lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111111111 1111111111111 11111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 000000000000000000000000000000000000 11 33333 1 11 11 8888888888888888888888888888888888888888888 1 333 22222 22 1 444444444444444444 1 444444444444444444 2222 4444444444444444444 11 1 222222 5555555 1 888888888888 22 555555555555555 1 1 1 3 1111 111 1 111 1 1 8888888888888888888888888888888888888888 4444444444 4444444444 1 33333333 6666666666666666666666666666666666666666666666 11 555555555555 4444444444 11 11 11 1 1 2222222222222 222 33333333333333333 111 99999999999999999999999999999999999999999999999999999999999 1111 22222 3333333333333333 6666666666666666666666666666666666666666666666666666666666666666666666666666 222222222 111111 7777777777 111111 222222222222222222222222 11111 111 1111
lowQualScore : 777777777777777777777777777777777777 6 22 55555 6 5 6 88 4 66 9999999999999999999999999999999999999999999 0 1 666 33333 0 0 44 5 0 0 888888888888888888 0 000000000000000000 1111 2222222222222222222 1 3 0 33 99 0 4 555555 3 4444444 5 55 6 777777777777 22 6 00 7 666666666666666 7 4 5 3 6 5 2 1 8888 6 3 0000 6 1 000 7 444 6 6 0 2 2 6 6 7777777777777777777777777777777777777777 6666666666 8 7 6 6666666666 3 8 00000000 1 3 7777777777777777777777777777777777777777777777 3 3 00 2 111111111111 1111111111 33 33 33 66 11 3 0 4444444444444 555 33 1 77 99 5 44444444444444444 3 0 7 3 3 5 6 333 55555555555555555555555555555555555555555555555555555555555 2222 00000 4444444444444444 7 3 4444444444444444444444444444444444444444444444444444444444444444444444444444 0 555555555 3 99 888 444444 3333333333 444444 888 333333333333333333333333 22222 000 3333
lowQualScore : .................................... . .. ..... . . . .. . .. ........................................... . . ... ..... . . .. . . . .................. . .................. .... ................... . . . .. .. . . ...... . ....... . .. . ............ .. . .. . ............... . . . . . . . . .... . . .... . . ... . ... . . . . . . . ........................................ .......... . . . .......... . . ........ . . .............................................. . . .. . ............ .......... .. .. .. .. .. . . ............. ... .. . .. .. . ................. . . . . . . . ... ........................................................... .... ..... ................ . . ............................................................................ . ......... . .. ... ...... .......... ...... ... ........................ ..... ... ....
lowQualScore : 000000000000000000000000000000000000 0 00 00000 0 0 0 00 0 55 5555555555555555555555555555555555555555555 5 0 777 55555 7 7 00 0 2 8 000000000000000000 0 555555555555555555 2222 2222222222222222222 2 2 8 88 88 0 0 000000 0 5555555 0 55 0 000000000000 00 7 77 3 000000000000000 3 0 0 7 0 0 3 7 3333 0 7 7777 7 0 333 0 777 0 0 7 5 5 0 7 3333333333333333333333333333333333333333 0000000000 3 3 7 7777777777 3 3 00000000 0 7 0000000000000000000000000000000000000000000000 2 2 22 5 222222222222 2222222222 88 88 88 88 00 8 0 5555555555555 888 88 8 33 22 2 44444444444444444 6 1 4 2 6 0 0 888 66666666666666666666666666666666666666666666666666666666666 1111 33333 3333333333333333 3 9 2222222222222222222222222222222222222222222222222222222222222222222222222222 1 555555555 6 11 888 444444 8888888888 444444 888 111111111111111111111111 55555 000 3333
consensus : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTTCGACTATGCNTGCTCNTTCCGGTACTCCGNNAAGTTGNNNAAAANTTTGAAAANTACGCTTCAAACTACNCAGAATAAG--ATTCATACGNTTTATTCTCAACTTGGATAA-ATGTCTCATATTGGACCGGAACATTTTAAGTCTTTAAACCGGTTACCAGTCCCAANA--AA---GA--GTTGATC-AGATTANTC--TG---T--CAT-TGTTCA----AAACAT--TAAGTTGGGTNCTNCTCCGGATTATCTA--GGCGA-ACATTTTGNGCCACNTNATCNCTGATATACACATGGTCGCTGTACCCGATNNAGCATGACTTTTTTCGCTCGATTTCTCCCCAATTCCCC-TTTCAGTTTTACCG---TCATAGGTAG--GACGGNTTGCTTTACCAAAAGTANGCAGTTTCGGGGAAA-AGTAATTTTCATACCGAGGT-TTGTTCTATGGAAAAGTCTTCCTCAGTATATTAGAAATATCGATAGGCCAGATA-TTTCAAGAATGCTGTCAAGAATCACGTGTTNGCCATNTGACTCTCCATTCGATATAACATTGATCTCGGAGGTTTTTATT--GT-TCC------CANTTTTTTT-TT-GNT---GGTAC-TTTTTAATTTCC-GT-AGTT--TTTTATTAATATAAGNATA-----TT---AT-GCATGAATTGG-TA--ATATATAATCTGGNAC---TCAC--TG-TGATAA-AACA-CTTTGTA--------GGTNTT-TTATTATG-ATTATTGT------------AAAGTGAC---------GTTAA--AGT--TA--GGTCGTGTCATATAACA-TAT-T-----------TGTTTAAA--TATAGTACGTAATAC-TA--ATGAGATA---A---TG-AC-ATAGTACGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTG--------TG-T--A-T---------A----------------T---------------TACTGTGATATA----TAT-TA--AAAAT--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACCGCAC---GACATAAGAGAAAGNCGGCANCNNNNNNGNGNGNNNTCCTNNNTNTTGNNTCGCNNNCCGNNACCTCGTGATATGTGTGTATCGTTATGA-CANTTTC-TATATCATTGTTGTTATATCGTTCATGC---A------TCATGTTG-----TG------CCATGC---TT--------TGT------A------TG-----TA---TTACCA--AAATAAAT
Reference ( gi|1 ) : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGTATTCCACT---TTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA---ATTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAAAA--AA---GA--GTTGATC-AGATTAATC--TA---T--CA--TGTTCA----AAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTACTG---TCATAGATAAAAGACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAATAATTTCAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCT--GATCAGTTTTTTTATTAAGTAGCGGTACCTTTTTAATTTCT-GT-AGTTT-TTTTTTTAATATAAGCATA-----TT---AT-GCTTGAATTGG-TA--TTCTATAATCTAGCAC---TAAC--TA-TGATAAAAACATCTTTGTG--------GGCCCT-TTATTATG-ATTATTGT------------AAAGTGAC---------ATTAA--AGT--TA--GGTCGTGTCATAAAACA-TATATACGGTA----GTGTTTAAG--TATAGTACGTAATAC-CA--ATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTG--------TG----------------A----------------T---------------TACTGTGATATA----TAT-TC--AAAAC--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACCACA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGA-CAGTTTG-TATATTATTGTTGTTATATCGCCCATGC---A------TCA----------TG------CCATGC---TT--------TGT------A------TG-----TA---TTACAA--AAATAAAT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGTACTCAGGA---TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAG--ATT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTA---CACTAAGTTGACAAAAAA----AAAATTATA---TA----ACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGTC---GAC--AA---GATGGTTCAACAAAAATAATG--TG---T--CAT-TTTTTA----AAA-ATCGCAAATAATATT--GCTCCGGAT--TCTAAGGGCGATACATTTtca
gi|8 : AAAATCA---ACTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-ACA--AA---GA--GATGATC-AGATTACTCTTTG---T--CA--TGTACA----AAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTAATG---------------GACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAATTTCAAGAATACTGTCAAGAATCACGTGT
gi|2 : TTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATC-AGATTTCTC--TT---TGCCA--TGTTCA----AAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTACCT---TTATAGGTAATGGACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---ATA--TTCAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT------------ATTTTTTT-TTAATTTGAGG----TTTTCCATGTCCAAT-AGTTA-TTTTAATAA-ATACCGATACCTTTTT---AT-GCATGAATTGG-TA--ATATATCATCTAGTAC---TCAC--TG-TGATAAAGA---TTTTGTG--------TGTGTT-TT-TTATG-GTTAAAGT------------AAAGTGAC---------TTTAA--AGT--TA--AGTCGTGTCATATAACA-TATAT-----------TGTTTAAAC-TATA-T-----ATAT-CA--ATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTG--------TGATATAATGTTTAACTTA----------------T---------------TACTATGATATA----TATATTAAAAAAT--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAA-CTTTTTT-TATATAAGTGTTGCTTTATTGTTCATGCATAA------TCACGTTGAGCATTG------CCATGCATATT--------T-T------A------TG-----TA---
gi|11 : acgtCATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAACA--AAT--GT--GTTGATC-AGATT-GTC--TATTGT--CATGTGTTTAGGATAAA-A----AA--TGGGTT-AGCCCCTGATTATATG--GGAGA-ACCTTTTcatttaaactaccaca
gi|17 : TCTCCTCAATGCCCC---TCACTTTTACTGTTCTCATAGATAGATG-TGGATTGTTTTactcttcagaacacttttcactc
gi|4 : gacaattgaGATTTTTTTACCAAAAGTAGGCAGTTTCGG-GAAAAACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGATCTTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTCTT----TTAGTTT---------GAACTGGTACTTTTTTATTTTCT-GT-A-----TTTTATTAATATAAGCCTA-----GT---AT-GCATGAATTGG-TA--ATATATAATCTGGCAC---TCAA--TG-TGAT---AATAT-TTTGGA--------GGTATT-TTATTATA-ATTATTGT------------AAAGTGAC---------ATTAA--AGT--TA--GGT------ATATAACT-TAT-T-----------TTTTTAAA--TACAGTACGTAATAC-TA--AT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTG--------TG----------------ATATACTGTTTAAATTGT---------------TACTGTGATACA----TAT-TA--AAAACT-GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACCGCA------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTA-TAATTTC-TATATCATTGTTGTTATATCGCTCATGT---A------TCATCT-------TT------CCATAC---TT--------TGT------A------TG-----TACATTTATTACCAAATAAA
gi|5 : acGTTTTATT-----TCCAAAGAACATTTATTTTATTTGAT-----TAT-TTGTTAATTACT-TTTCGTTTATTTCTTCGTTATTAGAATA-----TTTTGATAGTTTAAATTGAATGATTTTTGTAAGCTGAAACAAATAACGATACTGAAAACAACAGCTTTATATTTCAAAAGGTCATGTTATT-TGTATTATTGTTTGTATCTCCCAGAAATGACTCCGGCACTACTGACCAGTATTACTGTTTATGTTATTGGTCAGTAT-TACAGTATAACGTGTCTCAGATTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATATACTGCTTAACGC--------A----------------T---------------TACTGTGATATA----TAT-CA--AAAGT--AA-TTA-------ATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACCGCA------------------ATGGCAATAAGAGAAAAAACATTTTTCCTTTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTCCT-TTTATCATTGTTATCATATCGATCATGC---AAAATGTTGT----------TG------TCATGC---TT--------TGT------A------TGTACATTA---TTACCA--AAATGAAT
gi|6 : ACTATT-ACTATT--------------AAAGTGAC---------GTTAA--AGT--TA--GGTCGTGCCATACAACA-TAT-------------TGTTTAAA--TATAGTACGTAATAC-TA--ATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTG--------TG----------------ATACAATGTTTAATTTTT---------------TACTGTGATATA----TAT-TA--AAAAT--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCCGCA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGA-CTATTTC-TATATTAATGTTGTTATATCATTTATGC---A------TCA----------TGTTGTCACCATGC---AT--------TGTCTTTACA------TT-----TA---TTACCA--AActatc
gi|9 : TAGTATGTTATAC-TA--ATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTG--------TGATATAATGTTTAACTTA----------------T---------------TACTGTGATATA----TAT-TC--AGAGT--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCA
gi|3 : ATGTAATAC-TA--AGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTG--------TG----------------A----------------TATACTGTTTACCTATCACTGTGATATA----TAT--C--ATAACT-AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATA-TCAAAGACCACACTT-GACATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGT---A-CA-TTTGCTATATCATTGTTGTTATATCGTCCATGT---A------GCATGTTAT----TG------CTATGC---TT--------TGT------A------TG-----Tgaatggaaataagaaaaaagcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtattatgattcttctactatgtgttgattatatttttatgctgttgtagttgtggt
gi|16 : aAGATAGCAA---TG-AT-AT-ACATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACccagctattaccgaatagatataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|7 : cgaaatatgtaaTATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAAT--CTGATATAC--TGGCTACTT---------A----------------T---------------TACTGTGATATAATAATAT-TA--AAAATAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACCACAN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGG-TAGTTTC-TATATCATTGTTGGTATATCGTTCATTT---A------TCATGTTGT----TG------TCGTGC---TTGATATATATAT------A------TT-----TA---TTACCA--AAATAAAT
gi|14 : atagctttcattttttattaatggtctatggaattataataaacttatTAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTG--------TA----------------A----------------T---------------atatct
gi|15 : tgttaTGTGTGTAGTGTTATGA-------------TTATTTCTGTTATATCATTCATGC---A------TCA----------TG------C--TG----TT--------TCT------A------TG-----TG----TACAataatggtgaacgtcccttttctacttggtagtatgt
gi|13 : TTTA-TATATCATTGTTGTTCTTTCGTTCATGC---A------TCATATTGC----TG------TCATGT---TC--------TGT------GTGTAATTG-----TA---TTACCA--AATTAAtttattaacaaagtacatc
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 222 22 6666666 111 11 11 2222 22222222222 1 11 222222 111 111111 11 2 555555 555555 2 1 44444444444444444 1 2222 111 11 999999999999999999999999999999999 1 2 1111 1 33333 4444444 11 111 44444444444 1 2222222 111 55555555555555555555555555555555555555 1111 11111 77777777777777777777777777777777777777777777777777777777777777777777 333333 11111111 444444444444444444444
lowQualScore : 5 111 2 3 77 444 3 4 6 7 1 0 1 0 2222222 333 222 1 55 1 6 33 7 1 1111 4 33333333333 6 11 8 77 777777 999 888888 0 1 1 77 4 0 11 6 8 1 77 1 3 1 222222 0 22 0 888888 3 0 3 7 11111111111111111 1 2 1 0 0 3 2 0 2 4444 3 4 2 2 0 777 33 2 1 1 0 3 0 0 666666666666666666666666666666666 3 7 6 8888 3 7 1 33333 0 1 1111111 1 1 3 0 2 1 11 8 444 11111111111 8 8 0 66 0 44 0000000 5 5 4 3 2 2 1 2 4 222 8 66666666666666666666666666666666666666 0000 5 66 5 66 5 44444 3 5 88888888888888888888888888888888888888888888888888888888888888888888 00 00 00 2 77 4 777 333333 44 777 66666666 444444444444444444444 3
lowQualScore : . ... . . .. ... . . . . . . . . ....... ... ... . .. . . .. . . .... . ........... . .. . .. ...... ... ...... . . . .. . . .. . . . .. . . . ...... . .. . ...... . . . . ................. . . . . . . . . . .... . . . . . ... .. . . . . . . . ................................. . . . .... . . . ..... . . ....... . . . . . . .. . ... ........... . . . .. . .. ....... . . . . . . . . . ... . ...................................... .... . .. . .. . ..... . . .................................................................... .. .. .. . .. . ... ...... .. ... ........ ..................... .
lowQualScore : 5 555 5 0 55 555 0 0 7 3 0 7 0 7 7777777 000 333 0 77 0 7 88 3 0 8888 6 22222222222 0 00 0 00 000000 444 222222 8 4 0 00 6 8 00 4 0 0 77 0 7 0 333333 7 00 7 333333 3 7 3 3 00000000000000000 0 5 0 8 0 0 5 2 5 0000 0 0 0 5 2 000 22 0 0 0 7 7 7 7 777777777777777777777777777777777 3 7 7 0000 3 3 0 33333 7 0 7777777 0 0 2 2 5 4 00 0 000 88888888888 0 0 1 99 0 66 5555555 0 0 1 4 0 0 9 2 4 222 9 99999999999999999999999999999999999999 6666 0 99 0 99 0 22222 1 0 44444444444444444444444444444444444444444444444444444444444444444444 33 33 66 9 88 4 888 444444 66 888 11111111 222222222222222222222 2
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTC-G-T---TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGAT--TCATACGNTTTGTTCTCAACTTGGACAACA-TGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAACA----AA-GA--GTTGATC-AGATTANTCT--T--GTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCTAATTCCCC-TTTCAGTTTTACC-TCATAGGTA--G--GACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTT-GTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTT-CAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTC------A-TTTTTTT--T---TAN--CGGTAC-TTTTTNATTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CA-TTTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATA-----T--TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTG-TGA---------TA------------TA------------TTACTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GCA-C---GACA-TAAGAGAAAANCCGTANCNCTTTTGTGTGATATCCTAGATNTTGNNTCGCNNNCCGNNACCTCGTGATATGTGTGTATCGTTATGACNATTTCTAT-ATCATTGTTGTTATATCGTTCATGC---ATCATGTTGT----T-GCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTTCGACTATGCNTGCTCNTTCCGGTACTCCGNNAAGTTGNNNAAAANTTTGAAAANTACGCTTCAAACTACNCAGAATAAGAT--TCATACGNTTTATTCTCAACTTGGATAA-A-TGTCTCATATTGGACCGGAACATTTTAAGTCTTTAAACCGGTTACCAGTCCCAANA----AA-GA--GTTGATC-AGATTANTC---T--GTCAT-TGTTCAAAACAT--TAAGTTGGGTNCTNCTCCGGATTATCTA--GGCGA-ACATTTTGNGCCACNTNATCNCTGATATACACATGGTCGCTGTACCCGATNNAGCATGACTTTTTTCGCTCGATTTCTCCCCAATTCCCC-TTTCAGTTTTACCGTCATAGGTA--G--GACGGNTTGCTTTACCAAAAGTANGCAGTTTCGGGGAAA-AGTAATTTTCATACCGAGGT-TT-GTTCTATGGAAAAGTCTTCCTCAGTATATTAGAAATATCGATAGGCCAGAT-A-TTT-CAAGAATGCTGTCAAGAATCACGTGTTNGCCATNTGACTCTCCATTCGATATAACATTGATCTCGGAGGTTTTTATT--GTTCCC-----ANTTTTTTT--T---TGN--TGGTAC-TTTTTAATTTCC-GTAGTT-TTTTATT-AATATAAGNATA-----TTATGCATGAATTGGTAATATATAATCTGGNACTCACTGTGATAAAA-CA-CTTTGTAGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATAT------T--TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTACGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTG-TG----------TA------------TA------------TTACTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GCA-C---GACA-TAAGAGAAAGNCGGCANCNNNNNNGNGNGNNNTCCTNNNTNTTGNNTCGCNNNCCGNNACCTCGTGATATGTGTGTATCGTTATGACANTTTCTAT-ATCATTGTTGTTATATCGTTCATGC---ATCATGTTG-----T-GCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGTATTCCACT---TTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-AT--TCATACAATTTGTTCTCAACTTGGACAGCA-TGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAAAA----AA-GA--GTTGATC-AGATTAATC---T--ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTACTGTCATAGATA--AAAGACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTT-GTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTT-CAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAG--CGGTACCTTTTTAATTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAACATATATACGGTAGTGTTTAAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTG-TG-------------------------A------------TTACTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-ACA-----NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTTGTAT-ATTATTGTTGTTATATCGCCCATGC---ATCA----------T-GCCATGC---TT--------TGT------A------TG------TATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACAC---TAAGTTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-A-GGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--CGAC-----AA-GATGGTTCAACAAAAATAATG---T--GTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAACA----AATGT--GTTGATC-AGATT-GTCTATT--GTCATGTGTTTAGGATA---AAAAATGGGTTA-GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGTACTCAGGA---TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGAT--Tactcttcagaacacttttcactc
gi|13 : TATTTGTGTAATTTTAT------TTATAT-ATCATTGTTGTTCTTTCGTTCATGC---ATCATATTGC----T-GTCATGT---TC--------TGT------GTGTAATTG------TATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTG-TA-----------A------------TA------------TAATGGTGA
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTTCT------------GTTATATCATTCATGC---ATCATGCTGT----T-TCTATG----TG--------TAC------A------TT------TATTAACAAAGTACATacgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|2 : ACGTTTTGTTCTCAACTTGGATAA-AATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATC-AGATTTCTC---TTTGCCAT--GTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTACCTTTATAGGTAATG--GACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTT-GTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A-TT--CAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT---------ATTTTTTTT--T---AAT--TTGAGG-TTTTCCATGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--A-TTTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATA-----T--TGTTTAAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTG-TGA---------TATAATGTTTAACTTA------------TTACTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-ACA-CNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTTTTAT-ATAAGTGTTGCTTTATTGTTCATGCATAATCACGTTGAGCATT-GCCATGCATATT--------T-T------A------TG------TA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTG-TGATATACTGTTTACC----------TA------------TCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-ACA-CTT-GACA-TAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGT---ACATTTGCTAT-ATCATTGTTGTTATATCGTCCATGT---AGCATGTTAT----T-GCTATGC---TT--------TGT------A------TGTCCAGCTATTACC-GAATAGATcatttaaactaccaca
gi|4 : aACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGT-TTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-C-TTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTC--------TTTTAGT--T---TGAACTGGTAC-TTTTTTATTTTCTGTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TA-TTTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAACTTAT------T--TTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTG-TGA---------TA------------TACTGTTTAAATTGTTACTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GCA--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTTCTAT-ATCATTGTTGTTATATCGCTCATGT---ATCATCTT------T--CCATAC---TT--------TGT------A------TGTACATTTATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAACGTGT------C--T---CAGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTA----------TA------------TACTGCTTAACGCATTACTGTGATATA----TAT-C--AAAAG-T--AA-TTA-------ATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTCCTTTTATCATTGTTATCATATCGATCATGC---AAAATGTTGT----T-GTCATGC---TT--------TGT------A------TGTACAT-TATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAACATAT------T---GTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTG-TGA---------TA------------CAATGTTTAATTTTTTACTGTGATATA----TAT-T--AAAAA-T--GA-TTA-----------CATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GCA-----NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTTCTAT-ATTAATGTTGTTATATCATTTATGC---ATCATGTTG-----TCACCATGC---AT--------TGTCTTTACA------TT------TATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAAT--CTGATA----------TACTGGCTACT---TA------------TTACTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-ACA-N---NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTTCTAT-ATCATTGTTGGTATATCGTTCATTT---ATCATGTTGT----T-GTCGTGC---TTGATATATATAT------A------TT------TATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatAC--TCATACATTTTATTCTCAACTTGGATACCA-TGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-ACA----AA-GA--GATGATC-AGATTACTCTT-T--GTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA-----AT-------G--GACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA--------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTT-CAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTG-TGATATAATGTTTAACT---------TA------------TTACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGAA-TG--GAAA-TAAGAAAAAAGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GACAATTGATCTCCTCAATGCCCCTCACTTTTACTGTTCTCATAGATAGATGTGGATTGTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1 222 11 11 444444 11 11 11 222222 222 11 22 111 1 111 11 1 33333 333333 22 1 44444444444444444444444 1 3333 44444444444 66666666666666 1111 1 11 1111 1 33333 3333 1 11 111 444444444 1 2222222 1111 222222222222222222222222222222222222222 1111 111 4444444444444444444444444444444444444444444444444444444444444444444 11111111 444444444444444444444
lowQualScore : 5 111 2 1 77 1 1 2 1 6 7 1 0 88 888888 11 55 3 6 33 7 1 99 444444 3 222 11 8 77 77 0 999 3 222 5 1 444 0 11 6 8 6 3 33333 0 888888 00 3 0 3 3 44444444444444444444444 1 0 0 0 1 2 0 2 2 1 1 2 0 0000 1 0 0 6 22222222222 66666666666666 8888 1 3 44 8888 3 7 33333 6666 3 1 3 0 2 1 11 8 444 777777777 8 8 0 66 0 44 0000000 5 5 4 3 2 1 2 4 0000 999999999999999999999999999999999999999 0000 5 66 5 77777 2 111 3 5 5 2222222222222222222222222222222222222222222222222222222222222222222 00 00 00 0 00 22 666 777 99999 777 66666666 444444444444444444444 3
lowQualScore : . ... . . .. . . . . . . . . .. ...... .. .. . . .. . . .. ...... . ... .. . .. .. . ... . ... . . ... . .. . . . . ..... . ...... .. . . . . ....................... . . . . . . . . . . . . . .... . . . . ........... .............. .... . . .. .... . . ..... .... . . . . . . .. . ... ......... . . . .. . .. ....... . . . . . . . . .... ....................................... .... . .. . ..... . ... . . . ................................................................... .. .. .. . .. .. ... ... ..... ... ........ ..................... .
lowQualScore : 5 555 5 0 55 0 0 5 0 7 3 0 7 33 000000 00 77 7 7 88 3 0 55 444444 8 000 00 0 00 00 8 444 2 444 6 4 888 8 00 4 0 7 3 33333 7 333333 77 0 0 2 2 55555555555555555555555 4 2 8 0 0 5 2 5 5 0 0 5 2 2222 0 7 7 7 00000000000 33333333333333 0000 0 3 00 0000 3 3 33333 3333 3 0 2 2 5 4 00 0 000 000000000 0 0 1 99 0 66 5555555 0 0 1 4 0 9 2 4 4444 000000000000000000000000000000000000000 6666 0 99 0 00000 5 666 1 0 0 1111111111111111111111111111111111111111111111111111111111111111111 33 33 66 8 99 77 222 888 66666 888 11111111 222222222222222222222 2
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGT--ACTC--G--NTTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCC--AACAAA---GA--GTTGATC-AGATTANTCT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TCATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTC---AT---TTTTTTT------TAACT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATA------------TA-TG-TTAA-T--TT-----------ACTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGTGATATCCTAGATNTTGNNTCGCNNNCCGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TATATCATTGTTGTTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGT--ACTC--G--TTTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCC--AACAAA---GA--GTTGATC-AGATTANTC--TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCTAATTCCCC-TTTCAGTTTTAC----C-TCATAGGTA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTC---AT---TTTTTTT------TANC----GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATA------------TA------------TT-----------ACTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGTGATATCCTAGATNTTGNNTCGCNNNCCGNNACCTCGTGATATGTGTGTATCGTTATGACNATTT-C-TATATCATTGTTGTTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGT--ATTC--CACTTTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-A--TTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCC--AAAAAA---GA--GTTGATC-AGATTAATC--T-ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTAC----TGTCATAGATA--AAAG-ACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTTCAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAGC----GGTACCTTTTTAA-TTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAACATATATACGGTAGTGTTTAAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTGTG----------------A------------TT-----------ACTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-AC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTT-G-TATATTATTGTTGTTATATCGCCCATGC---ATCA----------TGCCATGC---TT--------TGT------A------TG------TATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACACTA--A--GTTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--C--GAC-AA---GATGGTTCAACAAAAATAAT---GTGTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--T--AACAAAT--GT--GTTGATC-AGATT-GTCTATTGTCATGTGTTTAGGATAA--AAAATGGGTTA--GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGT--ACTCAGG--ATTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGA--TTactcttcagaacacttttcactc
gi|13 : TATTTGTGTA--ATT----TTATTT-A-TATATCATTGTTGTTCTTTCGTTCATGC---ATCATATTG----CTGTCATGT---TC--------TGT------GTGTAATTG------TATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTGTAATA------------TA------------
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTT-C-T-----------GTTATATCATTCATGC---ATCATGCTG----TTTCTATG----TG--------TAC------A------TT------TATTAACAAAGTACATatggtgaacgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|17 : TCTCCTCAATGCCCC-T--CACTTTTACTGTTC-TCATAGATA--G--ATGTGGATTGTTTT
gi|2 : gacaattgaACGTTTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATC-AGATTTCTCT-TTGCCA--TGTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTAC----CTTTATAGGTAATG--G-ACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A--TTCAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT------AT---TTTTTTT------TAATTTGAGG----TTTTCCA-TGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--AT-TTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATAT-------TGTTTAAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTGTGATATAATGTTTAACTTA------------TT-----------ACTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-AC-ACNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTT-T-TATATAAGTGTTGCTTTATTGTTCATGCATAATCACGTTGAGCATTGCCATGCATATT--------T-T------A------TG------TA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTGTGATA------------TA------------CTGTTTACCTATCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-AC-ACTT-GAC-ATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGTA----CATTTGC-TATATCATTGTTGTTATATCGTCCATGT---AGCATGTTA----TTGCTATGC---TT--------TGT------A------TGTCCAGCTATTACC-GAATAGATcatttaaactaccaca
gi|4 : a-ACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-CTTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTC---TT---TTAGTTT------GAACT---GGTAC-TTTTTTATTTTCT-GTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TAT-TTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAACTTAT-T-------TTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTGTGATA------------TACTGTTTAAATTGTT-----------ACTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GC-A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTT-C-TATATCATTGTTGTTATATCGCTCATGT---ATCATCTT-----T--CCATAC---TT--------TGT------A------TGTACATTTATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAACGTGT-----------CTCAGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATA------------TACTGCTTAACGCATT-----------ACTGTGATATA----TAT-C--AAAAG-T--AA-TTA-------ATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTC-CTTTTATCATTGTTATCATATCGATCATGC---AAAATGTTG----TTGTCATGC---TT--------TGT------A------TGTACAT-TATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAACATAT---------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATA------------CAATGTTTAATTTTTT-----------ACTGTGATATA----TAT-T--AAAAA-T--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTT-C-TATATTAATGTTGTTATATCATTTATGC---ATCATGTTG----TCACCATGC---AT--------TGTCTTTACA------TT------TATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAA----TCTGATA------------TACTGGCTACTTA-TT-----------ACTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-AC-AN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTT-C-TATATCATTGTTGGTATATCGTTCATTT---ATCATGTTG----TTGTCGTGC---TTGATATATATAT------A------TT------TATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatA--CTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC---ACAAA---GA--GATGATC-AGATTACTCT-TTGTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA---------AT-------G--G-ACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTTCAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTGTGATA------------TAATGTTTAACTTATT-----------ACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGA-ATG--GAA-ATAAGAAAAAAGCC
Alignments
lowQualScore : 1 222 11 11 444444 11 11 11 11 11 222 11 11 111 1 111 11 1 33333 333333 22 1 4444444444 2222222 1 3333 55555555555 1 222 1 1 11 1111 1 33333 3333 1 11 111 444444444 1 2222222 1111 666666666666666666666 111 1111 111 7777777777777777777777777777777777777777777777777777777777777777777 11111111 444444444444444444444
lowQualScore : 5 111 2 1 77 1 1 2 1 6 7 1 0 88 111111 11 55 3 6 33 7 1 99 66 3 11 3 222 11 0 77 8 33 999 3 222 5 1 444 0 11 6 8 6 3 33333 0 888888 00 1 0 3 3 1111111111 3 0 3333333 1 0 0 0 1 2 0 2 2 1 1 2 0 0000 1 0 0 6 22222222222 3 3 333 3 1 3 44 8888 3 7 33333 6666 3 1 3 0 2 1 11 8 444 777777777 8 8 0 66 0 44 0000000 5 5 4 3 2 1 2 4 0000 111111111111111111111 66 777 0000 5 66 5 77777 2 111 3 5 5 4444444444444444444444444444444444444444444444444444444444444444444 00 00 00 4 11 444 4 3 0 4 777 8888 777 66666666 444444444444444444444 3
lowQualScore : . ... . . .. . . . . . . . . .. ...... .. .. . . .. . . .. .. . .. . ... .. . .. . .. ... . ... . . ... . .. . . . . ..... . ...... .. . . . . .......... . . ....... . . . . . . . . . . . . . .... . . . . ........... . . ... . . . .. .... . . ..... .... . . . . . . .. . ... ......... . . . .. . .. ....... . . . . . . . . .... ..................... .. ... .... . .. . ..... . ... . . . ................................................................... .. .. .. . .. ... . . . . ... .... ... ........ ..................... .
lowQualScore : 5 555 5 0 55 0 0 5 0 7 3 0 7 33 333333 00 77 7 7 88 3 0 55 44 8 00 8 000 00 8 00 0 66 444 2 444 6 4 888 8 00 4 0 7 3 33333 7 333333 77 0 0 2 2 2222222222 2 8 5555555 4 2 8 0 0 5 2 5 5 0 0 5 2 2222 0 7 7 7 77777777777 3 7 333 3 0 3 00 0000 3 3 33333 3333 3 0 2 2 5 4 00 0 000 000000000 0 0 1 99 0 66 5555555 0 0 1 4 0 9 2 4 4444 888888888888888888888 99 555 6666 0 99 0 00000 5 666 1 0 0 2222222222222222222222222222222222222222222222222222222222222222222 55 55 88 7 88 666 0 2 8 0 000 5555 888 11111111 222222222222222222222 2
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGT--ACTC--GA--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTC-------NTTTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATAT-A-T--G-TT--AA---C---T--TA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGT--ACTC--GN--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTC-------ATTTTTTT-TTAACT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATAT-A-T--G-TT--AA---T---T--TA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGTGATATCCTAGATNTTGNNTCGCNNNCCGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGT--ATTC--CACTTTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-A--TTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--AAAA---GA--GTTGATCAGATTAAT-CT---ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTAC----TGTC-ATAGATA--AAAG-ACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTTCAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAGCGGTACCTTTTTAA-TTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAACATATATACGGTAGTGTTTAAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTGTGA------------------------T--TA---CTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-AC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTT-G-TA-TATTATTGTTG-TTATATCGCCCATGC---ATCA----------TGCCATGC---TT--------TGT------A------TG------TATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACACTA--AG--TTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--CGA--C-AA---GATGGTTCAACAAA--AATAAT-GTGTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAA--CAAAT--GT--GTTGATCAGATT-GT-CTATTGTCATGTGTTTAGGATAA--AAAATGGGTTA--GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGT--ACTCAGGA--TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGA--TTactcttcagaacacttttcactc
gi|13 : TATTTGTGTA--ATT----TTATTT-A-TA-TATCATTGTTG-TTCTTTCGTTCATGC---ATCATATTG----CTGTCATGT---TC--------TGT------GTGTAATTG------TATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTGTAATAT-A-
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTT-C-T------------G-TTATATCATTCATGC---ATCATGCTG----TTTCTATG----TG--------TAC------A------TT------TATTAACAAAGTACATatggtgaacgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|17 : TCTCCTCAATGCCCC-T--CACTTTTACTGTTC-TC-ATAGATA--G--ATGTGGATTGTTTT
gi|2 : gacaattgaACGTTTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATCAGATTTCT-CT-TTGCCAT--GTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTAC----C-TTTATAGGTAATG--G-ACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A--TTCAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT----------ATTTTTTT-TTAATT---TGAGG-TTTTCCA-TGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--AT-TTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATAT-------TGTTTAAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTGTGATATAA-T--GTTT--AA---CTTAT--TA---CTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-AC-ACNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTT-T-TA-TATAAGTGTTG-CTTTATTGTTCATGCATAATCACGTTGAGCATTGCCATGCATATT--------T-T------A------TG------TA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTGTGATAT-ACT--G-TT--TA---C---C--TATCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-AC-ACTT-GAC-ATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGTA----CATTTGC-TA-TATCATTGTTG-TTATATCGTCCATGT---AGCATGTTA----TTGCTATGC---TT--------TGT------A------TGTCCAGCTATTACC-GAATAGATcatttaaactaccaca
gi|4 : a-ACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-CTTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTC-------TTTTAGTT-TGAACT---GGTAC-TTTTTTATTTTCT-GTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TAT-TTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAACTTAT-T-------TTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTGTGATAT-ACT--G-TTTAAA---TTG-T--TA---CTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GC-A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTT-C-TA-TATCATTGTTG-TTATATCGCTCATGT---ATCATCTT-----T--CCATAC---TT--------TGT------A------TGTACATTTATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAACGTGT-----------CTCAGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATAT-ACT--GCTT--AA---CGCAT--TA---CTGTGATATA----TAT-C--AAAAG-T--AA-TTA-------ATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTC-CTTT-TATCATTGTTA-TCATATCGATCATGC---AAAATGTTG----TTGTCATGC---TT--------TGT------A------TGTACAT-TATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAACATAT---------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATACAA-T--GTTT--AATTTT---T--TA---CTGTGATATA----TAT-T--AAAAA-T--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTT-C-TA-TATTAATGTTG-TTATATCATTTATGC---ATCATGTTG----TCACCATGC---AT--------TGTCTTTACA------TT------TATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAA----TCTGATAT-A-CTGG-CT--AC---T---TATTA---CTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-AC-AN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTT-C-TA-TATCATTGTTG-GTATATCGTTCATTT---ATCATGTTG----TTGTCGTGC---TTGATATATATAT------A------TT------TATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatA--CTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-A--CAAA---GA--GATGATCAGATTACT-CT-TTGTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA----------AT-------G--G-ACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTTCAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTGTGATAT-AAT--G-TTT-AA---C---T--TATTACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGA-ATG--GAA-ATAAGAAAAAAGCC--------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTA---TTATGATT-CTT-C-TACTAT--GTGTTGATTATATT-TTTATGC-------TGTTG----T
Alignments
lowQualScore : 1 222 11 555555 11 11 11 11 11 222 11 11 111 1 111 11 1 33333 333333 22 1 4444444444 2222222 1 222 4444444 1 222 1 1 11 1111 1 33333 3333 1 11 111 444444444 1 2222222 1111 77777777777777777777777 111 1111 111 7777777777777777777777777777777777777777777777777777777777777777777 11111111 444444444444444444444
lowQualScore : 5 111 2 1 77 1 1 2 1 6 7 1 0 222222 11 55 3 6 33 7 1 99 66 3 11 3 222 11 0 77 8 33 999 3 222 5 1 444 0 11 6 8 6 3 33333 0 888888 00 1 0 3 3 1111111111 3 0 3333333 1 0 0 0 1 2 0 2 2 1 1 2 0 777 3 1 0 0 6 7 1 3333333 3 1 333 3 1 3 44 8888 3 7 33333 6666 3 1 3 0 2 1 11 8 444 777777777 8 8 0 66 0 44 0000000 5 5 4 3 2 1 2 4 0000 00000000000000000000000 777 0000 5 66 5 77777 2 111 3 5 5 3333333333333333333333333333333333333333333333333333333333333333333 00 00 00 4 1 22 444 4 3 0 4 777 8888 777 66666666 444444444444444444444 3
lowQualScore : . ... . . .. . . . . . . . . ...... .. .. . . .. . . .. .. . .. . ... .. . .. . .. ... . ... . . ... . .. . . . . ..... . ...... .. . . . . .......... . . ....... . . . . . . . . . . . . . ... . . . . . . . ....... . . ... . . . .. .... . . ..... .... . . . . . . .. . ... ......... . . . .. . .. ....... . . . . . . . . .... ....................... ... .... . .. . ..... . ... . . . ................................................................... .. .. .. . . .. ... . . . . ... .... ... ........ ..................... .
lowQualScore : 5 555 5 0 55 0 0 5 0 7 3 0 7 777777 00 77 7 7 88 3 0 55 44 8 00 8 000 00 8 00 0 66 444 2 444 6 4 888 8 00 4 0 7 3 33333 7 333333 77 0 0 2 2 2222222222 2 8 5555555 4 2 8 0 0 5 2 5 5 0 0 5 2 000 2 0 7 7 7 3 0 3333333 3 0 333 3 0 3 00 0000 3 3 33333 3333 3 0 2 2 5 4 00 0 000 000000000 0 0 1 99 0 66 5555555 0 0 1 4 0 9 2 4 4444 00000000000000000000000 555 6666 0 99 0 00000 5 666 1 0 0 8888888888888888888888888888888888888888888888888888888888888888888 55 55 88 7 6 77 666 0 2 8 0 000 5555 888 11111111 222222222222222222222 2
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTC--NA--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATAT-ACTG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTC--GA--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATAT-A-TG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGTATTC--CACTTTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-A--TTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--AAAA---GA--GTTGATCAGATTAAT-CT---ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTAC----TGTC-ATAGATA--AAAG-ACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTTCAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAGCGGTACCTTTTTAA-TTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAACATATATACGGTAGTGTTTAAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTGTGA--------------------------TTA---CTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-AC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTT-G-TA-TATTATTGTTG-TTATATCGCCCATGC---ATCA----------TGCCATGC---TT--------TGT------A------TG------TATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACAC--TAAGTTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--CGA--C-AA---GATGGTTCAACAAA--AATAAT-GTGTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAA--CAAAT--GT--GTTGATCAGATT-GT-CTATTGTCATGTGTTTAGGATAA--AAAATGGGTTA--GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGTACTCAGGA--TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGA--TTactcttcagaacacttttcactc
gi|13 : TATTTGTGTA--ATT----TTATTT-A-TA-TATCATTGTTG-TTCTTTCGTTCATGC---ATCATATTG----CTGTCATGT---TC--------TGT------GTGTAATTG------TATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTGTAATAT-A-
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTT-C-T------------G-TTATATCATTCATGC---ATCATGCTG----TTTCTATG----TG--------TAC------A------TT------TATTAACAAAGTACATatggtgaacgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|17 : TCTCCTCAATGCCCC-T--CACTTTTACTGTTC-TC-ATAGATA--G--ATGTGGATTGTTTT
gi|2 : gacaattgaACGTTTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATCAGATTTCT-CT-TTGCCAT--GTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTAC----C-TTTATAGGTAATG--G-ACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A-TT-CAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT---AT-------TTTTTT-TTAATT---TGAGG-TTTTCCA-TGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--AT-TTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATAT-------TGTTTAAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTGTGATATAA-TGT----TT--AA---CTTATTA---CTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-AC-ACNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTT-T-TA-TATAAGTGTTG-CTTTATTGTTCATGCATAATCACGTTGAGCATTGCCATGCATATT--------T-T------A------TG------TA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTGTGATAT-ACTG-----TT--TA---C---CTATCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-AC-ACTT-GAC-ATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGTAC----ATTTGC-TA-TATCATTGTTG-TTATATCGTCCATGT---AGCATGTTA----TTGCTATGC---TT--------TGT------A------TGTCCAGCTATTACC-GAATAGATcatttaaactaccaca
gi|4 : a-ACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-CTTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTCTT-------TTAGTT-TGAACT---GGTAC-TTTTTTATTTTCT-GTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TAT-TTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAACTTAT-T-------TTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTGTGATAT-ACTG-----TTTAAA---TTG-TTA---CTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GC-A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTT-C-TA-TATCATTGTTG-TTATATCGCTCATGT---ATCATCTT-----T--CCATAC---TT--------TGT------A------TGTACATTTATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAACGTGT-----------CTCAGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATAT-ACTGC----TT--AA---CGCATTA---CTGTGATATA----TAT-C--AAAAG-T--AA-TTA-------ATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTC-CTTT-TATCATTGTTA-TCATATCGATCATGC---AAAATGTTG----TTGTCATGC---TT--------TGT------A------TGTACAT-TATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAACATAT---------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATACAA-TGT----TT--AATTTT---TTA---CTGTGATATA----TAT-T--AAAAA-T--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTT-C-TA-TATTAATGTTG-TTATATCATTTATGC---ATCATGTTG----TCACCATGC---AT--------TGTCTTTACA------TT------TATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAA----TCTGATAT-ACTGGCTACTT--A--------TTA---CTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-AC-AN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTT-C-TA-TATCATTGTTG-GTATATCGTTCATTT---ATCATGTTG----TTGTCGTGC---TTGATATATATAT------A------TT------TATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatA--CTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-A--CAAA---GA--GATGATCAGATTACT-CT-TTGTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA----------AT-------G--G-ACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTTCAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTGTGATAT-AATG-----TTT-AA---C---TTATTACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGA-ATG--GAA-ATAAGAAAAAAGCC--------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTA---TTATGATT-CTT-C-TACTAT--GTGTTGATTATATT-TTTATGC-------TGTTG----T
Alignments
lowQualScore : 1 222 11 444444 11 11 11 11 11 222 11 11 111 1 111 11 1 33333 333333 22 11 4444444444 2222222 1 222 4444444 1 222 1 1 11 1111 1 33333 3333 1 11 111 444444444 1 2222222 1111 555555555555555555 111 1111 111 7777777777777777777777777777777777777777777777777777777777777777777 11111111 444444444444444444444
lowQualScore : 5 111 2 1 77 1 1 2 1 6 7 1 0 777777 11 55 3 6 33 7 1 99 66 3 11 3 222 11 0 77 8 33 999 3 222 5 1 444 0 11 6 8 6 3 33333 0 888888 00 1 33 3 1111111111 3 0 3333333 1 0 0 0 1 2 0 2 2 1 1 2 0 777 3 1 0 0 6 7 1 3333333 3 1 333 3 1 3 44 8888 3 7 33333 6666 3 1 3 0 2 1 11 8 444 777777777 8 8 0 66 0 44 0000000 5 5 4 3 2 1 2 4 0000 3 555555555555555555 777 0000 5 66 5 77777 0 111 3 5 5 3333333333333333333333333333333333333333333333333333333333333333333 00 00 00 4 1 22 444 4 3 0 4 777 8888 777 66666666 444444444444444444444 3
lowQualScore : . ... . . .. . . . . . . . . ...... .. .. . . .. . . .. .. . .. . ... .. . .. . .. ... . ... . . ... . .. . . . . ..... . ...... .. . .. . .......... . . ....... . . . . . . . . . . . . . ... . . . . . . . ....... . . ... . . . .. .... . . ..... .... . . . . . . .. . ... ......... . . . .. . .. ....... . . . . . . . . .... . .................. ... .... . .. . ..... . ... . . . ................................................................... .. .. .. . . .. ... . . . . ... .... ... ........ ..................... .
lowQualScore : 5 555 5 0 55 0 0 5 0 7 3 0 7 000000 00 77 7 7 88 3 0 55 44 8 00 8 000 00 8 00 0 66 444 2 444 6 4 888 8 00 4 0 7 3 33333 7 333333 77 0 22 2 2222222222 2 8 5555555 4 2 8 0 0 5 2 5 5 0 0 5 2 000 2 0 7 7 7 3 0 3333333 3 0 333 3 0 3 00 0000 3 3 33333 3333 3 0 2 2 5 4 00 0 000 000000000 0 0 1 99 0 66 5555555 0 0 1 4 0 9 2 4 4444 9 111111111111111111 555 6666 0 99 0 00000 1 666 1 0 0 8888888888888888888888888888888888888888888888888888888888888888888 55 55 88 7 6 77 666 0 2 8 0 000 5555 888 11111111 222222222222222222222 2
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATACTG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGTATTCC--ACTTTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-A--TTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--AAAA---GA--GTTGATCAGATTAAT-CT---ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTAC----TGTC-ATAGATA--AAAG-ACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTTCAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAGCGGTACCTTTTTAA-TTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAACATATATACGGTAGTGTTTAAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTGTGA-------------------------TTA---CTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-AC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTT-G-TA-TATTATTGTTG-TTATATCGCCCATGC---ATCA----------TGCCATGC---TT--------TGT------A------TG------TATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACACT--AAGTTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--CGA--C-AA---GATGGTTCAACAAA--AATAAT-GTGTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAA--CAAAT--GT--GTTGATCAGATT-GT-CTATTGTCATGTGTTTAGGATAA--AAAATGGGTTA--GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGTACTCAGGA--TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGA--TTactcttcagaacacttttcactc
gi|13 : TATTTGTGTA--ATT----TTATTT-A-TA-TATCATTGTTG-TTCTTTCGTTCATGC---ATCATATTG----CTGTCATGT---TC--------TGT------GTGTAATTG------TATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTGTAATATAATG-----
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTT-C-T------------G-TTATATCATTCATGC---ATCATGCTG----TTTCTATG----TG--------TAC------A------TT------TATTAACAAAGTACATgtgaacgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|17 : TCTCCTCAATGCCCC---TCACTTTTACTGTTC-TC-ATAGATA--G--ATGTGGATTGTTTT
gi|2 : gacaattgaACGTTTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATCAGATTTCT-CT-TTGCCAT--GTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTAC----C-TTTATAGGTAATG--G-ACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A-TT-CAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT---AT-------TTTTTT-TTAATT---TGAGG-TTTTCCA-TGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--AT-TTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATAT-------TGTTTAAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTGTGATATAATGT----TT--AA---CTTATTA---CTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-AC-ACNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTT-T-TA-TATAAGTGTTG-CTTTATTGTTCATGCATAATCACGTTGAGCATTGCCATGCATATT--------T-T------A------TG------TA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTGTGATATACTG-----TT--TA---C---CTATCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-AC-ACTT-GAC-ATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGTAC----ATTTGC-TA-TATCATTGTTG-TTATATCGTCCATGT---AGCATGTTA----TTGCTATGC---TT--------TGT------A------TGTCCAGCTATTACC-GAATAGATcatttaaactaccaca
gi|4 : a-ACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-CTTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTCTT-------TTAGTT-TGAACT---GGTAC-TTTTTTATTTTCT-GTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TAT-TTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAACTTAT-T-------TTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTGTGATATACTG-----TTTAAA---TTG-TTA---CTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GC-A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTT-C-TA-TATCATTGTTG-TTATATCGCTCATGT---ATCATCTT-----T--CCATAC---TT--------TGT------A------TGTACATTTATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAACGTGT-----------CTCAGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATATACTGC----TT--AA---CGCATTA---CTGTGATATA----TAT-C--AAAAG-T--AA-TT-------AATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTC-CTTT-TATCATTGTTA-TCATATCGATCATGC---AAAATGTTG----TTGTCATGC---TT--------TGT------A------TGTACAT-TATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAACATAT---------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATACAATGT----TT--AATTTT---TTA---CTGTGATATA----TAT-T--AAAAA-T--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTT-C-TA-TATTAATGTTG-TTATATCATTTATGC---ATCATGTTG----TCACCATGC---AT--------TGTCTTTACA------TT------TATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAA----TCTGATATACTGGCTACTT--A--------TTA---CTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-AC-AN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTT-C-TA-TATCATTGTTG-GTATATCGTTCATTT---ATCATGTTG----TTGTCGTGC---TTGATATATATAT------A------TT------TATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatA--CTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-A--CAAA---GA--GATGATCAGATTACT-CT-TTGTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA----------AT-------G--G-ACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTTCAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTGTGATATAATG-----TTT-AA---C---TTATTACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGA-ATG--GAA-ATAAGAAAAAAGCC--------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTA---TTATGATT-CTT-C-TACTAT--GTGTTGATTATATT-TTTATGC-------TGTTG----T
Alignments
lowQualScore : 1 222 11 444444 11 11 11 11 11 222 11 11 111 1 111 11 1 33333 333333 22 11 4444444444 2222222 1 222 4444444 1 222 1 1 11 1111 1 33333 3333 1 11 111 444444444 1 2222222 1111 555555555555555555 111 1111 111 7777777777777777777777777777777777777777777777777777777777777777777 11111111 444444444444444444444
lowQualScore : 5 111 2 1 77 1 1 2 1 6 7 1 0 777777 11 55 3 6 33 7 1 99 66 3 11 3 222 11 0 77 8 33 999 3 222 5 1 444 0 11 6 8 6 3 33333 0 888888 00 1 33 3 1111111111 3 0 3333333 1 0 0 0 1 2 0 2 2 1 1 2 0 777 3 1 0 0 6 7 1 3333333 3 1 333 3 1 3 44 8888 3 7 33333 6666 3 1 3 0 2 1 11 8 444 777777777 8 8 0 66 0 44 0000000 5 5 4 3 2 1 2 4 0000 2 555555555555555555 777 0000 5 66 5 77777 2 111 3 5 5 3333333333333333333333333333333333333333333333333333333333333333333 00 00 00 4 11 444 4 3 0 4 777 8888 777 66666666 444444444444444444444 3
lowQualScore : . ... . . .. . . . . . . . . ...... .. .. . . .. . . .. .. . .. . ... .. . .. . .. ... . ... . . ... . .. . . . . ..... . ...... .. . .. . .......... . . ....... . . . . . . . . . . . . . ... . . . . . . . ....... . . ... . . . .. .... . . ..... .... . . . . . . .. . ... ......... . . . .. . .. ....... . . . . . . . . .... . .................. ... .... . .. . ..... . ... . . . ................................................................... .. .. .. . .. ... . . . . ... .... ... ........ ..................... .
lowQualScore : 5 555 5 0 55 0 0 5 0 7 3 0 7 000000 00 77 7 7 88 3 0 55 44 8 00 8 000 00 8 00 0 66 444 2 444 6 4 888 8 00 4 0 7 3 33333 7 333333 77 0 22 2 2222222222 2 8 5555555 4 2 8 0 0 5 2 5 5 0 0 5 2 000 2 0 7 7 7 3 0 3333333 3 0 333 3 0 3 00 0000 3 3 33333 3333 3 0 2 2 5 4 00 0 000 000000000 0 0 1 99 0 66 5555555 0 0 1 4 0 9 2 4 4444 6 111111111111111111 555 6666 0 99 0 00000 5 666 1 0 0 8888888888888888888888888888888888888888888888888888888888888888888 55 55 88 7 88 666 0 2 8 0 000 5555 888 11111111 222222222222222222222 2
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGTATTCC--ACTTTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-A--TTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--AAAA---GA--GTTGATCAGATTAAT-CT---ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTAC----TGTC-ATAGATA--AAAG-ACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTTCAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAGCGGTACCTTTTTAA-TTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAACATATATACGGTAGTGTTTAAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTGTGA-------------------------TTA---CTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-AC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTT-G-TA-TATTATTGTTG-TTATATCGCCCATGC---ATCA----------TGCCATGC---TT--------TGT------A------TG------TATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACACT--AAGTTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--CGA--C-AA---GATGGTTCAACAAA--AATAAT-GTGTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAA--CAAAT--GT--GTTGATCAGATT-GT-CTATTGTCATGTGTTTAGGATAA--AAAATGGGTTA--GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGTACTCAGGA--TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGA--TTactcttcagaacacttttcactc
gi|13 : TATTTGTGTA--ATT----TTATTT-A-TA-TATCATTGTTG-TTCTTTCGTTCATGC---ATCATATTG----CTGTCATGT---TC--------TGT------GTGTAATTG------TATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTGTAATATAATG-----
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTT-C-T------------G-TTATATCATTCATGC---ATCATGCTG----TTTCTATG----TG--------TAC------A------TT------TATTAACAAAGTACATgtgaacgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|17 : TCTCCTCAATGCCCC---TCACTTTTACTGTTC-TC-ATAGATA--G--ATGTGGATTGTTTT
gi|2 : gacaattgaACGTTTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATCAGATTTCT-CT-TTGCCAT--GTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTAC----C-TTTATAGGTAATG--G-ACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A-TT-CAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT---AT-------TTTTTT-TTAATT---TGAGG-TTTTCCA-TGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--AT-TTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATAT-------TGTTTAAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTGTGATATAATGT----TT--AA---CTTATTA---CTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-AC-ACNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTT-T-TA-TATAAGTGTTG-CTTTATTGTTCATGCATAATCACGTTGAGCATTGCCATGCATATT--------T-T------A------TG------TA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTGTGATATACTG-----TT--TA---C---CTATCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-AC-ACTT-GAC-ATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGTA----CATTTGC-TA-TATCATTGTTG-TTATATCGTCCATGT---AGCATGTTA----TTGCTATGC---TT--------TGT------A------TGTCCAGCTATTACC-GAATAGATcatttaaactaccaca
gi|4 : a-ACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-CTTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTCTT-------TTAGTT-TGAACT---GGTAC-TTTTTTATTTTCT-GTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TAT-TTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAACTTAT-T-------TTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTGTGATATACTG-----TTTAAA---TTG-TTA---CTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GC-A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTT-C-TA-TATCATTGTTG-TTATATCGCTCATGT---ATCATCTT-----T--CCATAC---TT--------TGT------A------TGTACATTTATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAACGTGT-----------CTCAGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATATACTGC----TT--AA---CGCATTA---CTGTGATATA----TAT-C--AAAAG-T--AA-TTA-------ATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTC-CTTT-TATCATTGTTA-TCATATCGATCATGC---AAAATGTTG----TTGTCATGC---TT--------TGT------A------TGTACAT-TATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAACATAT---------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATACAATGT----TT--AATTTT---TTA---CTGTGATATA----TAT-T--AAAAA-T--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTT-C-TA-TATTAATGTTG-TTATATCATTTATGC---ATCATGTTG----TCACCATGC---AT--------TGTCTTTACA------TT------TATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAA----TCTGATATACTGGCTACTT--A--------TTA---CTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-AC-AN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTT-C-TA-TATCATTGTTG-GTATATCGTTCATTT---ATCATGTTG----TTGTCGTGC---TTGATATATATAT------A------TT------TATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatA--CTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-A--CAAA---GA--GATGATCAGATTACT-CT-TTGTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA----------AT-------G--G-ACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTTCAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTGTGATATAATG-----TTT-AA---C---TTATTACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGA-ATG--GAA-ATAAGAAAAAAGCC--------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTA---TTATGATT-CTT-C-TACTAT--GTGTTGATTATATT-TTTATGC-------TGTTG----T
blockSeqs : T ATT C A . G A T A C T T TAAG TT CG A G TG T A AA CT G AA A AAC TG AA A AT TGT T CGC G A TTG AG C T C T ATATA TTTTTC GA G AT A CTGTTCTC A ATGG A . T C G G C T C CT T C C T A . . T . . C T CA GTTA . T CCTTT AG . G A G T TT A CAG AT C T GC G TG GCAA T T T G A A A A AATT A TTTAACTTA TCA ATAA A TA C AGGAC A CAA C A A CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G TA GC C C A ATA AGCA ATA GATATATA GTGTAATTG A
blockSeqs : . . A AGGA . T T G . . T CC TC A . G T . TC . G TT C A T G CTT . A . . . . . . T T A CCTTT A GAT T . T C G T A T C AA T T . . T . . C . . T . T . . . . T . A A G A . . . T . . . A GA ACAA . . T G G A A . C A TTTAAATTG TTA . . . . AA C AA T . . CTTGACATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATG T TA CT . A . . . . . ATGTCCAGC A
blockSeqs : . T A . A . A . . AC . T T C T T A CTT . T . T . . . . GG T . G . . . A A . A . . . G . . . . . . . . TT ACAG . . T G A T T . C C CTTAACGCA . . . . . AA C AA A . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T TT A . C . . . . . ATGTACATT A
blockSeqs : . . . . . . G . T T . T . G G . . . T G . . . . . . . . TG A . . C A A C T . T C TTTAATTTT . . . . . GA C TA T . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C CA C . C . . . . . CTTTACATT A
blockSeqs : . . TG A . . T G A A A . T C GCTACTTA . . . . . AA C T C . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T AA T . C . . . . . ATGTACAT A
blockSeqs : . . T A . . A . C C A . C A TTTAAC . . . . . AA . . T . . TGGAAATAAGAAAAAAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T TA C . T . . . . . ATT .
blockSeqs : . . . T . . . . . A A . T C TTTAC . . . . . G . . T . . TGGCAATAAGAGAAAAAACATTTTTCCTTTTTGTGTTATTAGCGGGT T TA C . C . . . . . ATG .
blockSeqs : . . . . A . AG C . . . . . . . ATT
blockSeqs : . T C . . . . .
blockSeqCons : CC T* ********* TTTAACTTA********* ATGTACAT*************
originalCons : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATATAT-------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTG-----TT--AA---C---TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGT------A------TG------TATTACCAAAATAAAT
finalCons : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CTT-TGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTTCAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNA-TTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAACATAT---------TGTTTAAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTGTTTAACTTA---------TTA---CTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--------TGTATGTACAT-------------TATTACCAAAATAAAT
Alignments
lowQualScore : 1 222 11 444444 11 11 11 11 11 222 11 11 111 1 111 11 1 33333 333333 22 1 4444444444 2222222 1 2222 1 4444444 1 222 1 2 1111 1 33333 3333 1 11 111 11 333333333 1 2222222 1111 1111 111 7777777777777777777777777777777777777777777777777777777777777777777 2222
lowQualScore : 5 111 2 1 77 1 1 2 1 6 7 1 0 777777 11 55 3 6 33 7 1 99 66 3 11 3 222 11 0 77 8 33 999 3 222 5 1 444 0 11 6 8 6 3 33333 0 888888 00 1 0 3 3 1111111111 3 0 3333333 1 0 0 0 1 2 0 2 2 1 1 2 0 0000 0 1 0 0 6 7 1 3333333 3 1 333 3 1 6 8888 3 7 33333 6666 3 1 3 0 2 1 11 8 444 11 222222222 5 8 8 8 0 66 0 44 0000000 5 5 4 3 2 1 2 4 0000 2 0 4 0000 5 66 5 77777 0 111 3 5 5 3333333333333333333333333333333333333333333333333333333333333333333 00 00 00 4 1 22 444 4 3 0 4 777 8888 777 66 0 0 3333 777 1
lowQualScore : . ... . . .. . . . . . . . . ...... .. .. . . .. . . .. .. . .. . ... .. . .. . .. ... . ... . . ... . .. . . . . ..... . ...... .. . . . . .......... . . ....... . . . . . . . . . . . . . .... . . . . . . . ....... . . ... . . . .... . . ..... .... . . . . . . .. . ... .. ......... . . . . . .. . .. ....... . . . . . . . . .... . . . .... . .. . ..... . ... . . . ................................................................... .. .. .. . . .. ... . . . . ... .... ... .. . . .... ... .
lowQualScore : 5 555 5 0 55 0 0 5 0 7 3 0 7 000000 00 77 7 7 88 3 0 55 44 8 00 8 000 00 8 00 0 66 444 2 444 6 4 888 8 00 4 0 7 3 33333 7 333333 77 0 0 2 2 2222222222 2 8 5555555 4 2 8 0 0 5 2 5 5 0 0 5 2 2222 0 0 7 7 7 3 0 3333333 3 0 333 3 0 7 0000 3 3 33333 3333 3 0 2 2 5 4 00 0 000 00 000000000 0 0 0 0 1 99 0 66 5555555 0 0 1 4 0 9 2 4 4444 6 7 6 6666 0 99 0 00000 1 666 1 0 0 8888888888888888888888888888888888888888888888888888888888888888888 55 55 88 7 6 77 666 0 2 8 0 000 5555 888 11 1 1 7777 888 9
consensus : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTT-CAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNATTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAAC--ATAT---------TGTTT-AAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTGTTTAACTTATTACTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--TGTATGTACATT--T---ATTACCAAAATAAAT
Reference ( family-2093 ) : AAGCCTAGTAATTCTTGACCACGCATACNAGGCCGAGCNCNTGGTAACGTCTCTCGTNCAGTGTCACTTCGACTATGCATGTTCNTTCCGGTACTCN--A--TTGACTAAAAATCTGAAAATTACGCTTCAAACTACGCAGAATAAGA--TTCATACGNTTTGTTCTCAACTTGGACAACATGTCTCATATTGGACCGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--CAAA---GA--GTTGATCAGATTANT-CT-TTGTCAT-TGTTCAAAACAT--CAAGTTGGGTACTTCTCCAGATTATCTA--GGCGA-ACATTTTGTGCCACTTTA-CTCTG-----TACATGATCGCTGTACCCGATCTAGTACGACT------GCTC-ATTTCTCCCCAATNCCCC-TTTCAGTTTTAC----C-TC-ATAGATA--G--G-ACGGTTTGCTTTACCAAAAGTAGGCAGTTTCGGGGAAA-AGTAATNTTCATACCGAGGTGTTGTTCTATGGAANAGTCTTCCTCAGNATATTAGAAATATTGATAGGCCAGAT-A-TTT-CAAGAATGCTGCCAAGAATCACATGTTGGCCATCTAACTNTCCATTCGATATAACATTGATCTCGGAGGTTTTTATTCAGTTTCNT-------TTTTTT-TTAANT---GGTAC-TTTTTNATTTCC-GTAGTT-TTTTATT-AATATAAGCATA-----TTATGCATGAATTGGTAATATATAATCTAGCACTCACTGTGATAAAG-CAT-TTTGTGGGTNTTTTATTATGATTATTGTAAAGTGACGTTAAAGTTA--GGTC-GTGTCA---TATAAC--ATAT---------TGTTT-AAA-T-ATAGTACGTA--ATAC-TAATGAGATA---A---TG-AC-ATAGTATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATATANTGTTTAACTTATTACTGTGATATA----TAT-T--AAAAA-T--GA-TTACT-AACAATTACATGACTTTCTACGGCATGCCATCAATATTCAAGGACC-GC-AC---GAC-ATAAGAGAAAANCCGTANCNCTTTTGTGCGATATCCTAGATNTTGNNTCGCNNNCNGNNACCTCGTGATATGTGTGTATCGTTATGATTATTT-C-TA-TATCATTGTTG-TTATATCGTTCATGC---ATCATGTTG----TTGCCATGC---TT--TGTATGTACA-T--T---ATTACCAAAATAAAT
gi|1 : AAGCC-AGTA---CTTGACTAAATATACCAGGCCGAACTTTTGGTAACATCTCTCGTTCAGTATCACTTCGATTATGCATGTTTCTTCTGGTATTCC--ACTTTGACTCAAAATCTGAAGATTAGACTTCAAACTACGCAAAATAA-A--TTCATACAATTTGTTCTCAACTTGGACAGCATGTCTCATATTGGACAGGAACATTTTAAGTTTTTAAACTGGTTATCAGTCCCAA--AAAA---GA--GTTGATCAGATTAAT-CT---ATCAT--GTTCAAAA-AT--CAAGTTGTGTTCATCTCCAGATTATCTA--GGTGA-ACATTTTGTGCCACTTTA-CTCTG-----TGCATGATCTCTGTACCCGATCTAGTACGACT------GATC-ATTTCTCCTTAATGCCCC-TTTCAGTTTTAC----TGTC-ATAGATA--AAAG-ACGGATTGCTTTAGCAAAAGTAGGCAGCTGCGGAGAAACAGTAATGTTCATGCCGAGGTGTTGTTCTATGGAACAATCTTCCTCAGAACATAAGAAATATTGATAGGCCAAAT-AATTT-CAAGAATGTTGCCAAGAATCACATGTTGGCCATCTAACTATCCATTTGATATAACATTGATCTCAGAGGGTTTTATTCAGTTTCCTGATCAGTTTTTTTATTAAGTAGCGGTACCTTTTTAATTTCT-GTAGTT-TTTTTTTTAATATAAGCATA-----TTATGCTTGAATTGGTATTCTATAATCTAGCACTAACTATGATAAAAACATCTTTGTGGGCCCTTTATTATGATTATTGTAAAGTGACATTAAAGTTA--GGTC-GTGTCA---TAAAAC--ATATATACGGTAGTGTTT-AAG-T-ATAGTACGTA--ATAC-CAATGAGATA---A---TG-AC-ACGATATGAAATATGAAATAATAATGAAGTTGTTTGTGATATTTAATAGTACATGTATACTCAAAGAC-AGTTAACTAATCAA---CTGTG----------------ATTACTGTGATATA----TAT-T--CAAAA-C--GA-TTACT-AACAATTACATGACTTTCTGTGGCATACCATCAATATTCAAGGACC-AC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTATGACAGTTT-G-TA-TATTATTGTTG-TTATATCGCCCATGC---ATCA----------TGCCATGC---TT--TGTATG--------T---ATTACAAAAATAAAT
gi|10 : TCATTTCGACTATGCTTGCTCTTTCTGGTACACT--AAGTTGACAAAAAA----AAAATTAT-------ATAACACAGAACAAGATGTTCA---GATTTATTCTATACTGGAACAA-AGGTCACATACTTGTCCTGAACATTTTAAATCCCTGAAATGGCTACCCGT--CGA--C-AA---GATGGTTCAACAAA--AATAAT-GTGTCAT-TTTTTAAAA-ATCGCAAAT--AATATTGCTCCGGAT--TCTAAGGGCGATACATTT
gi|11 : CATATTGGATCGGAACAGTTCCAGTCTTTAAACCGGTTACCAAT--TAA--CAAAT--GT--GTTGATCAGATT-GT-CTATTGTCATGTGTTTAGGATAA--AAAATGGGTTA--GCCCCTGATTATATG--GGAGA-ACCTTTT
gi|12 : AAGCCTAATAATTCTTGACCACGCATACAAAG--AAGCGCATGATAATGTCTCTTTTATAGTGTCACTT-GACTA--CATGTTCATTTCGGTACTCAGGA--TTGTATAAAATTTTGAAAAATACGCTTCAAACTACTCAGAATAAGA--TTactcttcagaacacttttcactc
gi|13 : TATTTGTGTA--ATT----TTATTT-A-TA-TATCATTGTTG-TTCTTTCGTTCATGC---ATCATATTG----CTGTCATGT---TC--TGTGTGTA-A-TTGT---ATTACCAAATTAAtca
gi|14 : TAATAGTACAT----ACTCAAA-ACAAATTAACTACTCAA---CTGTAATATAATGGTGAAC
gi|15 : tgttaTGTGTGTAGTGTTATGATTATTT-C-T------------G-TTATATCATTCATGC---ATCATGCTG----TTTCTATG------------TGTACATT--T---ATTAACAAAGTACATgtcccttttctacttggtagtatgt
gi|16 : CGAA--ATATGTAA--AGATAGCAA---TG-AT-ATA-CATGAAATATGAAATAATAATGAAGTTATCTGAGATATTCTATAGTACc
gi|17 : TCTCCTCAATGCCCC-T--CACTTTTACTGTTC-TC-ATAGATA--G--ATGTGGATTGTTTT
gi|2 : gacaattgaACGTTTTGTTCTCAACTTGGATAAAATGTCTCATATTGGACCGGAACATTTTAATTTTTTAAACTGGTTATCAGTCTCAAAACGAAAACGA--GTTGATCAGATTTCT-CT-TTGCCAT--GTTCAAAACAT--TAAGTTGAGTACTTCTCCAGATTAGCAA--GGTGA-CCATTTTGAGCCA-TTTATCGCTGATATACACATGGTCGCTGTACCCGATCTAGCATGATT------GCTCGATTTCTCCCTAATTCCCCATTTC-GTTTTAC----C-TTTATAGGTAATG--G-ACGGTTTGCTGTACCAAAAGTACACAGTTTCGGAAATA-AGTATTTTGCATACCAAGGTGTTGTTCTATGGATCAACCTTCCTCAGTGTATTAGAAATGGCCATAGGC---AT-A--TT-CAAGAATGCTTCCAATAATCATATGTTGGCCATATGACTCTCCATTCAATATAACATTGATCTCGGAGGTTTTTAATCAGT---AT-------TTTTTT-TTAATT---TGAGG-TTTTCCATGTCCAATAGTTATTTTAAT-AA-ATACCGATACCTTTTTATGCATGAATTGGTAATATATCATCTAGTACTCACTGTGATAAAG--AT-TTTGTGTGTGTTTT-TTATGGTTAAAGTAAAGTGACTTTAAAGTTA--AGTC-GTGTCA---TATAACATATAT---------TGTTT-AAACT-ATA-T-------ATAT-CAATGCGATA---A---CA-ACTGTAGTACGGAGTATAAAATAATAATGAAATGGTCCGTGATATTTAATATTACCTGTATCCTGAAAGAA-AATTAACTAATCAAAATTTGTGATATAATGTTTAACTTATTACTATGATATA----TATATTAAAAAA-T--AA-TTAAT-AACAATTACATGGTTTTCTACGGCATGCCATCAATATTCAATGACC-AC-ACNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTGTAACTTTTT-T-TA-TATAAGTGTTG-CTTTATTGTTCATGCATAATCACGTTGAGCATTGCCATGCATATT--T-TATGTACA-T--TTAAACTACCA
gi|3 : ATGTA--ATAC-TAAGAAAGCA---A---TG-CT-ATAGTATGCGATATGAAATACTAGTGGCGTTGTCTTTTTTTTTTAATAGTA------TACTCAAAGTC-GATTTACTCATTAA---CTGTGATATACTGTTTA-CCTATCACTGTGATATA----TAT-C--ATAAC-T--AA-AAACTCAACAATTGCATGAATTTCTATGGCATGTCATCAATAT-CAAAGACC-AC-ACTT-GAC-ATAAGAGAAAGCCCGTATCTCTTTTGTGTGATATCCTAGATATTGGTTCGCATTTCATGACCTTGTAACATGCGTGTATCGGTAC----ATTTGC-TA-TATCATTGTTG-TTATATCGTCCATGT---AGCATGTTA----TTGCTATGC---TT--TGTATGTCCAGC--T---ATTACC-GAATAGATca
gi|4 : a-ACGATTT-TTTTACCAAAAGTAGGCAGTTTCGGGAAAA-ACTCATTTTCAAACAGAGGTTTTGTTCTATGGAAAAGTCTTACTCACTATATTACAAATATTGACAGGCCAGAT-C-TTTTCAAGAATGCTGTCAAGAATCACATGATCGCCATCTAACTTTCCATTTGATATAACATTGATCTCAGAGGTTTTTATT--ATTTCTT-------TTAGTT-TGAACT---GGTAC-TTTTTTATTTTCTGTA----TTTTATT-AATATAAGCCTA-----GTATGCATGAATTGGTAATATATAATCTGGCACTCAATGTGATAA---TAT-TTTGGAGGTATTTTATTATAATTATTGTAAAGTGACATTAAAGTTA--GGT-------A---TATAAC--TTAT---------TTTTTTAAA-T-ACAGTACGTA--ATAC-TAAT---ATG---A---TA-AC-A----ATGACA-ATGAAATATTAAGGAAGTTTTCTGTACTTTTTAATAGTACATGTATAATCAAAGAC-AATTAACTAATCAA---TTGTGATATACTGTTTAAATTGTTACTGTGATACA----TAT-T--AAAAACT--GA-TTACT-AACAACAACATGACTTTCTAAAGCATGTCACCAATTTTCAAGGACC-GC-A-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTACCGTCATTATAATTT-C-TA-TATCATTGTTG-TTATATCGCTCATGT---ATCATCTT-----T--CCATAC---TT--TGTATGTACATT--T---ATTACC-AAATAAAataggatcttacgtgtgtactcatttattattgaatttattaaccgagttaggaaataatatattatgcgaggctctgtcgtgtattatgtcatatttcccaacgagtttgaccatgacaaatcgacgtcatttatatattcaggtaagtacggaaatacttcggcaattttcgtacgaaaaccgagttaaactgaaaacatcgaccgatatcggaagtgatatttcattaggttgatgtaaaaaatatgtcataagtttattatacttctgcactgtaaattatgtgataaatacatttatagaatacatttgttatgtaagcgtaattagtacggtgttccatagcaacaacaaataatattgacttaaatgcgtaacattaagatgc
gi|5 : GTTTATGTTATTGGTCAGTATTACAGTATAAC--GTGT---------C--TC-AGA-TTATAGTGTGTGGCATGCATTATTACACA---T---TGTCC-ACAGCACGAA-TATGAACTAATATTGAAGTTATCT----T-TTTATTAGTACATGTATATTCATAGAC-AATTAACTATTCAA---TTGGTATATACTGCTTAACGCATTACTGTGATATA----TAT-C--AAAAG-T--AA-TT-------AATTACATGACTTTCTTTGGCATGCCATCATTATTCAAGCACC-GCAAT---GGCAATAAGAGAAAA-----AACATTTT---------TCCT---TTTTGTGTTATTAGCGGGTATTTCATGATATGTGTATATCATTATGATTATTC-CTTT-TATCATTGTTA-TCATATCGATCATGC---AAAATGTTG----TTGTCATGC---TT--TGTATGTACA-T--T---ATTACCAAAATGAAT
gi|6 : gttttatttccaaagaacatttattttatttgattatttgttaattacttttcgtttatttcttcgttattagaatattttgatagtttaaattgaatgatttttgtaagctgaaacaaataacgatactgaaaacaacagctttatatttcaaaaggtcatgttatttgtattattgtttgtatctcccagaaatgactccggcactactgaccagtattactACTATTACTATT--AAAGTGACGTTAAAGTTA--GGTC-GTGCCA---TACAAC--ATAT---------TGTTT-AAA-T-ATAGTACGTA--ATAC-TAATGAGATA---ACAATG-AC-ATAATATGAAATATGAAATAATAATGAAGTTGTCTGTGATATTTAATAGTACATGTATACTCAAAGAC-AATTAACTAATCAA---CTGTGATACAATGTTTAATTTTTTACTGTGATATA----TAT-T--AAAAA-T--G------------ATTACATGACTTTTTACGGCATACCATCAATATTCAAGACCC-GC-A----NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTGTATCGTTACGACTATTT-C-TA-TATTAATGTTG-TTATATCATTTATGC---ATCATGTTG----TCACCATGC---AT--TGTCTTTACATT--T---ATTACCAAActatc
gi|7 : TATGAAATAATAATAAAATGATAGGTGCTATT-AATAGTGCACGTATACTCAAAGTC-AATTAACTAATAAA----TCTGATATACTGGCTA-CTTATTACTGTGATATAATAATAT-T--AAAAA-TAGGACTTACT-T----TTACATGACTTTCTATAGCATGTCATTGATATTCAAGGACC-AC-AN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGTGTGTATTGTTATGGTAGTTT-C-TA-TATCATTGTTG-GTATATCGTTCATTT---ATCATGTTG----TTGTCGTGC---TTGATATATATATATT--T---ATTACCAAAATAAAT
gi|8 : atagctttcattttttattaatggtctatggaattataataaacttatA--CTCATACATTTTATTCTCAACTTGGATACCATGTCTCACATTGGACCGGAACATTTTAAGTTTTTAAACGGGTTATCAGTTCC-A--CAAA---GA--GATGATCAGATTACT-CT-TTGTCA--TGTACAAAACAT--TATGTTGGGTACTTCTCCAAATTACCTA--G--GA-ATACTTTGTGCCACATAA-CTCTG-----TACATGATCGCTGTACCCGATAGAGTATGACTTTTTTCGCTT--TTTCTCCCCAATTCCCA-TTTTAGTTTTA----------AT-------G--G-ACGGTTTGCTTTACCAAATGTAAGCAGTTCCGGGGAAA-AGTAATGCT-ATACCCA-------------GGAAAAGTCTTCCTCAGAATATTGGATATATTGATAGGCCAGATAA-TTT-CAAGAATACTGTCAAGAATCACGTGTatatct
gi|9 : aaaatcaTAGTATGTT--ATAC-TAATGAGATA---ACAGTG-AC-AAAGTATGAGCTGTGAAATAATAA----GTTGTCAGTGATATTTA-TAGTACATGTATACTCAACGAC-AACTAATTAATCAA---TTGTGATATAATGTTTAACTTATTACTGTGATATA----TAT-T--CAGAG-T--AA-TTACT-TACACTTAAATGACTTTCTATGGCATGCTATTAATATTAAAGGACCAGA-ATG--GAA-ATAAGAAAAAAGCC--------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTA---TTATGATT-CTT-C-TACTAT--GTGTTGATTATATT-TTTATGC-------TGTTG----T