lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 333333333333333333333333333333 2222222222 11111 3333333333333333333333 222222222222 1 111111 666666666666666666666 1 11111 1 5555 222222 222222 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 4 1 1 1 2 1
lowQualScore : 1 9 5 2 2 999999999999999999999999999999 5 1111111111 11111 9999999999999999999999 555555555555 2 3 666666 5 5 666666666666666666666 4 0 4 99999 5 0 8 4444 3 666666 888888 8 2 2 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 6 0 6 0 6 6 7 6 7 6 6 5 6 0 5 4 2
lowQualScore : . . . . . .............................. . .......... ..... ...................... ............ . . ...... . . ..................... . . . ..... . . . .... . ...... ...... . . . . ................................................................................................................................................ . . . . . . . . . . . . . . . . . .
lowQualScore : 4 8 6 0 2 444444444444444444444444444444 0 9999999999 11111 4444444444444444444444 888888888888 6 4 444444 7 7 999999999999999999999 0 0 6 00000 8 8 0 2222 2 222222 888888 8 8 5 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
consensus : AACTTCAAAACATAGGCACAAACTCTACATTGCAG-C---------------CNAA------A--AT-TTG----------GTGGTCAAAACTCTACATT-----CAAAC----------------------AAATTA----------TATAGGGGTCAAAACTCTACATTTAATC------TAAAT-AAAAC-TTT--------G---------T-GACACAAGCTCTTGGATTTCAATANGAATAAAAA-TACATGT----GTCTTAT-----AAACA------TTTTTTTTGTATTTGAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATNGTNAATCA
Reference ( gi|1 ) : AACTTCAAAACAAAGTCACAAGCTTTACATTGCAG-C---------------CAAA------C--AT-TTG----------GTGGTCAAAACTCTACATT-----CAAAC----------------------AAATTA----------TATAGGTGTCAAAACTCTGCATTTAATC------TAAAT-AAAAC-TTT--------G---------T-GACACAAGCTGTTGGGTTTTAACATAAATAAAAA-TACATGTGGTAGTCTTAT-----AAACA------TTTGTTTTGTATTTGAAGATAATGTATTGCAGTGAAAAGCATTGACATAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGTATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATT-ATATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAA-TATTGGTAAATATCCAATATTGAATCCTTTCGAATGTAATATTATGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTAAATGACATATTCATAATTATGACGATTGTGTTGTCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATACTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTATTATTGATATG-CTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|7 : AGCTTCAAAACACAGACAAAAACTCTGCATTGCCGTC---------------CAAA----------T-TTG----------GTGGTCAAAACTCTTCATTGAAACCAAAC----------------------AAATTA----------TACAGAGGTCAAAACTCTACATTT-ATC------TAAAT-AAAAC-TTT--------A---------T---CA--------------TTAA---GAAT-GAAA-TACACGT----GTCTTAT-----TAACA------TTTTTTTTATATTTGGAGAAAATGTAT
gi|4 : gtggggcatttggcctggaaatgggtacaaatgtgccctgtaAACTTCAAAACATAGACAGTAGCTCTACATTGCAG-CTTAAAATTTGGTGGTCAAAACTTTAC--AT-TCGACTCACTATAGTGGCCGAAACTCTACATT-----CAAAC----------------------AAATTA----------TATAGCAGTGAAAACTCTATATTTAATC------TAAAT-AAAACGTTTTATTAACAG---------T-GGTATTAGCTCTTGGATTTCATTAAGAAT-AAAA-TACATGC----ATCTTATAAAAAAAATA------TTTCTATTGTATTTGAAGAAAATG
gi|5 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgAACTTCAGAGAATAGGCAAAAACTCAACATTGCAG-C---------------TTAA------A--AT-TTG----------GTGGTCAAATTTCTACATT-----GAAAC----------------------CAAT------------TATAGGGGTAAAAACTCTACATTAAATCTATTAGTAAGT-AAAAC-TTC--------GTCTAGGCAAT-GGCATACGCTCTTGGATTTCATTAAGACTAAA----ACATGT----GTC-TAT-----GAACACGGTACTTTTTTTTGTATTTGAAGAAAACGTATTGCA
gi|10 : gtaaatgggtacatatgtactctgtaAACTTCAAAACATTGACACGAACTCTACATTGCAA-T---------------CTAA------A--AT-TTG----------GTGGTCAAAACCCTACATT-----CAAAC----------------------AAATTA----------TA-------CAAAACTCTAAATTTAAAC------TGAATGGAAAC-TGT--------C---------T--ACACAA
gi|6 : catatgtgcctcgtaAACTTCAAAACAGAGGCACAAACTTTACATTACAG-C---------------CTAA------A--AT-TTG----------AGGGTAAAATCTCTACATT-----AAAAC----------------------CAAT------------GATAGGGATCAAAACTCTGCATTCAAtgacatttatatataagctgt
gi|2 : gggacatttgacctaaaatggggaaatatgtgtaACTTCAAAACAAAGTCACAAGCTTTACATTGCAG-C---------------CAAA------C--AT-TTG----------GTGGTCAAAACTCTACATT-----CAAAC----------------------AAATTA----------TATAGGTGTCAAAACTCTGCATTTAATC------TAAAT-AAAAC-TTT--------G---------T-GACACAAGCTGTTGGGTTTTAACATAAATAAAAAATACATGTGGTAGTCTTTT-----AAACA------TTTGTTTTGTATTTGAAGA-AAT--ATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATG-CTCCCCTGAAAATTGGACGAAATCAAAATAATCAATCAacactttatatagggatcgaaactctacatttaatcaaaataaaattctgtccatataatgtatacgctcttggatttcataaagagtaaa
gi|8 : ACTTCAAAACATAGGCACGAACTCTACATTGCAG-C---------------CTAA------A--GT-GTG----------GTGGTCAAAACGTTACATT-----CAAACCTATTACAGGGGTCAAAACTCTAAATTAAAACAAATTATATAGGGGTCGATACCCTACATTTAATC------TAAAT-AAAAC-TTT--------GTCTACACAAT-GACATAAGTTTTTGGATTTC-ATTTAGGTTAAAA-TACATGT
gi|9 : gttcatatgtaccctgtgcGTCA-AAACTCCACATT---------------------CAAA------CCAATGTTA----------GAGGTCAAAACTCTACATT-----CAAAC----------------------AAATTA----------TACAGGGATCAAAA-----CATTTAATC------TAAAT-AAAAC-TTT--------G---------TCTACACAActt
gi|13 : gggcacttgacctgaaaatgggtacatctgtgccctgtaaacttcaaaacataggcacaaactttacattctagcgataaatttggttGGTCAAAACTCTAAATT-----CACAC----------------------CAAT------------TATAGGGGTCGAAACTCAACATTtggcataagctc
gi|3 : ggATATGGCTCTCCTGAAAATTGGA-GGAATTAAAATTGTAAATCA
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TCACAATATGCACCATAAATATTTTGAACTCGGGATTTAACTTTTTAGATATAGAATTCAATTCAGAGATTGATTTTTTTTAAAATATATACATCTGGGTCAACTTGGAGATGTAACGTTCTTTGAAA
Unaligned ( gi|12 ): AACAGAATATTATCAAATTAAATTAAGAACAAAATACATGTCTTATGAACTAAATATTTTTGTATTTGAAGTAAATGTA
Unaligned ( gi|14 ): GGTGTAACAGGACTGAGTATCTAAACCATGAAGATAGACCGAAACAACGT
Unaligned ( gi|15 ): TGGACACTTGATCTGATAATGGGTCCATATGTGCCCTGTAAACTTTAACA
Unaligned ( gi|16 ): GTCTCCCTGTACAATCAATTTATCATATAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 5555555555555555555555555 1111111 11 2222 111111 22222222222222222 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 11
lowQualScore : 1 2 4 0 666 77777 3 777 0 3333333 44 3 3 0000000000000000000000000 1 2 1111111 0 4 0 99 1 3 11 2 4444 777777 77 22222222222222222 666666 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 4 4 3 33 6 11 1
lowQualScore : . . . . ... ..... . ... . ....... .. . . ......................... . . ....... . . . .. . . .. . .... ...... .. ................. ...... . ................................................................................................................................................ . . . . . .. . .. .
lowQualScore : 1 1 0 5 555 11111 1 999 8 2222222 22 1 6 6666666666666666666666666 2 6 8888888 1 4 9 99 0 4 22 0 3333 000000 99 44444444444444444 444444 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 33 7 77 0
consensus : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGAT-TTCA-NTAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
Reference ( family-2130 ) : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCAAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGAT-TTCA-ATANGAATAAAAA-TACATGTG----TCTTAT-----AAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATNGTNAATCA
gi|1 : AACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGT-TTTA-ACATAAATAAAAA-TACATGTGGTAGTCTTAT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGATAATGTATTGCAGTGAAAAGCATTGACATAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGTATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATT-ATATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAA-TATTGGTAAATATCCAATATTGAATCCTTTCGAATGTAATATTATGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTAAATGACATATTCATAATTATGACGATTGTGTTGTCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATACTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTATTATTGATAT-GCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|10 : AACTTCAAAACATTGACACGAACTCTACATTGCAATCTAAAAT-T-TGGTGGTCAAAACCCTACATT-----CAAACAAATTA-TA-------CAAAACTCTAAATTTAAAC------TGA--ATGGAAAC-TGT--------C---------T------ACACAA-------
gi|12 : catatgtgcctcgtaTAAGAACAAAA--TACA--TG----TCTTAT-----GAACTAA------AT----AT---TTTTGTATTT------GAAGTAAATGTAtgacatttatatataagctgt
gi|13 : aacagaatattatcaaattaaatGGTCAAAACTCTAAATT-----CACACCAAT---TATAGGGGTCGAAACTCAACATT
gi|2 : ggACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGT-TTTA-ACATAAATAAAAAATACATGTGGTAGTCTTTT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGAAA---TATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATG-CTCCCCTGAAAATTGGACGAAATCAAAATAATCAATCA
gi|3 : ATATGGCTCTCCTGAAAATTGGA-GGAATTAAAATTGTAAATCA
gi|4 : acAACTTCAAAACATAGACAGTAGCTCTACATTGCAGCTTAAAAT-T-TGGTGGTCAAAACTTTACATT-----C-GAC---TCACTATAGTGGCCGAAACTCTACATTCAAAC------AAATTAT-ATAGC---A--------G---------T-----GA---AA-------ACTCT---ATATTTA-ATCTAAATAAAA--------CG----TTTTAT-----TAAC--A------GTGGTATTAGCTCTTGGATTTCATTAAGAATAAAATACA-TGCAatctacatcatcttgaagattgaactttcttagaaatacagattttaactcatagactggactttttttaagatatatacaatgtacatgtagttggagattgggcattctttaataaattatttaacttggcgcttattgtgttgttgttttcacaatatgtacacgaaataaacgtggggattgaacttttaattacagataaaaattatataattcaacttggagattgaactgtttcagttttacatactatacatctaggtcatcttagaaaattatttttttaaatacactgaactcaatttggagatttaattttgaaatacataataaaacttggatatggactttttaagattggattaaacattccat
gi|4 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgAAACTTTACATT-CGACTCACTAT----AGTGGCCGAAACTCTACATT-----CAAACAAATTA-TATAGCAGTGAAAACTCTATATTTAATC------TAA--AT-AAAACGTTTTATTAACAG---------T-----GGTATTA-------GCTCTTGGAT-TTCA-TTAAGAAT-AAAA-TACATGCA----TCTTATAAAAAAAAT--A------TT----TC---TATTGTATTT------GAAGAAAATGtcttataaaaaaaatatttctattgtatttgaagaaaatg
gi|5 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgaacttcaaaacatagacagtagctctacattgcagcttaaaatttggtggtcaAACTTCAGAGAATAGGCAAAAACTCAACATTGCAGCTTAAAAT-T-TGGTGGTCAAATTTCTACATT-----GAAACCAAT---TATAGGGGTAAAAACTCTACATTAAATCTATTAGTAA--GT-AAAAC-TTC--------GTCTAGGCAAT-----GGCATAC-------GCTCTTGGAT-TTCA-TTAAGACTAAA----ACATGTG----TC-TAT-----GAAC--ACGGTACTT----TT---TTTTGTATTT------GAAGAAAACGTATTGCA
gi|6 : gtaaatgggtacatatgtactctgtaAACTTCAAAACAGAGGCACAAACTTTACATTACAGCCTAAAAT-T-TGAGGGTAAAATCTCTACATT-----AAAACCAAT---GATAGGGATCAAAACTCTGCATTCA-----------------AACAC-TTT--------A---------TATAGGGATCGAA-------ACTC-TACAT-TT-A-ATCAAAATAAAA
gi|6 : gggacatttgacctaaaatggggaaatatgtgtaGGTAAAATCTCTACATTAAAACCAATGAT----AGGGATCAAAACTCTGCATT-----CAAACACTTTA-TATAGGGATCGAAACTCTACATTTAATC------AAA--AT-AAAAT-TCT--------G---------TC----CATATAATGTATACGCTCTTGGAT-TTCA-TAAAGAGTAAAttctgtccatataatgtatacgctcttggatttcataaagagtaaa
gi|7 : gggacatttgacctaaaatggggaaatatgtgtaaacttcaaaacagaggcacaaactttacattacagcctaaaatttgagAGCTTCAAAACACAGACAAAAACTCTGCATTGCCGTCCAAA-T-T-TGGTGGTCAAAACTCTTCATTGAAACCAAACAAATTA-TACAGAGGTCAAAACTCTACATTT-ATC------TAA--AT-AAAAC-TTT--------A-----------------------------------------TCA-TTAAGAAT-GAAA-TACACGTG----TCTTAT-----TAAC--A------TT----TT---TTTTATATTT------GGAGAAAATGTAT
gi|8 : gtggggcatttggcctggaaatgggtacaaatgtgccctgtaACTTCAAAACATAGGCACGAACTCTACATTGCAGCCTAAAGT-G-TGGTGGTCAAAACGTTACATT-----CAAACCTAT---TACAGGGGTCAAAACTCTAAATTAAAAC-------AA--AT-
gi|8 : gttcatatgtaccctgtgcAAACGTTACATTCAAACCTA---T-TACAGGGGTCAAAACTCTAAATT-----AAAACAAATTA-TATAGGGGTCGATACCCTACATTTAATC------TAA--AT-AAAAC-TTT--------GTCTACACAAT-----GACATAA-------GTTTTTGGAT-TTCATTTAGG--TTAAAA-TACATGTtatataggggtcgataccctacatttaatctaaataaaactttgtctacacaatgacataagtttttggatttcatttaggttaaaatacatgtctt
gi|9 : gttcatatgtaccctgtgcacttcaaaacataggcacgaactctacattgcagcctaaagtgtggtggtcaAACTTCAAAACATAGGCACAAACTTTACATTCTAGCGATAAAT-T-TGGTTGTCAAAACTCCACATT-----CAAACCAA-TG-T-TAGAGGTCAAAACTCTACATTCAAAC-------AA--AT-ctt
gi|9 : gggcacttgacctgaaaatgggtacatctgtgccctgtaAAACTCCACATTCAAACC---AATGT-TAGAGGTCAAAACTCTACATT-----CAAACAAATTA-TACAGGGATCAAA-----ACATTTAATC------TAA--AT-AAAAC-TTT--------G---------TC----TACACAA-------tatacagggatcaaaacatttaatctaaataaaactttgtctacacaatggcataagctc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACAATATGCACCATAAATATTTTGAACTCGGGATTTAACTTTTTAGATATAGAATTCAATTCAGAGATTGATTTTTTTTAAAATATATACATCTGGGTCAACTTGGAGATGTAACGTTCTTTGAAA
Unaligned ( gi|14 ): GGTGTAACAGGACTGAGTATCTAAACCATGAAGATAGACCGAAACAACGT
Unaligned ( gi|15 ): TGGACACTTGATCTGATAATGGGTCCATATGTGCCCTGTAAACTTTAACA
Unaligned ( gi|16 ): GTCTCCCTGTACAATCAATTTATCATATAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 5555555555555555555555555 1111111 11 2222 111111 22222222222222222 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 11
lowQualScore : 1 2 4 0 666 77777 3 777 1 0 3333333 44 3 3 0000000000000000000000000 1 2 1111111 0 4 0 1 3 11 2 4444 555555 77 22222222222222222 666666 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 1 1 1 33 6
lowQualScore : . . . . ... ..... . ... . . ....... .. . . ......................... . . ....... . . . . . .. . .... ...... .. ................. ...... . ................................................................................................................................................ . . . . . .. .
lowQualScore : 1 1 0 5 555 11111 1 999 4 8 2222222 22 1 6 6666666666666666666666666 2 6 8888888 1 4 9 0 4 22 0 3333 333333 99 44444444444444444 444444 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 33 7
consensus : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGAT-TTCATTAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
Reference ( family-2130 ) : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGAT-TTCANTAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|1 : AACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGT-TTTAACATAAATAAAAA-TACATGTGGTAGTCTTAT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGATAATGTATTGCAGTGAAAAGCATTGACATAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGTATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATT-ATATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAA-TATTGGTAAATATCCAATATTGAATCCTTTCGAATGTAATATTATGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTAAATGACATATTCATAATTATGACGATTGTGTTGTCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATACTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTATTATTGATAT-GCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|10 : AACTTCAAAACATTGACACGAACTCTACATTGCAATCTAAAAT-T-TGGTGGTCAAAACCCTACATT-----CAAACAAATTA-TA-------CAAAACTCTAAATTTAAAC------TGA--ATGGAAAC-TGT--------C---------T------ACACAA-------
gi|12 : catatgtgcctcgtaATTAAGAACAAAA--TACA--TG----TCTTAT-----GAACTAA------AT----AT---TTTTGTATTT------GAAGTAAATGTAtgacatttatatataagctgt
gi|13 : aacagaatattatcaaattaaGGTCAAAACTCTAAATT-----CACACCAAT---TATAGGGGTCGAAACTCAACATT
gi|2 : ggACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGT-TTTAACATAAATAAAAAATACATGTGGTAGTCTTTT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGAAA---TATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATG-CTCCCCTGAAAATTGGACGAAATCAAAATAATCAATCA
gi|3 : ATATGGCTCTCCTGAAAATTGGA-GGAATTAAAATTGTAAATCA
gi|4 : acAACTTCAAAACATAGACAGTAGCTCTACATTGCAGCTTAAAAT-T-TGGTGGTCAAAACTTTACATT-----C-GAC---TCACTATAGTGGCCGAAACTCTACATTCAAAC------AAATTAT-ATAGC---A--------G---------T-----GA---AA-------ACTCT---ATATTTAATCTAAATAAAA--------CG----TTTTAT-----TAAC--A------GTGGTATTAGCTCTTGGATTTCATTAAGAATAAAATACA-TGCAatctacatcatcttgaagattgaactttcttagaaatacagattttaactcatagactggactttttttaagatatatacaatgtacatgtagttggagattgggcattctttaataaattatttaacttggcgcttattgtgttgttgttttcacaatatgtacacgaaataaacgtggggattgaacttttaattacagataaaaattatataattcaacttggagattgaactgtttcagttttacatactatacatctaggtcatcttagaaaattatttttttaaatacactgaactcaatttggagatttaattttgaaatacataataaaacttggatatggactttttaagattggattaaacattccat
gi|4 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgAAACTTTACATT-CGACTCACTAT----AGTGGCCGAAACTCTACATT-----CAAACAAATTA-TATAGCAGTGAAAACTCTATATTTAATC------TAA--AT-AAAACGTTTTATTAACAG---------T-----GGTATTA-------GCTCTTGGAT-TTCATTAAGAAT-AAAA-TACATGCA----TCTTATAAAAAAAAT--A------TT----TC---TATTGTATTT------GAAGAAAATGtcttataaaaaaaatatttctattgtatttgaagaaaatg
gi|5 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgaacttcaaaacatagacagtagctctacattgcagcttaaaatttggtggtcaAACTTCAGAGAATAGGCAAAAACTCAACATTGCAGCTTAAAAT-T-TGGTGGTCAAATTTCTACATT-----GAAACCAAT---TATAGGGGTAAAAACTCTACATTAAATCTATTAGTAA--GT-AAAAC-TTC--------GTCTAGGCAAT-----GGCATAC-------GCTCTTGGAT-TTCATTAAGACTAAA----ACATGTG----TC-TAT-----GAAC--ACGGTACTT----TT---TTTTGTATTT------GAAGAAAACGTATTGCA
gi|6 : gtaaatgggtacatatgtactctgtaAACTTCAAAACAGAGGCACAAACTTTACATTACAGCCTAAAAT-T-TGAGGGTAAAATCTCTACATT-----AAAACCAAT---GATAGGGATCAAAACTCTGCATTCA-----------------AACAC-TTT--------A---------TATAGGGATCGAA-------ACTC-TACAT-TT-AATCAAAATAAAA
gi|6 : gggacatttgacctaaaatggggaaatatgtgtaGGTAAAATCTCTACATTAAAACCAATGAT----AGGGATCAAAACTCTGCATT-----CAAACACTTTA-TATAGGGATCGAAACTCTACATTTAATC------AAA--AT-AAAAT-TCT--------G---------TC----CATATAATGTATACGCTCTTGGAT-TTCATAAAGAGTAAAttctgtccatataatgtatacgctcttggatttcataaagagtaaa
gi|7 : gggacatttgacctaaaatggggaaatatgtgtaaacttcaaaacagaggcacaaactttacattacagcctaaaatttgagAGCTTCAAAACACAGACAAAAACTCTGCATTGCCGTCCAAA-T-T-TGGTGGTCAAAACTCTTCATTGAAACCAAACAAATTA-TACAGAGGTCAAAACTCTACATTT-ATC------TAA--AT-AAAAC-TTT--------A-----------------------------------------TCATTAAGAAT-GAAA-TACACGTG----TCTTAT-----TAAC--A------TT----TT---TTTTATATTT------GGAGAAAATGTAT
gi|8 : gtggggcatttggcctggaaatgggtacaaatgtgccctgtaACTTCAAAACATAGGCACGAACTCTACATTGCAGCCTAAAGT-G-TGGTGGTCAAAACGTTACATT-----CAAACCTAT---TACAGGGGTCAAAACTCTAAATTAAAAC-------AA--AT-
gi|8 : gttcatatgtaccctgtgcAAACGTTACATTCAAACCTA---T-TACAGGGGTCAAAACTCTAAATT-----AAAACAAATTA-TATAGGGGTCGATACCCTACATTTAATC------TAA--AT-AAAAC-TTT--------GTCTACACAAT-----GACATAA-------GTTTTTGGAT-TTCATTTAG-GTTAAAA-TACATGTtatataggggtcgataccctacatttaatctaaataaaactttgtctacacaatgacataagtttttggatttcatttaggttaaaatacatgtctt
gi|9 : gttcatatgtaccctgtgcacttcaaaacataggcacgaactctacattgcagcctaaagtgtggtggtcaAACTTCAAAACATAGGCACAAACTTTACATTCTAGCGATAAAT-T-TGGTTGTCAAAACTCCACATT-----CAAACCAA-TG-T-TAGAGGTCAAAACTCTACATTCAAAC-------AA--AT-ctt
gi|9 : gggcacttgacctgaaaatgggtacatctgtgccctgtaAAACTCCACATTCAAACC---AATGT-TAGAGGTCAAAACTCTACATT-----CAAACAAATTA-TACAGGGATCAAA-----ACATTTAATC------TAA--AT-AAAAC-TTT--------G---------TC----TACACAA-------tatacagggatcaaaacatttaatctaaataaaactttgtctacacaatggcataagctc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACAATATGCACCATAAATATTTTGAACTCGGGATTTAACTTTTTAGATATAGAATTCAATTCAGAGATTGATTTTTTTTAAAATATATACATCTGGGTCAACTTGGAGATGTAACGTTCTTTGAAA
Unaligned ( gi|14 ): GGTGTAACAGGACTGAGTATCTAAACCATGAAGATAGACCGAAACAACGT
Unaligned ( gi|15 ): TGGACACTTGATCTGATAATGGGTCCATATGTGCCCTGTAAACTTTAACA
Unaligned ( gi|16 ): GTCTCCCTGTACAATCAATTTATCATATAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 5555555555555555555555555 1111111 11 2222 111111 22222222222222222 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 11
lowQualScore : 1 2 4 0 666 77777 3 777 1 0 3333333 44 3 3 0000000000000000000000000 1 2 1111111 44 4 11 3 11 2 4444 555555 77 22222222222222222 666666 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 1 1 1 33 6
lowQualScore : . . . . ... ..... . ... . . ....... .. . . ......................... . . ....... .. . .. . .. . .... ...... .. ................. ...... . ................................................................................................................................................ . . . . . .. .
lowQualScore : 1 1 0 5 555 11111 1 999 4 8 2222222 22 1 6 6666666666666666666666666 2 6 8888888 77 0 88 4 22 0 3333 333333 99 44444444444444444 444444 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 33 7
consensus : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
Reference ( family-2130 ) : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|1 : AACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGTTTTAA-CATAAATAAAAA-TACATGTGGTAGTCTTAT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGATAATGTATTGCAGTGAAAAGCATTGACATAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGTATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATT-ATATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAA-TATTGGTAAATATCCAATATTGAATCCTTTCGAATGTAATATTATGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTAAATGACATATTCATAATTATGACGATTGTGTTGTCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATACTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTATTATTGATAT-GCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|10 : AACTTCAAAACATTGACACGAACTCTACATTGCAATCTAAAAT-T-TGGTGGTCAAAACCCTACATT-----CAAACAAATTA-TA-------CAAAACTCTAAATTTAAAC------TGA--ATGGAAAC-TGT--------C---------T------ACACAA-------
gi|12 : catatgtgcctcgtaAT-TAAGAACAAAA--TACA--TG----TCTTAT-----GAACTAA------AT----AT---TTTTGTATTT------GAAGTAAATGTAtgacatttatatataagctgt
gi|13 : aacagaatattatcaaattaaGGTCAAAACTCTAAATT-----CACACCAAT---TATAGGGGTCGAAACTCAACATT
gi|2 : ggACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGTTTTAA-CATAAATAAAAAATACATGTGGTAGTCTTTT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGAAA---TATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATG-CTCCCCTGAAAATTGGACGAAATCAAAATAATCAATCA
gi|3 : ATATGGCTCTCCTGAAAATTGGA-GGAATTAAAATTGTAAATCA
gi|4 : acAACTTCAAAACATAGACAGTAGCTCTACATTGCAGCTTAAAAT-T-TGGTGGTCAAAACTTTACATT-----C-GAC---TCACTATAGTGGCCGAAACTCTACATTCAAAC------AAATTAT-ATAGC---A--------G---------T-----GA---AA-------ACTC-TATATTTAATCTA--AATAAAA--------CG----TTTTAT-----TAAC--A------GTGGTATTAGCTCTTGGATTTCATTAAGAATAAAATACA-TGCAatctacatcatcttgaagattgaactttcttagaaatacagattttaactcatagactggactttttttaagatatatacaatgtacatgtagttggagattgggcattctttaataaattatttaacttggcgcttattgtgttgttgttttcacaatatgtacacgaaataaacgtggggattgaacttttaattacagataaaaattatataattcaacttggagattgaactgtttcagttttacatactatacatctaggtcatcttagaaaattatttttttaaatacactgaactcaatttggagatttaattttgaaatacataataaaacttggatatggactttttaagattggattaaacattccat
gi|4 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgAAACTTTACATT-CGACTCACTAT----AGTGGCCGAAACTCTACATT-----CAAACAAATTA-TATAGCAGTGAAAACTCTATATTTAATC------TAA--AT-AAAACGTTTTATTAACAG---------T-----GGTATTA-------GCTCTTGGATTTCAT-TAAGAAT-AAAA-TACATGCA----TCTTATAAAAAAAAT--A------TT----TC---TATTGTATTT------GAAGAAAATGtcttataaaaaaaatatttctattgtatttgaagaaaatg
gi|5 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgaacttcaaaacatagacagtagctctacattgcagcttaaaatttggtggtcaAACTTCAGAGAATAGGCAAAAACTCAACATTGCAGCTTAAAAT-T-TGGTGGTCAAATTTCTACATT-----GAAACCAAT---TATAGGGGTAAAAACTCTACATTAAATCTATTAGTAA--GT-AAAAC-TTC--------GTCTAGGCAAT-----GGCATAC-------GCTCTTGGATTTCAT-TAAGACTAAA----ACATGTG----TC-TAT-----GAAC--ACGGTACTT----TT---TTTTGTATTT------GAAGAAAACGTATTGCA
gi|6 : gtaaatgggtacatatgtactctgtaAACTTCAAAACAGAGGCACAAACTTTACATTACAGCCTAAAAT-T-TGAGGGTAAAATCTCTACATT-----AAAACCAAT---GATAGGGATCAAAACTCTGCATTCA-----------------AACAC-TTT--------A---------TATAGGGATCGAA-------ACTC-TACATTTAAT-CAA-AATAAAA
gi|6 : gggacatttgacctaaaatggggaaatatgtgtaGGTAAAATCTCTACATTAAAACCAATGAT----AGGGATCAAAACTCTGCATT-----CAAACACTTTA-TATAGGGATCGAAACTCTACATTTAATC------AAA--AT-AAAAT-TCT--------G---------TC----CATATAATGTATACGCTCTTGGATTTCAT-AAAGAGTAAAttctgtccatataatgtatacgctcttggatttcataaagagtaaa
gi|7 : gggacatttgacctaaaatggggaaatatgtgtaaacttcaaaacagaggcacaaactttacattacagcctaaaatttgagAGCTTCAAAACACAGACAAAAACTCTGCATTGCCGTCCAAA-T-T-TGGTGGTCAAAACTCTTCATTGAAACCAAACAAATTA-TACAGAGGTCAAAACTCTACATTT-ATC------TAA--AT-AAAAC-TTT--------A----------------------------------------TCAT-TAAGAAT-GAAA-TACACGTG----TCTTAT-----TAAC--A------TT----TT---TTTTATATTT------GGAGAAAATGTAT
gi|8 : gtggggcatttggcctggaaatgggtacaaatgtgccctgtaACTTCAAAACATAGGCACGAACTCTACATTGCAGCCTAAAGT-G-TGGTGGTCAAAACGTTACATT-----CAAACCTAT---TACAGGGGTCAAAACTCTAAATTAAAAC-------AA--AT-
gi|8 : gttcatatgtaccctgtgcAAACGTTACATTCAAACCTA---T-TACAGGGGTCAAAACTCTAAATT-----AAAACAAATTA-TATAGGGGTCGATACCCTACATTTAATC------TAA--AT-AAAAC-TTT--------GTCTACACAAT-----GACATAA-------GTTTTTGGATTTCAT-TTAG-GTTAAAA-TACATGTtatataggggtcgataccctacatttaatctaaataaaactttgtctacacaatgacataagtttttggatttcatttaggttaaaatacatgtctt
gi|9 : gttcatatgtaccctgtgcacttcaaaacataggcacgaactctacattgcagcctaaagtgtggtggtcaAACTTCAAAACATAGGCACAAACTTTACATTCTAGCGATAAAT-T-TGGTTGTCAAAACTCCACATT-----CAAACCAA-TG-T-TAGAGGTCAAAACTCTACATTCAAAC-------AA--AT-ctt
gi|9 : gggcacttgacctgaaaatgggtacatctgtgccctgtaAAACTCCACATTCAAACC---AATGT-TAGAGGTCAAAACTCTACATT-----CAAACAAATTA-TACAGGGATCAAA-----ACATTTAATC------TAA--AT-AAAAC-TTT--------G---------TC----TACACAA-------tatacagggatcaaaacatttaatctaaataaaactttgtctacacaatggcataagctc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACAATATGCACCATAAATATTTTGAACTCGGGATTTAACTTTTTAGATATAGAATTCAATTCAGAGATTGATTTTTTTTAAAATATATACATCTGGGTCAACTTGGAGATGTAACGTTCTTTGAAA
Unaligned ( gi|14 ): GGTGTAACAGGACTGAGTATCTAAACCATGAAGATAGACCGAAACAACGT
Unaligned ( gi|15 ): TGGACACTTGATCTGATAATGGGTCCATATGTGCCCTGTAAACTTTAACA
Unaligned ( gi|16 ): GTCTCCCTGTACAATCAATTTATCATATAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 5555555555555555555555555 1111111 11 2222 111111 22222222222222222 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 11
lowQualScore : 1 2 4 0 666 77777 3 777 1 0 3333333 44 3 3 0000000000000000000000000 1 2 1111111 44 4 11 3 11 2 4444 555555 77 22222222222222222 666666 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 1 1 1 33 6
lowQualScore : . . . . ... ..... . ... . . ....... .. . . ......................... . . ....... .. . .. . .. . .... ...... .. ................. ...... . ................................................................................................................................................ . . . . . .. .
lowQualScore : 1 1 0 5 555 11111 1 999 4 8 2222222 22 1 6 6666666666666666666666666 2 6 8888888 77 0 88 4 22 0 3333 333333 99 44444444444444444 444444 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 33 7
consensus : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
Reference ( family-2130 ) : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|1 : AACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGTTTTAA-CATAAATAAAAA-TACATGTGGTAGTCTTAT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGATAATGTATTGCAGTGAAAAGCATTGACATAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGTATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATT-ATATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAA-TATTGGTAAATATCCAATATTGAATCCTTTCGAATGTAATATTATGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTAAATGACATATTCATAATTATGACGATTGTGTTGTCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATACTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTATTATTGATAT-GCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|10 : AACTTCAAAACATTGACACGAACTCTACATTGCAATCTAAAAT-T-TGGTGGTCAAAACCCTACATT-----CAAACAAATTA-TA-------CAAAACTCTAAATTTAAAC------TGA--ATGGAAAC-TGT--------C---------T------ACACAA-------
gi|12 : catatgtgcctcgtaAT-TAAGAACAAAA--TACA--TG----TCTTAT-----GAACTAA------AT----AT---TTTTGTATTT------GAAGTAAATGTAtgacatttatatataagctgt
gi|13 : aacagaatattatcaaattaaGGTCAAAACTCTAAATT-----CACACCAAT---TATAGGGGTCGAAACTCAACATT
gi|2 : ggACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGTTTTAA-CATAAATAAAAAATACATGTGGTAGTCTTTT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGAAA---TATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATG-CTCCCCTGAAAATTGGACGAAATCAAAATAATCAATCA
gi|3 : ATATGGCTCTCCTGAAAATTGGA-GGAATTAAAATTGTAAATCA
gi|4 : acAACTTCAAAACATAGACAGTAGCTCTACATTGCAGCTTAAAAT-T-TGGTGGTCAAAACTTTACATT-----C-GAC---TCACTATAGTGGCCGAAACTCTACATTCAAAC------AAATTAT-ATAGC---A--------G---------T-----GA---AA-------ACTC-TATATTTAATCTA--AATAAAA--------CG----TTTTAT-----TAAC--A------GTGGTATTAGCTCTTGGATTTCATTAAGAATAAAATACA-TGCAatctacatcatcttgaagattgaactttcttagaaatacagattttaactcatagactggactttttttaagatatatacaatgtacatgtagttggagattgggcattctttaataaattatttaacttggcgcttattgtgttgttgttttcacaatatgtacacgaaataaacgtggggattgaacttttaattacagataaaaattatataattcaacttggagattgaactgtttcagttttacatactatacatctaggtcatcttagaaaattatttttttaaatacactgaactcaatttggagatttaattttgaaatacataataaaacttggatatggactttttaagattggattaaacattccat
gi|4 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgAAACTTTACATT-CGACTCACTAT----AGTGGCCGAAACTCTACATT-----CAAACAAATTA-TATAGCAGTGAAAACTCTATATTTAATC------TAA--AT-AAAACGTTTTATTAACAG---------T-----GGTATTA-------GCTCTTGGATTTCAT-TAAGAAT-AAAA-TACATGCA----TCTTATAAAAAAAAT--A------TT----TC---TATTGTATTT------GAAGAAAATGtcttataaaaaaaatatttctattgtatttgaagaaaatg
gi|5 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgaacttcaaaacatagacagtagctctacattgcagcttaaaatttggtggtcaAACTTCAGAGAATAGGCAAAAACTCAACATTGCAGCTTAAAAT-T-TGGTGGTCAAATTTCTACATT-----GAAACCAAT---TATAGGGGTAAAAACTCTACATTAAATCTATTAGTAA--GT-AAAAC-TTC--------GTCTAGGCAAT-----GGCATAC-------GCTCTTGGATTTCAT-TAAGACTAAA----ACATGTG----TC-TAT-----GAAC--ACGGTACTT----TT---TTTTGTATTT------GAAGAAAACGTATTGCA
gi|6 : gtaaatgggtacatatgtactctgtaAACTTCAAAACAGAGGCACAAACTTTACATTACAGCCTAAAAT-T-TGAGGGTAAAATCTCTACATT-----AAAACCAAT---GATAGGGATCAAAACTCTGCATTCA-----------------AACAC-TTT--------A---------TATAGGGATCGAA-------ACTC-TACATTTAAT-CAA-AATAAAA
gi|6 : gggacatttgacctaaaatggggaaatatgtgtaGGTAAAATCTCTACATTAAAACCAATGAT----AGGGATCAAAACTCTGCATT-----CAAACACTTTA-TATAGGGATCGAAACTCTACATTTAATC------AAA--AT-AAAAT-TCT--------G---------TC----CATATAATGTATACGCTCTTGGATTTCAT-AAAGAGTAAAttctgtccatataatgtatacgctcttggatttcataaagagtaaa
gi|7 : gggacatttgacctaaaatggggaaatatgtgtaaacttcaaaacagaggcacaaactttacattacagcctaaaatttgagAGCTTCAAAACACAGACAAAAACTCTGCATTGCCGTCCAAA-T-T-TGGTGGTCAAAACTCTTCATTGAAACCAAACAAATTA-TACAGAGGTCAAAACTCTACATTT-ATC------TAA--AT-AAAAC-TTT--------A----------------------------------------TCAT-TAAGAAT-GAAA-TACACGTG----TCTTAT-----TAAC--A------TT----TT---TTTTATATTT------GGAGAAAATGTAT
gi|8 : gtggggcatttggcctggaaatgggtacaaatgtgccctgtaACTTCAAAACATAGGCACGAACTCTACATTGCAGCCTAAAGT-G-TGGTGGTCAAAACGTTACATT-----CAAACCTAT---TACAGGGGTCAAAACTCTAAATTAAAAC-------AA--AT-
gi|8 : gttcatatgtaccctgtgcAAACGTTACATTCAAACCTA---T-TACAGGGGTCAAAACTCTAAATT-----AAAACAAATTA-TATAGGGGTCGATACCCTACATTTAATC------TAA--AT-AAAAC-TTT--------GTCTACACAAT-----GACATAA-------GTTTTTGGATTTCAT-TTAG-GTTAAAA-TACATGTtatataggggtcgataccctacatttaatctaaataaaactttgtctacacaatgacataagtttttggatttcatttaggttaaaatacatgtctt
gi|9 : gttcatatgtaccctgtgcacttcaaaacataggcacgaactctacattgcagcctaaagtgtggtggtcaAACTTCAAAACATAGGCACAAACTTTACATTCTAGCGATAAAT-T-TGGTTGTCAAAACTCCACATT-----CAAACCAA-TG-T-TAGAGGTCAAAACTCTACATTCAAAC-------AA--AT-ctt
gi|9 : gggcacttgacctgaaaatgggtacatctgtgccctgtaAAACTCCACATTCAAACC---AATGT-TAGAGGTCAAAACTCTACATT-----CAAACAAATTA-TACAGGGATCAAA-----ACATTTAATC------TAA--AT-AAAAC-TTT--------G---------TC----TACACAA-------tatacagggatcaaaacatttaatctaaataaaactttgtctacacaatggcataagctc
blockSeqs : T G T TA GAAAC A CAC A TATTAGT TT G G GTCTAGGCAATG C C TGTATAC GT C AG A AA T GTAG AAAAAA TA GTGGTATTAGC CATTAA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T G T T A GG C
blockSeqs : A G A GT . C TA G T . . . GTCTACACAATG C C . CT . TA A A T . G . CGGTACTTTT . G .
blockSeqs : T G T T . A TA A T . . . TATTAACAGTG T T . CT . AG A A T . A . ATAT .
blockSeqs : T G C T . A TA G A . . . ATATAGGG C T . CT . AG A A C . T . TTTG .
blockSeqs : G A T T . C TA A T . . . GTCC T G . TT . AG A . T . G . TTTC .
blockSeqs : C A T T . C TA A A . . . GTCT T T . C . AG A . . . T . TTTT .
blockSeqs : T G A T . A TA A T . . . GTG C T . C . AG T . .
blockSeqs : T G C T . A TG G T . . . GTG C C . . . A .
blockSeqs : C T G . C TA A T . . . CT . . . . . .
blockSeqs : C T T . A . A . . . . A . . .
blockSeqs : C A . . C . G . . .
blockSeqs : . . . . A . A . . .
blockSeqs : . . . A
blockSeqCons : GTG********************** ****
originalCons : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
finalCons : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTTGTG----------------------ACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACAATATGCACCATAAATATTTTGAACTCGGGATTTAACTTTTTAGATATAGAATTCAATTCAGAGATTGATTTTTTTTAAAATATATACATCTGGGTCAACTTGGAGATGTAACGTTCTTTGAAA
Unaligned ( gi|14 ): GGTGTAACAGGACTGAGTATCTAAACCATGAAGATAGACCGAAACAACGT
Unaligned ( gi|15 ): TGGACACTTGATCTGATAATGGGTCCATATGTGCCCTGTAAACTTTAACA
Unaligned ( gi|16 ): GTCTCCCTGTACAATCAATTTATCATATAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 5555555555555555555555555 1111111 11 2222 111111 22222222222222222 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 11
lowQualScore : 1 2 4 0 666 77777 3 777 1 0 3333333 44 3 3 0000000000000000000000000 1 2 1111111 44 4 11 3 11 2 4444 555555 77 22222222222222222 666666 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 5 1 1 1 33 6
lowQualScore : . . . . ... ..... . ... . . ....... .. . . ......................... . . ....... .. . .. . .. . .... ...... .. ................. ...... . ................................................................................................................................................ . . . . . .. .
lowQualScore : 1 1 0 5 555 11111 1 999 4 8 2222222 22 1 6 6666666666666666666666666 2 6 8888888 77 0 88 4 22 0 3333 333333 99 44444444444444444 444444 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 33 7
consensus : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
Reference ( family-2130 ) : AACTTCAAAACATAGGCACAAACTCTACATTGCAGCCNAAAAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGGGTCGAAACTCTACATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTCTTGGATTTCAT-TAAGAATAAAAA-TACATGTG----TCTTAT-----NAAC--A------TT----TT---TTTTGTATTT------GAAGAAAATGTATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATCCAATATTGAATCCTTTCGAATGTNATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTNAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATANTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATGGCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|1 : AACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGTTTTAA-CATAAATAAAAA-TACATGTGGTAGTCTTAT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGATAATGTATTGCAGTGAAAAGCATTGACATAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAGAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGTATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATT-ATATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAA-TATTGGTAAATATCCAATATTGAATCCTTTCGAATGTAATATTATGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTAAATGACATATTCATAATTATGACGATTGTGTTGTCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATACTTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTATTATTGATAT-GCTCCCCTGAAAATTGGACGGAATCAAAATTATCAATCA
gi|10 : AACTTCAAAACATTGACACGAACTCTACATTGCAATCTAAAAT-T-TGGTGGTCAAAACCCTACATT-----CAAACAAATTA-TA-------CAAAACTCTAAATTTAAAC------TGA--ATGGAAAC-TGT--------C---------T------ACACAA-------
gi|12 : catatgtgcctcgtaAT-TAAGAACAAAA--TACA--TG----TCTTAT-----GAACTAA------AT----AT---TTTTGTATTT------GAAGTAAATGTAtgacatttatatataagctgt
gi|13 : aacagaatattatcaaattaaGGTCAAAACTCTAAATT-----CACACCAAT---TATAGGGGTCGAAACTCAACATT
gi|2 : ggACTTCAAAACAAAGTCACAAGCTTTACATTGCAGCCAAACAT-T-TGGTGGTCAAAACTCTACATT-----CAAACAAATTA-TATAGGTGTCAAAACTCTGCATTTAATC------TAA--AT-AAAAC-TTT--------G---------T-----GACACAA-------GCTGTTGGGTTTTAA-CATAAATAAAAAATACATGTGGTAGTCTTTT-----AAAC--A------TT----TG---TTTTGTATTT------GAAGAAA---TATTGCAGTGAAAAGCATTGACACAACTATACATTTCACCATTTTTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCAGATAAAGGGAGTTCCCCCTTTCCGCACCCAGGATTGTCCCTACAGTACAGATGGGTTACGCATTAAACATTGATATATAATCTATGGTTGAAATAAGTTATGTTGTTGGTTATTTTAATGTTGTTTACTAGTGACTCTGCAACGAGTTCATATTTACATTTTTGTAGAGTTGAGAACGTATATCTATCTTATGGAAAAAAAGTATTGGTAAATATTCAATATTGAATCCTTTTGAATGTTATATTACGATATATACTGAATTTGACTTTTGTATATATTCCCAGAATATTACATTTATAATCCCGTGTGTGCGAGATATAACATTCTTAGTCTGAACAGGTGAACATATCCAACTATGTTTACATTTTATTTAACGACATATTCATAATTATGACGATTGTGTTGCCAGCATAAGAAAATTAAATTGATTTGAACTGAATATATAATAGTCTTATTTATGTGCATATAATAATTGTTTTGTTTTAATATGTTTATGTATTGTTCACTTTTGTAGATATGTTAGCTTGTACTTGTGCATTTGTGTTATTGATATG-CTCCCCTGAAAATTGGACGAAATCAAAATAATCAATCA
gi|3 : ATATGGCTCTCCTGAAAATTGGA-GGAATTAAAATTGTAAATCA
gi|4 : acAACTTCAAAACATAGACAGTAGCTCTACATTGCAGCTTAAAAT-T-TGGTGGTCAAAACTTTACATT-----C-GAC---TCACTATAGTGGCCGAAACTCTACATTCAAAC------AAATTAT-ATAGC---A--------G---------T-----GA---AA-------ACTC-TATATTTAATCTA--AATAAAA--------CG----TTTTAT-----TAAC--A------GTGGTATTAGCTCTTGGATTTCATTAAGAATAAAATACA-TGCAatctacatcatcttgaagattgaactttcttagaaatacagattttaactcatagactggactttttttaagatatatacaatgtacatgtagttggagattgggcattctttaataaattatttaacttggcgcttattgtgttgttgttttcacaatatgtacacgaaataaacgtggggattgaacttttaattacagataaaaattatataattcaacttggagattgaactgtttcagttttacatactatacatctaggtcatcttagaaaattatttttttaaatacactgaactcaatttggagatttaattttgaaatacataataaaacttggatatggactttttaagattggattaaacattccat
gi|4 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgAAACTTTACATT-CGACTCACTAT----AGTGGCCGAAACTCTACATT-----CAAACAAATTA-TATAGCAGTGAAAACTCTATATTTAATC------TAA--AT-AAAACGTTTTATTAACAG---------T-----GGTATTA-------GCTCTTGGATTTCAT-TAAGAAT-AAAA-TACATGCA----TCTTATAAAAAAAAT--A------TT----TC---TATTGTATTT------GAAGAAAATGtcttataaaaaaaatatttctattgtatttgaagaaaatg
gi|5 : tgggggcacttggcctgaaaatggatacatatgtgttctgtgaacttcaaaacatagacagtagctctacattgcagcttaaaatttggtggtcaAACTTCAGAGAATAGGCAAAAACTCAACATTGCAGCTTAAAAT-T-TGGTGGTCAAATTTCTACATT-----GAAACCAAT---TATAGGGGTAAAAACTCTACATTAAATCTATTAGTAA--GT-AAAAC-TTC--------GTCTAGGCAAT-----GGCATAC-------GCTCTTGGATTTCAT-TAAGACTAAA----ACATGTG----TC-TAT-----GAAC--ACGGTACTT----TT---TTTTGTATTT------GAAGAAAACGTATTGCA
gi|6 : gtaaatgggtacatatgtactctgtaAACTTCAAAACAGAGGCACAAACTTTACATTACAGCCTAAAAT-T-TGAGGGTAAAATCTCTACATT-----AAAACCAAT---GATAGGGATCAAAACTCTGCATTCA-----------------AACAC-TTT--------A---------TATAGGGATCGAA-------ACTC-TACATTTAAT-CAA-AATAAAA
gi|6 : gggacatttgacctaaaatggggaaatatgtgtaGGTAAAATCTCTACATTAAAACCAATGAT----AGGGATCAAAACTCTGCATT-----CAAACACTTTA-TATAGGGATCGAAACTCTACATTTAATC------AAA--AT-AAAAT-TCT--------G---------TC----CATATAATGTATACGCTCTTGGATTTCAT-AAAGAGTAAAttctgtccatataatgtatacgctcttggatttcataaagagtaaa
gi|7 : gggacatttgacctaaaatggggaaatatgtgtaaacttcaaaacagaggcacaaactttacattacagcctaaaatttgagAGCTTCAAAACACAGACAAAAACTCTGCATTGCCGTCCAAA-T-T-TGGTGGTCAAAACTCTTCATTGAAACCAAACAAATTA-TACAGAGGTCAAAACTCTACATTT-ATC------TAA--AT-AAAAC-TTT--------A----------------------------------------TCAT-TAAGAAT-GAAA-TACACGTG----TCTTAT-----TAAC--A------TT----TT---TTTTATATTT------GGAGAAAATGTAT
gi|8 : gtggggcatttggcctggaaatgggtacaaatgtgccctgtaACTTCAAAACATAGGCACGAACTCTACATTGCAGCCTAAAGT-G-TGGTGGTCAAAACGTTACATT-----CAAACCTAT---TACAGGGGTCAAAACTCTAAATTAAAAC-------AA--AT-
gi|8 : gttcatatgtaccctgtgcAAACGTTACATTCAAACCTA---T-TACAGGGGTCAAAACTCTAAATT-----AAAACAAATTA-TATAGGGGTCGATACCCTACATTTAATC------TAA--AT-AAAAC-TTT--------GTCTACACAAT-----GACATAA-------GTTTTTGGATTTCAT-TTAG-GTTAAAA-TACATGTtatataggggtcgataccctacatttaatctaaataaaactttgtctacacaatgacataagtttttggatttcatttaggttaaaatacatgtctt
gi|9 : gttcatatgtaccctgtgcacttcaaaacataggcacgaactctacattgcagcctaaagtgtggtggtcaAACTTCAAAACATAGGCACAAACTTTACATTCTAGCGATAAAT-T-TGGTTGTCAAAACTCCACATT-----CAAACCAA-TG-T-TAGAGGTCAAAACTCTACATTCAAAC-------AA--AT-ctt
gi|9 : gggcacttgacctgaaaatgggtacatctgtgccctgtaAAACTCCACATTCAAACC---AATGT-TAGAGGTCAAAACTCTACATT-----CAAACAAATTA-TACAGGGATCAAA-----ACATTTAATC------TAA--AT-AAAAC-TTT--------G---------TC----TACACAA-------tatacagggatcaaaacatttaatctaaataaaactttgtctacacaatggcataagctc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCACAATATGCACCATAAATATTTTGAACTCGGGATTTAACTTTTTAGATATAGAATTCAATTCAGAGATTGATTTTTTTTAAAATATATACATCTGGGTCAACTTGGAGATGTAACGTTCTTTGAAA
Unaligned ( gi|14 ): GGTGTAACAGGACTGAGTATCTAAACCATGAAGATAGACCGAAACAACGT
Unaligned ( gi|15 ): TGGACACTTGATCTGATAATGGGTCCATATGTGCCCTGTAAACTTTAACA
Unaligned ( gi|16 ): GTCTCCCTGTACAATCAATTTATCATATAAA