . . . . .... ..................... . . .. .... .. .. . ... . .. . ... ..... . ..... . . . .. . . . . . .. . .... ........... . .. . . ................. .. . .... .. . ..... . . . . . . . ............ . . ... . . . . . . .. . ..
lowQualScore : 3333 44 5 44 4 3333 333333333333333 3333 777 8 4444444444 66666666666 99 7 77777 2 1 8 5555 33333 66 4444444 88 22 2 888 444 8888888888888888 33 2 0 4 8888888888888888888 222222222222222 0 1111 7 7 9 7 7 0 7 3 999 6666666666666666666666666666 0 0 00000000 0 555 55555 8 0 0 3 33 000000000 0 33333 0 3 3 3 3333 000000000000000000000 0 7 55 0000 22 00 0 888 2 00 2 888 22222 0 22222 3 7 7 33 2 0 2 2 2 55 0 2222 88888888888 0 33 3 3 77777777777777777 33 7 0000 00 0 55555 0 0 0 0 0 0 3 000000000000 0 0 000 0 5 0 0 0 0 00 0 00
consensus : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGT----TTTA-----GG--------ACTG----GTG---ATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCGAAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGG-----CTTCA--CATCG---ATCATTCGCAGCAAGTTT--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGG--ACGTG-GC-----AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCAAG-AGAAGAAGCGCGGACAAGATTCTTCAT--TCCGACATTG--AAAAGG--------NG-CTACAACTCA---GAAA-ATCANAACGCAACC----GGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANTTT-----CCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAANNAGATNTCACGCTGATCTTTC-CAGCAAGTTTCGGCTTAATGTNNCCGC-GGATGTC---GGAGNTGNCCGGACGAGA-TTTTTNATTCCGAAAATACAAAGGGCTGTTACTCGGTCAAAAATCACCGAAT-ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC--G--C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
Reference ( family-2541 ) : AATACAATTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAACTGGC-GAGT----TTTA-----GG--------ACTG----GTG---ATGGGGCTGCA--A-------GAAAA-----------A--CTGCAACGGCACCGAAAAGCAAAGTGG-----A-T-ATGCACGTCG----AGG-----CTTCA--CAT-----ATCATTCGCAGCAAGTTT--TGTCAAAACGNGGTCGTTGGTTGT---GGAGAAG---------AA-GCACGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGG--ACGTG-GC-----AACTAGGCTTCAGGCTGATCNTTCCCAGC----AA-GTTTCAGTGAATTCCAACTGATGGTTCAAG-AGAAGAAGCGCGGACAAGATTCTTCAN--TCCGAC---G--AAAAGG--------CG-CTACAANTNA---NAAN-ATCANAACGCAACC----GGGATATACACAACTAGATTTNATACTGATCNTTCTTGC--AGCAAGTTTCATTGAAATATGTCCCTCAAACGAGANTTT-----CCGAAAATGCAAAGGGCC-TTAT-ACTCAGT----CAATAACCA---AACA---CGAA-T--CAAAAGAGANATGCGCAACTAGATTTCACGCTGATCNTTCACAGCAAGTTTCGGCTNAATGTNNCCAT-GGATGTC---GGAGNTGNCCGGACAAGA-TTTTTCATTCCGACGATGCAAAGGGCCGTTACTCGGTCAAAAATCATCGAA--ANAAC-GC-AAAAGG--AAAT---GATNTG--CAACTAGAC-TTCAC----ACCTTC--G--C-AGTTTCGGCTAAATCTGACCACAGATGTCGGAGTTCTCCG-GACAGGTCGNCGNGATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGCTTTTNATTCCGGCGNTGCAAAGGNCTGCANCTCGGTCAAAAATCATTNAACCAGANTGCAAAA-GG-ACA--G----CAAATATGCANCACACTGTTCACACTTCCCNGCATGTTTCGGCTNANTNCGACCANANNTGTCAGAGAGGTTTCT
gi|1 : AATACATTTGTCA----GAAT--TATCGAAAA-TGTTA--TTGTAAATGTTCAAAACTGCC-GAGT----TTTA-----GG--------ACTGTG--GTG---ATGGGTCTGCA--A-------GAAAA-----------A--CTGCAAAGGCACAGAAAATCAAAGTGG-----A-T-ATGAACATCT----TGG-----CTTCA--CAT----------TCACAGTAAGTTT--TGTCAAAACAAGGTCGTTGGTTAT---GGAGAAG---------AA-GCATGGGCAAGATTTTTCATTCAGA-------AAA---TT----CAAAGGG--CCTTA--CTCTAAAACTAGACCTCAGGTTAATTCTTCCCAGC----AA-GTTTCGGTGAATTCTAACTGATG--CCAAACAGAAGAAGCACAGACAAGCTTTTTCAACATTTG-T---GTTATAACT--------CAACTACATGTAA---AAATCATCAAATC-CAACCTCTCAG----TACACAACCAGACTGAATACTACTCATTC--GC--AGCATGTTTCATTAAAATATAT---------GAGAGTTT-----CCAAAAATGCAAAGGGCCATCATCACTCAGT----CAATAATTA---AATAAGTTGAACT--TAAGCTGAACATGCGCAGATAAATCTCACATTGATCTTTC-CAGCAAGTTTCAGCTTAATGTGCCCAC-AGATGTC---AGAGTTCTCCAGACAAGC-TTTTTAATTCTGACGGTGCAAAGGGCTGCAACTCGGTCAAATATTACTGAAT-ACAACTGC-GAAAGGTAAAATTTAAATGTG--CAAC-AAACGTTCAC----ACTTTTAAG--C-AGTTTTGGTTTAATGTGCCCACAGATGTCAGAGTTCTCCA-GACANNNNNNNNNNATGTGCCCACAGATGTCAGAGTTCTCCAGACAAGGTTTTTAATTCTGGCGGTGCAAAGGGCTGCAACTTAGTCAAATATTACTAAATACGACTGCAAAA-GGTACAT-GAATTTAAATATGCAACACACT-TTCACATTTTCCAGCA-GTTTTGGCTTAATGTGACCACAGATGTCA-AGAG--TTCT
gi|10 : AGACTTCAGACTGACCCTTTCAAGC----AA-GTTTCAGTGAATTCCAAC-AATGGTTCAAG-AGAAGAAGCACAGACAAGGTTCTTCAT--CCCATCATTG--AAAAGGGCTTTAAATG-CCCCAAACCA---TCAA-ACCAGAATGTAATA----GGGATATACACAACTAGATTTCATTCTGA
gi|11 : atgcaaaaggaatatactttaacaagaaaaaaaaATACATTTGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTTATGTTCAAAACTGTC-GAGT----TTCA-----GG--------ACTA----ATG---A----ACTGCA--A-------GAGAA-----------A--CTGCAAAAGCACTTAAAAGCAAA-TTG-----A-T-ATTCACATTA----AGG-----CTTCA--CAT------CCATT------ATGTTT--TGTTAAAACATGaattggaatattggttcaagagaaaaaaa
gi|12 : ataccaaccataatttaatatgaactagattctttttttcgtttgaaaaactatgttccctgatcATACAAACGTGAACTGGAAT--TATCATAAT-TGTTA--TTGTTAATCTTCAAAACTGAT-GAGT----TTTG-----GG--------ATTG----GTG---ATTGGACTGTC--A-------TAAAA-----------A--CTACAATAGCACCAAAAAACAAAGTGG-----A-T-ATGCATCTTG----AGG-----CTTTA--CATCAATAATTATTCCCAGTTAGTTT--TGTCAAAGTAT-GTCGTTGGTTGT---TGAGAAA---------AA-GCACTAGCAA
gi|13 : ATACAAAGGACTGTTACTCAATCAATAATAATCAAACCATAAC-AC-AAAAG---AAAT----ATTTG--CAACTAGAC-TTCACTCTAACCTTCCTGGTC-AGTTTAAGCCAAATCTGACCACAGATACAGGAGTTCTCTG-GATAAGTTTTTGTGATGt
gi|14 : ATACAATTGTGA----GATT--TATCTTAA-----TA--TTGTAAATATTCAAAAATGGT-G-GTGGGACTGAAAT--GGCACCGAAAACTG----GTG---TTGGGACTGAA--ATGGCACCGAAAACTGGTGGTAGGA--CTGCAATGGCACCGAAA-TCAAAGTGG-----A-C-ATGCACATTG----ATG-----TTTTA--CATCA---ATCATTATCAGCAAGTTT--gatggacagacagaaagcacaaaactatatgtctcgaggggaagacaaaatgacctaatt
gi|15 : ATACAATTTTGA----GAAT--TTTCTTAAAATGTTG--TTTTT--T-TTCAAAACTGGG-GAGC----TTTATGCATAG--------ACTG----ATGTCTGTCTGGCTACA----------GAAAA-----------A--CTGCAATGGCACTGAGGAGCAAA
gi|16 : gtatcaatctaatttaattcaactagaaatgttttttcagcaaaaaaataagtctccccttcTACATTTGTGA----GAAT--TATCTTCAA-TGTTA--TTGTTAATGTTTAAAACTGACTAAG-------TG-----GG--------ACTG----GTG---ATGGGGCTGCATGA-------AAAAA-----------A--CTGCCACGAGACCGAAAAGTAAAGCAAATATTA-T-ATGCACGTCA----A
gi|17 : cagaatttgtcttgtgggggaaatattacgtgcccccctacAAATGGATT--ATGCTAAT---TCACAGCAAGTTTTGTCATAATGTGGTTGTTGGTTGT----GGAGAAGA----ATGAGA-TTTTTCATTCTGAAAATTCACAGGGCTGTTACTCGGCCAAAGATCACCAAATGGGAAT-GCTAAAAGG--Aacct
gi|17 : tacaacagcatcatctattagcaATTCACAGCAAGTTT--TGTCATAATGTGGTTGTTGGTTGT---GGAGAAG---------AA--------TGAGATTTTTCATTCTGA-------AAA---TT----CACAGGG--ta
gi|18 : tacaacagcatcatctattagcaaaatggattatgctaGTCAAAAATCATTTACCCAGAATGCAAAAGGG-ACAAGG----CAACTAGATCTCACACTGTTC---CTTCCCTGCATGTTTCAGCTAATTTCGACCAAATTTATCAGAGAGGTTTCTctgttactcggccaaagatcaccaaatgggaatgctaaaaggata
gi|19 : -----AACTAGGTTTCAAGCTGATCATTCACAGTTCTAAACGTTT-ATTGAATTCCATTTGAATGTTTAAG-AGAAGAAGAGCGGGCACGATTCTTCAT--TCCTGCTTTG--AAAAGG--------AG-C-GTAATTCGGCCGAAA-ATCATAA---AACT----GGTATggccaagattttgtgacagattcacagacagcgctaaaacaatgttt
gi|2 : ATACAATTGTGA----GAAT--TATTTTAA--TAATA--TTGTAAATATTCAAAACTGGC-CAGC----TTTA-----AA--------ACTG----GTG---TTGGGGCTGCA--A-------GGAAA-----------A--CTGCCACAGCAATAAAAAGCAAAATGG-----ATT-ATGCACATCG----AAG-----CTTTG--CATTG---TTCATGCACAGCAAGTTTTCTTTCAAAACATAGTTGTTTCTTTT---GGAAAAT---------AA-GCAAGAG-AAGAGTTTGGAT--AGG-------AGA---T-------GAGGG-------------------AGGCTTCAGGCTGATCATTCCCAGT----AT-GTTTTAGTGAGTTGCAACTGAT-ATTCAAG-AGGAGAAGCCAGAACAAGATTCTTCAC--TCCAAA---G--AAAGGGA-------CT-GTACAACTTA---GATG-ATAATTACACAACT----GGGATATGCACCACTAGATTTTATACTGATCCTTCTTGC--AGCAAGTTTCATTGTAAttcatattg
gi|20 : tatatgagaaaaactatgtctccctcAATTT-----CT-AAAATACAAAGGGAC-TT-T-ACTCAGT----CAATAACCATCGAAC----CGAA-TCGCAAAAGAGATATGTCCTACAAGA---AAAACTGATCTTTTTCAGTAAGTTTCAGCTC--TATCTCAAT---ATATCGGAGGAGTTGTCCGGACAA
gi|21 : ACAACTGTGA----GAAT--TATTTGAAA-TGTTAACTTATGAGTGTTCAAAACTGGC-AAGT----TTTA-----GG--------ACTGCAAAGTG---A---GGCTttcc
gi|22 : tttttatatatatctataatgtgtttatttctaggtaaaatctatgtctgcacctgtcctcaaCTTCAGACTGATCGTTTCTATT----TA-GTTTCAGT----TCCT-TTGGCGGTTCAAG-AAAAGATGCACCGACATGATTCTTCAT--TCAAACATTG--GAAAGG--------GG-C-ATAACTt
gi|23 : agattATAAAATGGTGA----GAAC--TATCTTAAA-TACCA--TTGTTAATGTTCAAAACTGGC-GAGtgc
gi|24 : gtcaattttttttaaataacaactagaaaactatatctcccccttGACAAGACTTTTCATTCCAACATTGCAAAAGCTTGTATCTCGGCTAAAAATCATCGAACCAGATTGCAAAG-GG-G----------ATATATGCACAAC
gi|25 : GAAAAACAAAGTGG-----A-T-ATACACGTCA----AGG-----TTTCA--TG------ATCATTTGAAACAAGTTT--TGTCAAAATGCGGTCATTGGTTGT---Gtagatttgata
gi|26 : gaaatggttatCCAACTAATGGTTCAAG-AGAAGAAATGCAACCTGGCTTCTTTAT--TGCAAC---
gi|27 : CCGGT-GAGA----TTTA-----GC--------ATTG----ATG---ATGTGGATGCA--A-------GAAAA-----------A--CTGTAATGGCACCattgtaaag
gi|28 : GTGA-----AATAATATCTTAAA-TGATA--TTGTTA-TATTCAAAACTGGC-GAGT----TT
gi|3 : CTTGCCAAGCAAGTTTCATTGAAATATGTCCCTCAAACAAGACTTTAAATTCCGAAAATGAAAACTGCT-TTAT-CTTAAATAATGCAATAA--A---AACA----GAA-TG-CAAAAGAGAAATGTGCAACAAGACATCACACTGATCATTC-CAACAAGATTTGGCTAATTCTTACCAA-AGATGTC---TGAGATAGCTGGACAAGAATTTTTTATTTCAAAAATACAAAGAGTCGTTACTCTGTCAAAAATCATTGAA--AAAAC-GA-AAAAGG---------GATATGCACAAGTAGAT-TTCAC----A-------G--CAAGTTTCAGCTAAATCTGATCACAAATGTCAGGGTTTT--GTGACAGGTCGACAGAAAG-----ACAGATG
gi|4 : ATAAAACTATGA----CAAT--TATATTAAA-TGTTT--TTGTTAATCTACAATACTGGC-GAGT----TTTA-----GG--------ACTG----GTG---ACTGGGCTGCA--A-------GAAAA-----------A--CTGTAATGGCACCGCTACGCAGAGTGG-----A-A-ATGCACATCG----AGG-----TTTCA--CATCG---ATCATT--------GTTT---GT-GAAACATAGCCGTTGGTTGTTAAGAAGAAGCCTTCAGATAATGCAAAGGCCACAACT--CAGTCAAACATTATCAAACACTTAGGCCAAAGGG--ATGTGTGC-----AAATAAAACTCA--CTGATCATTCCTAGC----AA-GTTTCAGTTAGTTTCAaaagcatatgtttaaaagtaaatttaccaatt
gi|5 : ataattatatgaatttatagagatgtaagaagaagttgttgctcggtgaaagtttatgtatctccattATACAGTTGCGA----AAAT--TATCTTAAA-TGTTA--TTGTTAATGTTCAAAAGTGAA-AAGT----TTTA-----GG--------ACAG----ATG---ATGACATTGCA--A-------GAAAA-----------T--CTGAAATGGCACTGAAGGGCAAAGTGG-----A-TAATGCACG-----------------TCA--TAG-----ATCAATTGCTGTAAGTTT--TGT--AAACAAGGTCATTGGTTGT---GGAAAAG------------------------------ATTCAAA-------A------------GGAGGGATACATGAAC-----AACTAGGCTCCAGGATGATTCTTCCCGTT----AA-GTTTCAATGTATTCCAGCTGATGGGTCAAG----AGAATCCCAGGAAAGATTCTTCAG--TCTGACATTG--AAAAAT--------GG-CTACAACTgtta
gi|6 : agaatttgttttttgggggaaaaagtataaaaaaaatatgtctccccatcATAAAATTGTGA----GAAT--TATCTTAAA-TGTTA--CAGTTAATGTTCGAAACTGTT-GAGC----TTTA-----GG--------ACTA----GTA---ATTGGGCTGCA--A-------GAAAA-----------A--CTGAAATAATACAGAAAAGCGAAGTGG-----A-T-ATACTCACTG----GAG-----CATCA--CATGG---ATCAATAATTATAA---T--TGTCAAAACGGGGTTGTTGATTGT---GGAGAGG---------AG-GCATGGG
gi|7 : tatcaatttcatacaagtttaaaatagaactagaatttgtttttggggaatattgtctcccactcAATACAATTGTGA----GAAT--AATCTTATG-AGTAA--TTGTTAATGTTCAAAACTGAT-GAGT----TTTA-----TG--------ACTA----GTG---A-GAGGCTGCA--A-------GACAA-----------A--CTGCAACGGCACCAAAAAGCAAAATAG-----A-T-ATGCATATCT----AGGCTTTACTTTA--CATCC---ATCATTCACAGCAAATTT--GGT--------GGTCATTAGTTAT---TAAAAGG---------AA-----GGGT-AGATTTCTCA
gi|8 : cacatgttatatcaaacaagaaattgttttccaagaaaaaattacattaactcctAATAGAGTAGTGA----GAAT--TATCTTAAA-TGTTA--TTGTTACAGTTCAAAACTGGT-AAGT----TTAA-----CA--------ACTT----GTG---ATGAGACTGCA--A-------GAAAA-----------A--CTACAA-AACACCAAAAAGCAAAGTGG-----ATT-ATACACACAG----AGG-----TTTCA--CAGCA---ATCATTCGCAGCAAATTT--T-----------GTTGTTAGTTGT---GGAGAAA---------AA-GCATGGGCAAGATTTTTCACGCAGA-------GAT---TT----CAAAGG
gi|9 : aacttttttctaaaaataaatacaacTATGATTGTGA----AAAT--TATCTTAAA-AGTTA--TTGTTAATGTTCAAAACTGGC-AAGT----TTTA------------------------TG---ATGG-------------------AAA-----------ATCCTTTGA----ACCAGACTACAAAAGAG-----A-T-AT----GTCGAAAAAGA-----TTTTATTCTA-----ATCCATCTCAGCAAATTT--CAATGAAATTCAGGAATTGGTTAA---AGAGAAG---------AA-TCACGGACAAGATATTTAATTCCGA-------AAA---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TCACCGAACCAAAAGTGTGACATTGACTTTTGAGGTACGGATCTGT