lowQualScore : 1111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 333333333333333 22222 22222 2222222 3333333333333333333333333 22222 4444444444444444444 111 22 3333 5555555555555 111111 111 66666666666666666666 2222222222 111 1111 111 1 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 1 111111 33333333333 77777777777777777777777777777777777777777777777777777777777777777777777777777 2222 11 222 2222222 33333333333333333333333333333333 11111111 2222222222222222222222222222222222222222222222222222222222222222 1 111 1 22222 1 11 555555555 222 77777777777777777777777777777777777777777777777777777777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 1 2 11 11 111111 5555555555555555555 333
lowQualScore : 4 4 3 00 1 000000000000000 8 55555 2 44444 2222222 8888888888888888888888888 00000 4 6 5555555555555555555 0 111 22 5555 4444444444444 6 6 888888 9 3 3 333 11111111111111111111 4444444444 99 222 8 2 6 6 9999 0 000 1 8888 3 888 5 0 66 3 00 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 999 7 2 4 6 4 6 888888 1 3 6 4 9 2 44444444444 9 2 33333333333333333333333333333333333333333333333333333333333333333333333333333 3333 4 3 0 00 0 0 22 4 5 5 000 5 5 0000000 2 888 777 99999999999999999999999999999999 3 0 77777777 0 8 3 1 6666666666666666666666666666666666666666666666666666666666666666 99 2 0 0 3 111 1 6 44444 2 8 00 333333333 111 5 66666666666666666666666666666666666666666666666666666666666 9 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4444 8 5 0 77 44 1 44 44 9 222222 9999999999999999999 2 55 2 9 111
lowQualScore : . . . .. . ............... . ..... . ..... ....... ......................... ..... . . ................... . ... .. .... ............. . . ...... . . . ... .................... .......... .. ... . . . . .... . ... . .... . ... . . .. . .. . ..................................................................................................................................................................................................................................................................................... . ... . . . . . . ...... . . . . . . ........... . . ............................................................................. .... . . . .. . . .. . . . ... . . ....... . ... ... ................................ . . ........ . . . . ................................................................ .. . . . . ... . . ..... . . .. ......... ... . ........................................................... . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .... . . . .. .. . .. .. . ...... ................... . .. . . ...
lowQualScore : 0 0 7 33 0 000000000000000 3 00000 0 88888 5555555 8888888888888888888888888 88888 4 7 7777777777777777777 3 777 55 5555 0000000000000 7 7 888888 0 5 7 555 22222222222222222222 7777777777 22 777 0 2 7 7 8888 3 000 7 1111 0 555 6 8 99 1 22 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7 777 3 7 0 5 8 7 888888 8 7 7 0 3 5 55555555555 3 2 00000000000000000000000000000000000000000000000000000000000000000000000000000 7777 7 0 7 00 1 7 33 3 7 7 666 7 7 4444444 8 888 666 22222222222222222222222222222222 6 1 55555555 8 5 4 7 0000000000000000000000000000000000000000000000000000000000000000 22 2 7 8 3 777 0 4 88888 0 2 88 222222222 666 8 99999999999999999999999999999999999999999999999999999999999 5 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0000 0 0 0 22 00 8 88 44 6 444444 5555555555555555555 2 55 2 2 555
consensus : CTCTNAGCGTAANTGAAGNCTGNTCAAA-GT---AAT-AAA--CCTTCT-AATGAATTTGATTCTNCAGTTGTAAGTTN--AGGTATCTCATCC---ACATTCNGAAAATT---CTTCATTT----AAATTNA-TATCTATTNGA--GT--T--T--CATCTCTA---CTTGAATAT-AAGTTTTTTATAAAA-N-ATT--TG-GTTTCT-T-TN-----AAAATATCTGN--CTGAT---TN-GTAN-AATAGCTT-CCATCGTC---T---TTT--TCNATTTTTGGNATNA-TTTTAC-TGANATAATTA---TGTTNT-TCTAAGTTACAAAA-ATANTTTGAAGGTTTTT--CACCC-TCTTCAA-TN-A-CTG-AGCT-GCTCTTGATCTTACNA--TA-G--CC-TTCATTTTANGT--T----TNCG-TA-T-ANT---TANA-A-ATTCATTTTT---TA---ATT-T-T-CTAA--TTCG-TCG-ATAT----T-----------G---T-AAGGT---T---TT--A-ATTT-----T-T-----TT-TCT------TAAT-TGT-CTATTT--T------A--TTT--ATNAA-----NT--TTT-TTTT---T-TGTCAATCTT--TTTT--T-TTT-TA-A-AACTTGCATATGANATNGATTTTCCTC--TNAATTCCATNANTAATGTTTCNAGAAATAGCTGGT-CGTTAAT-ACGAATTGTATTTTNTCATTTGGAATATT--GT-TCAATATTNT--N------NATGTTATATAC-------TGGTAA-AC-ATA-TTGCTTTTTN---ATTTCNTCTATTTTNTCATTNATTATGTTTAAATAGTCTATATCACTTAG-AA-GAGNGTTA-TTGTG-CTTCCA-TA--GTCCCTT---ACCA-GGTT--CA--AA--AT----C---GT-TAAAA--NAAATATTTAAA-ATNATCATTGAATGGTCNGATCTGTAACTAGATTCAATA-T-G-A-CATTTNCT---TA---ATG-A-NGAN-G-GTAA----T--TCNGA-ACTAAN----AAGA--AATCNAGTCTTGCTTGTTT---TAAAGGTNTTTTN-CTTCTCCATGTATATCTTTTTAANNT-TG--GATNNAATTCTCTAAANGGGTCTATCAGATTATANTTNT---CTNTT---ATTTNTAAN--A-CTT-------TTTCCCANGCGTTCTTATTGTTT---ATAT---TNT-GTAATTA-AGTAATCTAAC-TTNGAGTCTT--GAACAAGATTAAAATCGCCACATATNA-TA-TA-GT-TCA-TTAC-T----A---TNTCAC---TTCTGNTCTTA----------TCAAAANATTATT-AAAAAAG-A--TGGG--G--AGTCNNTATT-NGGTCCATATANNGTAACAAGTGTNAATC--TGTTNTTA-TTTACTGT--TANATCC---G-C--AA---TNATGA--A-ATTAC---CCTCACGG---TCAGA--T---ATGTGCA---TGTA--TCGTATANTCTAAGTTTTTACTAAATAA--AATCGCA-ACACCCTCGGGN---ATTTGACTTGACC-GAANAA--AAAA-N--A-CAG-TCATTNCCCCATTGTGTACGGA---TA-AA-ATTTTC-ATGTAACTT-GT-T--------A---AATGAGTGTCTT-GTAAACAATATATATGACACTTTTTNNCTTT-TAGATANTN-AAATACATC-AANT-CTTTTCTG-GTTGAACC---A---AGGCCTCGGCAATTAACGGNGATAGAAT
Reference ( gi|1 ) : CTTTAAGCGTAATTGAAGCCTGCTTAAAAGT---AATTAAA--CCATCT-AGTGAATTTGACTCTATTGATGTAAGTTT--ATGAATTTCATTTGTTACGTTTAAAAAAAA---CGTTATTT----AAGTTTA-TATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA--AAGTTGCTGATAAAA-A-ATT--TGAGCTTCT-T-TA-----AGAATATCTGT--TTGAT---TA-GTAA-AATAGCTT-CCATCATT---T---TTT--TCAAGTTTTGGTATTA-TTTTAC-TGGAATAATTA---TGTGAT-TCTAATTTGCAAAA-ATAATTTGAAGGTTTTT--CATCC-TCTTCAA-TA-A-TTT-AGTT-GCCCTCGATCTTATCA--TA-GCTCCACGCATCTTAAGT--T----TTCG-GA-T-ATT---TATA-A-GTTCATTTTT--GTA---ATT-T-T-CTAA--TTGG-TCG-ATAT----T-----------G---T-AAGGT---T---TT--A-GTTT-----T-T-----TT-TCT------TAAT-TGT-CTATTT--T------A--TTT--ATCAA-----AT--CTT-TTTTAACT-TGTCAGTCTC--TCTC--T-TTT-TA-A-AACTTGAATAAGATATTGACTTGCCTC--TGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGAT-CGTCTATAATAAATTCTATTTTATCATTTGCAAT-TT--GT-TCAATATTAT--A------AAAGTTATATAT-------GGGTAATGC-ATT-TTGTGCCTTA---ATTTCTTCGATTTTATCATTTATTGTATTTAAATAGTCTATATCATTTAA-AA-GACTGTTA-TTGTG-CTTCCA-GA--GACCTTT---ACCA-GGTT--TA--AA--AT----T---GT-TAAAA--GAAATATTTAAA-ATAACCATTGAATGGTCGGATCTGTAACTAGATTCAATA-T-G-A-CATTTATT---TA---ATG-A-AGAG-G-GTAAT---TTTTCTGACACTAAC----AAAA--AATCAAGCCTAGCCTGTTT---TAAAGGTGTTTTA-CGCCTCCAGGTATAGCGTTTTAATGT-TC--GATAACATTCTCTAAATGGGTCAATCAAGTTATATTTTT---CTTTT---ATTTCTAAA--A-CTT-------TTTGTTGTGCTTTTTTATTGTTT---GTAT---CAGAGTAATTGCAGTAATCTAAT-TTCGGGTCTT--GTACAATGTTGAAATCTCCGCATAAGA-CA-TACGTTTCA-TTAT-T----A---TAT-AC---TTCTGCTTTTA----------TCAAAAGATTATCGAAGAAAA-A--TGGG--G--AGTCTTTATT-GGGTCCATATAAGGTTATAAGAGTAAATC--TATTATTA-TCTACAGT--TAAATCT---G-C--AA---TTATGT--A-ATTAC---CCTCAGGG---TCAGAGGT---ATGTGCA---TGTA--TAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACT---ATTTGAGCTGACC-GAGGAG--AAAA-G--A-CAT-TTATTACCCCATTCTGAATTAA---TA-AA-ATTTTCTATATAAGTT-GT-T--------A---AATGAATATCTT-GTAAACAGTATATCTGACAGTTTTTTGCTTT-CAAATAATC-AAAAACATC-AAGT-CTTTTATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAATTGTAAGGTCAGTCGCCATTGTGTGAAAATCTATATAAAATGAAGGTTAAATATGCATGACCTAGACATAGAGGAATACTCAAACTAAAAAACAAAAAAGCTACAAAAGTGATCAACATATTAATGCTGTGCTTAATAAATTGTGAAAAAATGCACATCATTTTGGTGTTAAAAGATTGAAAATGATGTCAATGTAATTTACAATTATTGATACAAA
gi|6 : CTTTAAGCCTAATTGAAGCCTGGTCAAAAGT---AATTAAA--CCATCTTAAT-AATTTGACTCTACAGATGTAAGTAA--AGGAATTTCATTTGTAACGTTTAAAA----TTTCATTATT-----AAGTTTA-TGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA--AAGTTGCTGATAAAAGA-AT----GAGCTTCT-T-TA-----AGAATACCTCT--TTGAT---TG-GTAA-AATAGCTT-CCATC-CC---T---TTT--TCAGGTTTTGGTATTAGTTTTAA-TAAAATATTTAATACGTGAT-TCAAATTTACGAAA-TCAATTTGAAGATTTGT--CATCC-TCTTCAA-TA-A-A---AGTT-GCC------CTTG-----------------ATTCTAA-----------C---A-T-ATT---CAAA-A-GCTCATTTTT--GCA---ATT-T-T-CTCA--TTGG-CCG-AGAT----A-----------G---T-CAGGT---T---TT--G-ATTT-----T-A-----TT-TCT-------AGC-TGT-----TC--T------A--TTA--ATCAA-----ATATCTT-CCTTA--C-TGTCAATGTC--TCT-----TTT-CA-A-AATTTTCATAAGATATTGACTTGCCTC--TGGTTTCCATTAGTAGTGTTTCAATCAATAG---------------------CTATTTTATCATTTGCAAT-TT--GT-TTAATATTATTGAAGTTATAAAGTTATATAC-------GGGTAATAT-ATA-TTGTACCTTT---AT-------ATTTTATCAGTTATTATATTTAAGTAGT-TATATCATTTAA-AA-TACTGTTA-TTGTG-TTTCCA-GA--GACCTTT---ACCA-GGTT--CA--GA--AT----T---GT-TAAAA--GAAAT-TTTAAA-ATAACCATTGAAT-----GATCTGTAACTAGA
gi|2 : CTCTTAGCGTTACTGCAGACT-CTTCAA-TT---GATAAAATACCTTCT-ATAGAGTTTGATCCAACCGTTGTAAGTTTTGGTGTATTTAATCC--TAC--TTA------------TTATTTTTCTAAATGTA-TATCTTCTAG----T--TGAT--TGTCTTTA---TTTGAATA--TATTTTTTTATAAAA-TTCTT--TGA--TTCTGT-TA-----AAA---TTTGGAATTGATCTTTA-ATCA-TGTCGC----CATTGTG---T---TTT--TATAGTTTAGGGATTA-GTTTAGATGAAA-AATTA---TGTTTC-TCTAAATTACAAAA-ATATTTTGAAGTTTTTT--CCCCA-TCTTCTA-TG-A-TTTCAGCTCGCC----ATCTTACTA--AATGACCC-TGCATTTTGTCT--T----TTCTTAA-C-ATT---TG-A-A-GTCAATGTTTAAGTA-----T-T-T-CCA---TTGACTGG-ATTT----T-----------T---TTCAGAT---G---AG--A-GATT-----G-T-----GT-TCGAG----TAAT-T---CAATTTATT------AATTTT--ATTAA-----TT--ATT-TTT---CTCTATTA-TCTT--TTT---T-TTT-TG-T-AACTTGAATATGATATAAATTTCCCTC--TCAATTCCATGAGCAATGTTTCTAGGAATAACTGGT-CATTTATTACGAATTGTATTTTATTATTTGGTATATC--AT-TTA-TGTTTT--C------TGTGTTATATAC-------TGACACTGC-ATA-TTGTTGTTTG---ATTTCGTCTATTTTTTCATTGATAGTTTTTAAATATTCAATATCACTAAG-AA-GGGAATTG-CTGTG-TTTCCA-TA--ATGGTTT---ACCA-GGTA--CA--AA--AT----C---AG-TAAAA--TCTATATTTAAT-ATTATCATTGAATGGTCAGGTCTGTAGCTAGATTCAATAGT-G---CAATTACT---TATAGATG-GGAGAA-GTGTAA--------CAGATACTAGA----AAAA--AATCAAGTCGTGCTTGTTG---TAAAGGT-CTTTATCGCCTCCATGTATATCTTTTCA--GT-TCTGGATGTAGTTCTCGAAAATGATCTATCGGGTTAT---TTTGAACCATT---ATTTCTAAT--A-CTC-------TTTCTCAAGCGTTCTTATTGTTT---ACATGTTTA---TAGTTGAAGTAATCAAGCGTTCGA-TCTA--AAACTAAATTAAAATCTCCACACATGA-CAATA-G---CA-TTAT-T----ATTTTAT-TG---TTCAGTTTTAA----------GTACAAGATTACTAAAAAAAG-A--CGGT--G--AATCATTATT-GGGACCATAAAGGGTTACAAGTGTAAACC--TGTTGTTA-TTTACAGT--TAAATCT---G-C--AA---TGATAA--A-ATTAC---CCTCACTA---TCCGAA-----ATGTG-ACTTTGTA--TTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC--AACCCCTCGG-G---ATGGGGGACAACCAGAACAA--AACA-A--A-CAA-TCATTTCCCCATTGCGTACGAA---TA-AA-CTGTTC-A-GTAGTTT-GTGT--------AG--AATGAATGTCCT-GAAGGCAATACACATGACATTTTTTGGCTTT-TAGATAGTT-AAATAAATC-AATT-CTTTTCTCTGGTGAACT---A---AGACCTTGGCAATTAAC
gi|8 : tgAACGAAAGTGAAATTTGTTCATATGTCAAAAT---A--CCTTCT-AATAAATTTGATTCTTCAGTTGTAAGTTT--AGGTATCTCA------A-ATTCTGAAAATT---CTTCATCT----AAATTAA-TATCT-TCA-A--GTACT--G--CATCCCTA---CTTGAATAT-AAGTT-TTCATAAAATT-GTT--TG-GTTTCT-TGTA-----A-AATTTCTGC--CTGAT---CT-GT-T-ATTATTTTACCATCTGA---T---TTT--TCAATTTTTGGAATAA-TTTTAC-TGCTAAAATTA---TACGAC-TCTAAGCTACAGAA-ATATTTTGAAGGTTTTT--C-TCCGTCTTCTA-TACA-CTG-A----GCTCTTGATCTAATAAGGTA-G--CCATTCATCTTATGT--T----TACG-TACT-AAT---GATA-A--CTCATGTTT---TA---GTT-G-T-TCAA--GTCG-TTGTGTATGCTCT-----------GGGAT-AAGGT---TATGTTCCA-ATTT-----T-T-----TTATTTCACATATAAT-T-T-C-ATTT--TCTTGTGA--TTC--ATTTA-----AT--TTT-TTTTAtgacaatatctatatatctgtcat
gi|3 : gatTCTGATTCTTCAGTTGTAAGTTA--AAGTATCTCA------A-ATTCTGAAAATT---CTTCATCT----AAATTAG-TATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATAT-AAGTT--T--TCACA-A-ATTGTTGTTTTTTT-T-TGTGTGTAAAATTTCTGC--CTGAT---CT-GTTT---TA--TT-TTAACATC---TGATTTT--TCAA-TTTTGGAATCA-TTTTAC-TGCTTTAGTTA---TACGAC-TCTAAGCTACAGAA-ATATTTTGAAGTTTTTTTCCATCC-TCT---A-TA-AACTG-AGCT-A---TTGATCTAACGAGGTA-GC--CGTTCATCTTATGT--T----TGCG-TA-TTAAT---GATA-A-AT-CATGTTT---TA---GTTGT-T-C--A--T--G-TCG-ATGT----TTATGCTCTGGGA---T-AAGGT---T---AT----GTTC-----C-T-----TT-TTT------T---------TATTT--C------A--CAT--AT--A-----AT--TTCATTTT--CT-TG-CAAT-TCAATTTT--T-TTTGTA-A-A--TAGAGTATGAAATAGAATGTCCTC--TTAATTCCATAAACAATGTTTCTAAAAATAGCTGAT-CGT------TAACTGTTAATTTGTTATTTGGATTATT--GT--CTATATTTT--C------AGTATTATAGAC-------TGGTAAAGC-GTA-TT------TA---ATTTCCTTTATTTTATTATTTATTGT---CAAATAGTCTATATCACTTAA-TA-GAGAATTA-TTATG-TTTCCATAA--GGGC-TT---ACC----TC--TAACAA--AA----T---GTGTAAAA--TAACAATTTAAA-TTTATAATAGAATGGTCTGACCTGTAACTAGCGTCAAC--T-GTA-CATTTTTC---TACTGATGCA-AGAA-G-A-------TTTTCTG----TAAC----TAAA--AA-GAAGTCTTGCCTGCTTAAATAACGTTTTCTTA-CA---TCATGGATATCTTTTTAAATC-TG--GATACAATTTTCTAAAGGGGTCTATAAGATTATAGGATG---ATTTT---A--TCTAAAGTA-TCT-------TTTCCCAGGAGTTTTTATAGTT---------------GTACTT------ATCTAAT-TTGGGGTCCT--GAACCAAGTTAAAATCGCCTAATAATACCA-TA----TCA-TTAC-T----T---TTT-ACAGTTTCTGCTGTCA----------TCATAATCCTAT--AAAAAAA-ATCTGGA--G--AGTCAGTATT-TGGCCGATATAAAG-AATGGGAGTTAATC--TCTTATTC-TAAACTGT--TATATCA---A-C--TG---TTATTC--A-ATTCC---CCTCTGGG---TCAGATAT---ATAATTA---TGAA--CCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGC---ATTTGATTT--TC-CAGAAC--TAAA-T--A-AATATCATTTCCCAATTCTGTGCGGA---TG-CG-ATTTTCAGTAT---TT-GG-T--------ATAGAATGAAAATCTT-TTAAACAATATATATGACACTTCTTCGATTT-TACATAATT-GAAAACATCTAAATGCTTTT-T-AGCTGAACC---A---AGGCCCTGACAATTAACtaactagagtatgaaat
gi|11 : ttagataacgacagtgaaatttgttcatatgtcaaaataccttctaaccTTC----AAGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC--ATAAAA-GGATT--TTGTTTTAT-T-TT-----AAATTATCTGA--TTGAT---TG-TCAATAAT-GTCT-CCATTATC---T---TTTACTTTTTTTTTGAAATAA-TTTTGC-TCACAAAATTA---TTTTTT-TCTAAATTGCAAAA-A-AGTTTGTTGGTTTTT--CACCT-TCTTCAACCC-A-CTT-A----GCTTTAGATCTCACTA--TA-TGTCCTTTGATTTT--GTCAT----TACGTAA-C-ACT---TTCA-A-A-TCATTCTT---TA---ATT-T-TGTTAA--TTtgacagaagttttacttcagtca
gi|9 : gacatttaatacaatgtttttgatgcctcagcacatgtaatttttccttctatactgttggattcgtcttgcgataattttggcacgtcagtattttttatatcattA-TATCTATCTGCTCGT--T--T----TCACGA---CAGGAATA--TAGATTTTTATAAAA-ACACA--TG-GTTTCT-T-TT-----AAAATATCAGT--CTGAT---TTTGTAC-TATA-----TCATCATTGTCT---TTT--TCTATTTTTGGTTTTG-TTTTGC-TGACATAGTTA---TTTTTT-TCTAAATTACAGAA-GAAATTGGATGGTTTTT--CACCT-TCTTCAACCC-A-TT----TT-GCTTTTGATCTTATCA--TA-TAACC-----TTTT-AGT--T----TTT-----T-ATTCCGTAGA-ATATTCAAT------TA---ATT-T-T-TTAA---------A-ATGT----T------------------AGATTCCT---CT--ATATTT-----T-C-----TT-TAT------TTAG-TGA-TT-TTT--C------AATTTT--ATCAA-----TT--GTT-TTcattaaccttattttggtttaaagatatttct
gi|16 : attgaaagtgaagtttttgatgcctctgaataagtaatgttttcttcttaattttgtgaatcattgtaagataattttggcacatcaaactcttttaattctttttccagatcaTTC---TGTTATGTTTAAGTTGCAAAACATACTTTGAA-GTTTTT--TATTCATCATCAA-TA-A-aataat
gi|4 : ttttagcttgttttgatatattcacttgttttgcaatgatgctactaccatcaggcatT-TCCAAATTGCAAAA-GAAATTTACTGGTTTTT--CCCCA-TTTTCAA-TCCA-CTG-AG----CTCGTGATCTTGTAA--TA-----CA-GCCTTTTAATT--TATCTTTCC-TA-T-ACA---TATCTA-ATTCAACCTT---TA---ATG-TGT-CTAG--TTCT-TCT-ATAT----T-----------T---T-GATCA---T---TT--A-ATGA-----A-T-----TT-TCA-------AAT-TCTTCTATTT--T---------TTT--ATGAATAACAAT--TTC-CCTT---T-TGTC--TTTT--TCTT--T-TTT-TATATAACTACTATATGATATAGTTTTGCCTC--TGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGT-CATTAATTATGAACTGTAATTCAGAGTTTGGAATATT--A--CCAATATTGT--C------TATATTATATAT-------TGGT-ACAC-AGTATTGCTTTTTT---ATTTTTGAAATTGTTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGA--ATTA-TTGAA-TTTCCA-AA--GTCCCTT---CCCATGATC--TA--TGTTAT----TTAGGT-TCAGACTGAGACATTT---------TATTGAATGATCGGATTTGTAACTGGGTTCAATA-A-A-A-CATTTCC----------TG-A-CGTGTG-ATAATAAATCGCCTGTCACTAGA----AAGA--AGTCTAATCTTGCTTGTTG---TATTGGTTTTTTT-CTTCTCCAAGTGTATCTTTTTAAATT-GG--GATTATTTTCTCTGAATGGGTCTAACAA-T--TGTTTAT---CATTTATAATTTGTAAA--AGCAT-------ATTTCTA-GCATTTTTATTGTTC---ATAT---TTTTATAATTATAATAGTCTAAA-ACAGGATCTT--GAACAAGATTAAAATCACTACACCAAA-TA-AAAGTGTCATTTCC-T----A---TTT-TC---TCCATCTCTTG----------T-AAAACATTCTT--ATAAAACA--TAGGTTG--A-TCTGTATT-AGGTCCGTATATTGTAGCAAGTGTTAA-C--CGTTTTGA-TTCA-AGTAATAAATCC---A-G--AG---CTAAAA--A-ATTAC---CATCCCTG---TC-----TTTCATCT-CA---TGTACTTTGTAT--TCTACATTTTTACTAAATAA--AATCGCA-ACACCC----CTCAAATTTAACCTTGCT-GA--AC--TAAA-GTAA-CAG-TTACTGTTCGATTGTGTAT--A---TATAA-ATTTTT-------GTT-GT-TCTTCTGTAA---AATGTGTGTCTT-GTAAACAGTAAATATGGTACCTTTTTTCCTT-TAAGTACTG-AAATATATC-AAGG-CATTTCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATaatgagcgcgtgatcgtatgaaatcaccgttcattttctttttgcgtaaagctatgagtgattctttaaatttattcacattgttt
gi|5 : ttTCCATTTTT--GTATGGATT-C-T-CCAAATTTAA---A-AAAG----C-----------G---T-AGAGT---C---TT--T-CTTT-----TGTAAGAATT-TCT------AAAT-TAT-TTATTT--T---------TTC--AATAA-----GT--TCT-TTTT------------CTG--TTTT--T-TTT-TA-T-AACTTGCATATGAAATTGATTTTCCTC--GTAACTCCATCATTAAGATTTCAAGAAATAACTGGT-CATTAATAACAAATTGAATATCTTCATTTGGGAT-GTCAGT-TAAATTTTCT--G------TA--TAATAAAC-------AGGTAA-ACAATA-CTG---CTTATTTATTTCATCTATTTTGTCATTGATTATGGATAAATACTCCCTATCATATAG-AA-GAGAGTTG-TTGTG-CTTCCA-TA--ATCCCGT---ACCA-TGTT--GT--AA--CT----C---CT-TTAAA--CAAAGTTTTAGA-ATAACTATAGAATGGTCAGATATATAACTAGATTGAATG-TCGCA-CAT---CT---TA---AT----ATAT-G-GTAAA---AAATCATAAGTTAACAAG-AAAA--AATCAAGCCTGGCT--TTT---TAgtttatgtc
gi|12 : ttaTCATTCTT---TA---ATT-T-T-GTAA--CTCA-TTA-ACAT----T-----------A---T---------T---TT--G-ATTTAAATAT-A-----TT-TCT--------ATGTG----ATTT--T------T--TTTCAATAAA-----TT--CTT-TTTC-----TGTT-GTTTT--TGTTGTTGTTT-TA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCG--CTCCAATATTAAGGTTTCATGAAATAA-TAATAAGTTAATAACAAATTGTATATTTTCATTGG-----TT--ATGTCAG----AT--A------AAATTTATGTATTATAAACTGGTAA-ACAATA-CTGCTTTTTT---ATTTTATCTACTTTGTCATTGATTATGCTTAA----TCAATA-----CAG-AA-G--TG--AGTTGTG-CTTCCA-TA--ATCCCTT---ACCA-TGTT----------ATGTCCC---AT-TTAAA--CCAATTCTTAG--------ATTGAATGGTCAGATTTATAACTAGATTGAATG-T-C-A-CAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|15 : caaaATTGTTTACATCTCTTAA-TA-GCCTATTA-TT-TGACTTCCA-TAATGGTTTAT---AC-----TTAACA--AA--AT----G---GT-TAAAA--T-TATATTTAAATATGATAATTGAATAGCCTAGT-TATAACTGGCTTTGATA-T-T-A-TATTAGCT---TA---GTG-G-TGCA-A-GTAGG---CTTTCAGA-AATGAG----AAGAACAATCTAATGTTGCTTGCTT---GAAAGGTATTTTC-TTTCCCCATGTATAcatcttaacatatggatcaaaat
gi|14 : CCTTTTATACAA-GGCT--TA--AG--------T---GT----------AATATTCCAA-GTAATCATAGAATGATCTGATCTGTAACTTGATGTAAT--T-G-AGCAATTATCAACCA---ATG-A-TAAT-A-GTGAT---T---CTGTTAC-AAGGAGGAAGA--AATCGAGCCTAGCTTGTTT---TAAAGGGATTTTC-CTTCTCCATGTATAACG-CCTATTAT-CCG-GATTGAATTCTCTACATGGGTCAACTAAATTATATT
gi|5 : CAAGCCTGGCTTTTTA-TATCTG--GATAAAATTCTCTAAAGGGATC-------TTATAATTGT---TTATC---ATTTATAAT--G-TTTAGCAGGGTATCTCTTGCTTTCTTGTTATTTATTGTTT---TGTAGTTATTA---TAATCTA---TTGAAGGATTAAGTACAATATTAAAATCACCACATATCA-TG-TAGG----AGTTAT-TTCCCA---TGTCAT---TGATAGTTTTA------------AAAATATT-TTGATAAAAG-C--TAGG--TTCA-TCTTTATT-TGGTCTATATACAGTAACAAGTGTGAAACGTTTTTATTA-A--ACTGT--CATATCTAATG-CTAAA---AAATGTCCATATTAA-----TCATGGATTTCAT---T---ATGTACT---T--------TGCAATCAAAGTTTTTGTTAAATAA--TATAGCA-ACA-CCTCTAGA---ATTTGACTTG----GAAAAACTAAAATA--A-CAA-TTATCATTCCATTGGGCATACA---TA-AATGTCTTC--TGTGACTCAGT-A--------A---AATGTGTGTCTT-GCAAACAATTTATATGGCA-TTTCTTATTCTGTAGGTATTG-AAATACATC-TACT-CTTTT
gi|10 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatAATTAAAC-TTTGAATCAA--GCACAAGATTAAAATCGCCACCTGTCA-TA-TATGTATCA-TTACCT----A---TATCAT---TTATAATCTTAACACATATTTTCAAAAAAT-----AAAAAGG-A--TGAA--A--AG-----ATTTGGGTCCATATACTGTAAGAAGTGTAAAT---TGTTTTGATTCTGCTGT--CA----T---GTC--AAGTGTCATGA--A-ATTACCTTCCTTATAT---TCA----T----TATGCA---CCT------TGCACTCAAAGTTTTTACTGAATAA--TATTGC--AACGCCTCATGC---ATTAGATTTGATA-AAATTA--AAAA-T--AGCAG-TCA-----CCGTTCT--ATTGAGCGTA-AA-------TA---AACTT-GT-T--------T---TGTGA----CTCAGTAAAATGTGTTTATGACATTTTTTATCTTG-TAAAT-ATCGAAAGACGTC-TACT-CTCTTTTG-GTTG--CC---ATTTAGGCCTAGGCAATTCAGGGA--TAGAATtctgttaccatacaggccgcagcagtttagggacaaaagttttatat
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TTTTTTATAAAAGTGTTCATTTTCTTTTAATATATTACATATCGATCATTACGATTGACCCATCTGGTGTTTGCATTTTCAGGCATAACTTTGTTTAGATAATTATGTGATTCTAAAGCACTAAAAGTATTATATTGGTTTTTCGCCATCTGTAGTATTTACTGCCCTAGATTCAATGACCACTCTATTTAATATATGTTTGTATTTCTTTCAATTGACAGTAAATTGTTTCTATTTCTTTTTTTCTGAACTAAGATCATTATCAAAGCTGGAAATGTGTTATTAAAATAATTATTTTTCCATGTTTCTTTTAGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTCATTAAAGGTAAACTGAATTTCACTGTCTGTGATTGTCTCCATGTTATCTTTGTCATAAACTGAAAGAGCATGGTGTTGTTTTACATCTTTATTTCTTTCCTTAATAGTCTCTGAATATGGTAAATCTTTGAATAGAATGTTTTATTTCTACATGGATTT
Unaligned ( gi|13 ): TTTAAATCCGGATAAGATTCGCTAAAGGGATCAAATAACTTTTTATCATTATCAACTCCTGGCAGAGTATTTCTACTTTCTTTGTATCTATTATTTTAAAGTTATAATTCATCTAGGGATTTAACAAAATATAAAAATCAATACATAGCCTGTGTGACTCATTCCATATATCTTTAAGGAATCTGAAAATAAATGTTTTCATTAAAGAAATGGGCATTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGTTTAGTTCAGATGTTATGTATGAAGCTACAAAATGACCATAATCA
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Unaligned ( gi|18 ): AAAAATGAAAAACACAAATCGCTATTCCCTTGGACATATACATGTTTCTCCGGTACCTCAGTCAAATGTGTGTCTTGCAGACAATTATATGACATATTATCTTAAAATACATCTATTGGTTTTCTGTTATCATTAAGGTACAAGCATTTAAGGGATAAAGGTTT
Unaligned ( gi|19 ): GTATTTCCGTCATAGTTAACAGCGCACTAAATCGATAAAATTGTATTTAATGTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACAAGACACCTGTAGCACATTCACTGTGAAAAAAA
Unaligned ( gi|20 ): TTGGTATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATGCTTTTCTAGAGAGTCTTATTCCTGACAGTTATCTGACATAATATTTTTACCGGTCATT
Unaligned ( gi|21 ): CCNNNNNNNNNNAGGAAAACAATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATAA
Alignments
lowQualScore : 3333333333333333 111 7777777777777777 1111111 111111111111 111 1 222222222 11111111 11 222222222222222 11111 3333333333333333 33333333333333333333333333333333333333333333333333333 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111111 111 444444444 111111 11111 111111111111 11111 1 111111111111 11111 22222222 555555555555555555555555555555555555555555 111 1111 1111111111 2222222 333333333333 333333 111 44444444444 222222 333333333333 2222 1111111 111111 3333333333333 111 2222222 1111 33333333 111 11111 1111 11111 1 11 11111 11 222222222222222222222 111 11 2222222 2222
lowQualScore : 0 1 1 1 1 5555555555555555 1 8 99 1 1 1 1 222 1111111111111111 1 1 1111111 1 88 1 666666666666 000 5 5 0 1 333333333 5 77777777 0 888 1 00 666666666666666 888 888 66 1 55 1 1 4 4 11 2 11111 777 44 4 3 4 444 1 1 55 77 3333333333333333 4 55 77777777777777777777777777777777777777777777777777777 44 7 666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 999999 777777777 66 4 4 66 222 0 5 1 1 4 1 1 77 1 1 1 0 5 1 888 222222222 0 5 1 555555 5 88888 1 22 888888888888 3 0 88888 5 0 6666 1 2 4 5 1 1 8 0 2 0 222 5 0 0 5 333333333333 66666 5 0 44 2 8 2 1 2 1 0 11111111 0 7 888 444444444444444444444444444444444444444444 1 000 66 2 0 0 1 1 888 1111 22 1 8888 7777777777 1 1 1 8 6666666 8 3 111111111111 1 888888 222 1 3 99 3 3 99 6 33 33333333333 6 6 1 444444 1 2 777777777777 1 3333 6 99 5555555 44 1 22 1 6 1 1 111111 99 1 2222222222222 1 111 1 3333333 5555 11111111 1 222 1 99 3 6 11111 3333 99 4 55555 55 77 0 1 1 33 1 7 00000 77 5 888888888888888888888 5 0 2 55 5 22 2 2 1 2 222 1 5 66 5 2 22 1111111 88 5555 1 0
lowQualScore : . . . . . ................ . . .. . . . . ... ................ . . ....... . .. . ............ ... . . . . ......... . ........ . ... . .. ............... ... ... .. . .. . . . . .. . ..... ... .. . . . ... . . .. .. ................ . .. ..................................................... .. . ... ............................................................................................................................................................ ...... ......... .. . . .. ... . . . . . . . .. . . . . . . ... ......... . . . ...... . ..... . .. ............ . . ..... . . .... . . . . . . . . . . ... . . . . ............ ..... . . .. . . . . . . . ........ . . ... .......................................... . ... .. . . . . . ... .... .. . .... .......... . . . . ....... . . ............ . ...... ... . . .. . . .. . .. ........... . . . ...... . . ............ . .... . .. ....... .. . .. . . . . ...... .. . ............. . ... . ....... .... ........ . ... . .. . . ..... .... .. . ..... .. .. . . . .. . . ..... .. . ..................... . . . .. . .. . . . . ... . . .. . . .. ....... .. .... . .
lowQualScore : 7 0 0 0 0 2222222222222222 4 0 00 0 0 4 0 444 6666666666666666 0 7 9999999 0 66 0 111111111111 000 0 0 4 1 555555555 0 22222222 8 888 0 99 000000000000000 888 888 99 0 44 0 0 4 4 77 2 11111 888 00 0 0 0 777 0 4 55 22 3333333333333333 0 55 33333333333333333333333333333333333333333333333333333 77 3 444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 999999 888888888 11 4 4 22 888 8 7 0 0 1 9 0 66 0 0 0 4 0 1 888 000000000 8 0 0 000000 0 88888 0 00 444444444444 8 2 66666 0 0 1111 0 8 5 0 0 0 5 2 2 8 888 0 2 5 0 000000000000 00000 0 8 55 2 9 6 9 6 9 2 66666666 4 6 888 111111111111111111111111111111111111111111 0 000 99 8 5 2 0 0 555 3333 00 0 2222 0000000000 0 0 0 0 0000000 8 2 222222222222 8 000000 000 0 7 22 7 7 22 7 22 77777777777 7 7 0 333333 0 2 555555555555 0 7777 7 22 5555555 33 0 00 0 0 7 0 000000 22 0 2222222222222 0 777 0 7777777 2222 88888888 8 888 0 22 7 7 77777 2222 22 2 33333 33 99 3 0 4 33 0 3 77777 33 7 666666666666666666666 6 9 9 88 4 00 2 8 0 4 666 0 0 99 0 3 66 0000000 66 5555 0 7
consensus : CTTTAAGCGTAANTGAAGCCTGTTCAAANGTNATTAATA---CCTTCT-AATGAATTTGATTCTACAGTTGTAAGTTTAGGT--ATTTCATTCGT-AC--GTTCTGAAAATTCTTCATC--T---AAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-GTTTG-GTTTC-TTTT-------AAAATATC---TGTCTGATCT-GT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATAA-----TTA---TGTNAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTT--CACCN-TCTTCAA-T-N-ACTNAGCTGCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-A---TTTTATNTTTNCGTA-T-ANTTATA-AATTCATTTTT-TAA---TT-T-T-C--TA-ATTCG-------TC-G-A---T-----AT----TG---TAAG--GTT---T----T--A-------A--T---TT-----T----NTTTCT-AAT-T---GT-CTATTTT-----------AT---TT-ATTAAN-----T-TC-TTTTT---T--TGTCA-TC-T--TT--CT-TT-TTT-TA-A-AACTTGAATATGANATNGATTTNCCTCTNAN-TTCCATTANTAATGTTTCNAGAAATAGCTGGT-CGT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATT-GT-TCA-ATATTNTCTA--T------G--TTATANACTGGTA-ATA-C-A-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTAC-C---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGTCNGATCTGTAACTAGATTCAATA-T-G-A-CATTTNCT---TA---AT-GATG-ANG-GT----AA---TT--CT---GT---A-ACTAGNAAG---AA--ATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA--TCTTTTTAAATCTGGATNNAATTCTCTAAANGGGTCTATCAGATTATATTTNTC---TATTATTTNTAATA-CTT-------TTTCTCGNGCGTTTTTATTGTTTAT-A-T-TTT-GTAGTT-AT-AGTAATCTAAC-TTNGGGTCTTGA--ACAANATTAAAATCGCC--ACA-TANNAT-ATA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTTTA----------TCAAAANATTATT-AA-AAAAGAT--GGG--G--AGTCTNTATTGGGTCCATATANNGTAACAAGTGTNAATCTGTTNTTATT-NA-CTGT--TANATCC---GC--AA---TNATG---AAATTACCCTCACGG---TCANA--TATGTG--CA---TGTACCTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCCTCGGGNAT--TTGACTTGACC-GAACNA--AAAANA-CAA-TCACTNCCCCATTGNGTACGNATAAA-NTTT-TC-NTGTANCT--CAGT-NA---AATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGNGATAAAAT
Reference ( family-211 ) : CTCTNAGCGTAANTGAAGNCTGNTCAAA-GTAAT-AA-A---CCTTCT-AATGAATTTGATTCTNCAGTTGTAAGTTNAGGT--ATCTCATCC---AC--ATTCNGAAAATTCTTCATT--T---AAATTNATATCTATTNGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-ATTTG-GTTTC-TTTN-------AAAATATC---TGNCTGATTN-GT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATAA-----TTA---TGTTNT-TCTAAGTTAC-AAAA-ATANTTTGAAGGTTTTT--CACCC-TCTTCAA-T-N-ACTGAGCTGCTCTT-GATCT--TAC--NA--TA--G-CC-TT---C-A---TTTTANGTTTNCGTA-T-ANTTANA-AATTCATTTTT-TAA---TT-T-T-C--TA-ATTCG-------TC-G-A---T-----AT----TG---TAAG--GTT---T----T--A-------A--T---TT-----T----TTTTCTTAAT-T---GT-CTATTTT-----------AT---TT-ATNAAN-----T-TT-TTTTT---T--TGTCAATC-T--TT--TT-TT-TTT-TA-A-AACTTGCATATGANATNGATTTTCCTCTNAA-TTCCATNANTAATGTTTCNAGAAATAGCTGGT-CGT---TAA---T-A-CGAATTGT-ATTTTNTCATTTG-GAATATT-GT-TCA-ATATTNTNNA--T------G--TTATATACTGGTA-A-A-C-A-TATTGCTTTTTNATTTCNTCTATTT-TNTCATTNATTATGTTTAAATAGTCTATATCACTTAGAAGAGNGTTATTGTG-CTTCCATAGTCCCTTAC-C---AGGTT--CAAAAT----CGT-TAAAANAAATATTTAAA-ATNATCATTGAATGGTCNGATCTGTAACTAGATTCAATA-T-G-A-CATTTNCT---TA---AT-GANG-ANG-GT----AA---TT--CN---G----A-ACTAANAAG---AA--ATCNAGTCTTGCTTGTTTTAAAGGTNTTTTNCTTCTCCATGTATA--TCTTTTTAANNTTGGATNNAATTCTCTAAANGGGTCTATCAGATTATANTTNTC---TNTTATTTNTAANA-CTT-------TTTCCCANGCGTTCTTATTGTTTAT-A-T-TNT-GTAATT-A--AGTAATCTAAC-TTNGAGTCTTGA--ACAAGATTAAAATCGCC--ACA-TATNAT-ATA-G---T-TCA-TTAC-TATNTCAC---TTCTGNTCTTA----------TCAAAANATTATT-AA-AAAAGAT--GGG--G--AGTCNNTATTNGGTCCATATANNGTAACAAGTGTNAATCTGTTNTTATT-TA-CTGT--TANATCC---GC--AA---TNATG---AAATTACCCTCACGG---TCAGA--TATGTG--CA---TGTATCGTATANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCCTCGGGNAT--TTGACTTGACC-GAANAA--AAAANA-CAG-TCATTNCCCCATTGTGTACGGATAAA-ATTT-TC-ATGTAACT--T-GT-TA---AATGAGTGTCTTGTAAACAATATATATGACACTTTTTNNCTTTTAGATANTNAAATACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCTCGGCAATTAACGGNGATAGAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAGTAATTAA-A---CCATCT-AGTGAATTTGACTCTATTGATGTAAGTTTATGA--ATTTCATTTGTTAC--GTTTAAAAAAAACGTTATT--T---AAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-ATTTGAGCTTC-TTTA-------AGAATATC---TGTTTGATTA-GT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATAA-----TTA---TGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTT--CATCC-TCTTCAA-T-A-ATTTAGTTGCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-A---TCTTAAGTTTTCGGA-T-ATTTATA-AGTTCATTTTTGTAA---TT-T-T-C--TA-ATTGG-------TC-G-A---T-----AT----TG---TAAG--GTT---T----T--A-------G--T---TT-----T----TTTTCTTAAT-T---GT-CTATTTT-----------AT---TT-ATCAAA-----T-CT-TTTTTAACT--TGTCAGTC-T--CT--CT-CT-TTT-TA-A-AACTTGAATAAGATATTGACTTGCCTCTGAT-TTCCATTAGTAAGGTTTCAAGAAATAGCTGAT-CGTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TT-GT-TCA-ATATTATAAA--A------G--TTATATATGGGTA-ATG-C-A-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTAC-C---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGTCGGATCTGTAACTAGATTCAATA-T-G-A-CATTTATT---TA---AT-GAAG-AGG-GT----AATTTTT--CT---G----ACACTAACAAA---AA--ATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA--GCGTTTTAATGTTCGATAACATTCTCTAAATGGGTCAATCAAGTTATATTTTTC---TTTTATTTCTAAAA-CTT-------TTTGTTGTGCTTTTTTATTGTTTGT-A-T-CAGAGTAATT-GC-AGTAATCTAAT-TTCGGGTCTTGT--ACAATGTTGAAATCTCC--GCA-TAAGAC-ATACGT--T-TCA-TTAT-TATAT-AC---TTCTGCTTTTA----------TCAAAAGATTATCGAA-GAAAAAT--GGG--G--AGTCTTTATTGGGTCCATATAAGGTTATAAGAGTAAATCTATTATTATC-TA-CAGT--TAAATCT---GC--AA---TTATG---TAATTACCCTCAGGG---TCAGAGGTATGTG--CA---TGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACA-GCCACGACTAT--TTGAGCTGACC-GAGGAG--AAAAGA-CAT-TTATTACCCCATTCTGAATTAATAAA-ATTT-TCTATATAAGT--T-GT-TA---AATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAAC-TTTGAATCAAGC--ACAAGATTAAAATCGCC--ACC-TGTCAT-ATATG---TATCA-TTACCTATATCAT---TTATAATCTTAACACATATTTTCAAAAAAT-----AA-AAAGGAT--GAA--A--AG---AT-TTGGGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGATTCTG-CTGT--CATGTC--------AAGTGTCATG---AAATTACCTTC-C-----TTATA--TTCAT---TA---TGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG--CCTCATGCAT--TAGATTTGATA-AAATTA--AAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAA-CTTG-TT-TTGTGACT--CAGT-AA---AAT--GTGTT--------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TCATT--TTCAAGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-GGATTTT-GTTTTATTTT-------AAATTATC---TGATTGATT--GTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAAA-----TTA---TTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTT--CACCT-TCTTCAA-C-CCACTTAGCT----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGA---TTTTGTCATTACGTAAC-ACTTTCA-AAT-CATTCTT-TAA---TT-T-TGT--TA-ATTCA-------TT-A-ACCTT-----AT----TT---T--G--GTT---T----A--A-------A--cttgatattaatg
gi|12 : gacatttaatacaatgtttttgatgcctcagcacatgtaatttttccttctatactgttggattcgtcttgcgataattttggcacgtcagtattttttataA-AAT-CATTCTT-TAA---TT-T-T-G--TA-ACTCA-------TT-A-A---C-----AT----TA---T-------T---T----T--G-------A--T---TTAAATAT----ATTTCT--ATGT---G----ATTTT-----------TT---TTCAATAAA-----T-TC-TTTTT---C--TGTTGTTT-T--TG--TTGTTGTTT-TA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCG-CTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---TAA-CAAATTGT-ATATTTTCA-TTG-G----TT-ATGTCAGATAAAATTTA--T------GTATTATAAACTGGTA-A-A-CAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTAC-C---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGTCAGATTTATAACTAGATTGAATG-T-C-A-CACAT-CT---TA---Agatatttct
gi|14 : cAATATTCCAA-GTAATCATAGAATGATCTGATCTGTAACTTGATGTAAT--T-G-AGCAATTATCAACCA---AT-GATA-ATA-GT----GA---TT--CT---GTTACA-AGGAGGAAG---AA--ATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATTA--TCCGGATTGAATTCTCTACATGGGTCAACTAAATTATATTcatatggatcaaaat
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTATAC------TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGCCTAGT-TATAACTGGCTTTGATA-T-T-A-TATTAGCT---TA---GT-GGTG-CAA-GT----AGGCTTT--CA---G----A-AATGAGAAG---AACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA--
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATCAGGCATTTC---TGTTATGTTTAAGTTGC-AAAACATACTTTGAA-GTTTTT--TATTCATCATCAA-TAA-AATGAGC-G--CGT-GATCG--TATGAAA--TC--A-CCGTT---C-A---TTTTCTTTTTGCGTA-A-AGCTATG-AG-TGATTCTT-TAA---AT-T-T-------ATTC-------------A---C-----AT----TG---T
gi|18 : ttttagcttgttttgatatattcacttgAATGA--AAAACA-CAAATCGCTATTCCCTTG-G-ACATATACATGTTTCTC-CGGTACCT--CAGT-CA---AATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTAA--GGGATAAAtt
gi|2 : aaaCTCTTAGCGTTACTGCAGACTCTTCAA--TTGAT-AA-AATACCTTCT-ATAGAGTTTGATCCAACCGTTGTAAGTTTTGGTGTATTTAATCCT--ACTTATT------ATTTTTC-----T---AAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-TCTTT-GATTC-TGTT-------AAAATTTG---GAATTGATCT-TT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-AA-----TTA---TGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTT--CCCCA-TCTTCTA-T-G-ATTT--CAGCTCGC-CATCT--TAC--TAAATG--A-CC-CTG--C-A---TTTTGTCTTTTCTTAAC-ATTTG---AAGTCAATGTT-TAAGTATT-T-C-CATTG-ACTGGATTTTTTTCAG-A---TGAGAGAT----TG---T-----GTT---CGAG-T--A-------A--T---TC-----A----ATTTATTAAT-T-----------TT-----------AT---TA-ATTA---------TT-TTTCT---C--TATTA-TC-T--TT--TT-TT-TTTGTA-A---CTTGAATATGATATAAATTTCCCTCTCAA-TTCCATGAGCAATGTTTCTAGGAATAACTGGT-CAT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATC-AT-TT--ATGTTTTCTG--T------G--TTATATACTGACA-CTG-C-A-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTAC-C---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGTCAGGTCTGTAGCTAGATTCAATAGT-G---CAATTACT---TATAGATGGGAG-AAGTGT----AA-------CA---G----ATACTAGAAAA---AA--ATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA--TCTTTTCAGTTCTGGATGTAGTTCTCGAAAATGATCTATCGGGTTATTTTGAAC---CATTATTTCTAATA-CTC-------TTTCTCAAGCGTTCTTATTGTTTAC-A-TGTTT-ATAGTTGA--AGTAATCAAGCGTTCGA-TCTAAA--ACTAAATTAAAATCTCC--ACA-CATGACAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTTAA----------GTACAAGATTACTAAA-AAAAGAC--GGT--G--AATCATTATTGGGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTATT-TA-CAGT--TAAATCT---GC--AA---TGATA---AAATTACCCTCACTA---TCCGA--AATGTG---ACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AAC--CCCTCGGG-ATGGGGGAC--AACCAGAACAA--AACAAA-CAA-TCATTTCCCCATTGCGTACGAATAAA-CTGT-TC-A-GTAGTT--T-GTGTAG--AATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAACggttt
gi|20 : tgTCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gtgacaatatctatatatctgtcat
gi|21 : ttggtataatggcaaA--ATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA--agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnaggaaaacAGTGAAATTTGTTCATATGTCAA-AATA---CCTTCT-AACC--TCTGATTCTTCAGTTGTAAGTTAAAGT--ATCTCA------A---ATTCTGAAAATTCTTCATC--T---AAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-GTT---GTTTT-TTTTTGTGTGTAAAATTTC---TGCCTGATCT-GT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTAG-----TTA---TACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGTTTTTTTCCATCC-TCTATAA-----ACTGAGCTA---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-A---TCTTATGTTTGCGTA-TTAATGATA-AAT-CATGTTT-TAG---TTGT-T-C-----AT--G-------TC-G-A---T-----GT----T----TATG--CTC---TGGGAT--A-------AGGT---TA-----T----GTTCCTT--T-T---TT-TTATTTC-----------AC---AT-AT-AAT-----T-TCATTTTC---T--TG-CAATT-CAATT--TT-TT-TTG-TA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAA-TTCCATAAACAATGTTTCTAAAAATAGCTGAT-CGT---TAA---C--------TGTTAATTTGTTATTTG-GATTATT-GT--CT-ATATTTTCAG--T------A--TTATAGACTGGTA-A-AGC-G-TATT------TAATTTCCTTTATTT-TATTATTTATTGT---CAAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTAC-CTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGTCTGACCTGTAACTAGCGTCAAC--T-GTA-CATTTTTC---TA---CT-GATGCAAG-AA----GA---TTTTCT---GT---A-ACTAAAAAG---AA-------GTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA--TCTTTTTAAATCTGGATACAATTTTCTAAAGGGGTCTATAAGATTATAGGATGA---TTTTATCTAAAGTA-TCT-------TTTCCCAGGAGTTTTTATAGTT------------GTACTT-A-------TCTAAT-TTGGGGTCCTGA--ACCAAGTTAAAATCGCCTAATAATACCAT-AT---------CA-TTAC-T-TTTTACAGTTTCTGCTGTCA----------TCATAATCCTAT--AA-AAAAAATCTGGA--G--AGTCAGTATTTGGCCGATATAAAG-AATGGGAGTTAATCTCTTATTCTA-AA-CTGT--TATATCA---AC--TG---TTATT---CAATTCCCCTCTGGG---TCAGA--TATATAATTA---TGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA-C--TCGGGCAT--TTGATTTTCCA-GAACTA--AATAAA-TA--TCATTTCCCAATTCTGTGCGGATGCG-ATTT-TC-A-GTA-TT--T-GG-TATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacTTT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTT--CCCCA-TTTTCAA-T-CCACTGAGCT---CGT-GATCT--TGT--AA--TACAG-CC-TT---TTA---ATTTATCTTTCC-TA-T-ACATATCTAATTCAACCTT-TAA---TG-TGT-C--TA-GTTCT-------TC-T-A---T-----AT----TT---TGAT--CAT---T----T--A-------A--T---GA-----A----TTTTCA-AAT-T---CTTCTATTTT------------T---TT-ATGAATAACAAT-TT-CCCTT---T--TGTC--TT-T--TT--CT-TT-TTT-TATATAACTACTATATGATATAGTTTTGCCTCTGAT-TTCCATTAATAATGTCTCTAGAAAGAGTTGGT-CAT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATT-AC--CA-ATATTGTCTA--T------A--TTATATATTGGTA-C-A-C-AGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCC-C---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGATCGGATTTGTAACTGGGTTCAATA-A-A-A-CATTTCCT---GAC--GT-G-TG-ATA-AT----AA---AT--CGCCTGT---C-ACTAGAAAG---AA--GTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA--TCTTTTTAAATTGGGATTATTTTCTCTGAATGGGTCTAACA-ATTGT--TTATCATTTATAATTTGTAAAAGCAT-------ATTTCTA-GCATTTTTATTGTTCAT-ATT-TTT-ATAATT-AT-AATAGTCTAAA-ACAGGATCTTGA--ACAAGATTAAAATCACT--ACA-CCAAATAAAA-G---TGTCATTTCC-TATTTT-C---TCCATCTCTTG----------T-AAAACATTCTT-AT-AAAACAT--AGGTTG--A-TCTGTATTAGGTCCGTATATTGTAGCAAGTGTTAA-CCGTTTTGATT-CA-A-GTAATAAATCC---AG--AG---CTAAA---AAATTACCATCCCTG---TCTTT--CATCT---CA---TGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACACCCCTC--AAAT--TTAACCTTGCT-GAACTA--AAGTAA-CAG-TTACTGTTCGATTGTGTATATATAAA-TTTT-TG-TTGT-TCTTCT-GT-AA---AATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : TTTCTAAAT-T---AT-TTATTTT------------T---TC-AATAAG-----T-TC-TTTTT---C--TGT-------------TT-TT-TTT-TA-T-AACTTGCATATGAAATTGATTTTCCTCGTAA-CTCCATCATTAAGATTTCAAGAAATAACTGGT-CAT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAGT-TAA-ATTTTCTGTA--T------A----ATAAACAGGTA-A-A-C-AATACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTAC-C---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGTCAGATATATAACTAGATTGAATG-TCGCA-CAT---CT---TA---AT--AT--ATG-GTAAAAAA---TC--AT---A----A-GTTAACAAGAAAAA--ATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaaCTTTTTATATCTGGATAAAATTCTCTAAAGGGATCT-------TATAATTGTT---TATCATTTATAATG-TTTAGCAGGGTATCTCTTGCTTTCTTGTTATTTATTG-T-TTT-GTAGTT-ATTA-TAATCTA---TTGAAGGATTAAGTACAATATTAAAATCACC--ACA-TATCAT-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTTTA------------AAAATATT-TT-GATAAAAGCT--AGG--TTCA-TCTTTATTTGGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTATT-AAACTGT--CATATCTAATGCTAAA---AAATGTCCATATTAA--TCATGGATTTCAT---TATGTA--CT---T------TGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CC-TCTAGAAT--TTGACTTG----GAAAAACTAAAATAACAA-TTATCATTCCATTGGGCATACATAAATGTCT-TC--TGTGACT--CAGT-AA---AATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTTTA--GGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAGTAATTAA-A---CCATCTTAAT-AATTTGACTCTACAGATGTAAGTAAAGGA--ATTTCATTTGTAAC--GTTT--AAAATT--TCATTATT---AAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-AATGA-GCTTC-TTTA-------AGAATACC---TCTTTGATTG-GT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATAT-----TTAATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGT--CATCC-TCTTCAA-T-A-A--AAGTTGCCCTT-GATTC--TAA--CA--TA-------TT---C-A--------------------------AA-AGCTCATTTTTGCAA---TT-T-T-C--TC-ATTGG-------CC-G-A---G-----AT----AG---TCAG--GTT---T----T--G-------A--T---TT-----T----ATTTCT-AGC-T---GT-----TCT-----------AT---TA-ATCAAA-----TATC-TTCCT---TACTGTCAATG-T--CT--CT-TT-TC---A-A-AATTTTCATAAGATATTGACTTGCCTCTGGT-TTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TT-GT-TTA-ATATTATTGAAGTTATAAAG--TTATATACGGGTA-ATA-T-A-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTAC-C---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT-----GATCTGTAACTAGAgttttatat
gi|7 : TTTTTTATAAAA-GTGTTCA-TTTTC-TTTT-------AATATATTACATATC-GATCA-TT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATAA-----TTA---TGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTT--CGCCA-TCTGTAG-T---ATTTA-CTGCCCTA-GATT-----C--AA--TG--A-C-------C-A---CTCTAT-TTAATATA-T-GTTTGT---ATT--TCTTT-CAA---TT--------------------------G-A---C-----A------G---TAAATTGTT---T----C--T-------A--TTTCTT-----T----TTTTCTGAAC-TAAGAT-C-ATTATCAAAGCTGGAAATGTGTT-ATTAAA-----A-TA-ATTAT---T--TTTCCATG-T--TT--CT-TT-T--------AGCTTGAAAATTAAATAGA-TTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGT-CAT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATT-GTCTCC-ATGTTATCTT--T------G--TCATAAACTGAAAGA-G-C-A-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATGTCAA-AATA---CCTTCT-AATAAATTTGATTCTTCAGTTGTAAGTTTAGGT--ATCTCA------A---ATTCTGAAAATTCTTCATC--T---AAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-GTTTG-GTTTC-TTGT-------AAAATTTC---TGCCTGATCT-GT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAAA-----TTA---TACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTT--CTCCG-TCTTCTA-TAC-ACTGA---GCTCTT-GATCTAATAA--GG--TA--G-CCATT---C-A---TCTTATGTTTACGTACT-AATGAT--AACTCATGTTT-TAG---TT-G-T-T--CA-AGTCG-------TT-GTG---T-----ATGCTCTGGGATAAG--GTTATGT----TCCA-------A--T---TT-----T----TT-----------------TATTTC-----------AC---AT-AT-AAT-----T-TCATTTTC---T--TGTGATTCAT--TTAATT-TT-TTT-TA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gatAATTCTTTTTC--C---AGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACACATG-GTTTC-TTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT-C-ATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATAG-----TTA---TTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTT--CACCT-TCTTCAACC-C-ATT---TTGCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTA---TTCCGTA-G-AATATTC-AATTAATTTTT-TAA---AA-T-G-T--TAGATTCC-------TC-T-A---T-----AT----TT---T------CT---T----T--ATTTAGTGA--T---TT-----TTCAATTTTATCAAT-T---GT-TT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAATCCGGATAAGATTCGCTAAAGGGATCAAATAACTTTTTATCATTATCAACTCCTGGCAGAGTATTTCTACTTTCTTTGTATCTATTATTTTAAAGTTATAATTCATCTAGGGATTTAACAAAATATAAAAATCAATACATAGCCTGTGTGACTCATTCCATATATCTTTAAGGAATCTGAAAATAAATGTTTTCATTAAAGAAATGGGCATTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGTTTAGTTCAGATGTTATGTATGAAGCTACAAAATGACCATAATCA
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Unaligned ( gi|19 ): GTATTTCCGTCATAGTTAACAGCGCACTAAATCGATAAAATTGTATTTAATGTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACAAGACACCTGTAGCACATTCACTGTGAAAAAAA
Alignments
lowQualScore : 11 2222222 111 111 555555555555555 1111111111111111111 111 1 222222 1111111 222222222222222 111111111 22222222222222222222 33333333333333333333333 11111111111 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222222222222222222222 222222222222222 111 444444444 111111 11 11111 11 1 11111 22222222 444444444444444444444444444444444444 111 1111 1111 33333333333 222 222222222222 44444444444444444444444444444444444444444444444444444444444444444444 2222222222222 222222222 111 1111111 2222222222222 1111 444444444444444444444444444 222 1111 11 111 11 111 11 2222222 222222
lowQualScore : 1 1 3 1 6 1 99 7 6 3333333 4 7 111 3 111 777777777777777 77 3 1 7777777777777777777 000 5 5 0 1 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 7 1 55555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888888888888888888888888 99999 8 4 999999 333333333333333 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 222222222 0 5 555555 33 5 1 22222 888 66 1 0 33 5 0 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 2 1 0 11111111 0 7 888 66 0 5 1 444444444444444444444444444444444444 5 2 5 66 2 0 0 1 000 0 0 222 1 1 1 0 7 5 3333 22 9 4444 1 99 3 00000000000 000 5 3 111111111111 2 1 5 444 1 1 77 1 5 5 4 55555555555555555555555555555555555555555555555555555555555555555555 1 8888888888888 5 5 77 111111111 000 22 1 888 3 5 3333333 77 1 8888888888888 1 0000 1 999999999999999999999999999 2 1 99 3 6 777 3333 99 4 1 11 1 0 1 5 5 1 1 1 555 1 555 66 11 77 1 1 1 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . . .. . . ....... . . ... . ... ............... .. . . ................... ... . . . . ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . .................... . .. ....................... . . . . . ........... .. . ... ... ......................................................................................................... ........................ ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . . ..... ... .. . . .. . . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . . . . ........ . . ... .. . . . .................................... . . . .. . . . . ... . . ... . . . . . . .... .. . .... . .. . ........... ... . . ............ . . . ... . . .. . . . . .................................................................... . ............. . . .. ......... ... .. . ... . . ....... .. . ............. . .... . ........................... . . .. . . ... .... .. . . .. . . . . . . . . ... . ... .. .. .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 8 7 0 7 0 22 3 7 0000000 0 5 777 5 333 222222222222222 99 0 0 0000000000000000000 000 0 0 4 1 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 0 0 7 0 777 0 4 4 0 00000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 777777777777777777777777 77777 9 4 999999 444444444444444 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 000000000 8 0 000000 22 0 0 55555 888 99 0 2 66 0 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 4 9 2 66666666 4 6 888 00 1 7 0 111111111111111111111111111111111111 9 2 0 99 8 5 2 0 000 1 3 333 0 7 9 3 6 7 9999 55 8 2222 0 22 7 22222222222 555 2 2 333333333333 2 7 4 444 0 7 99 0 7 7 0 11111111111111111111111111111111111111111111111111111111111111111111 0 3333333333333 7 3 99 111111111 000 00 0 000 0 7 9999999 99 0 7777777777777 0 4444 0 333333333333333333333333333 2 0 22 7 7 555 2222 22 2 0 88 0 3 0 7 7 0 0 1 111 0 111 33 77 99 0 0 7 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 666666
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-TAATTAATACCTTCT-A-A-TGAATTTGATTCTNCAGTTG---TAAGTTTAGGN--ATTTCATTCGT-A-CGTTCTGAAAAT--TCTTCATCTAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CTATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATATTNT-----CTGT---GT--TATANACTGGTAACGC-A-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGTCGGATCTGTAACTAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT--C---TG---T---AAC------TAGAAAGA-A--ATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAAATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-CTT-------TTTCTC-NGCNTTCTTATTGTTTA-T-AT-T-TT-ATAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCACATA--NNA-C-GT---A-G-T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--GAGTCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TT-C-A-CTGT--TANATC---CGC--AG---TTATG---AAATTACCCTCACGG---TCANA--TATGTG--TA---TGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA--CCTCGGGNAT--TTGACTTGACC-GAACTAAAAAAA-CAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGTTCAAANG-TNATTAATACCTTCT-A-A-TGAATTTGATTCTACAGTTG---TAAGTTTAGGT--ATTTCATTCGT-A-CGTTCTGAAAAT--TCTTCATCTAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTNAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCACCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTG---T-CTATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TC--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATATTNT-----CTAT---GT--TATANACTGGTAATAC-A-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGTCNGATCTGTAACTAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT--C---TG---T---AAC------TAGNAAGA-A--ATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAAATCTGGATNNAATTCTCTAAANGGGTCTATCAGATTA-TAT--TTNTCTATTAT----TTNTA--ATA-CTT-------TTTCTCGNGCGTTTTTATTGTTTA-T-AT-T-TT-GTAGTTATAGTAATCTAACTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCACATA--NNA-T-AT---A-G-T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--GAGTCTNTATTG---GGTCCATATANNGTAACAAGTGTNAATCTGTTNTTA-TT-N-A-CTGT--TANATC---CGC--AA---TNATG---AAATTACCCTCACGG---TCANA--TATGTG--CA---TGTACCTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCCTCGGGNAT--TTGACTTGACC-GAACNAAAAANA-CAA-TCACTNCCCCATTGNGTACGNATAAANTTTTC-NTGTANCTCA-G--TNAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGNGATAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-TAATTAA-ACCATCT-A-G-TGAATTTGACTCTATTGATG---TAAGTTTATGA--ATTTCATTTGTTA-CGTTTAAAAAAA--ACGTTATTTAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-TTT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CTATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATATTAT-----AAAA---GT--TATATATGGGTAATGC-A-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGTCGGATCTGTAACTAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTT--C---TG---A---CAC------TAACAAAA-A--ATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTCGATAACATTCTCTAAATGGGTCAATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--AAA-CTT-------TTTGTTGTGCTTTTTTATTGTTTG-T-AT-CAGA-GTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGCATA--AGA-C-AT---ACGTT-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--GAGTCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TC-T-A-CAGT--TAAATC---TGC--AA---TTATG---TAATTACCCTCAGGG---TCAGAGGTATGTG--CA---TGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACA-GCCACGACTAT--TTGAGCTGACC-GAGGAGAAAAGA-CAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTT--G--TTAAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCACCTG--TCA-T-AT---ATG-TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--AAG---AT-TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TT-CTG-CTGT--CATGTC--------AAGTGTCATG---AAATTACCTTC-C-----TTATA--TTCAT---TA---TGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG--CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-TAATTTTT-CCTTCT-ATACTG--TTGGATTCGTC--TTGCGATAATTTT-GGC--ACGTCA---GT-A-TTTTTT--ATATCATTTTCA---AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-CTT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G-ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAAT-----TTAT---GTATTATAAACTGGTAA-ACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGTCAGATTTATAACTAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAAATCCGGATAAGATTCGCTAAAGGG----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCAGA-GTA-------TTTCT---ACTTTCTTTGTATCTATT-AT-T-TT-AAAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATACATAGCCTG-T-GT---G-A-C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--CA----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTT-C-AGATGT--TATGTA---TGA--AG---CTACA---AAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGATCTGATCTGTAACTTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TT--C---TG---TTACAAG------GAGGAAGA-A--ATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT---ATCCGGATTGAATTCTCTACATGGGTCAACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGCCTAGT-TATAACTGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTT--C---AG---A---AAT------GAG-AAGA-ACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-TAA-A-ATG-AGC--G--CGT-GATCG--TATGAAA--TC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAATGAAAAACA-CAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGATAA--AATACCTTCT-A-T-AGAGTTTGATCCAACCGTTG---TAAGTTTTGGTGTATTTAATCC-T-A-C-TT------AT--TATTTTTCTAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-TTTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA-------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGTTTT-----CTGT---GT--TATATACTGACACTGC-A-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGTCAGGTCTGTAGCTAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---T--------G---T---AACAGATACTAGAAAAA-A--ATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAGTTCTGGATGTAGTTCTCGAAAATGATCTATCGGGTTA-TTT--TGAACCATTAT----TTCTA--ATA-CTC-------TTTCTCAAGCGTTCTTATTGTTTA-C-ATGT-TT-ATAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCACACA--TGA-CAAT---A-G----CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--GAATCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TT-T-A-CAGT--TAAATC---TGC--AA---TGATA---AAATTACCCTCACTA---TCCGA--AATGTG---ACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AAC--CCCTCGGG-ATGGGGGAC--AACCAGAACAAAACAAA-CAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATgcggattcctggtgacagtactttatagatgcaacaagacacctgtagcacattcactgtgaaaaaaa
gi|20 : tgTCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : ttggtataatggcaaAGGAAAACA--ATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnAGTGAAATTTGTTCATATG-TCAA-AATACCTTCT-A-A-CC--TCTGATTCTTCAGTTG---TAAGTTAAAGT--ATCTCA------A--ATTCTGAAAAT--TCTTCATCTAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGTTTTTTT-CCATCCTCTA-T-A-AACTG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TTATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA---C--------TGTTAATTTGTTATTTG-GATTATTGT--CT-ATATTTT-----CAGT---AT--TATAGACTGGTAAAGC-G-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGTCTGACCTGTAACTAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GA---TTTTC---TG---T---AAC------TAAAAAGA-A-------GTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAAATCTGGATACAATTTTCTAAAGGGGTCTATAAGATTA-TAGGATGATT--TTAT----CTAAA--GTA-TCT-------TTTCCCAGGAGTTTTTA-------------------TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTAATA--ATACC-AT---A-----TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--GAGTCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATCTCTTATTC-TA-A-A-CTGT--TATATC---AAC--TG---TTATT---CAATTCCCCTCTGGG---TCAGA--TATATAATTA---TGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA---CTCGGGCAT--TTGATTTTCCA-GAACTAAATAAA-T-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-CTG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCTATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATATTGT-----CTAT---AT--TATATATTGGTA-CAC-AGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGATCGGATTTGTAACTGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---AT--CGCCTG---T---CAC------TAGAAAGA-A--GTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAAATTGGGATTATTTTCTCTGAATGGGTCTAACA-ATTG-TTTA-TCATTTATAAT----TTGTA--AAAGCATA------TTTCT--AGCATTTTTATTGTTCA-T-AT-T-TTTATAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACC--AAA-TAAA---A-G-TGTCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTGA-TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAA-CCGTTTTGA-TT-C-A-A-GTAATAAATC---CAG--AG---CTAAA---AAATTACCATCCCTG---TCTTT--CATCT---CA---TGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACACCCCTC--AAAT--TTAACCTTGCT-GAACTAAAGTAA-CAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TTATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-ATTTT-----CTGT---AT--AATAAACAGGTAA-AC-AATACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGTCAGATATATAACTAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TC--A---TAAGTT---AAC------AAGAAA-A-A--ATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTATATCTGGATAAAATTCTCTAAAGGGATCT-------TA-TAA--TTGTTTATCAT----TTATA--ATG-TTTAGCAGGGTATCTCTTGCTTTCTTGTTATTTA-TTGT-T-TT-GTAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCACATA--TCA-T-GTAGGA-G-T-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGGT-TCATCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTAA-A-CTGT--CATATCTAATGCTAAA---AAATGTCCATATTA--ATCATGGATTTCAT-----------TA---TGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA--CCTCTAGAAT--TTGACTTGGAA-AAACTAAAATAA-CAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-TAATTAA-ACCATCTTA-A-T-AATTTGACTCTACAGATG---TAAGTAAAGGA--ATTTCATTTGT-AACGTT-TAAAATT--TCATTAT-TAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A---A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CTGTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATATTATTGAAGTTATAAAGT--TATATACGGGTAATAT-A-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT-----GATCTGTAACTAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-TTT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C-ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGTTAT-----CTTT---GT--CATAAACTGAAAGAGC-A-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA-AATACCTTCT-A-A-TAAATTTGATTCTTCAGTTG---TAAGTTTAGGT--ATCTCA------A--ATTCTGAAAAT--TCTTCATCTAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-CTG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TTATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gatAAT--TCTTTTTCCAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-TTT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATTTTCTTTATTTAGTGAT--TTTT----CAATTT-----TAT---------C-AA-TTG---T-TT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 777777777777777777 1111111111111111111 111 1 222222 1111111 222222222222222 111111111 22222222222222222222 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111 222222222222222 111 444444444 111111 11 11111 111 11111 111111111 11111111 5555555555555555555555555555555 111 11 1111 33333333333 2222 1 55555555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 2222222 1111 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 888 2 333333333333333333 77 3 1 7777777777777777777 000 5 5 0 1 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 1 55555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888888888 4 0000 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 222222222 0 5 555555 33 5 66 1 22222 888 1 0 000 5 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 5555555555555555555555555555555 1 4 5 2 0 0 1 000 0 66 0 111 1 1 1 0 5 5 1 33 1 9 4444 1 99 1 00000000000 6 7777 1 1 1 3 6 666 1 5 222 1 1 77 1 5 5 4 33333333333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 2222222 77 1 1111 33 1 2222222222222222222222222222222 0 1 99 3 6 6 9999 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . ... . .................. .. . . ................... ... . . . . ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . . .................... . .. ....................... . . . . . ........... .. . ... ... ........................................................................................................... ................ . .... ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . ............................... . . . . . . . ... . .. . ... . . . . . . . .. . . .... . .. . ........... . .... . . . . . ... . . ... . . .. . . . . .......................................................................... . ............. . . .. ............ ... .. . . . . . ....... .. . .... .. . ............................... . . .. . . . .... .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 999 4 333333333333333333 99 0 0 0000000000000000000 000 0 0 4 1 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 6 0 0 00000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333 0 7777 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 000000000 8 0 000000 22 0 99 0 55555 888 0 2 888 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 7777777777777777777777777777777 6 2 0 8 5 2 0 000 1 00 4 111 0 7 9 3 7 7 0 66 5 8 2222 0 22 0 22222222222 7 5555 0 8 7 3 7 888 7 4 999 0 7 99 0 7 7 0 77777777777777777777777777777777777777777777777777777777777777777777777777 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 9999999 99 0 9999 33 4 2222222222222222222222222222222 3 0 22 7 7 7 0000 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGT-A-CGTTTTGAAAAT--TCTTCATCTAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TTC---TG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-CTT-------TTT-CTC-A-GCNTTCTTATTGTTTAT-AT-TTT-A-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCACA-----TA--NNA-C-GTA-G---T-TCATT-AC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATTTCA--TTCGT-A-CGTTCTGAAAAT--TCTTCATCTAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAACGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TTC---TG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-CTT-------TTT-CTC-N-GCNTTCTTATTGTTTAT-AT-TTT-A-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCACA-----TA--NNA-C-GTA-G---T-TCATT-AC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGCAGTTATGAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGGGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGA--ATTTCA--TTTGTTA-CGTTTAAAAAAA--ACGTTATTTAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-TTT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTTC---TG---A---C------ACTAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCAATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--AAA-CTT-------TTTGTTG-T-GCTTTTTTATTGTTTGT-AT-CAG-AGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGCA-----TA--AGA-C-ATACGT--T-TCATT-AT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TCT---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCACC-----TG--TCA-T-ATATG---TATCATT-ACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TTCT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGC--ACGTCA-----GT-A-TTTTTT--ATATCATTTTCA---AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-CTT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCAGA-GTA-------TTT-CT----ACTTTCTTTGTATCTATTAT-TTT-A-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATACA-----TAGCCTG-T-GTG-A---C-TCATT-CCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTTC---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TTC---TG---TTACA------AGGAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCAACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTTC---AG---A---A------ATGAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-TAA-A-ATG-AGC--G--CGT-GATCG--TATGAAA--TC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGTATTTAA--TCC-T-A-C-TT------AT--TATTTTTCTAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-TTTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---------TG---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCTATCGGGTTA-TTT--TGAACCATTAT----TTCTA--ATA-CTC-------TTT-CTCAA-GCGTTCTTATTGTTTAC-ATGTTT-A-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCACA-----CA--TGA-CAATA-G------CATT-AT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TTT---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCGGG-ATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGT--ATCTCA--------A--ATTCTGAAAAT--TCTTCATCTAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTA-T-A-AACTG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA---C--------TGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TTC---TG---T---A------ACTAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCTATAAGATTA-TAGGATGATT--TTAT----CTAAA--GTA-TCT-------TTT-CCC-A-GGA--------GT------T-TTT-A-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTAA-----TA--ATACC-ATA-------TCATT-AC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TTCTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-CTG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---C------ACTAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCTAACAA-TTG-TTTA-TCATTTATAAT----TTGTA--AAAGCATA------TTT-CT--A-GCATTTTTATTGTTCAT-AT-TTTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TTC---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TCA---TAAGTT---A------ACAAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCT-------TA-TAA--TTGTTTATCAT----TTATA--ATG-TTTAGCAGGGTAT-CTC-TTGCTTTCTTGTTATTTATTGT-TTT-G-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCACA-----TA--TCA-T-GTA-GGAGT-TATTT-CC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTA---AACTGT--CATATCTAATGCTAAAAAAT-GTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGA--ATTTCA--TTTGT-AACGTT-TAAAATT--TCATTAT-TAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A---A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-TTT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGT--ATCTCA--------A--ATTCTGAAAAT--TCTTCATCTAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-CTG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGC--ACATCAAACTC-------TTTT---AAT--TCTTTTTCCAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-TTT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 666666666666666666 11111 1111111111111111111 111 1 222222 1111111 222222222222222 11111 22222222222222222222 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111 222222222222222 111 444444444 111111 11 11111 11111 111111111 11111111 5555555555555555555555555555555 111 11 1111 3333333333333 3333 111 55555555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 2222222 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 888 1 666666666666666666 77 1 22222 1 7777777777777777777 000 5 5 0 1 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 11111 777 1 4 0 4 444 1 1 1 1 1 55555555555555555555 4 55 11111111111111111111111 2 1 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888888888 4 0000 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 222222222 0 5 555555 33 5 66 1 22222 888 1 0 333 5 5555 0 2 4 5 1 1 33 0 2 0 111 0 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 5555555555555555555555555555555 1 4 5 2 0 0 1 000 0 66 0 111 1 1 1 0 5 5 1 33 1 9 4444 1 99 1 5555555555555 1111 1 1 1 000 6 666 1 5 222 1 1 77 1 5 5 4 33333333333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 2222222 77 1 7777 0 1 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . ... . .................. .. . ..... . ................... ... . . . . ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ..... ... . . . . ... . . . . . .................... . .. ....................... . . . . . . ........... .. . ... ... ........................................................................................................... ................ . .... ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . ............................... . . . . . . . ... . .. . ... . . . . . . . .. . . .... . .. . ............. .... . . . ... . ... . . ... . . .. . . . . .......................................................................... . ............. . . .. ............ ... .. . . . . . ....... .. . .... . . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 999 0 000000000000000000 99 7 77777 0 0000000000000000000 000 0 0 4 1 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 11111 888 1 0 7 0 777 0 4 6 0 0 00000000000000000000 0 55 99999999999999999999999 4 4 3 4 6 0 77777777777 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333 0 7777 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 000000000 8 0 000000 22 0 99 0 55555 888 0 2 222 0 1111 5 8 5 0 0 0 00 2 2 8 111 9 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 7777777777777777777777777777777 6 2 0 8 5 2 0 000 1 00 4 111 0 7 9 3 7 7 0 66 5 8 2222 0 22 0 2222222222222 0000 0 8 7 888 7 888 7 4 999 0 7 99 0 7 7 0 77777777777777777777777777777777777777777777777777777777777777777777777777 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 9999999 99 0 4444 6 4 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGT-A-CNTTTT-AAAAT--TCTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATAA-----TTA---TGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TTC---TG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-CTT---------TTTCTC-A-GCNTTCTTATTGTTTA-T-AT-TTT-A-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCACA-----TA--NNA-C-GTA-G---T-TCATT-AC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGT-A-CGTTTTGAAAAT--TCTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATAA-----TTA---TGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TTC---TG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-CTT---------TTTCTC-A-GCNTTCTTATTGTTTA-T-AT-TTT-A-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCACA-----TA--NNA-C-GTA-G---T-TCATT-AC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGA--ATTTCA--TTTGTTA-CGTTTAAAAAAA--ACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATAA-----TTA---TGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-TTT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTTC---TG---A---C------ACTAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCAATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--AAA-CTT---------TTTGTT-GTGCTTTTTTATTGTTTG-T-AT-CAG-AGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGCA-----TA--AGA-C-ATACGT--T-TCATT-AT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TCT---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCACC-----TG--TCA-T-ATATG---TATCATT-ACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TTCT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGC--ACGTCA-----GT-A-TTTTTT--ATATCATTTTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAAA-----TTA---TTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-CTT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATAC-----AGAAGTGAGTT---GTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCAGA-GTA---------TTTCT----ACTTTCTTTGTATCTATT-AT-TTT-A-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATACA-----TAGCCTG-T-GTG-A---C-TCATT-CCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTTC---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TTC---TG---TTACA------AGGAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCAACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTTC---AG---A---A------ATGAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATCAGGCATTTC---TGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-TAA-A-ATG-AGC--G--CGT-GATCG--TATGAAA--TC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGTATTTAA--TCC-T-A-CTTATT----AT--TTTTC-----TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-AA-----TTA---TGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-TTTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---------TG---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCTATCGGGTTA-TTT--TGAACCATTAT----TTCTA--ATA-CTC---------TTTCTCAA-GCGTTCTTATTGTTTA-C-ATGTTT-A-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCACA-----CA--TGA-CAATA-G------CATT-AT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TTT---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGT--ATCTCA--------A--ATTCTGAAAAT--TCTTCATC--TAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTAG-----TTA---TACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTA-T-A-AACTG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA---C--------TGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TTC---TG---T---A------ACTAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCTATAAGATTA-TAGGATGATT--TTAT----CTAAA--GTA-TCT---------TTTCCC-A-GGA--------GT-------T-TTT-A-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTAA-----TA--ATACC-ATA-------TCATT-AC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TTCTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-CTG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---C------ACTAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCTAACAA-TTG-TTTA-TCATTTATAAT----TTGTA--AAAGCATA--------TTTCT--A-GCATTTTTATTGTTCA-T-AT-TTTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TTC---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TCA---TAAGTT---A------ACAAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCT-------TA-TAA--TTGTTTATCAT----TTATA--ATG-TTTAGCAGGGTATCTCTT---GCTTTCTTGTTATTTA-TTGT-TTT-G-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCACA-----TA--TCA-T-GTA-GGAGT-TATTT-CC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTA---AACTGT--CATATCTAATGCTAAAAAAT-GTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGA--ATTTCA--TTTGT-AACGTTT--AAAAT--T--TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATAT-----TTAATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A---A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A-----------------------A-A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA-AT--G--T---CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATAA-----TTA---TGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-TTT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGT--ATCTCA--------A--ATTCTGAAAAT--TCTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAAA-----TTA---TACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-CTG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGC--ACATCAAACTC-------TTTT---AAT--TCTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATAG-----TTA---TTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-TTT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 55555555555 111111111 1111111111111111111 111 1 222222 1111111 222222222222222 111111111 222222222222222222222 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111 222222222222222 111 444444444 111111 11 11111 11111 111111111 11111111 4444444444444444444444444444444444 111 11 1111 33333333333333 333 11111 11111 5555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 2222222 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 888 1 33333333333 1 444444444 1 77 1 7777777777777777777 000 5 5 0 1 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 1 555555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888888888 4 0000 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 222222222 0 5 555555 33 5 66 1 22222 888 1 0 333 5 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 4444444444444444444444444444444444 4 5 2 0 0 1 000 0 66 0 111 1 1 1 0 3 5 1 33 1 9 4444 1 99 1 55555555555555 111 1 1 1 55555 6 6 1 5 222 1 1 77 1 5 5 4 44444 3333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 2222222 77 1 7777 0 1 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . ... . ........... . ......... . .. . ................... ... . . . . ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . . ..................... . .. ....................... . . . . . ........... .. . ... ... ........................................................................................................... ................ . .... ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . .................................. . . . . . . ... . .. . ... . . . . . . . .. . . .... . .. . .............. ... . . . ..... . . . . ... . . .. . . . . ..... ................................................................... . ............. . . .. ............ ... .. . . . . . ....... .. . .... . . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 999 0 11111111111 6 000000000 7 99 0 0000000000000000000 000 0 0 4 1 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 6 0 0 000000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333 0 7777 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 000000000 8 0 000000 22 0 99 0 55555 888 0 2 222 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 1111111111111111111111111111111111 2 0 8 5 2 0 000 1 00 4 111 0 7 9 3 6 7 0 66 5 8 2222 0 22 0 22222222222222 000 0 8 7 00000 7 7 7 4 999 0 7 99 0 7 7 0 33333 1111111111111111111111111111111111111111111111111111111111111111111 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 9999999 99 0 4444 6 4 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGT-ANTTTTTAAA--ATT-CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---AAC------TAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-C-TN---------TTTCTCA-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGT-ACNTTTTAAA--ATT-CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---AAC------TAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCTATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-C-TT---------TTTCTCA-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGA--ATTTCA--TTTGTTACGTTTAAAA--AAAACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-T-TT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTT---CTG---A---CAC------TAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCAATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--AAA-C-TT---------TTTGTTGTGCTTTTTTATTGTTTG-T-A-T-CAGAGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGC-----ATA--AGA-C-ATACGT--T-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TCT---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCAC-----CTG--TCA-T-ATATG---TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TTCT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGC--ACGTCA-----GT-ATTTTTTATATCATT--TTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-C-TT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCAGA-G-TA---------TTTCT---ACTTTCTTTGTATCTATT-A-T-TTTA-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATAC-----ATAGCCTG-T-GTG-A---C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTTC---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TT---CTG---TTACAAG------GAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCAACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTT---CAG---A---AAT------GAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-T-A-A-AATG-AGC--GCG--T-GATCG--TAT--GAAATC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGTATTTAA--TCC-T-ACTTATTA------T-TTT--TC--TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-T-TTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---T------G---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCTATCGGGTTA-TTT--TGAACCATTAT----TTCTA--ATA-C-TC---------TTTCTCAAGCGTTCTTATTGTTTA-C-A-TGTTTA-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCAC-----ACA--TGA-CAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TTT---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGT--ATCTCA--------AATTCTGAAA--ATT-CTTCATC--TAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTA-T-A-AAC-TG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA---C--------TGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TT---CTG---T---AAC------TAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCTATAAGATTA-TAGGATGATT--TTAT----CTAAA--GTA-T-CT---------TTTCCCA-GGA--------GT--------T-TTTA-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTA-----ATA--ATACC-ATA-------TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TTCTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-C-TG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---CAC------TAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCTAAC-AATTG-TTTA-TCATTTATAAT----TTGTA--AAAGCATA---------TTTCT-A-GCATTTTTATTGTTCA-T-ATT-TTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TTC---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TC---ATAAGTT---AAC------AAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCT-------TA-TAA--TTGTTTATCAT----TTATA--ATG-T-TTAGCAGGGTATCTCTT--GCTTTCTTGTTATTTA-TTG-T-TTTG-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCAC-----ATA--TCA-T-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTA---AACTGT--CATATCTAATGCTAAAAAAT-GTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGA--ATTTCA--TTTGT-AACGTTTAAA--ATT---TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A----A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-T-TT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGT--ATCTCA--------AATTCTGAAA--ATT-CTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-C-TG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGC--ACATCAAACTC------TTTTAA----TT-CTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-T-TT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 444444444 1111111111 1111111111111111111 111 1 222222 1111111 222222222222222 111111111 222222222222222222222 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111 222222222222222 111 444444444 111111 11 11111 11111 111111111 11111111 4444444444444444444444444444444444 111 11 1111 2222 333 11111 11111 5555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 222222222 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 888 1 444444444 6666666666 1 77 1 7777777777777777777 000 5 5 0 1 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 1 555555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888888888 4 0000 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 222222222 0 5 555555 33 5 66 1 22222 888 1 0 333 5 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 4444444444444444444444444444444444 4 5 2 0 0 1 000 0 66 0 111 1 1 77 66 5 1 99 4 9 4444 1 99 1 3333 1 111 1 1 1 55555 6 6 1 5 222 1 1 77 1 5 5 4 44444 3333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 111111111 77 1 7777 3 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . ... . ......... .......... . .. . ................... ... . . . . ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . . ..................... . .. ....................... . . . . . ........... .. . ... ... ........................................................................................................... ................ . .... ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . .................................. . . . . . . ... . .. . ... . . .. .. . . .. . . .... . .. . .... . ... . . . ..... . . . . ... . . .. . . . . ..... ................................................................... . ............. . . .. ............ ... .. . . . . . ......... .. . .... . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 999 0 666666666 1111111111 7 99 0 0000000000000000000 000 0 0 4 1 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 6 0 0 000000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333 0 7777 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 000000000 8 0 000000 22 0 99 0 55555 888 0 2 222 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 1111111111111111111111111111111111 2 0 8 5 2 0 000 1 00 4 111 0 7 66 66 7 0 33 0 8 2222 0 22 0 5555 0 000 0 8 7 00000 7 7 7 4 999 0 7 99 0 7 7 0 33333 1111111111111111111111111111111111111111111111111111111111111111111 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 000000000 99 0 4444 9 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGTAATTTTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---AAC------TAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--ANA-C--TNTTTCTCA-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TT-C---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCA--TTCGTANTTTTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---AAC------TAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TTATCTATTAT----TTNTA--ANA-C--TNTTTCTCA-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TT-C---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGA--ATTTCA--TTTGTTACGTTTAAA--AAAAACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-T-TT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTT---CTG---A---CAC------TAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCA-ATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--AAA-C--TTTTTGTTGTGCTTTTTTATTGTTTG-T-A-T-CAGAGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGC-----ATA--AGA-C-ATACGT--T-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TC-T---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCAC-----CTG--TCA-T-ATATG---TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TT-CT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGC--ACGTCA-----GTATTTTTTATATCATT---TTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-C-TT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG-----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCAGA-G--TATTTCT---ACTTTCTTTGTATCTATT-A-T-TTTA-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATAC-----ATAGCCTG-T-GTG-A---C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTT-C---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TT---CTG---TTACAAG------GAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCA-ACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTT---CAG---A---AAT------GAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-T-A-A-AATG-AGC--GCG--T-GATCG--TAT--GAAATC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGTATTTAA--TCC-TACTTATTA------T--TTT--TC--TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-T-TTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---T------G---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCT-ATCGGGTTA-TTT--TGAACCATTAT----TTCTA--ATA-C--TCTTTCTCAAGCGTTCTTATTGTTTA-C-A-TGTTTA-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCAC-----ACA--TGA-CAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TT-T---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGT--ATCTCA-------AATTCTGAAA--ATT--CTTCATC--TAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTA-T-A-AAC-TG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA---C--------TGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TT---CTG---T---AAC------TAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCT-ATAAGATTA-TAGGATGATT--TTAT----CTAAA--GTA-T--CTTTTCCCA-GGA--------GT--------T-TTTA-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTA-----ATA--ATACC-ATA-------TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TT-CTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-C-TG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---CAC------TAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCT-AAC-AATTG-TTTA-TCATTTATAAT----TTGTA--AAAGCA-TATTTCT-A-GCATTTTTATTGTTCA-T-ATT-TTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TT-C---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TC---ATAAGTT---AAC------AAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCTTAT--AATTG-TTTA-TCATTTATAAT----GTTTA--GCA-GGGTATCTCTT--GCTTTCTTGTTATTTA-TTG-T-TTTG-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCAC-----ATA--TCA-T-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTAA---A-CTGT--CATATCTAATGCTA-AAAAATGTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGA--ATTTCA--TTTGTAACGTTTAAA--ATT----TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A----A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-T-TT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGT--ATCTCA-------AATTCTGAAA--ATT--CTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-C-TG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGC--ACATCAAACTC-----TTTTAA----TT--CTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-T-TT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 44444 111 1111111111111111111 111 1 222222 1111111 222222222222222 111111111 22222222222222222222 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111 222222222222222 111 444444444 111111 11 11111 11111 111111111 11111111 4444444444444444444444444444444444 111 11 1111 22222222222 333 11111 11111 5555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 222222222 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 888 1 33333 1 5 77 444 1 77 1 7777777777777777777 000 5 5 0 1 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 1 55555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888888888 4 0000 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 222222222 0 5 555555 33 5 66 1 22222 888 1 0 333 5 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 4444444444444444444444444444444444 4 5 2 0 0 1 000 0 66 0 111 1 1 77 66 5 1 99 1 9 4444 77777777777 1 111 1 1 1 55555 6 6 1 5 222 1 1 77 1 5 5 4 44444 3333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 111111111 77 1 7777 3 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . ... . ..... . . .. ... . .. . ................... ... . . . . ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . . .................... . .. ....................... . . . . . ........... .. . ... ... ........................................................................................................... ................ . .... ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . .................................. . . . . . . ... . .. . ... . . .. .. . . .. . . .... ........... . ... . . . ..... . . . . ... . . .. . . . . ..... ................................................................... . ............. . . .. ............ ... .. . . . . . ......... .. . .... . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 999 0 99999 1 4 99 444 7 99 0 0000000000000000000 000 0 0 4 1 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 6 0 0 00000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333 0 7777 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 000000000 8 0 000000 22 0 99 0 55555 888 0 2 222 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 1111111111111111111111111111111111 2 0 8 5 2 0 000 1 00 4 111 0 7 66 66 7 0 33 0 8 2222 33333333333 0 000 0 8 7 00000 7 7 7 4 999 0 7 99 0 7 7 0 33333 1111111111111111111111111111111111111111111111111111111111111111111 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 000000000 99 0 4444 9 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCAT--GTAACTCTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TTC---TG---T---AAC------TAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTCA-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TT-C---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGN--ATNTCATTCGTAATTTTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-CTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TTC---TG---T---AAC------TAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTCA-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TT-C---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGA--ATTTCATTTGTTACGTTTAAA--AAAAACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-TTT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTTC---TG---A---CAC------TAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCA-ATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--A--AA-C--TTTTTGTTGTGCTTTTTTATTGTTTG-T-A-T-CAGAGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGC-----ATA--AGA-C-ATACGT--T-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TC-T---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCAC-----CTG--TCA-T-ATATG---TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TT-CT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGC--ACGTCA---GTATTTTTTATATCATT---TTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-CTT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG-----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCA--GA-G--TATTTCT---ACTTTCTTTGTATCTATT-A-T-TTTA-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATAC-----ATAGCCTG-T-GTG-A---C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTT-C---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TTC---TG---TTACAAG------GAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCA-ACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTTC---AG---A---AAT------GAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-TAA-A-ATG-AGC--G--CGT-GATCG--TATGAAA--TC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGTATTTAATCC-TACTTATTA------T--TTT--TC--TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-TTTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---T------G---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCT-ATCGGGTTA-TTT--TGAACCATTAT----TTCTA--A--TA-C--TCTTTCTCAAGCGTTCTTATTGTTTA-C-A-TGTTTA-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCAC-----ACA--TGA-CAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TT-T---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGT--ATCTCA-----AATTCTGAAA--ATT--CTTCATC--TAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTTC-ACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTA-T-A-AACTG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA---C--------TGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TTC---TG---T---AAC------TAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCT-ATAAGATTA-TAGGATGATT--TTA------TCTA--AAGTA-T--CTTTTCCCA-GGA--------GT--------T-TTTA-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTA-----ATA--ATACC-ATA-------TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TT-CTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-CTG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---CAC------TAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCT-AAC-AATTG-TTTA-TCATTTATAAT----TTGTA--A--AAGCA-TATTTCT-A-GCATTTTTATTGTTCA-T-ATT-TTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TT-C---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TCA---TAAGTT---AAC------AAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCTTAT--AATTG-TTTA-TCATTTATAAT----GTTTA--G--CA-GGGTATCTCTT--GCTTTCTTGTTATTTA-TTG-T-TTTG-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCAC-----ATA--TCA-T-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTAA---A-CTGT--CATATCTAATGCTA-AAAAATGTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGA--ATTTCATTTGTAACGTTTAAA--ATT----TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A---A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-TTT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGT--ATCTCA-----AATTCTGAAA--ATT--CTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-CTG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGC--ACATCA-----AACTCTTTTA--ATT--CTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-TTT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 44444 111 1111111111111111111 111 222222 1111111 222222222222222 111111 111111111 2222222222222222222 33333333333333333333333 1111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333333333333333333333333 222222222222222 111 444444444444444444 111111 11 11111 11111 111111111 11111111 5555555555555555555555555555555 111 11 1111 22222222222 3333 11111 11111 5555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 2222222 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 1 6 00000 88888 5 77 555 77 1 7777777777777777777 000 5 777 6 222222 777 6666666 0 888 1 5 22 666666666666666 777777 66 1 6 4 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 5555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 4444444444 7 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222222222222222222222 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 333333333333333333 5 555555 22 5 66 1 22222 888 1 0 333 5 3 444 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 5555555555555555555555555555555 1 4 5 2 0 0 1 000 0 66 0 111 1 1 77 66 5 1 99 1 9 4444 77777777777 1 1111 1 1 1 55555 6 6 1 5 222 1 1 77 1 5 5 4 44444 3333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 2222222 77 1 7777 0 1 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . . . ..... ..... . .. ... .. . ................... ... . ... . ...... ... ....... . ... . . .. ............... ...... .. . . . . . . . .. . ......... . . . . ... . . . . ................... . .. ....................... . . . . . .......... . . ... ... ........................................................................................................... ........................ ..... . . ...... ............... .. . ... . . . . . . . . . . .................. . ...... .. . .. . ..... ... . . ... . . ... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . ............................... . . . . . . . ... . .. . ... . . .. .. . . .. . . .... ........... . .... . . . ..... . . . . ... . . .. . . . . ..... ................................................................... . ............. . . .. ............ ... .. . . . . . ....... .. . .... . . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 0 6 33333 33333 4 99 777 99 0 0000000000000000000 000 0 444 9 000000 222 2222222 8 888 2 0 88 000000000000000 555555 99 0 1 4 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 0 0 0000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 6666666666 8 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888888888888888888888888 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 222222222222222222 0 000000 00 0 99 0 55555 888 0 2 222 0 9 111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 7777777777777777777777777777777 6 2 0 8 5 2 0 000 1 00 4 111 0 7 66 66 7 0 33 0 8 2222 33333333333 0 0000 0 8 7 00000 7 7 7 4 999 0 7 99 0 7 7 0 33333 1111111111111111111111111111111111111111111111111111111111111111111 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 9999999 99 0 4444 6 4 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCAT--GTAA--CT-CTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTNATAAAA-N-G--TTTG-GTTTCTTT-------TAAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTC---TTTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-ACTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-TANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAACTG-TATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTC-A-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCAT--GTAA--CT-CTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTTATAAAA-N-G--TTTG-GTTTCTTT-------TAAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTC---TTTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-ACTN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-TANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAATTG-TATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTC-A-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGAATTTCATTTGTTA--CG-TTTAAA--AAAAACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTT-------AAGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATT---TTTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-ATTT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-TATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTC-TATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTT---CTG---A---C------ACTAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCA-ATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--A--AA-C--TTTTTGTT-GTGCTTTTTTATTGTTTG-T-A-T-CAGAGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGC-----ATA--AGA-C-ATACGT--T-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TCT---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCAC-----CTG--TCA-T-ATATG---TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TTCT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGCACGTCA---GTAT--TT-TTTATATCATT---TTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTTC-ATAAAA-G-GATTTTG-TTTTATTT-------TAAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATC---TTTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-ACTT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-CACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTG-TATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG-----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCA--GA-G--TATTTCT----ACTTTCTTTGTATCTATT-A-T-TTTA-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATAC-----ATAGCCTG-T-GTG-A---C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTTC---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TT---CTG---TTACA------AGGAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCA-ACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTT---CAG---A---A------ATGAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-TAA-AATG-AGC--G--CGT-GATCG--TATGAAA--TC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-AAGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGT---AT--TTAATCCTACTTA-----TT--ATTTTTC--TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGT-------TAAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTG---TTTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-ATTTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-ACATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTG-TATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---------TG---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCT-ATCGGGTTA-TTT--TGAACCATTAT----TTCTA--A--TA-C--TCTTTCTCAA-GCGTTCTTATTGTTTA-C-A-TGTTTA-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCAC-----ACA--TGA-CAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TTT---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGTATCTCA-----AA--TT-CTGAAA--ATT--CTTCATC--TAAATTAGTATC--CTAAA--GC--T--CTGCACCCCTT---CTTGAATATAAG-TTTTCACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAA-TTTT-GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAA-GTTTTTTTCCATCCTCTA-TAA-ACTG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-ATTAATGATA-AA-TCATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---T-----------AACTGTTAATTTGTTATTTG-GATTATTG--TCT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TA------TTTAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TT---CTG---T---A------ACTAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCT-ATAAGATTA-TAGGATGATT--TTA------TCTA--AAGTA-T--CTTTTCCC-A-GGA--------GT--------T-TTTA-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTA-----ATA--ATACC-ATA-------TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TTCTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCACTG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-TACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTG-TAATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---C------ACTAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCT-AAC-AATTG-TTTA-TCATTTATAAT----TTGTA--A--AAGCA-TATTTCT--A-GCATTTTTATTGTTCA-T-ATT-TTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TTC---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTG-AATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TC---ATAAGTT---A------ACAAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCTTAT--AATTG-TTTA-TCATTTATAAT----GTTTA--G--CA-GGGTATCTCTT---GCTTTCTTGTTATTTA-TTG-T-TTTG-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCAC-----ATA--TCA-T-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTA---AACTGT--CATATCTAATGCTAAAAAAT-GTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGAATTTCATTTGTAA--CG-TTTAAA--ATT----TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTT-------AAGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CC---TTTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A--A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A-------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC-----------------------------TATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTT-------TAATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGG---TGTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---ATTT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-TGTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTG-AATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGTATCTCA-----AA--TT-CTGAAA--ATT--CTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTG-------TAAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGA---TTTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-ACTG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACTAATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGCACATCA-----AA--CT-CTTTTA--ATT--CTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATA-GATTTTTATAAAA-ACA--CATG-GTTTCTTT-------TAAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTC---TTTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-ATTT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-GAATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 44444 111 1111111111111111111 111 222222 1111111 222222222222222 111111111 222222222222222222222 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111 222222222222222 111 444444444 111111 11 11111 11111 111111111 11111111 5555555555555555555555555555555 111 11 1111 22222222222 3333 11111 11111 5555555555555555555555555555555555555555555555555555555555555555555 2222222222222 222222222222 111 1 2222222 5555555555555555555555555555555 11 111 111 11 2222222 222222
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 1 6 00000 88888 5 77 555 77 1 7777777777777777777 000 5 0 99 222222 777 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 1 555555555555555555555 4 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888888888 4 0000 99999 8 4 999999 000000000000000 66 4 555 1 1 1 1 1 1 1 1 1 0 888888 333333333 1 5 555555 33 5 66 1 22222 888 1 0 333 5 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 5555555555555555555555555555555 1 4 5 2 0 0 1 000 0 66 0 111 1 1 77 66 5 1 99 1 9 4444 77777777777 1 1111 1 1 1 55555 6 6 1 5 222 1 1 77 1 5 5 4 44444 3333333333333333333333333333333333333333333333333333333333333333333 1 8888888888888 5 5 77 777777777777 000 77 1 1 5 3 5 2222222 77 1 7777 0 1 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 555 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 5 2 22 1111111 55 111111
lowQualScore : . . . . . .. .. ........ ... .... ... .... . . . ..... ..... . .. ... .. . ................... ... . . .. ...... ... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . . ..................... . .. ....................... . . . . . ........... .. . ... ... ........................................................................................................... ................ . .... ..... . . ...... ............... .. . ... . . . . . . . . . . ...... ......... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . ............................... . . . . . . . ... . .. . ... . . .. .. . . .. . . .... ........... . .... . . . ..... . . . . ... . . .. . . . . ..... ................................................................... . ............. . . .. ............ ... .. . . . . . ....... .. . .... . . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. . . .. ....... .. ......
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 0 6 33333 33333 4 99 777 99 0 0000000000000000000 000 0 1 11 000000 222 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 6 0 0 000000000000000000000 0 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333 0 7777 77777 9 4 999999 666666666666666 11 4 777 9 0 0 0 0 0 0 0 0 4 999999 111111111 1 0 000000 22 0 99 0 55555 888 0 2 222 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 7777777777777777777777777777777 6 2 0 8 5 2 0 000 1 00 4 111 0 7 66 66 7 0 33 0 8 2222 33333333333 0 0000 0 8 7 00000 7 7 7 4 999 0 7 99 0 7 7 0 33333 1111111111111111111111111111111111111111111111111111111111111111111 0 3333333333333 7 3 99 333333333333 000 00 0 0 4 0 7 9999999 99 0 4444 6 4 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 0 3 66 0000000 77 999999
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCAT--GTAA--CT-CTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTCATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAACTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTC-A-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCAT--GTAA--CT-CTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTNATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAACTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTC-A-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGAATTTCATTTGTTA--CG-TTTAAA--AAAAACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAA-T-A-A-T-TT-AGTT-GCCCTC-GATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT---CAAA--T-CT-TTT-TTAACT--TGTCAGTC--T--CT--CTC--T-TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATC-GTCTATAA---T-A---AATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTT---CTG---A---C------ACTAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCA-ATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--A--AA-C--TTTTTGTT-GTGCTTTTTTATTGTTTG-T-A-T-CAGAGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGC-----ATA--AGA-C-ATACGT--T-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA-------TTATCGAA-GAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TCT---A-CAGT--TAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACC---A---AGACCCTGACAATTAACAGT--TAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCAC-----CTG--TCA-T-ATATG---TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA-------T-----AA-AAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TTCT--G-CTGT--CATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTT-TTGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CC---ATTTAGGCCTAGGCAATT--CAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGCACGTCA---GTAT--TT-TTTATATCATT---TTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTT-CATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACC-C-A-C-TT-AGCT-----TTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA---TAAA--T-TC-TTT-TT---C--TGTTG-TT--T--TT--GTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGT---TAA---T-AACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG-----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCA--GA-G--TATTTCT----ACTTTCTTTGTATCTATT-A-T-TTTA-AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATAC-----ATAGCCTG-T-GTG-A---C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTTCATT-AA-AGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTTC---AGATGT--TATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TT---CTG---TTACA------AGGAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCA-ACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTT---CAG---A---A------ATGAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAA-T-A-A-AATG-AGC--GCG--T-GATCG--TAT--GAAATC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTC-CGGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCTG-TTATCATT---A---AGGTACAAGCATTTA--AGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGT---AT--TTAATCCTACTTA-----TT--ATTTTTC--TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTA-T-G-A-T-TTCAGCTCGCC-----ATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT---TA------TT-TTT-CT---C--TATTA-TC--T--TT---TT--T-TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTC-AT---TTA---TTA-CGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---------TG---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCT-ATCGGGTTA-TTT--TGAACCATTAT----TTCTA--A--TA-C--TCTTTCTCAA-GCGTTCTTATTGTTTA-C-A-TGTTTA-TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCAC-----ACA--TGA-CAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA-------TTACTAAA-AAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TTT---A-CAGT--TAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTC-A-GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACT---A---AGACCTTGGCAATTAAC--TGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGTATCTCA-----AA--TT-CTGAAA--ATT--CTTCATC--TAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTT-CACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTA-T-A-AAC-TG-AGCT-A---TT-GATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT----AAT--T-TCATTT-TC---T--TGCAA-TT--CAATT--TTT--T-TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATC-GT---TAA-----------CTGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TT---CTG---T---A------ACTAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCT-ATAAGATTA-TAGGATGATT--TTA------TCTA--AAGTA-T--CTTTTCCC-A-GGA--------GT--------T-TTTA-TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTA-----ATA--ATACC-ATA-------TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATAATC-------CTA-T-AA-AAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TTCTAAA-CTGT--TATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTC-A-GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACC---A---AGGCCCTGACAATTAAC--TGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAA-T-CCA-C-TG-AGCT----CGT-GATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT-TT-CCC-TT---T--TGTC--TT--T--TT--CTT--T-TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTC-AT---TAA---TTA-TGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---C------ACTAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCT-AAC-AATTG-TTTA-TCATTTATAAT----TTGTA--A--AAGCA-TATTTCT--A-GCATTTTTATTGTTCA-T-ATT-TTTA-TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA-------TTCTT-AT-AAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TTC---A-A-GTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTG-TTGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCATGA---AGGCCACGGCAATT--CAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA---TAAG--T-TC-TTT-TT---C--TGTT--------------TT--T-TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTC-AT---TAA---T-AACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TC---ATAAGTT---A------ACAAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCTTAT--AATTG-TTTA-TCATTTATAAT----GTTTA--G--CA-GGGTATCTCTT---GCTTTCTTGTTATTTA-TTG-T-TTTG-TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCAC-----ATA--TCA-T-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA-------TT-TT-GATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTA---AACTGT--CATATCTAATGCTAAAAAAT-GTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTT-CTGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACC---ATACAGGCCGCAGCAGTT--TAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGAATTTCATTTGTAA--CG-TTTAAA--ATT----TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAA-T-A-A----A-AGTT-GCCCTT-GATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT---CAAA--TATC-TTC-CT---TACTGTCA--A--T--GT--CTC--T-TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC----------------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAG-T---A-T-TT-A-CT-GCCCTA-GATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT---TAAA--A-TA-ATTATT---T--TTCCA-TG--T--TT--CTT--T-T-------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTC-AT---TAAAGGT-A---AACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGTATCTCA-----AA--TT-CTGAAA--ATT--CTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTA-TAC-A-C-TG-AGCT----CTT-GATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A----TAAT--T-TCATTT-TC---T--TGTGA-TTCAT--TTAATTT--T-TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGCACATCA-----AA--CT-CTTTTA--ATT--CTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATAGATTTTT-ATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACC-C-A-T-TT----T-GCTTTT-GATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA---TAA
blockSeqs : C A C A C TT TA ATACTG TGT AACC CGA ATAA T C G TTTGT TCCTA T TC A AT A TATCTGCTCGTTT TGA T TT GGAT TG TGTGTGT ACA A T CT CAATAATGTCT ATC GAT AC T CA A A G A AC A AGGCAT T G T CAT G T G A T TGATTTCAGCTCGCC A AA CTATATGTCCTTTG T C A G A TTAATGATA GT G TGG GTA TCCATTGACTGGATTTTTTTCAGATGAGAGATTGTGTTCGAGTAATTCAATTTATTA CAAAGCTGGAAATGTG C TGAA CAAT A A TAC GATTCATTTAAT GT G TAT C A C T T G T T A AGT TAACA T T GTATA GT G AA T TGAAG AAA A AAC G CTTT A C C G G GC C TGA A TCT TG AACA GTCCC G C A T AT A T CAGG A TCC G AGTACTTTA GTCGCA A AAC CG C T AAAAAATCATAAGTTA G G C G A ACG A AAG G G TT CA C T GA T C CAAC GCAGAG A CAA T T C TTA G . A A ACT T G GT G A A G ACCAA TCATATATGTATCATTACCTATATCATTTATAATCTTAACACATATTTTC A AATGTTTTCATT T G TC TTGATCTG CCT CT A T T T G TAAACT AA T AAGT T ATATTAATCATGGATTTCAT C TT T T . AT C GG T G CA T A G A CG A C TT AC T TA T G C G AC T AT A T G G GTA C G TC . T TC ATTT TA CAGG
blockSeqs : G T A . C TT TA ATAGA . TTCA . . A T C TTT TT A . C . T TTCTAGTTGAT . T TG GTG TT . . A . CT AATCATGTCG GTG . . T T A G . . CC T TTTA T . . AT C A T T A TAAAATGAGCGCG . . TGAAATCACCGTTC T T G G . TACATATCT TT G . . CTCCAAATTTAAAAAAGCGTAGAGTCTTTCTTTTGTAAGAATTTCTAAATTATTT TT . A ATA A . C AATTCAATTT . . AT A T A C C A G G T AT TTACG T . GATTA CT . . T . . T CTG . TTGT G C . T G TT C CCT . . GG CA G . T A A AC G A . T T . . GTCA G . A . A GATTCTGTTACA G A . T A . G TGA T A A TA . A A G T . AAGTAT C CA G A T TAT . . A A ATC A A . A . . A . GCCTGTGTGACTCATTCCATATATCTTTAAGGAATCTG T TTACTA . G . TTCATCTT . CA G G G G . TGCT . T TGAA G TCACTATCCGAAATGTGAC G . T . . GG G . T A A . . A G CA T T CG CC . . T G A G AA T AT G G A T TA T . . . T GA ATGA CA AAGG
blockSeqs : T T T . . GT TA TAATA . TACA . . A T T GT TT A . C . A CTAAAGCTCTG . T TT TTG GA . . C . TG AAAATAGCTT ATC . . A T G T . . AA T A T . . AT T A T C A TAAACTGAGCTA . . CTAAATGACCCTGC T C T T . CACTTTCA TC . . . TGTCTAGTTCTTCTATATTTTGATCATTTAATGAATTTTCAAATTCTTCT AT . T AT . . C TGTTTTTG . . T A A A T T A A A T GT TTATG C . GAATA T . . T . . G AAG . CTTT C T . A T AT C GGA . . TG CA C . T A A A T T . T C . . TGAG A . A . G AGGCTTTCAGAA T A . A C . A GTA A G T CG . T A G T . AAAGCA T A A A T TTG . . T T GCG T G . A . . T . TGACAATAGCATTATTATTTTATTGTTCAGTTTTAAGT G TTCTT . A . GAATCAT . GG A C T C . AGAT . A TGCA T TCTGGGTCAGATATATAAT T . C . . TC C . C T A . . T C TA A C TT GT . . A A C G AT C GG G A T T T T . . . C GA ATAC TT AACT
blockSeqs : G G A . . . TG AATAA . TTCA . . A A C . CG A . C . T TATTGGAGTTT . T TC ACA CA . . T . CA TATTATTTTA TGG . . A A A C . . CT T A G . . GA T A G T A TCCACTGAGCTC . . CGAGGTAGCCGTTC T G G G . AAGCTATG CT . . . GTTCAAGTCGTTGTGTATGCTCTGGGATAAGGTTATGTTCCAATTTTTTT AC . T TT . . T CATGTTTC . . A T T A G G T T A T AT TAACA C . GGATG T . . G . . T AAC . CTTA T A . T T GG G AGA . . TG CT C . C C A T T G . G C . . ATTA T . G . A AGTGTAACAGAT T A . T A . A ACA G G T AA . A . C . . GCAGGG A T A G T CA . . A T ATT G G . A . . G . ATACCATATCATTACTTTTTACAGTTTCTGCTGTCATC T CTAT . C . GAGTCAG . AA T T . T . AACT . T AACT T TCCCTGTCTTTCATCT T . A . . TA A . T T T . . T T TG G A CT CT . . G A T A AA C CG C A T C T T . . . T G A CT AACT
blockSeqs : T T . . . T TCTTA . GTC . . T T A . TT T . . . A TTCAAGTACTG . T C TT TG . . T . CT ACTATATCAT TGA . . C T T T . . AA T G G . . TC A T A C A TAAAAGTTGCCC . . TAATACAGCCTTTT A C C A . TGTTTGTA TT . . . TGTTAGATTCCTCTATATTTTCTTTATTTAGTGATTTTTCAATTTTATCA AT . A GT . . T TATCTTT . . T C A T T T A C T A AT AGGTA T . CAAT T . . T . . A ATA . TACC A C . G G AT T TGA . . GG GT T . A A A T T T . A C . . AAGA C . T . T AAATCGCCTGTC T G . T G . T TAT T A T C . T . C . . ATAC A . T . . . . . A T AAA A A . G . . A . TCATGTAGGAGTTATTTCCCATGTCATTGATAGTTTTA C TTTT . G . AAGAT . TT T C . T . ACA . A CAGA T TCCTTATATTCAT A . . . . G A . . G A . . G T TA T T A AC . . A G T A TT C CG A C T A A A . . . T G A AC CAAT
blockSeqs : . . . A AACC . . . . . C . . CT . . . . A TATGTGAT . . C TG TG . . C . TT ACGATTGAC GTC . . A T C A . . AG A A G . . GT A A G A C TATTTACTGCCC . . TCATATAACCTTTT C G A G . CTAATGAT CT . . . GTTCATGTCGATGTTTATGCTCTGGGATAAGGTTATGTTCCTTTTTTTT AC . T AA . . C CTTTTTC . . A C T T G G T T G A AT . C . TGA . . . A . . T GAG . TTGT T . . A T CT T AGA . . C CA C . T A A A T A . T T . . AGTG . . C . T GATTTTCTGTA A G . A T . . AAA G . . . . T . . . T G . . T . . A . AAAGTGTCATTTCCTATTTTCTCCATCTCTTGT T T . . . CAT . CA G A . . . AA . T TAAT . . . A G CA C T A T . . T G C A T T TT G T G T A G . . . . . A GC TAGG
blockSeqs : T GA . . . T . T TTTATT CC . . T T A A . . CT T A G . . AT T T G G A TACACTGAGCTC . . AGGTAGCCATTC T T A G . GAATATTC TT . . . TTGTAACTCATTAACATTATTTTGATTTAAATATATTTCTATGTG T . T TT . . T CAATGTC . . T A A A C A T C T T . . . . G . . . A . . A CA . . . . . T A C . ACT . . A . T . A A A A A T . G A . . TGTA . . A . . . . . T . . . . . AT . . G T T C . . .
blockSeqs : . T T . . AC . G T . . GA T A G T G CCCATTTTGCTT . . ACATATTC G . C . . ACATTTG T . . . TTCTCATTGGCCGAGATAGTCAGGTTTTGATTTTATTTCTAGCT T . A . . . T T . . . A A . . A . T A A A . A C . . AAAA
blockSeqs : . . A A T . A T CCCACTTAGCT . . CAATGACC . . . . . A T . . . GACAGTAAATTGTTTCTATTTCTTTTTTTCTGAACTAAGATC T . . . . . . T . . . . .
blockSeqs : T . . .
blockSeqs : T . . .
blockSeqCons : TA TTT** C** CG* TACACTNNGCTC********* C***** CATTTTT******** AT**** TNACG**** GAATA* A* GNAGAG***** CA** TTN** TTCTT******** AGCT*** CT* AT***** NAGN**
originalCons : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCAT--GTAA--CT-CTTAAA--ATT--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTCATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAA-T-N-A-C-TN-AGCT-GCCCTT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TT---T--TGTCA-TT--T--TT--CTT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTC-GT---TAA---T-A-CGAACTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTA--A--NA-C--TNTTTCTC-A-GCNTTCTTATTGTTTA-T-A-T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA-------TTATT-AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC---A-CTGT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTC-NTGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACC---A---AGGCCCCGGCAATTAACAGTGACAAAAT
finalCons : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCATTT--AA--CT-CTTAAA--ATTC--TTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTCATAAAA-N-G--TTCG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAATACACTNNGCTC---------TT-GATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT---TAAN--T-TC-TTT-TTC-----TGTCATTTTT--------TT--T-TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTCAT----TAATNACG----AACTGT-ATTTTATCATTTGGAATA-TTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTAGNAGAG-----TNTTTCTCA--GCNTTCTTATTGTTTATTN--T-TTTA-TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANATTCTT--------AA-AAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTCAGCT---GT--TANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTCCT-GTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACCAT-----AGGCCCCGGCAATTNAGN--GACAAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT
Alignments
lowQualScore : 1 11 22222222 111 1111 111 1111 33333333 111111 1111111111111111111 111 22222222222 1111111 222222222222222 111111111 111 33333333333333333333333 11111111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333333333 11111 111111111111111111 111 11111 111111 11 11111 11111 111111111 11111111 5555555555555555555555555555555 111 11 1111 11 3333 111111 111 11111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222222 111 1 1111 5555555555555555555555555555555 11 111 111 11 44444
lowQualScore : 1 1 1 5 1 66 55 00000000 000 2222 000 2222 5 1 6 77777777 88888 1 333333 77 1 7777777777777777777 000 5 0 99 88888888888 6666666 0 888 1 5 22 666666666666666 888 888 66 1 55 1 1 4 4 11 2 333333333 1 4 0 4 444 1 1 1 1 1 222 77 777 55 11111111111111111111111 2 6 2 1 4 44444444444 44 0 555 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222222222222222222222 22222 4 66 999999999999999999 777 9999 555 1 1 1 1 1 1 1 1 1 0 5 0 33333 1 5 555555 33 5 66 1 22222 888 1 0 333 5 5555 0 2 4 5 1 1 33 0 2 0 111 5 0 0 888 33 8888 33333 4 1 3 1 99 2 0 1 8888 4 666 4 666666666 88888888 0 7 888 66 0 5 1 5555555555555555555555555555555 1 4 5 2 0 0 1 000 0 66 0 111 1 1 77 66 5 1 99 1 9 4444 77 1 5 1 1111 1 1 444444 111 1 5 222 1 1 77 1 5 5 4 44444 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 77 777777777777 000 77 1 1 5 3 5 3333 1 7777 0 1 2222222222222222222222222222222 0 1 99 3 6 6 88 1 99 4 1 11 0 5 5 1 1 11 1 1 888 66 5 66 0 1 2 2 1 55 5 22 2 2 1 1 222 1 5 66 88 2 66 33333 55 1 44
lowQualScore : . . . . . .. .. ........ ... .... ... .... . . . ........ ..... . ...... .. . ................... ... . . .. ........... ....... . ... . . .. ............... ... ... .. . .. . . . . .. . ......... . . . . ... . . . . . ... .. ... .. ....................... . . . . . ........... .. . ... ... ........................................................................................................... ............................ ..... . .. .................. ... .... ... . . . . . . . . . . . . ..... . . ...... .. . .. . ..... ... . . ... . .... . . . . . . .. . . . ... . . . ... .. .... ..... . . . . .. . . . .... . ... . ......... ........ . . ... .. . . . ............................... . . . . . . . ... . .. . ... . . .. .. . . .. . . .... .. . . . .... . . ...... ... . . ... . . .. . . . . ..... ........................................................................................ . .. ............ ... .. . . . . . .... . .... . . ............................... . . .. . . . .. . .. . . .. . . . . . .. . . ... .. . .. . . . . . .. . .. . . . . ... . . .. .. . .. ..... .. . ..
lowQualScore : 0 0 0 7 4 77 11 66666666 000 6666 000 1111 4 0 6 33333333 33333 7 444444 99 0 0000000000000000000 000 0 1 88 99999999999 2222222 8 888 2 0 88 000000000000000 888 888 99 0 44 0 0 4 4 77 2 222222222 1 0 7 0 777 0 4 6 0 0 111 33 000 55 99999999999999999999999 4 3 4 6 0 66666666666 11 0 888 888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8888888888888888888888888888 00000 4 11 444444444444444444 888 4444 777 9 0 0 0 0 0 0 0 0 4 0 5 22222 1 0 000000 22 0 99 0 55555 888 0 2 222 0 1111 5 8 5 0 0 0 00 2 2 8 111 0 2 5 888 55 8888 11111 4 0 2 1 11 4 7 2 5555 8 222 0 000000000 00000000 4 6 888 00 1 7 0 7777777777777777777777777777777 6 2 0 8 5 2 0 000 1 00 4 111 0 7 66 66 7 0 33 0 8 2222 77 0 2 0 0000 0 8 888888 777 7 4 999 0 7 99 0 7 7 0 33333 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 99 333333333333 000 00 0 0 4 0 7 7777 0 4444 6 4 2222222222222222222222222222222 3 0 22 7 7 7 55 0 22 2 0 88 3 7 7 0 0 99 0 0 111 33 0 99 1 0 2 2 1 88 4 00 2 8 0 0 666 0 0 99 44 3 11 44444 77 0 00
consensus : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCATTT--A--A--CT-CTTAAAAT--T--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTCATAAAA-N-G--TTTG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAATAN--ACTNAG---CTCTTGATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT------TAAN----T-TCTT--TTT---C-T-GTCA--TT---TT---TTTT----TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTCG-TTAATNACGAACTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTAG-AGANTNTTTCTC-A-GCNTTCTTATTGTTTATTNTTTTA---TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA------TT-C-T-N-AAAAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC--AACTGTTANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTCN-TGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACCA--T--AGGCCCCGGCAATTAANNGACAAAAT
Reference ( family-211 ) : CTTTAAGCGTAANTGAAGCCTGNTCANATG-T-AATTAATACCTTCT-A-A-TGAATTT---GATTCTNCAGTTG---TAAG----TTTAGGNATNTCATTT--A--A--CT-CTTAAAAT--T--CTTCATC--TAAGTTNATATCTATTCGA--GT--T--T--CATCTCTA---CTTGAATATAAGTTTTTCATAAAA-N-G--TTCG-GTTTCTTTT-------AAAATATC---TGTCTGA-TCTGT--AN-AATAG-CTT-CCATCGTCT---TTT--TCNATTTTT-GGNATNA-TTTTAC-TGANATA---A-----TTATGTGAT-TCTAAATTAC-AAAA-ATANTTTGAAGGTTTTTCNCCNTCTTCAATAC--ACTNNG---CTCTTGATCT--TAC--NA--TA--G-CC-TT---C-ATTTTATNTTTNCGT-A-T-ANTTATA-AATTCATTTTT-TA---A---TT-T-T-C--TA-A-TTCG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAATTT-----TNT------TTCT-AA-TTN---T-CT--ATTTT-----------AT---TT-AT------TAAN----T-TCTT--TTT---C-T-GTCA--TT---TT---TTTT----TTTTA-A-AACTTGAATATGANATNGATTTNCCTCTNANTTCCATTANTAATGTTTCNAGAAATAGCTGGTCA-TTAATNACGAACTGT-ATTTTATCATTTG-GAATATTGT-TCA-ATAT--TNT-----CTGT---GTTATANACTGGTAANGCA-TATTGCTNTTTTATTTCNTCTATTT-TNTCATTNATTGTNTTTAAATAGTCTATATCACTTAAAAGNGAGTTATTGTG-CTTCCATAATCCCTTACC---ANGTT--CAAAAT----CGT-TAAAATNAATATTTAAA-ATNATCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTNCT---TA-ATGATG-ANGGT----AA---TT---CTG---T---A------ACTAGAAAGA-AATCNAGTCTTGCTTGTTTTAAAGGTNTTTTCCTTCTCCATGTATA---TCTTTTTAA-ATCCGGATAAAATTCTCTAAANGGGTCT-ATCAAATTA-TNT--TNATCTATTAT----TTCTAGNAGAGTNTTTCTC-A-GCNTTCTTATTGTTTATTNTTTTA---TAGTTGTAATAATCTAATTTNGGGTCTTGA--ACAANAT-T-AAAATCGCCAC-----ATA--NNA-C-GTA-G---T-TCA-TTAC-TATNTTAC---TTCTGCTTT----TA----------TC--AAAANA------TT-C-T-T-AAAAAAGA--TGGG--G--AG-TCTTTATTG---GGTCCATATACGGTAACAAGTGTNAANCTGTTNTTA-TTC--AGCTGTTANATCCGNNGCTATAAAATTACCC-------TCACGG---TCANA--TATGTG--TATGTACTTTGTANTCTAAGTTTTTACTAAATAA--AATCGC-AACA-CCTCGNGNAT--TTGACTTGACC-GAACTAAAAA-AACAA-TCACTNCCCCATTGNGCGTANATAAANTTTTCC-TGTANCTCG-G--TAAAATGNGTGTCTTGCAGACAATATATATGACACTTTTTNNCTTTTAGATANTNAAANACATC--AANT-CTTT--TCTG-GTTGAACCA--T--AGGCCCCGGCAATTNAGNGACAAAAT
gi|1 : CTTTAAGCGTAATTGAAGCCTGCTTAAAAG-T-AATTAA-ACCATCT-A-G-TGAATTT---GACTCTATTGATG---TAAG----TTTATGAATTTCATTT--GTTA--CG-TTTAAAAA--AAACGTTATT--TAAGTTTATATCTATTAGA--GT--T--T--CATCTCTA---CTTGAATA-AAGTTGCTGATAAAA-A-A--TTTGAGCTTCTTTA-------AGAATATC---TGTTTGA-TTAGT--AA-AATAG-CTT-CCATCATTT---TTT--TCAAGTTTT-GGTATTA-TTTTAC-TGGAATA---A-----TTATGTGAT-TCTAATTTGC-AAAA-ATAATTTGAAGGTTTTTCATCCTCTTCAATA---ATTTAGTTGCCCTCGATCT--TAT--CA--TA--G-CT-CCACGC-ATCTTAAGTTTTCGG-A-T-ATTTATA-AGTTCATTTTTGTA---A---TT-T-T-C--TA-A-TTGG-------TC-GA---T-----ATT-----------GTAAG--GTTT----TAGTTT-----TTT------TTCTTAA-TTG---T-CT--ATTTT-----------AT---TT-AT------CAAA----T-CTTT--TTTAACT-T-GTCAGTCT---CT---CTCT----TTTTA-A-AACTTGAATAAGATATTGACTTGCCTCTGATTTCCATTAGTAAGGTTTCAAGAAATAGCTGATCG-TCTATAATAAATTCT-ATTTTATCATTTG-CAAT-TTGT-TCA-ATAT--TAT-----AAAA---GTTATATATGGGTAATGCA-TTTTGTGCCTTAATTTCTTCGATTT-TATCATTTATTGTATTTAAATAGTCTATATCATTTAAAAGACTGTTATTGTG-CTTCCAGAGACCTTTACC---AGGTT--TAAAAT----TGT-TAAAAGAAATATTTAAA-ATAACCATTGAATGGT----CGGAT--CT-GTAAC---------TAGATTCAATA-T-G-A-CATTTATT---TA-ATGAAG-AGGGT----AATTTTT---CTG---A---C------ACTAACAAAA-AATCAAGCCTAGCCTGTTTTAAAGGTGTTTTACGCCTCCAGGTATA---GCGTTTTAATGTTC-GATAACATTCTCTAAATGGGTCA-ATCAAGTTA-TAT--TTTTCTTTTAT----TTCTA--AAACTTTTTGTT-GTGCTTTTTTATTGT---TTGTATCAGAGTAATTGCAGTAATCTAATTTCGGGTCTTGT--ACAATGT-T-GAAATCTCCGC-----ATA--AGA-C-ATACGT--T-TCA-TTAT-TATA-TAC---TTCTGCTTT----TA----------TC--AAAAGA------TT-A-T-CGAAGAAAAA--TGGG--G--AG-TCTTTATTG---GGTCCATATAAGGTTATAAGAGTAAATCTATTATTA-TCT--A-CAGTTAAATCTGCAATTATGTAATTACCC-------TCAGGG---TCAGAGGTATGTG--CATGTATAGTATAGTCTAAGTTTTTATTGAATAA--AATCGC--ACAGCCACGACTAT--TTGAGCTGACC-GAGGAGAAAA-GACAT-TTATTACCCCATTCTGAATTAATAAAATTTTCTATATAAGTTG-T--T-AAATGAATATCTTGTAAACAGTATATCTGACAGTTTTTTGCTTTCAAATAATCAAAAACATC--AAGT-CTTT--TATGAACTGAACCA-----AGACCCTGACAATTAACAGTTAAAAT
gi|10 : AATTAAACTTTGAATCAAGC--ACAAGAT-T-AAAATCGCCAC-----CTG--TCA-T-ATATG---TATCA-TTACCTATATCAT---TTATAATCT----TAACACATATTTTC--AAAAAA------T--------AAAAAGGA--TGAA--A--AGAT-----TTG---GGTCCATATACTGTAAGAAGTGTAAAT-TGTTTTGA-TTC--TGCTGTCATGTCAAGTGTCATGAAATTACCT-------TC-C-----TTATA--TTCAT---TATGCACCTTGCACTCAAAGTTTTTACTGAATAA--TATTGC-AACG-CCTCATGCAT--TAGATTTGATA-AAATTAAAAATAGCAG-TCACCGTTCTATTGAGCGTAAATAAACTTGTTT-TGTGACTCA-G--TAAAATGTGT-T---------------TATGACATTTTTTATCTTGTAAATATCGAAAGACGTC--TACT-CTCT--TTTG-GTTG--CCATTT--AGGCCTAGGCAATTCAGGGATAGAATtgtaaggtcagtcgccattgtgtgaaaatctatataaaatgaaggttaaatatgcatgacctagacatagaggaatactcaaactaaaaaacaaaaaagctacaaaagtgatcaacatattaatgctgtgcttaataaattgtgaaaaaatgcacatcattttggtgttaaaagattgaaaatgatgtcaatgtaatttacaattattgatacaaa
gi|11 : TGATGCCTCAGCACATG-T-AATTTTT-CCTTCT-ATACTG--TTG---GATTCGTC--TTGCGATAAT----TTT-GGCACGTCAGT------A--TT-TTTTATATCAT--TTTCA-----AGGTCAATATCTATGTGA---------T--CATTTTCATGACAAGAATATCAATTTT-CATAAAA-G-GATTTTG-TTTTATTTT-------AAATTATC---TGATTGA-T-TGTCAAT-AAT-G-TCT-CCATTATCT---TTTACTTTTTTTTT-GAAATAA-TTTTGC-TCACAAA---A-----TTATTTTTT-TCTAAATTGC-AAAA-A-AGTTTGTTGGTTTTTCACCTTCTTCAACCC--ACTTAG---CTTTAGATCT--CAC--TA--TAT-GTCC-TT---TGATTTTGTCATTACGTAA-C-ACTTTCA-AA-TCATTCTT-TA---A---TT-T-TGT--TA-A-TTCA-------TT-AACCTT-----ATT-----------TT--G--GTTT----AAActtgatattaatg
gi|12 : gacatttaatacaatgttttA-AAT-CATTCTT-TA---A---TT-T-T-G--TA-A-CTCA-------TT-AA---C-----ATT-----------AT-------TT----TGATTTAAATATAT------TTCT-A---TG---T-G---ATTTT-----------TT---TTCAA------TAAA----T-TCTT--TTT---C-T-GTTG--TT---TT---TGTTGTTGTTTTA-ATAACTTGCATATGCAATCGGTTTTCCTCGTCGCTCCAATATTAAGGTTTCATGAAATAA-TAATAAGTTAATAACAAATTGT-ATATTTTCATT-G-G----TTATGTCAGATAAAATTT-----ATGT---ATTATAAACTGGTAAACAA-TACTGCTTTTTTATTTTATCTACTT-TGTCATTGATTATGCTTAA----TCAATA-----CAGAAGTGAG---TTGTG-CTTCCATAATCCCTTACC---ATGTT------ATGTCCCAT-TTAAACCAATTCTTAG--------ATTGAATGGT----CAGAT--TT-ATAAC---------TAGATTGAATG-T-C-A-CACAT-CT---TA-Agatatttct
gi|13 : cTTTAA-ATCCGGATAAGATTCGCTAAAGGG-----ATCAAATAACTTT--TTATC-ATTATCAACTCCTGGCAGAGTATTTCT----ACTTTCTTTGTATCTATTATTTTA---AAGTTATAAT--TC--ATCTAGGGATTT-A--ACAAAATATAAAAATCAATAC-----ATAGCCTG-T-GTG-A---C-TCA-TTCCATATAT-----------CTTTAAGGAA----------TCTGAAAATAAATGTTTT-CAT-T-AAAGAA-A--TGGG--C--A-----TTAGTGCCTCATCCTTATACAGTAACTAATGCGAAGCGGT--TTAGTTC--AGATGTTATGTATGAAGCTACAAAATGACCcatatggatcaaaat
gi|14 : AATATTCCAA-GTAATCATAGAATGAT----CTGAT--CT-GTAAC---------TTGATGTAAT--T-G-AGCAATTATCAACCA-ATGATA-ATAGT----GA---TT---CTG---TTACA------AGGAGGAAGA-AATCGAGCCTAGCTTGTTTTAAAGGGATTTTCCTTCTCCATGTATAACGCCTATT----ATCCGGATTGAATTCTCTACATGGGTCA-ACTAAATTA-TAT--Tataatca
gi|15 : ccttttatacaaggcttaagtgtATTGTTTACATCTCTTAATAGCCTATTATT-TGACTTCCATAATGGTTTAT----AC-TTAACAAAAT----GGT-TAAAATTA-TATTTAAATATGATAATTGAATAGC----CTAGT---T-ATAAC---------TGGCTTTGATA-T-T-A-TATTAGCT---TA-GTGGTG-CAAGT----AGGCTTT---CAG---A---A------ATGAGAAGAACAATCTAATGTTGCTTGCTTGAAAGGTATTTTCTTTCCCCATGTATA---
gi|16 : TTTT-GCAATGA-TGCTAC-TACCATC---AGGCATTTCTGTTATGTTTAAGTTGC-AAAACATACTTTGAAGTTTTTTATTCATCATCAATAA--AATGAG---CGCGTGATCG--TAT--GAAATC--A-CCGTT---C-ATTTTCTTTTTGCGT-A-A-AGCTATG-AG-TGATTCTT-TA---A---AT-T-T-------A-TTC------------A---C-----ATT-----------GT
gi|18 : ttttagcttgttttgatatattcacttgAAAAA-CACAAATCGCTATTCCCTTGGACATATACATGTTTCTCC-GGTACCTCA-G--TCAAATGTGTGTCTTGCAGACAAT-TATATGACA--TATTATCT---------TAAAATACATC--TATTGGTTT--TCT--GTT--ATCA--TTAAGGTACAAGCATTTAAGGGATAAAtt
gi|19 : aaaaatgAAAT----CGA-TAAAATTG-TATTTAAT-GTTATCACGGAATGATCAGGCGGATTCCTGGTGACAGTACTTTATAGATGCAACA-A-G-A-CAggttt
gi|2 : gtatttccgtcatagttaacagcgcactCTCTTAGCGTTACTGCAGACTCTTCAATTGAT-AA--AATACCTTCT-A-T-AGAGTTT---GATCCAACCGTTG---TAAG----TTTTGGTGT---ATTT--A--ATCCTACTTA---T--T--ATTTTTC--TAAATGTATATCT--TCTA--GT--TGAT--TGTCTTTA---TTTGAATATA-TTTTTTTATAAAA-T-T--CTTT-GATTCTGTT-------AAAATTTG---GAATTGA-TCTTT--AATCAT-G-TCG-CCATTGTGT---TTT--TATAGTTTA-GGGATTA-GTTTAGATGAAA-A---A-----TTATGTTTC-TCTAAATTAC-AAAA-ATATTTTGAAGTTTTTTCCCCATCTTCTATGA--TTTCAG---CTCGCCATCT--TAC--TAAATG--A-CC-CTG--C-ATTTTGTCTTTTCTT-A-A-CATT-TG-AAGTCAATGTT-TA---AGTATT-T-C-CATTG-A-CTGGATTTTTTTCAGA---TGAGAGATT-----------GT-----GTTCGAG-TAATTC-----AAT------TT----A-TTA---------ATTTT-----------AT---TA-AT------TA--------TTTT--TCT---C-T-ATTA--TC---TT---TTTT----TTTTG-T-AACTTGAATATGATATAAATTTCCCTCTCAATTCCATGAGCAATGTTTCTAGGAATAACTGGTCA-TTTATTACGAATTGT-ATTTTATTATTTG-GTATATCAT-TTA--TGT--TTT-----CTGT---GTTATATACTGACACTGCA-TATTGTTGTTTGATTTCGTCTATTT-TTTCATTGATAGTTTTTAAATATTCAATATCACTAAGAAGGGAATTGCTGTG-TTTCCATAATGGTTTACC---AGGTA--CAAAAT----CAG-TAAAATCTATATTTAAT-ATTATCATTGAATGGT----CAGGT--CT-GTAGC---------TAGATTCAATAGT-G---CAATTACT---TA-TAGATG-GGAGA----AG---------TG---T---AACAGATACTAGAAAAA-AATCAAGTCGTGCTTGTTGTAAAGGTCTTTATCGCCTCCATGTATA---TCTTTTCAG-TTCTGGATGTAGTTCTCGAAAATGATCT-ATCGGGTTA-TTT--TGAACCATTAT----TTCTA--ATACTCTTTCTCAA-GCGTTCTTATTGTTTACATGTTTA---TAGTTGAAGTAATCAAGCGTTCGATCTAAA--ACTAAAT-T-AAAATCTCCAC-----ACA--TGA-CAATA-G------CA-TTAT-TATTTTATTG-TTCAGTTTT----AA----------GT--ACAAGA------TTAC-T-A-AAAAAAGA--CGGT--G--AA-TCATTATTG---GGACCATAAAGGGTTACAAGTGTAAACCTGTTGTTA-TTT--A-CAGTTAAATCTGCAATGATAAAATTACCC-------TCACTA---TCCGA--AATGTGACTTTGTATTTTATAGGCTACGCTTTTGCTAAATAATTAA--GC-AACC-CCTCG-GGATGGGGGAC--AACCAGAACAAAACA-AACAA-TCATTTCCCCATTGCGTACGAATAAACTGTTCA--GTAGTTTGTG--TAGAATGAATGTCCTGAAGGCAATACACATGACATTTTTTGGCTTTTAGATAGTTAAATAAATC--AATT-CTTTTCTCTG-G-TGAACTA-----AGACCTTGGCAATTAACTGACAATATcctgtagcacattcactgtgaaaaaaa
gi|20 : tgTTG-G--TATAATGGCAATCCTGCAGATAAAAAAGGTGACACTGTTTCGATTTTAGATAATTGAACACATCGTAATG-CTTT--TCTA-Gctatatatctgtcat
gi|21 : GAAAAC-AATCTAATGTTGCTTGCTTGAGAGGTATTTTCTTTCTCCATGTATA---agagtcttattcctgacagttatctgacataatatttttaccggtcatt
gi|3 : ccnnnnnnnnnnagAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-CC--TCT---GATTCTTCAGTTG---TAAG----TTAAAGTATCTCA-----A--A--TT-CTGAAAAT--T--CTTCATC--TAAATTAGTATCC--TAAA--GC--T--CTGCACCCCTT---CTTGAATATAAGTTTT-CACAAAT-T-G--TT---GTTTTTTTTTGTGTGTAAAATTTC---TGCCTGA-TCTGT--TT---TA---TT-TTAACATCTGATTTT--TCAATTTT--GGAATCA-TTTTAC-TGCTTTA---G-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAG-TTTTTTTCCATCCTCTATAA--ACTGAG---CTATTGATCT--AAC--GAGGTA--G-CCGTT---C-ATCTTATGTTTGCGT-A-TTAATGATA-AAT-CATGTTT-TA---G---TTGT-T-C-----A-T--G-------TC-GA---T-----GTTTATGCTCTGGGATAAG--GTT-------ATGT-----TCC------TT------TTT---T-TT--ATTTC-----------AC---AT-AT-------AAT----T-TCAT--TTT---C-TTGCAA--TTCAATT---TTTT----TTGTA-A-A--TAGAGTATGAAATAGAATGTCCTCTTAATTCCATAAACAATGTTTCTAAAAATAGCTGATCG-TTAA-------CTGTTAATTTGTTATTTG-GATTATTGT--CT-ATAT--TTT-----CAGT---ATTATAGACTGGTAAAGCG-TATT------TAATTTCCTTTATTT-TATTATTTATTGTC---AAATAGTCTATATCACTTAATAGAGAATTATTATG-TTTCCATAAGGGCTTACCTCTAA-----CAAAAT-----GTGTAAAATAACAATTTAAA-TTTATAATAGAATGGT----CTGAC--CT-GTAAC---------TAGCGTCAAC--T-GTA-CATTTTTC---TA-CTGATGCAAGAA----GATT-TT---CTG---T---A------ACTAAAAAGA------AGTCTTGCCTGCTTAAATAACGTTTTCTTACATCATGGATA---TCTTTTTAA-ATCTGGATACAATTTTCTAAAGGGGTCT-ATAAGATTA-TAGGATGATT--TTA------TCTAAAGTATCTTTTCCC-A-GGA--------GT------TTTTA---TAGTTGTACTTATCTAATTTGGGGTCCTGA--ACCAAGT-T-AAAATCGCCTA-----ATA--ATACC-ATA-------TCA-TTAC-T-TTTTACAGTTTCTGCTGT----CA----------TC--ATA--A------TC-C-TAT-AAAAAAAATCTGGA--G--AG-TCAGTATTT---GGCCGATATAAAG-AATGGGAGTTAATC---TCTTA-TTCTAAACTGTTATATCAACTGTTATTCAATTCCCC-------TCTGGG---TCAGA--TATATAATTATGAACCGTATATTCTAAGCCTTTACTAAATAA--AATTGCTAACA--CTCGGGCAT--TTGATTTTCCA-GAACTAAATA-AAT-A-TCATTTCCCAATTCTGTGCGGATGCGATTTTCA--GTAT-TTG-GTATAGAATGAAAATCTTTTAAACAATATATATGACACTTCTTCGATTTTACATAATTGAAAACATCT-AAAT-GCTT--TTTA-GCTGAACCA-----AGGCCCTGACAATTAACTGACAGAAa
gi|4 : ttagataacgacT-TCCAAATTGC-AAAA-GAAATTTACTGGTTTTTCCCCATTTTCAATCC--ACTGAG---CTCGTGATCT--TGT--AA--TACAG-CC-TT---TTAATTTATCTTTCC-T-A-T-ACATATCTAATTCAACCTT-TA---A---TG-TGT-C--TA-G-TTCT-------TC-TA---T-----ATT-----------TTGAT--CATT----TAATGA-----ATT------TTCA-AA-TTC---TTCT--ATTTT------------T---TT-ATGAATAACAAT----T-TCCC--TTT-----T-GTCT--TT---TT---CTTT----TTTTATATAACTACTATATGATATAGTTTTGCCTCTGATTTCCATTAATAATGTCTCTAGAAAGAGTTGGTCA-TTAATTATGAACTGT-AATTCAGAGTTTG-GAATATTAC--CA-ATAT--TGT-----CTAT---ATTATATATTGGTA-CACAGTATTGCTTTTTTATTTTTGAAATTG-TTTCATTTATTATATTTAAATAGTTTATGTCAGTCAATAATGAATTATTGAA-TTTCCAAAGTCCCTTCCC---ATGAT--CTATGT----TAT-TTAGGTTCAGACTGAGACATT-TTATTGAATGAT----CGGAT--TT-GTAAC---------TGGGTTCAATA-A-A-A-CATTTCCT---GACGTG-TG-ATAAT----AA---ATCGCCTG---T---C------ACTAGAAAGA-AGTCTAATCTTGCTTGTTGTATTGGTTTTTTTCTTCTCCAAGTGTA---TCTTTTTAA-ATTGGGATTATTTTCTCTGAATGGGTCT-AAC-AATTG-TTTA-TCATTTATAAT----TTGTAAAAGCATATTTCT--A-GCATTTTTATTGTTCATATTTTTA---TAATTATAATAGTCTAAAACAGGATCTTGA--ACAAGAT-T-AAAATCACTACACCAAATA--AAA---GTG-------TCATTTCC-TATTTT-C---TCCATCTCT----TG----------T---AAAACA------TT-C-T-T-ATAAAACA--TAGGTTG--A--TCTGTATTA---GGTCCGTATATTGTAGCAAGTGTTAACC-GTTTTGA-TTC--AAGTAATAAATCCAGAGCTAAAAAATTACCA-------TCCCTG---TCTTT--CATCT---CATGTACTTTGTATTCTACATTTTTACTAAATAA--AATCGC-AACA-CCCCTCAAAT--TTAACCTTGCT-GAACTAAAGT-AACAG-TTACTGTTCGATTGTGTATATATAAATTTTTGT-TGTTCTTCT-G--TAAAATGTGTGTCTTGTAAACAGTAAATATGGTACCTTTTTTCCTTTAAGTACTGAAATATATC--AAGG-CATT--TCTG-ATTG--CCA--TGAAGGCCACGGCAATTCAATGATAAAATgttttacttcagtca
gi|5 : ttATCCATTTTTGTATGGA---TT-C-T-C--CA-AATTTA-------AA-AA---------AGC-----------GTAGA--GTCT----TTCTTT-----TGTAAGAATTTCT-AAATTA---T-TT--ATTTT------------T---TC-AA------TAAG----T-TCTT--TTT---C-T-GT--------------TTTT----TTTTA-T-AACTTGCATATGAAATTGATTTTCCTCGTAACTCCATCATTAAGATTTCAAGAAATAACTGGTCA-TTAATAACAAATTGA-ATATCTTCATTTG-GGATGTCAG-TTA-A-AT--TTT-----CTGT---ATAATAAACAGGTAAACAA-TACTGCTTATTTATTTCATCTATTT-TGTCATTGATTATGGATAAATACTCCCTATCATATAGAAGAGAGTTGTTGTG-CTTCCATAATCCCGTACC---ATGTT--GTAACT----CCT-TTAAACAAAGTTTTAGA-ATAACTATAGAATGGT----CAGAT--AT-ATAAC---------TAGATTGAATG-TCGCA-CAT---CT---TA-AT-AT--ATGGTAAAAAA---TC---ATAAGTT---A------ACAAGAAA-A-AATCAAGCCTGGCT--TTTTAgtttatgtc
gi|5 : ttCTTTTTAT-ATCTGGATAAAATTCTCTAAAGGGATCTTAT--AATTG-TTTA-TCATTTATAAT----GTTTAGCAGGGTATCTCTT---GCTTTCTTGTTATTTATTGTTTTG---TAGTTATTATAATCTA--TTGAAGGATTAAGTACAATAT-T-AAAATCACCAC-----ATA--TCA-T-GTA-GGAGT-TAT-TTCC-CATGTCAT---TGATAGTTT----TA--------------AAAATA------TT-T-T-G-ATAAAAGC--TAGG--TTCA--TCTTTATTT---GGTCTATATACAGTAACAAGTGTGAAAC-GTTTTTA-TTA--AACTGTCATATCTAATGCTAAAAAAT-GTCCATATTAATCATGGATTTCAT-----------TATGTACTTTGCAATCAAAGTTTTTGTTAAATAA--TATAGC-AACA-CCTCTAGAAT--TTGACTTGGAA-AAACTAAAAT-AACAA-TTATCATTCCATTGGGCATACATAAATGTCTTC-TGTGACTCA-G--TAAAATGTGTGTCTTGCAAACAATTTATATGGCATTTCTTATTCTGTAGGTATTGAAATACATC--TACT-CTTT--TTCT-GTT--ACCA--TACAGGCCGCAGCAGTTTAGGGACAAAAtatctggataaaattctctaaagggatcttataattgtttatcatttataatgtttagcagggtatctcttgctttcttgttatttattgttttgtagttattataatctattgaaggattaagtacaatattaaaatcaccacatatcatgtaggagttatttcccatgtcattgatagttttaaaaatattttgataaaagctaggttcatctttatttggtctatatacagtaacaagtgtgaaacgtttttattaaactgtcatatctaatgctaaaaaatgtccatattaatcatggatttcattatgtactttgcaatcaaagtttttgttaaataatatagcaacacctctagaatttgacttggaaaaactaaaataacaattatcattccattgggcatacataaatgtcttctgtgactcagtaaaatgtgtgtcttgcaaacaatttatatggcatttcttattctgtaggtattgaaatacatctactctttttctgttaccatacaggccgcagcagtttagggacaaaagttttatat
gi|6 : ttatccatttttgtatggattctccaaatttaaaaaagcgtagagtctttcttttgtaagaatttctaaattatttattttttcaataagttctttttctgtttttttttataacttgcatatgaaattgattttcctcgtaactccatcattaagatttcaagaaataactggtcattaataacaaattgaatatcttcatttgggatgtcagttaaattttctgtataataaacaggtaaacaatactgcttatttatttcatctattttgtcattgattatggataaatactccctatcatatagaagagagttgttgtgcttccataatcccgtaccatgttgtaactcctttaaacaaagttttagaataactatagaatggtcagatatataactagattgaatgtcgcacatcttaatatatggtaaaaaatcataagttaacaagaaaaaatcaagcctggCTTTAAGCCTAATTGAAGCCTGGTCAAAAG-T-AATTAA-ACCATCTTA-A-T-AATTT---GACTCTACAGATG---TAAG----TAAAGGAATTTCATTTGTA--A--CG-TTTAAAAT--T----TCATTATTAAGTTTATGTCTATTGGA--GT--T--T--CATCTGTA---CTTGAATA-AAGTTGCTGATAAAA-G-A--ATGA-GCTTCTTTA-------AGAATACC---TCTTTGA-TTGGT--AA-AATAG-CTT-CCATC-CCT---TTT--TCAGGTTTT-GGTATTAGTTTTAA-TAAAATATTTA-----ATACGTGAT-TCAAATTTAC-GAAA-TCAATTTGAAGATTTGTCATCCTCTTCAATAA--AAGTTG---CCCTTGATTC--TAA--CA--TA-------TT---C-A----A--------------------A-AGCTCATTTTTGCA---A---TT-T-T-C--TC-A-TTGG-------CC-GA---G-----ATA-----------GTCAG--GTTT----TGATTT-----TAT------TTCT-AG---------CT--GTTCT-----------AT---TA-AT------CAAA----TATCTTCCTTA---C-T-GTCA--AT---GT---CTCT----TTTCA-A-AATTTTCATAAGATATTGACTTGCCTCTGGTTTCCATTAGTAGTGTTTCAATCAATAGC---------------------T-ATTTTATCATTTG-CAAT-TTGT-TTA-ATAT--TATTGAAGTTATAAAGTTATATACGGGTAATATA-TATTGTACCTTTA-------TATTT-TATCAGTTATTATATTTAAGTAGT-TATATCATTTAAAATACTGTTATTGTG-TTTCCAGAGACCTTTACC---AGGTT--CAGAAT----TGT-TAAAAGAAAT-TTTAAA-ATAACCATTGAAT---------GAT--CT-GTAAC---------TAGAgttttatat
gi|7 : TTTTTTATAAAA-GTG--TTCA-TTTTCTTTT-------AATATATTACATATC-GA-TCATT--AC-GATTGAC---CCATCTGGT---GTT--TGCATTTTCAGGCATAA-CTTTGT-TTAGATA---A-----TTATGTGAT-TCTAAAGCACTAAAA-GTATTATATTGGTTTTTCGCCATCTGTAGTATTTACT--G---CCCTAGATT-----C--AA--TG--A-CC--------ACTCTAT-TTAATAT-A-T-GTTTGTA---TT--TCTTT-CA---A---TT---------------------------GA---C-----A-------------GTAAATTGTTT----CTATTTCTT--TTT------TTCTGAA-CTAAGAT-C---ATTATCAAAGCTGGAAATGTGTT-AT------TAAAATAAT-TATT--TTT---C-----CA--TG---TT---TCTT----TT------AGCTTGAAAATTAAATAGATTTCCCCTCAATTTCCAACATAAGTGTTTCTAAAAACAGCAGGTCA-TTAAAGGTAAACTGA-ATTTCACTGTCTGTG---ATTGTCTCC-ATGT--TAT-----CTTT---GTCATAAACTGAAAGAGCA-TGGTGTTGTTTTACATCTT-TATTTCTTTCCTTAATAGTCTCTGAATA
gi|8 : AACGAAAGTGAAATTTGTTCATATG-TCAA--AATACCTTCT-A-A-TAAATTT---GATTCTTCAGTTG---TAAG----TTTAGGTATCTCA-----A--A--TT-CTGAAAAT--T--CTTCATC--TAAATTAATATC--TTCAA--GTACT--G--CATCCCTA---CTTGAATATAAG-TTTTCATAAAATT-G--TTTG-GTTTCTTGT-------AAAATTTC---TGCCTGA-TCTGT---T-ATTAT-TTTACCATCTGAT---TTT--TCAATTTTT-GGAATAA-TTTTAC-TGCTAAA---A-----TTATACGAC-TCTAAGCTAC-AGAA-ATATTTTGAAGGTTTTTCTCCGTCTTCTATAC--ACTGAG---CTCTTGATCTAATAA--GG--TA--G-CCATT---C-ATCTTATGTTTACGT-ACT-AATGAT--AACTCATGTTT-TA---G---TT-G-T-T--CA-A-GTCG-------TT-G------------T-----------GTATG--CTCTGGGATAAGGT-----TATG-----TTCC-AATTTT---T-TT--ATTTC-----------AC---AT-A-------TAAT----T-TCAT--TTT---CTT-GTGA--TTCA-TTTAATTTT----TTTTA-T-AACTAGAGTATGAAATtggtaaatctttgaatagaatgttttatttctacatggattt
gi|9 : gat-T-AAGTAATGTTTTCT-T-C-TTAATTTTGTGAATC----ATTG---TAAGATAATTTTGGCACATCA-----A--A--CT-CTTTTAAT--T--CTTTTTC--CAGATCAATATCTATCTGCTCGT--T--T----TCACGA---CAGGAATATAGATTTTT-ATAAAA-ACA--CATG-GTTTCTTTT-------AAAATATC---AGTCTGATTTTGT--AC-TATAT-CAT--CATTGTCT---TTT--TCTATTTTT-GGTTTTG-TTTTGC-TGACATA---G-----TTATTTTTT-TCTAAATTAC-AGAA-GAAATTGGATGGTTTTTCACCTTCTTCAACCC--ATTTTG---CTTTTGATCT--TATCATA--TA--A-CCTTT---T-AGTTTTTTATTCCGT-A-G-AATATTC-AATTAATTTTT-TA---A---AA-T-G-T--TAGA-TTCC-------TC-TA---T-----ATT-----------TT------CTT----T-ATTTAGTGATTT------TTC--AA-TTT---T-ATCAATTGT------------T---TT-AA------TAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATACACTATTAGAGTGAACACGAATACACAGGTGGAAGAGAACATATAATACAAAGAACATTGCAAGCAAAAAAATAAACATTACAGAAATGTAATTCTGCATGTTTCTTGGAAAGTTCTAATTCATACATTTTGGCTAATATATATTGGAATAAAATAAAGTAATTAAAAAATAATTATATACATAT