lowQualScore : 11111111111111111111111111111111111111111111111 11111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 33333333333333333333333333333333333333333333333 11 44444444 1 1 1 00000000000 22222 1 444444 222 111 111111 111 11 1 7777777777777777777777777 222222 11 444444444444 1 2 2 1 8888888 7777777777777777777 11111 11 11 99999999999999999999999999999999999999999999999999999 333333 333333333 33333 11 22222222222222222 3333333333 111 777777777777777777777777777777777777777777777777777777777777777 1 222 11
lowQualScore : 0 3 2 77 22222222222222222222222222222222222222222222222 4 88 44444444 5 5 0 2 99999999999 11111 3 44 111111 222 555 999999 4 222 4 0 6 5 11 22 1 6666666666666666666666666 666666 77 3 888888888888 0 6 0 8 8 4 3 8 2222222 7 6 6 6666666666666666666 99999 1 66 55 2 2 66666666666666666666666666666666666666666666666666666 222222 777777777 33333 3 6 00 1 6 3 6 44444444444444444 2 8888888888 0 1 888 0 111111111111111111111111111111111111111111111111111111111111111 4 0 444 88 2 6
lowQualScore : . . . .. ............................................... . .. ........ . . . . ........... ..... . .. ...... ... ... ...... . ... . . . . .. .. . ......................... ...... .. . ............ . . . . . . . . ....... . . . ................... ..... . .. .. . . ..................................................... ...... ......... ..... . . .. . . . . ................. . .......... . . ... . ............................................................... . . ... .. . .
lowQualScore : 5 0 5 55 55555555555555555555555555555555555555555555555 0 55 00000000 0 5 5 5 00000000000 33333 3 33 777777 777 000 555555 2 888 2 8 0 0 44 22 2 6666666666666666666666666 000000 55 0 222222222222 0 0 7 3 7 0 3 3 0000000 3 7 0 0000000000000000000 88888 2 00 88 0 5 88888888888888888888888888888888888888888888888888888 888888 222222222 77777 5 7 33 8 7 3 7 88888888888888888 2 5555555555 2 4 222 6 000000000000000000000000000000000000000000000000000000000000000 6 0 222 22 5 0
consensus : TGTGNTTGAAGNACGCGCAACGGTTAAACAAAAGTCCAATATACTGTTTGGAAATGTATCTGGTGTGTA----TGGCAGNTTAAGTAATGTGNNATGTATTATATAATGCGGAAACGTNTTCACTTATC-A-TAAAGATTCAT-GATAT-TANACAAA-GTACTTTATTCA-T-AACAAAACNTAGATATA-ATTTCTGAATGAATGTCGAATACCGTATCAATCAGTGNCGAAAAC--CGTAC-GG--CCATTTTC-AA-AACGTCGAA-----TACCGTATCATAGGAAATATACNTTC---GA------ATATATTG-AAACTATTGCATTGTTATTCAAATGTTTTACGCGAAATACAATAAAA-ACATTGTATTCAACA-TTTAATTTCTGA------TTTTTTTACAATAAATNACATTTTCTTG---AC------GA------AGTTTTTGCAATTCCGCTAGCGTTCGGCGTTAAATATACAATAACAACAGACA-NACACCATCATA--A--AAACAGTAC--CTACAT-TACA-AATT-CAT----ATACATTC--TATTTATGTA-N-T-----TTAAAC-TN-TGTGACTAATAT-CGT-GTATATTCA-TATTTAT-TTC----ATGAAAAATAGTACCTTCAA-ANTCGN-TNACCCTGATAAAATACGTCTGTCGAAGACAGTACCT-TCGGTCGAA--------AACCGTA-T--------ACT------------TAAGAGC-GAGTACCGTTTCGGTCG-AAA--ACATAAATNGCAATATTGGTATA
Reference ( gi|1 ) : TGTGCTTGAAGAACACACAA--GTTA--CAAA-GTG-AATGCGCTGTTTGAAGATATATCT-GCATGTAGAATTGGCAGATTAAGTAATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATAATTAAAGATTCATAAATAT-TACGCAAAAGCACTTTATTCA-T-AACAAAATGTAAGTACA-ATTCCTGAACGAGTATCGGATACCGTATCAATCAATGTCGAAAAC--CGTACAAG--CCATTTTCTAATAACGTCGAA-----TACCGTATCACAGGAAATATACATTC---TA------GTATATTG-AAACTATTGCATTGTTATTCAAATGTTTCATGCGAAATACATTAAAACACATTGTATTAAACA-TTTATTTTCTGATTATTTTTTTTTTACAATAAATCACGTTTTCTTG---AT------GA------AGTTTTTGCAATTTCACTAGTGTTCGTTGTTAAGTACACAATAACAACAGACA-CATACCATCATAATA--AAACAGTAC--CTACATGTACAAAAAT-CGT----ATACATTC--TATTTATGTA-A-T-----TTAAACTTA-TGTGACTAATAT-TGT-GTATATTCA-TATTTGT-TTC----ATAAAAAATAATACCTTTAA-ATTCAG-TAACCCTGATAAAATGCGTCTGTCGTATACAGTACCTATCAGTCGAA--------AACTGTA-T--------ACT------------TAAGAGC-G-GTACCGTCTCGGTCG-AAA--TCATAACTCGCAATATCGGTATA
gi|2 : TGTAATTGAAAAACACACAA--GTTA--CA-------------CTGTTTGAAAATATATCTGGTATATA
gi|3 : tTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTTTAGAAATGTAT-----GTGTA----TGGTAGAT--AGT--TA-GTTATGTATTATATA-TGCAGAAACGTATTCACTTATCCAGTAAAAATACATAGTTAT-TACACAAATGTATCTTATTTAAC-AACCAAACTTAAATGCA-ATTTACGGATGAATGTCCAATAAGGTATCAATTAGTG----AAAC-----ACTGGTCCCATT--------ACGTCGAA-----TACCGTATCATA--AAATATACCTTCGAATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATATCTTTTACGTAAAATACAATAAAA-ATATTGTATTCGACA-TTTAATTTCTGA------TTTTTTTACAA-ACATAATATGTTATTG---AT------GAAAGCACAGTTTCTGCAA-------AGCAATCA--GTTTAATATATAATGACAACAGACA-AACAC--TCAC------ACACGGATC--CTATAT------AATT-CAT----ATAAACTCCATATCTACATACA-TGTATATTAAA--TATTGTGACTAAAATGTGTAATATATTCATTTTTTAT-TTCTAGAATAGAAAAtggtagtgacttaattacatgtctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|2 : ccaatatcagatattatttgacTGGCAGTTTAAGTAATGTAAAATGTATTATATAATGGGAAAATGTCTT-----------TAAAGATTCATTGAAAT-TAAGCAAAA-CA-TTTATTCA-TTAACAAAATATAA------ATTCCTGAATGAGTATCGAATACCGTATCAACCAATGACGAAAAC--CGTACCGG--CCATTTTTCAATAACGTCGAA-----AATCGTATCACAGGAAATTTATATTC---GA------ATATATTG-AATCAATTCCATTGTTATTCAAATGTTTTATGCGAAATACATTAAAATACATTGTATTTAACA-TTTTACTTCTGA------TTTTTTTACAATAAATCACATTTTCTTG---ATGAAAACGA------AGTTTTTGCAATTCCGCTTGTGTTCGTCGTTAAATACACAATAACAACAGACA-CACGCCAT-AT------AAACAGTAC--CTACAT------AATT-CAT----ATACATTC--TTTTTATGTA-A-T-----TTAAACTTT-TGTAACTTATA--TAT--TATATTCA-TATTTAT-TTC----ATGAAAAACGATACCTTTAA-AGTCAG-AAACCCTGATAAAATGCGTCTGTCAAAGACAGAATCTCTCGGTCGGA--------TACCGTATT--------ACTCGGCCGAAAACATGAGAAC-GAGTACCGTTTCGGTcc
gi|4 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgataAATTATAGATT-----ATATCTATACAA--GT-CTTTGTTCT-T-AACAAA--GCAGGTATACGCTACTGA-----TA--AAATAC---ATC------TGTCGAAGAC--AGTAC--------CTTTC------GGTCGAA-----TACCGTATAAC
gi|6 : cattttttttctataaagtattttttcttaacaaggTAGATATA-ATTTCTGTATGAATGTCGAATACCGTATCAATCAGTGAAGAAACT--TGTTC--C--CCATT--------ATGTTGAATGGCCTACCGTATCATA--AAATACTCCTTC---GA------ATATTTTGAAAACTATTGCATTtcggtcgagtaccgtttcggtcgaaaacataaatcgcaatattcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|8 : TCGAATACCTTATAACTC--TGTCGAAAACAACGTAAGAG--Caaaataaaaaaaattcaacatcatagtttcgactttttgacttttcaaaatcgtagtttcaacttctcaacatcgtagtttcgacttttcatcatcatagtttcaactttatttaatttaaaaaacaagccacaatggtccccaacataatatatccgttccatgtatatattttaaattgtgtgaaaaatcgttttgacctatattcatttttagttcagaaagaaa
gi|7 : tcattaaagatgcaataaggtaggaacaaatagaaaacgacgacgtacataattcatgtacactctctttatttaaaaacgcatgtggcttacattgagtctattcagaatgtattcatgacaaagagtactctcaacaccgctaacctttataaaatacgtctttcgaagacagtacatatcggATTTTC-AACAACGTAGAA------ACCGTATCATTGGAAATATATATTT---GA------ATTTATTA-AAACTATTGCATTGTTATTCCATTGTTTTATGCAAAATACAATAAAA-ACATTGTATT-AACATTTTATTTTTTA---ATTTTTTTTTAAAAATCAATGACATTTACTTGAAAAC------GC------AGTTATTGCAATTCTACTGGTGTTCGGTGTTAAAAATACAATAACAACAGACA-GA---CAACATA--A--AAACAGCAC--CTATAT-------AATGCAT----ATACATTA--TA-TTATGTA-T-A-----TTAAATTTT-TGTGACTATTAT-CGT-GTATTTTCG-TATTTAT-TTC----ATGAAAAATAaagaatagttttggtcgaaaacataaatcgaaatattggtatattcactgtgttaatactgagttcaatatttcttctaaacaatga
gi|5 : gcatTTTTACAACACCACTAGTGTTTGGTGTTAAA-ATGCAATAACAATAGACA-
gi|12 : ctagtattaaaaatatacgattgtgtttaaagtacatacaagattgagatacagtccacgtatcgttcctcgaatatacatgtgtatgttaggcagatagaaaggaaaatataagtattacaatgcagaaacatctttattcatccagttattatttacacaacttattcatcatataagactaattataaattttagataaagtaccattctatacattttaccattgtgtcaaaaaacttatcttaaaatacgtattcgatcaatgatacaattgcattgtaaaaaataggttttatcttgattccttatagtcaatattgttatgattagcaagtcactggtgagaacacacAATAACATCTGA------ATCAACATAAAACTAAAT-GTATTTCTACA-ATACAAA------------TACATTC---A---ATGTA-T-T-----TTAAA-------TAATTA-TAT-TGT-G------CA-TATTTAT-TTC----CTGAAATATA-T-CCTTCAATATT--GCTTACGCTGTCAAAATGCATCTGTAGAATACCGTAC-----------A--------AAC------------------------------AAGAGT-GAGTATCGTGTCGTTCGAAAA--ACATA--TAGCAATGTTGGTATaaaaagtaggtccagtatagttcatatattttcaatatacata
gi|11 : ATAACAACGGAAAACATATCAT------A--AAGCAGTG----TACGTTTACATATAC-TATGCAAATACATTA---A---ATGCA-CCT-----TTAAATGAG-TTTGACTAATGT-CGT-ATATGTTCA-TATATAT-TTC------------------CTTCAA--TTCGC-TTATTCTGTCAAAATACATCTGTAGAAGACCGTA-----CAACCGAG--------A---GTA---------------------------------A-GTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|8 : ACGTACATAATT-CAT----GTACACTC--TCTTTATTTA-A---------AAACGCA-TGTGGCTTACAT-TGA-GTCTATTCA-GAAT-GTATTC----ATGACAAAGAGTACTCTCAA-CACCGC-TAACCTTTATAAAATACGTCTTTCGAAGACAGTACATATCGGTCGAATACCTTATAACTCTG-TCGAAAACAACG------------TAAGAGCAA-GAATAGTTTTGGTCG-AAA--ACATAAATCGAAATATTGGTATAtacccccgtgattaa
gi|4 : tcattaaagatgcaataaggtaggaacaaatagaaaacgacgCTGATAAAATACATCTGTCGAAGACAGTACCTTTCGGTCGAA--------TACCGTA-TA-------ACT------------C--GGTC-GAGTACCGTTTCGGTCG-AAA--ACATAAATCGCAATATttcactgtgttaatactgagttcaatatttcttctaaacaatga
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 2 2222 11 1 33333 1111111 22222222 111111 55555555555555 2222 444444 111 11 11 2222222 111 77777777777777777777 111111 11 222222222 1 1111 111111 111 44444444444444444444 11 3333333333333333 111111 44444 2222222222222 333333 2222222 11 1111111111111111111111111111111111111111111 11
lowQualScore : 1 1 555 3 0 88 3 3333 33 0 0 2 00000 9999999 33333333 8 000000 3 333 0 1 33333333333333 1 0 3 3333 0 8 1 000000 000 8 00 00 6 0 8 1111111 1 777 3 77777777777777777777 999999 5 44 11 5 222222222 6 7 3 99 88 3 3 3 3 5 6 1111 999999 111 3 1 3 0 88888888888888888888 55555 2 22 7 4 0000000000000000 6 888 555555 55555 88 9999999999999 999 444444 0 8 4444444 5 5 777 999 11 1 1 0000000000000000000000000000000000000000000 8 11 0 1
lowQualScore : . . ... . . .. . .... .. . . . ..... ....... ........ . ...... . ... . . .............. . . . .... . . . ...... ... . .. .. . . . ....... . ... . .................... ...... . .. .. . ......... . . . .. .. . . . . . . .... ...... ... . . . . .................... ..... . .. . . ................ . ... ...... ..... .. ............. ... ...... . . ....... . . ... ... .. . . ........................................... . .. . .
lowQualScore : 0 0 000 3 7 11 2 8888 88 2 0 0 00000 0000000 00000000 0 222222 2 555 2 0 66666666666666 0 8 2 4444 8 0 0 444444 000 0 22 77 7 3 5 7777777 0 222 7 00000000000000000000 777777 7 44 44 7 999999999 7 5 5 22 88 2 2 7 3 2 7 3333 222222 777 8 0 8 6 22222222222222222222 88888 8 22 5 5 0000000000000000 2 888 000000 44444 11 1111111111111 666 111111 4 5 5555555 0 0 888 222 88 0 0 2222222222222222222222222222222222222222222 0 00 8 0
consensus : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCTGGCGTGTA----T--GGCAG---ATT--AAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-ATC--GT-AAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAACCGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAATAAATCACATTTTCTTGA-----ACGA------A---GTTTTTGCAATTCCACTAGTGTTCGNCGTTAAATATACAATAACAACAGACANACACCATCATA-A--AAACA---GT--AC--CTACAT-TAC-AAT-TCATATACATTC--TATTT------ATGTAN-TTTAAA-C-TT-TGTGACTAATATCGT---G---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANNTCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
Reference ( family-1907 ) : TGTGNTTGAAGNACGCGCAACGGTTAAACAAAAGTCCAATATACTGTT--TGGAA-ATGTATCTGGTGTGTA----T--GGCAG---NTT--AAGTA-ATGTGNNATGTATTATATAATGCGGAAACGTNTTCACTT-ATC--AT-AAAGATTCAT-GA-TAT-TANACAAA-GTACTTTATTCA-T-AACA-AAACNTAGATATA-ATTTCTGAATGAA-------TGTCGAATACCGTATCAATCAGTGNCGAAAACCGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACNTTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TAATTTCTGATT------TTTTT---ACAATAAATNACATTTTCTTG------ACGA------A---GTTTTTGCAATTCCGCTAGCGTTCGGCGTTAAATATACAATAACAACAGACANACACCATCATA-A--AAACA---GT--AC--CTACAT-TACAAAT-TCATATACATTC--TATTT------ATGTAN-TTTAAA-C-TN-TGTGACTAATATCGT---G---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAAANTCGNTNACCCTGATAAAATACGTCTGTCGAAGACAGTACC-T-TCGGTCGAAAACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATNGCAATATTGGTATA
gi|1 : TGTGCTTGAAGAACACACAA--GTTA--CAAA-GTG-AATGCGCTGTT--TGAAG-ATATATCTG-CATGTAGAATT--GGCAG---ATT--AAGTA-ATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATA--ATTAAAGATTCAT-AAATAT-TACGCAAAAGCACTTTATTCA-T-AACA-AAATGTAAGTACA-ATTCCTGAACGAG-------TATCGGATACCGTATCAATCAATGTCGAAAACCGTAC-AAG--CCATTTT-CTAATAACGTCGAA-----TACCGTATC-ACAGGAAATATACATTCT-AGTA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTCA-TGCGAAATACATTAAAACACATTGTATTAAACA-TT-TATTTTCTGATTATTTTTTTTTT---ACAATAAATCACGTTTTCTTG------ATGA------A---GTTTTTGCAATTTCACTAGTGTTCGTTGTTAAGTACACAATAACAACAGACACATACCATCATA-ATAAAACA---GT--AC--CTACATGTACAAAAATCGTATACATTC--TATTT------ATGTAA-TTTAAA-C-TTATGTGACTAATATTGT---G---TATATTCA-TA-TTTGTTTCATAAAAAATAATACCTTTAAATTCAGTAACCCTGATAAAATGCGTCTGTCGTATACAGTACC-TATCAGTCGAAAACTGTA-T-ACT---------------TAAGAGCG-GTACCGTCTCGGTCG-AAAT--CATAACTCGCAATATCGGTATA
gi|11 : ATAACAACGGA-AAACAT-ATCATA-A--AG-CA---GTGTACGTTTACATATACTA-T-GCAAATACATTA---A---------ATGCACCTTTAAA-T-GAGTTTGACTAATGTCGT---A---TATGTTCA-TA-TATATTTC--------------CTTCAA-TTCGCTTATTCTGTCAAAATACATCTGTAGAAGACCGTAC-------------AACCG-------------------------AGAGTAAGTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|12 : AATAACATCTGA-----ATCAACATA-A--AACTAAATGT--ATTTCTACAA-TACAAAT-------ACATTC---A---------ATGTAT-TTTAAA--------TAATTA-TATTGT---G---------CA-TA-TTTATTTCCTGAAATATA-T-CCTTCAATATTGCTTACGCTGTCAAAATGCATCTGTAGAATACCGTAC------------AAAC--------------------------AAGAGTGAGTATCGTGTCGTTCGAAAAA--CAT--ATAGCAATGTTGGTATtacccccgtgattaa
gi|2 : ACACAAGT----TACACTGTT--TGAAA-ATATATCTGGTATATA----T--GGTAGTGACTT--AATTACATGT
gi|2 : ttgtaattgaaaaacTA----T--GGCAG---TTT--AAGTA-ATGTAAAATGTATTATATAATGGGAAAATGTCTT------------T-AAAGATTCATTGA-AAT-TAAGCAAA-ACA-TTTATTCA-TTAACA-AAATATA-----A-ATTCCTGAATGAG-------TATCGAATACCGTATCAACCAATGACGAAAACCGTACCG-G--CCATTTTTC-AATAACGTCGAA-----AATCGTATC-ACAGGAAATTTATATTCG-AATA---------TATTG-AATCAATTCCATTGTTATTCAAAT--GTTTTA-TGCGAAATACATTAAAATACATTGTATTTAACA-TT-TTACTTCTGATT------TTTTT---ACAATAAATCACATTTTCTTGATGAAAACGA------A---GTTTTTGCAATTCCGCTTGTGTTCGTCGTTAAATACACAATAACAACAGACACACGCCAT-AT-----AAACA---GT--AC--CTACAT-----AAT-TCATATACATTC--TTTTT------ATGTAA-TTTAAA-CTTT-TGTAACTTATAT-AT-------TATATTCA-TA-TTTATTTCATGAAAAACGATACCTTTAAAGTCAGAAACCCTGATAAAATGCGTCTGTCAAAGACAGAATC-TCTCGGTCGGATACCGTATT-ACTCGGCCGAAAACA---TGAGAACGAGTACCGTTTCGGTctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|3 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgaTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTT--TAGAA-ATGTAT-----GTGTA----T--GGTAG---AT----AGTT-A---GTTATGTATTATATA-TGCAGAAACGTATTCACTT-ATCCAGT-AAAAATACATAGT-TAT-TACACAAATGTATCTTATTTAAC-AACC-AAACTTAAATGCA-ATTTACGGATGAA-------TGTCCAATAAGGTATCAATTAGTG----AAAC---ACTG-GTCCCATT---------ACGTCGAA-----TACCGTATC-ATA--AAATATACCTTCG-AATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATAT--CTTTTA-CGTAAAATACAATAAAA-ATATTGTATTCGACA-TT-TAATTTCTGATT------TTTTT---ACAA-ACATAATATGTTATTG------ATGAAAGCACA---GTTTCTGCAA-------AGCAATCA--GTTTAATATATAATGACAACAGACAAACAC--TCAC-----ACACG---GA--TC--CTATAT-----AAT-TCATATAAACTCCATATCTACATACATGTAT-ATTAAA-T-AT-TGTGACTAAAAT-GT---GTAATATATTCATTT-TTTATTTC-T--AGAATAG
gi|4 : ccaatatcagatattatttgacT-ATAGATT-----A-TATCTATACAA--GT-CTTTGTTCT-T-AACA-AAGC--AGGTATACGCTACTG-ATAAAATACATCTGTCGAAGACAGTACCTTTCGGT--CGAATACCGTAT-A-A--C-----T-C-G-----GTCGAG-----TACCGTTTCGGTCGAAAACATAAA-TCGCAATA---------Taaaacc
gi|4 : cattttttttctataaagtattttttcttaacaaggaatCTGATAAAATACATCTGTCGAAGACAGTACCTT-TCGGTCGAATACCGTA-TAACT---------------C--GGTCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTCGTtcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|5 : cattttttttctataaagtattttttcttaacaaggaattatagattatatctatacaagtctttgttcttaacaaagcaggtatacgctaTGTGTTTAAAGTACATACAA-GATTGAGATACAGTCCA-CGTATCGTTCCTCGAATATACAT---GTGTATG----TTAGGCAG---ATAGAAAGGA-AAATATAA-GTATTACA--ATGCAGAAACATCTTTATTC-ATC--C----AG--TTAT-TA-T-T-TACACAA------CTTATTCA-T-CATATAAGACTAATTATA-AATTTTAGATAAA-------------GTACCAT-TCTAT---------ACATTTTAC-------CATTGT---------GTCAAA-----AAACTTATC-TTA--AAATACGTATTCG-ATCA----------AT-G-ATACAATTGCATTGTAA--AAAATAGGTTTTATCTTGA--T----T------CCTTATAGTCAATA-TT-G---TTATGATT----------------AGCAAGTCAC----TGGTG------A-GA------ACACACTTTTACAACACCACTAGTGTTTGGTGTTAAA-ATGCAATAACAATAGACA-----------A-A--AA--A---GT--AG--GTCCAG-TAT-AGT-TCATATATTTTC--AATAT------ACATAgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|6 : ctagtattaaaaatatacgatTAGATATA-ATTTCTGTATGAA-------TGTCGAATACCGTATCAATCAGTGAAGAAACTTGTTC---C--CCATT---------ATGTTGAATGGCCTACCGTATC-ATA--AAATACTCCTTCG-AATA---------TTTTGAAAACTATTGCATT-------AA---------------------AATAAAA-AAA----ATTCAACA-TCATAGTTTC-GACT------TTTTG---AC
gi|6 : ATATCCGTTC--CATGT------ATATAT-TTTAAA-T-TG-TGTGA--AAAATCGTTTTGACCTATATTCA-TT-TTTAGTTCA-GAAAGAttttcaaaatcgtagtttcaacttctcaacatcgtagtttcgacttttcatcatcatagtttcaactttatttaatttaaaaaacaagccacaatggtccccaacataatatatccgttccatgtatatattttaaattgtgtgaaaaatcgttttgacctatattcatttttagttcagaaagaaa
gi|7 : tagatataatttctgtatgaatgtcgaataccgtatcaatcagtgaagaaacttgttccccattatgttgaatggcctaccgtatcataaaatactccttcgaatattttgaaaactattgcattaaaataaaaaaaattcaacatcatagtttcgactttttgacttttcaaaatcgtagtttcaacttctcaacatcgtagtttcgacttttcatcatcatagtttcaactttatttaatttaaaaaacaagccacaatggtccccaacataatATTTT-C-AACAACGTAGAA------ACCGTATC-ATTGGAAATATATATTTG-AATT---------TATTA-AAACTATTGCATTGTTATTCCATT--GTTTTA-TGCAAAATACAATAAAA-ACATTGTATT-AACATTT-TATTTTTTAATT------TTTTTTTAAAAATCAATGACATTTACTTGAAA---ACGC------A---GTTATTGCAATTCTACTGGTGTTCGGTGTTAAAAATACAATAACAACAGACAGACA--A-CATA-A--AAACA---GC--AC--CTATAT-----AAT-GCATATACATTA--TA-TT------ATGTAT-ATTAAATT-TT-TGTGACTATTATCGT---G---TATTTTCG-TA-TTTATTTCATGAAAAATAaa
gi|8 : gcatCATTAAAGATGCAATAA-----GGTAGGAACAA--ATAGA--AAACG---ACG-AC--GTACAT-----AAT-TCATGTACACTC--TCTTT------ATTTAA----AAA-CGCA-TGTGGCTTACATTGA---G---TCTATTCA-GAATGTATT-CATGACAAAGAGTACTCTCAACACCGCTAACCTTTATAAAATACGTCTTTCGAAGACAGTACA-TATCGGTCGAATACCTTA-TAACTCTGTCGAAAACAACGTAAGAGCAAGAATAGTTTTGGTCG-AAAA--CATAAATCGAAATATTGGTATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 44444 222222222 11 111 666666666666666 2222 444444 111 11 2222222 77777777777777777777777777777777777 111111 11 2222222222 1 111111 111 1111 11111 5555555555 111 111 555555555555555555555555555555555555555555555 111 2222222222222 33333333 1111111111 0000000000000000000000000000000000000000000 11
lowQualScore : 1 11 3 7 88 3 666 33 0 0 22222 555555555 11 8 777 8 6 44 66 3 3 0 222222222222222 1 0 3 3333 0 8 000000 000 8 00 7 6 0 1 1111111 2 00000000000000000000000000000000000 999999 5 44 0 5 4444444444 6 7 3 99 999999 3 3 3 5 6 8888 999999 111 3333 1 66666 5555555555 3 111 1 9999999 1 77 000 5 333333333333333333333333333333333333333333333 000 9999999999999 999 22222222 0 9999999999 5 5 777 999 99 1 7777777777777777777777777777777777777777777 8 11 0
lowQualScore : . .. . . .. . ... .. . . ..... ......... .. . ... . . .. .. . . . ............... . . . .... . . ...... ... . .. . . . . ....... . ................................... ...... . .. . . .......... . . . .. ...... . . . . . .... ...... ... .... . ..... .......... . ... . ....... . .. ... . ............................................. ... ............. ... ........ . .......... . . ... ... .. . ........................................... . .. .
lowQualScore : 0 77 3 3 11 2 888 88 2 0 00000 000000000 00 0 000 0 0 55 55 2 2 2 222222222222222 0 8 2 4444 8 0 000000 000 0 22 8 7 3 0 7777777 5 11111111111111111111111111111111111 777777 7 44 4 7 6666666666 7 5 5 22 333333 2 7 3 2 7 5555 222222 777 3333 7 77777 0000000000 3 777 7 5555555 0 99 000 1 111111111111111111111111111111111111111111111 888 1111111111111 666 11111111 4 2222222222 0 0 888 222 88 0 2222222222222222222222222222222222222222222 0 00 8
consensus : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCTG-CGTGTA----T----GGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC----ATC---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACATTTTC-----TTGA----AA---CGNA---GTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGACA-ACAC-ATCATA-A--AAACG---GT--AC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
Reference ( family-1907 ) : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCTGGCGTGTA----T----GGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC----ATC--GTAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACATTTTC-----TTG-----AA---CGAA---GTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGACANACACCATCATA-A--AAACA---GT--AC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANNTCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
gi|1 : TGTGCTTGAAGAACACACAA-G-TTA--CAAA-GTG-AATGCGCTGTT--TGAAG-ATATATCTG-CATGTAGAATT----GGCA--GA-T--TAAGTA-ATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATAAT----TAAAGATTCAT-AAATAT-TACGCAAAAGCACTTTATTCA-T-AACA-AAATGTAAGTACA-ATTCCTGAACGAG-------TATCGGATACCGTATCAATCAATGTCGAAAAC-CGTAC-AAG--CCATTTT-CTAATAACGTCGAA-----TACCGTATC-ACAGGAAATATACATTCT-AGTA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTCA-TGCGAAATACATTAAAACACATTGTATTAAACA-TT-TATTTTCTGATTATTTTTTTTTT---ACAAT---AAATCACGTTTTC-----TTG-----A----TGAA---GTTTTTGCAATTT--CAC--TAGTGTTCGTTGTTA---AGTACACAATAACAACAGACACATACCATCATA-ATAAAACA---GT--AC--CT-ACATGTACAAAAATCGTATACATTC--TATTT------ATGTAA-TTTAAA-C---TTATGTGACTAATATTG---TG---TATATTCA-TA-TTTGTTTCATAAAAAATAATACCTTTAAATTCAGTAACCCTGATAAAATGCGTCTGTCGTATACAGTACC-TATCAGTCGAAAACTGTA-T-ACT---------------TAAGAGCG-GTACCGTCTCGGTCG-AAAT--CATAACTCGCAATATCGGTATA
gi|11 : ATAACAACGGA-AAACAT-ATCATA-A--AG-CA---GTGTACGTTT-ACATATACTAT--GCAAATACATTA---A---------ATGCACCTTTAAA-TGAGTT-TG--ACTAATGTCG---TA---TATGTTCA-TA-TATATTTC--------------CTTCAAT-TCGCTTATTCTGTCAAAATACATCTGTAGAAGACCGTAC-------------AACCG-------------------------AGAGTAAGTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|12 : AATAACATCTGA-----ATCAACATA-A--AACTAAATGT--AT--TT----C-TACAAT--ACAAATACATTC---A---------ATGTAT-TTTAAA----------TAATTA-TATTG---TG---------CA-TA-TTTATTTCCTGAAATATA-T-CCTTCAATATTGCTTACGCTGTCAAAATGCATCTGTAGAATACCGTAC------------AAAC--------------------------AAGAGTGAGTATCGTGTCGTTCGAAAAA--CAT--ATAGCAATGTTGGTATtacccccgtgattaa
gi|2 : ACACAAGT----TACACTGTT--TGAAA-ATATATCTGGTATATA----T----GGTAGTGACT--TAATTACATGT
gi|2 : ttgtaattgaaaaacTA----T----GGCA--GT-T--TAAGTA-ATGTAAAATGTATTATATAATGGGAAAATGTCTT---------------TAAAGATTCATTGA-AAT-TAAGCAAA-ACA-TTTATTCA-TTAACA-AAATATAA------ATTCCTGAATGAG-------TATCGAATACCGTATCAACCAATGACGAAAAC-CGTACCG-G--CCATTTTTC-AATAACGTCGAA-----AATCGTATC-ACAGGAAATTTATATTCG-AATA---------TATTG-AATCAATTCCATTGTTATTCAAAT--GTTTTA-TGCGAAATACATTAAAATACATTGTATTTAACA-TT-TTACTTCTGATT------TTTTT---ACAAT---AAATCACATTTTC-----TTGATGAAAA---CGAA---GTTTTTGCAATTC--CGC--TTGTGTTCGTCGTTA---AATACACAATAACAACAGACACACGCCAT-AT-----AAACA---GT--AC--CT-ACAT----AAT--TCATATACATTC--TTTTT------ATGTAA-TTTAAA-CT--TT-TGTAACTTATAT-A---T----TATATTCA-TA-TTTATTTCATGAAAAACGATACCTTTAAAGTCAGAAACCCTGATAAAATGCGTCTGTCAAAGACAGAATC-TCTCGGTCGGATACCGTATT-ACTCGGCCGAAAACA---TGAGAACGAGTACCGTTTCGGTctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|3 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgaTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTT--TAGAA-ATGTAT-----GTGTA----T----GGTA--GA-T----AGTT-A-GT-TA-TGTATTATATA-TGCAGAAACGTATTCACTT----ATCCAGTAAAAATACATAGT-TAT-TACACAAATGTATCTTATTTAAC-AACC-AAACTTAAATGCA-ATTTACGGATGAA-------TGTCCAATAAGGTATCAATTAGTG----AAAC----ACTG-GTCCCATT---------ACGTCGAA-----TACCGTATC-ATA--AAATATACCTTCG-AATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATAT--CTTTTA-CGTAAAATACAATAAAA-ATATTGTATTCGACA-TT-TAATTTCTGATT------TTTTT---ACAA----ACATAATATGTTA-----TTGATGAAAG---CACA---GTTTCTGCAA-----------AGCAATCA--GTTT---AATATATAATGACAACAGACAAACAC--TCAC-----ACACG---GA--TC--CT-A----TATAAT--TCATATAAACTCCATATCTACATACATGTAT-ATTAAA-T---AT-TGTGACTAAAAT-G---TGTAATATATTCATTT-TTTATTTC-T--AGAATAG
gi|4 : ccaatatcagatattatttgacTATAGATT-----A-TATCTATACAA--GT-CTTTGTTCT-T-AACA-AAGC--AGGTATACGCTACT-GATAAAATACATCTGTCGAAGACAGTACCTTTCGGT--CGAATAC-CGTAT-A-A--C-----T-C-G-----GTCGAG-----TACCGTTTCGGTCGAAAACATAAA-TCGCAATA---------Taaaacc
gi|4 : cattttttttctataaagtattttttcttaacaaggaatCGCTA---CTGATAAAATACATCTGTCGAAGACAGTACCTT-TCGGTCGAATACCGTA-TAACT---------------C--GGTCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTCGTtcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|5 : cattttttttctataaagtattttttcttaacaaggaattatagattatatctatacaagtctttgttcttaacaaagcaggtataTGTGTTTAAAGTACATACAA-GATTGAGATACAGTCC-ACGTATCGTTCCTCGAATATACAT-----GTGTA----TGTTAGGCA--GA-TAGAAAGGA-AAATATAA-GTAT--TACAATGCAGAAACATCTTTATTC----ATC-----CAG--TTAT-TA-T-T-TACACAA------CTTATTCA-T-CATATAAGACTAATTATA-AATTTTAGATAAA------------------GTACCATTCTATA-C----AT-TTTA-------CCATTGT---------GTCAAA-----AAACTTATC-TTA--AAATACGTATTCG--AT----------CAATG-ATACAATTGCATTGTAA--AAAATAGGTTTTATCTTG--AT----T------CCTTATAGTCAATA-TT----GTTATGATT----------------AGC---AAGTCAC----TG-----GTG-----A-----GAACACACTTTTACAACAC--CAC--TAGTGTTTGGTGTTA---AA-ATGCAATAACAATAGACA-----------A-A--AA--A---GT--AG--GT-CCAG-TATAGT--TCATATATTTTC--AATAT------ACATAgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|6 : ctagtattaaaaatatacgatTAGATATA-ATTTCTGTATGAA-------TGTCGAATACCGTATCAATCAGTG-AAGAAACTTGTTC---C--CCATT---------ATGTTGAATGGCCTACCGTATC-ATA--AAATACTCCTTCG-AATA---------TTTTGAAAACTATTGCATT-------AA---------------------AATAAAA-AAA----ATTCAACA-TCATAGTTTC-GACT------TTTTG---ACTTTTCAAAATCGTAGTTTCAACTTCTC-----AACATCGTA---GTTTCGACTTTTCATCATCATAGT-TTCAACTTTATTTAATTTA----AAAAACAAGC---CAC------------AATG---GT--CC--CCAACAT----AAT----ATATCCGTTC--CATGT------ATATAT-TTTAAA-T---TG-TGTGA--AAAATCGTTTTGACCTATATTCA-TT-TTTAGTTCA-GAAAGA
gi|7 : ATTTT-C-AACAACGTAGAA------ACCGTATC-ATTGGAAATATATATTTG-AATT---------TATTA-AAACTATTGCATTGTTATTCCATT--GTTTTA-TGCAAAATACAATAAAA-ACATTGTATT-AACATTT-TATTTTTTAATT------TTTTTTTAAAAAT---CAATGACATTTAC-----TTGAA---AA---CGCA---GTTATTGCAATTC--TAC--TGGTGTTCGGTGTTA---AAAATACAATAACAACAGACAGACA--A-CATA-A--AAACA---GC--AC--CT-A----TATAAT--GCATATACATTA--TA-TT------ATGTAT-ATTAAATT---TT-TGTGACTATTATCG---TG---TATTTTCG-TA-TTTATTTCATGAAAAATAaa
gi|8 : gcatCATTA---AAGATGCAATAA-----GGTAGGAACAA--ATAGA--AAACG---ACG-AC--GT-ACAT----AAT--TCATGTACACTC--TCTTT------ATTTAA----AAA-C---GCATGTGGCTTACATTG---AG---TCTATTCA-GAATGTATT-CATGACAAAGAGTACTCTCAACACCGCTAACCTTTATAAAATACGTCTTTCGAAGACAGTACA-TATCGGTCGAATACCTTA-TAACTCTGTCGAAAACAACGTAAGAGCAAGAATAGTTTTGGTCG-AAAA--CATAAATCGAAATATTGGTATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 111111 1111 11 111 44444444444444 2222 444444 111 11 2222222 77777777777777777777777777777777777 111111 11 2222222222 1 111111 111 1111 111111111 444444444 111 44444444444444444444444444444444444444444444444 111 2222222222222 33333333 1111111111 11 0000000000000000000000000000000000000000000 11
lowQualScore : 1 11 3 7 88 3 666 33 0 0 888888 7777 11 8 777 8 6 44 66 3 3 0 11111111111111 0 3 3333 0 8 000000 000 8 00 7 6 0 1 1111111 2 00000000000000000000000000000000000 999999 5 44 0 5 4444444444 6 7 3 99 999999 3 3 3 5 6 8888 999999 111 3333 999999999 000000000 1 1 9999999 1 77 000 5 88888888888888888888888888888888888888888888888 000 9999999999999 999 22222222 0 9999999999 5 5 777 999 00 1 7777777777777777777777777777777777777777777 8 11 0
lowQualScore : . .. . . .. . ... .. . . ...... .... .. . ... . . .. .. . . . .............. . . .... . . ...... ... . .. . . . . ....... . ................................... ...... . .. . . .......... . . . .. ...... . . . . . .... ...... ... .... ......... ......... . . ....... . .. ... . ............................................... ... ............. ... ........ . .......... . . ... ... .. . ........................................... . .. .
lowQualScore : 0 77 3 3 11 2 888 88 2 0 222222 0000 00 0 000 0 0 55 55 2 2 2 55555555555555 8 2 4444 8 0 000000 000 0 22 8 7 3 0 7777777 5 11111111111111111111111111111111111 777777 7 44 4 7 6666666666 7 5 5 22 333333 2 7 3 2 7 5555 222222 777 3333 000000000 000000000 0 7 5555555 0 99 000 1 44444444444444444444444444444444444444444444444 888 1111111111111 666 11111111 4 2222222222 0 0 888 222 00 0 2222222222222222222222222222222222222222222 0 00 8
consensus : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCTTGA---A-AA-CGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
Reference ( family-1907 ) : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GCGTGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCTTG----A-AA-CGNAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
gi|1 : TGTGCTTGAAGAACACACAA-G-TTA--CAAA-GTG-AATGCGCTGTT--TGAAG-ATATATCT-GCATGTAGAATTGGCA--GA-T--TAAGTA-ATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATAAT---TAAAGATTCAT-AAATAT-TACGCAAAAGCACTTTATTCA-T-AACA-AAATGTAAGTACA-ATTCCTGAACGAG-------TATCGGATACCGTATCAATCAATGTCGAAAAC-CGTAC-AAG--CCATTTT-CTAATAACGTCGAA-----TACCGTATC-ACAGGAAATATACATTCT-AGTA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTCA-TGCGAAATACATTAAAACACATTGTATTAAACA-TT-TATTTTCTGATTATTTTTTTTTT---ACAAT---AAATCACG-TT-----TTCTTG----A----TGAAGTTTTTGCAATTT--CAC--TAGTGTTCGTTGTTA---AGTACACAATAACAACAGA--C-ACATACCATCATAATAA--A--ACA-GTAC--CT-ACATGTACAAAAATCGTATACATTC--TATTT------ATGTAA-TTTAAA-C---TTATGTGACTAATATTG---TG---TATATTCA-TA-TTTGTTTCATAAAAAATAATACCTTTAAATTCAGTAACCCTGATAAAATGCGTCTGTCGTATACAGTACC-TATCAGTCGAAAACTGTA-T-ACT---------------TAAGAGCG-GTACCGTCTCGGTCG-AAAT--CATAACTCGCAATATCGGTATA
gi|11 : ATAACAACGGA--A-A-ACAT-ATCATAA--A--G--CAGTGTACGTTT-ACATATACTAT--GCAAATACATTA---A---------ATGCACCTTTAAA-TGAGTT-TG--ACTAATGTCG---TA---TATGTTCA-TA-TATATTTC--------------CTTCAAT-TCGCTTATTCTGTCAAAATACATCTGTAGAAGACCGTAC-------------AACCG-------------------------AGAGTAAGTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|12 : AATAACATCTGAATC-A-ACAT-A----AA--ACTA--AAT-GTAT--TT----C-TACAAT--ACAAATACATTC---A---------ATGTAT-TTTAAA----------TAATTA-TATTG---TG---------CA-TA-TTTATTTCCTGAAATATA-T-CCTTCAATATTGCTTACGCTGTCAAAATGCATCTGTAGAATACCGTAC------------AAAC--------------------------AAGAGTGAGTATCGTGTCGTTCGAAAAA--CAT--ATAGCAATGTTGGTATtacccccgtgattaa
gi|2 : ACACAAGT----TACACTGTT--TGAAA-ATATATCTGGTATATA----TGGTAGTGACT--TAATTACATGT
gi|2 : ttgtaattgaaaaacTA----TGGCA--GT-T--TAAGTA-ATGTAAAATGTATTATATAATGGGAAAATGTCTT--------------TAAAGATTCATTGA-AAT-TAAGCAAA-ACA-TTTATTCA-TTAACA-AAATATAA------ATTCCTGAATGAG-------TATCGAATACCGTATCAACCAATGACGAAAAC-CGTACCG-G--CCATTTTTC-AATAACGTCGAA-----AATCGTATC-ACAGGAAATTTATATTCG-AATA---------TATTG-AATCAATTCCATTGTTATTCAAAT--GTTTTA-TGCGAAATACATTAAAATACATTGTATTTAACA-TT-TTACTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCTTGATGAA-AA-CGAAGTTTTTGCAATTC--CGC--TTGTGTTCGTCGTTA---AATACACAATAACAACAGA--C---ACAC-GCCATAT--A--A--ACA-GTAC--CT-ACAT----AAT--TCATATACATTC--TTTTT------ATGTAA-TTTAAA-CT--TT-TGTAACTTATAT-A---T----TATATTCA-TA-TTTATTTCATGAAAAACGATACCTTTAAAGTCAGAAACCCTGATAAAATGCGTCTGTCAAAGACAGAATC-TCTCGGTCGGATACCGTATT-ACTCGGCCGAAAACA---TGAGAACGAGTACCGTTTCGGTctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|3 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgaTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTT--TAGAA-ATGTAT-----GTGTA----TGGTA--GA-T----AGTT-A-GT-TA-TGTATTATATA-TGCAGAAACGTATTCACTT-AT--CCAGTAAAAATACATAGT-TAT-TACACAAATGTATCTTATTTAAC-AACC-AAACTTAAATGCA-ATTTACGGATGAA-------TGTCCAATAAGGTATCAATTAGTG----AAAC----ACTG-GTCCCATT---------ACGTCGAA-----TACCGTATC-ATA--AAATATACCTTCG-AATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATAT--CTTTTA-CGTAAAATACAATAAAA-ATATTGTATTCGACA-TT-TAATTTCTGATT------TTTTT---ACAA----ACATAATA-TG-----TTATTGATGAA-AG-CACAGTTTCTGCAA-----------AGCAATCA--GTTT---AATATATAATGACAACAGA--CAA-ACAC--TCAC----A--C--ACG-GATC--CT-A----TATAAT--TCATATAAACTCCATATCTACATACATGTAT-ATTAAA-T---AT-TGTGACTAAAAT-G---TGTAATATATTCATTT-TTTATTTC-T--AGAATAG
gi|4 : ccaatatcagatattatttgac---TATAGATT-----A-TATCTATACAA--GT-CTTTGTTCT-T-AACA-AAGC--AGGTATACGCTACT-GATAAAATACATCTGTCGAAGACAGTACCTTTCGGT--CGAATAC-CGTAT-A-A--C-----T-C-G-----GTCGAG-----TACCGTTTCGGTCGAAAACATAAA-TCGCAATA---------Taaaacc
gi|4 : cattttttttctataaagtattttttcttaacaaggaatCGCTA---CTGATAAAATACATCTGTCGAAGACAGTACCTT-TCGGTCGAATACCGTA-TAACT---------------C--GGTCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTCGTtcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|5 : cattttttttctataaagtattttttcttaacaaggaattatagattatatctatacaagtctttgttcttaacaaagcaggtataTGTGTTTAAAGTACATACAA-GATTGAGATACAGTCC-ACGTATCGTTCCTCGAATATACATGT-GTATGTT----AGGCA--GA-TAGAAAGGA-AAATATAA-GTAT--TACAATGCAGAAACATCTTTATTC-AT--C---CAG----TTAT-TA-T-T-TACACAA------CTTATTCA-T-CATATAAGACTAATTATA-AATTTTAGATAAA------------------GTACCATTCTATA-C----AT-TTTA-------CCATTGT---------GTCAAA-----AAACTTATC-TTA--AAATACGTATTCG--AT----------CAATG-ATACAATTGCATTGTAA--AAAATAGGTTTTATCTTG--AT----T------CCTTATAGTCAATA-TT----GTTATGATT----------------AGC---AAGTCAC----------TGGTG----AGAA-CACA-CTTTTACAACAC--CAC--TAGTGTTTGGTGTTA---AA-ATGCAATAACAATAGA--C-A-A---------AA--A--A------GTAG--GT-CCAG-TATAGT--TCATATATTTTC--AATAT------ACATAgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|6 : ctagtattaaaaatatacgatTAGATATA-ATTTCTGTATGAA-------TGTCGAATACCGTATCAATCAGTG-AAGAAACTTGTTC---C--CCATT---------ATGTTGAATGGCCTACCGTATC-ATA--AAATACTCCTTCG-AATA---------TTTTGAAAACTATTGCATT-------AA---------------------AATAAAA-AAA----ATTCAACA-TCATAGTTTC-GACT------TTTTG---ACTTTTCAAAATCGTAGTTTCAACTTCTCA----A-CATCGTAGTTTCGACTTTTCATCATCATAGT-TTCAACTTTATTTAATTTA----AAAAACAAG--C----CAC-------------A--ATG-GTCC--CCAACAT----AAT----ATATCCGTTC--CATGT------ATATAT-TTTAAA-T---TG-TGTGA--AAAATCGTTTTGACCTATATTCA-TT-TTTAGTTCA-GAAAGA
gi|7 : ATTTT-C-AACAACGTAGAA------ACCGTATC-ATTGGAAATATATATTTG-AATT---------TATTA-AAACTATTGCATTGTTATTCCATT--GTTTTA-TGCAAAATACAATAAAA-ACATTGTATT-AACATTT-TATTTTTTAATT------TTTTTTTAAAAAT---CAATGACA-TT-----TACTTGA---A-AA-CGCAGTTATTGCAATTC--TAC--TGGTGTTCGGTGTTA---AAAATACAATAACAACAGA--C-A-G-AC-AACATAA--A--A--ACA-GCAC--CT-A----TATAAT--GCATATACATTA--TA-TT------ATGTAT-ATTAAATT---TT-TGTGACTATTATCG---TG---TATTTTCG-TA-TTTATTTCATGAAAAATAaa
gi|8 : gcatCATTA---AAGATGCAATAA-GGTAGG----A-ACAA-AT-AGAA--A--ACGACG---AC--GT-ACAT----AAT--TCATGTACACTC--TCTTT------ATTTAA----AAA-C---GCATGTGGCTTACATTG---AG---TCTATTCA-GAATGTATT-CATGACAAAGAGTACTCTCAACACCGCTAACCTTTATAAAATACGTCTTTCGAAGACAGTACA-TATCGGTCGAATACCTTA-TAACTCTGTCGAAAACAACGTAAGAGCAAGAATAGTTTTGGTCG-AAAA--CATAAATCGAAATATTGGTATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 111 1111 11 111 44444444444444 2222 444444 111 11 2222222 77777777777777777777777777777777777 111111 11 2222222222 1 111111 111 1111 2222222222222222 111 44444444444444444444444444444444444444444444444 111 2222222222222 33333333 1111111111 11 0000000000000000000000000000000000000000000 11
lowQualScore : 1 11 3 7 88 3 666 33 0 0 555 0 7777 11 8 777 8 6 44 66 3 3 0 11111111111111 0 3 3333 0 8 000000 000 8 00 7 6 0 1 1111111 2 00000000000000000000000000000000000 999999 5 44 0 5 4444444444 6 7 3 99 999999 3 3 3 5 6 8888 999999 111 3333 6666666666666666 5 1 1 1 9999999 1 77 000 5 88888888888888888888888888888888888888888888888 000 9999999999999 999 22222222 0 9999999999 5 5 777 999 00 1 7777777777777777777777777777777777777777777 8 11 0
lowQualScore : . .. . . .. . ... .. . . ... . .... .. . ... . . .. .. . . . .............. . . .... . . ...... ... . .. . . . . ....... . ................................... ...... . .. . . .......... . . . .. ...... . . . . . .... ...... ... .... ................ . . . . ....... . .. ... . ............................................... ... ............. ... ........ . .......... . . ... ... .. . ........................................... . .. .
lowQualScore : 0 77 3 3 11 2 888 88 2 0 888 8 0000 00 0 000 0 0 55 55 2 2 2 55555555555555 8 2 4444 8 0 000000 000 0 22 8 7 3 0 7777777 5 11111111111111111111111111111111111 777777 7 44 4 7 6666666666 7 5 5 22 333333 2 7 3 2 7 5555 222222 777 3333 0000000000000000 7 8 0 7 5555555 0 99 000 1 44444444444444444444444444444444444444444444444 888 1111111111111 666 11111111 4 2222222222 0 0 888 222 00 0 2222222222222222222222222222222222222222222 0 00 8
consensus : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCT---TGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
Reference ( family-1907 ) : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCT---TGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
gi|1 : TGTGCTTGAAGAACACACAA-G-TTA--CAAA-GTG-AATGCGCTGTT--TGAAG-ATATATCT-GCATGTAGAATTGGCA--GA-T--TAAGTA-ATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATAAT---TAAAGATTCAT-AAATAT-TACGCAAAAGCACTTTATTCA-T-AACA-AAATGTAAGTACA-ATTCCTGAACGAG-------TATCGGATACCGTATCAATCAATGTCGAAAAC-CGTAC-AAG--CCATTTT-CTAATAACGTCGAA-----TACCGTATC-ACAGGAAATATACATTCT-AGTA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTCA-TGCGAAATACATTAAAACACATTGTATTAAACA-TT-TATTTTCTGATTATTTTTTTTTT---ACAAT---AAATCACG-TT-----TTCT---TGA---TGAAGTTTTTGCAATTT--CAC--TAGTGTTCGTTGTTA---AGTACACAATAACAACAGA--C-ACATACCATCATAATAA--A--ACA-GTAC--CT-ACATGTACAAAAATCGTATACATTC--TATTT------ATGTAA-TTTAAA-C---TTATGTGACTAATATTG---TG---TATATTCA-TA-TTTGTTTCATAAAAAATAATACCTTTAAATTCAGTAACCCTGATAAAATGCGTCTGTCGTATACAGTACC-TATCAGTCGAAAACTGTA-T-ACT---------------TAAGAGCG-GTACCGTCTCGGTCG-AAAT--CATAACTCGCAATATCGGTATA
gi|11 : ATAACAACGGA--A-A-ACAT-ATCATAA--A--G--CAGTGTACGTTT-ACATATACTAT--GCAAATACATTA---A---------ATGCACCTTTAAA-TGAGTT-TG--ACTAATGTCG---TA---TATGTTCA-TA-TATATTTC--------------CTTCAAT-TCGCTTATTCTGTCAAAATACATCTGTAGAAGACCGTAC-------------AACCG-------------------------AGAGTAAGTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|12 : AATAACATCTGAATC-A-ACAT-A----AA--ACTA--AAT-GTAT--TT----C-TACAAT--ACAAATACATTC---A---------ATGTAT-TTTAAA----------TAATTA-TATTG---TG---------CA-TA-TTTATTTCCTGAAATATA-T-CCTTCAATATTGCTTACGCTGTCAAAATGCATCTGTAGAATACCGTAC------------AAAC--------------------------AAGAGTGAGTATCGTGTCGTTCGAAAAA--CAT--ATAGCAATGTTGGTATtacccccgtgattaa
gi|2 : ACACAAGT----TACACTGTT--TGAAA-ATATATCTGGTATATA----TGGTAGTGACT--TAATTACATGT
gi|2 : ttgtaattgaaaaacTA----TGGCA--GT-T--TAAGTA-ATGTAAAATGTATTATATAATGGGAAAATGTCTT--------------TAAAGATTCATTGA-AAT-TAAGCAAA-ACA-TTTATTCA-TTAACA-AAATATAA------ATTCCTGAATGAG-------TATCGAATACCGTATCAACCAATGACGAAAAC-CGTACCG-G--CCATTTTTC-AATAACGTCGAA-----AATCGTATC-ACAGGAAATTTATATTCG-AATA---------TATTG-AATCAATTCCATTGTTATTCAAAT--GTTTTA-TGCGAAATACATTAAAATACATTGTATTTAACA-TT-TTACTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCTTGATGAAAACGAAGTTTTTGCAATTC--CGC--TTGTGTTCGTCGTTA---AATACACAATAACAACAGA--C---ACAC-GCCATAT--A--A--ACA-GTAC--CT-ACAT----AAT--TCATATACATTC--TTTTT------ATGTAA-TTTAAA-CT--TT-TGTAACTTATAT-A---T----TATATTCA-TA-TTTATTTCATGAAAAACGATACCTTTAAAGTCAGAAACCCTGATAAAATGCGTCTGTCAAAGACAGAATC-TCTCGGTCGGATACCGTATT-ACTCGGCCGAAAACA---TGAGAACGAGTACCGTTTCGGTctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|3 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgaTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTT--TAGAA-ATGTAT-----GTGTA----TGGTA--GA-T----AGTT-A-GT-TA-TGTATTATATA-TGCAGAAACGTATTCACTT-AT--CCAGTAAAAATACATAGT-TAT-TACACAAATGTATCTTATTTAAC-AACC-AAACTTAAATGCA-ATTTACGGATGAA-------TGTCCAATAAGGTATCAATTAGTG----AAAC----ACTG-GTCCCATT---------ACGTCGAA-----TACCGTATC-ATA--AAATATACCTTCG-AATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATAT--CTTTTA-CGTAAAATACAATAAAA-ATATTGTATTCGACA-TT-TAATTTCTGATT------TTTTT---ACAA----ACATAATA-TG-----TTATTGATGAAAGCACAGTTTCTGCAA-----------AGCAATCA--GTTT---AATATATAATGACAACAGA--CAA-ACAC--TCAC----A--C--ACG-GATC--CT-A----TATAAT--TCATATAAACTCCATATCTACATACATGTAT-ATTAAA-T---AT-TGTGACTAAAAT-G---TGTAATATATTCATTT-TTTATTTC-T--AGAATAG
gi|4 : ccaatatcagatattatttgac---TATAGATT-----A-TATCTATACAA--GT-CTTTGTTCT-T-AACA-AAGC--AGGTATACGCTACT-GATAAAATACATCTGTCGAAGACAGTACCTTTCGGT--CGAATAC-CGTAT-A-A--C-----T-C-G-----GTCGAG-----TACCGTTTCGGTCGAAAACATAAA-TCGCAATA---------Taaaacc
gi|4 : cattttttttctataaagtattttttcttaacaaggaatCGCTA---CTGATAAAATACATCTGTCGAAGACAGTACCTT-TCGGTCGAATACCGTA-TAACT---------------C--GGTCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTCGTtcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|5 : cattttttttctataaagtattttttcttaacaaggaattatagattatatctatacaagtctttgttcttaacaaagcaggtataTGTGTTTAAAGTACATACAA-GATTGAGATACAGTCC-ACGTATCGTTCCTCGAATATACATGT-GTATGTT----AGGCA--GA-TAGAAAGGA-AAATATAA-GTAT--TACAATGCAGAAACATCTTTATTC-AT--C---CAG----TTAT-TA-T-T-TACACAA------CTTATTCA-T-CATATAAGACTAATTATA-AATTTTAGATAAA------------------GTACCATTCTATA-C----AT-TTTA-------CCATTGT---------GTCAAA-----AAACTTATC-TTA--AAATACGTATTCG--AT----------CAATG-ATACAATTGCATTGTAA--AAAATAGGTTTTATCTTG--AT----T------CCTTATAGTCAATA-TT----GTTATGATT----------------AGC---AAGTCAC----------TGG---TGAGAACACA-CTTTTACAACAC--CAC--TAGTGTTTGGTGTTA---AA-ATGCAATAACAATAGA--C-A-A---------AA--A--A------GTAG--GT-CCAG-TATAGT--TCATATATTTTC--AATAT------ACATAgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|6 : ctagtattaaaaatatacgatTAGATATA-ATTTCTGTATGAA-------TGTCGAATACCGTATCAATCAGTG-AAGAAACTTGTTC---C--CCATT---------ATGTTGAATGGCCTACCGTATC-ATA--AAATACTCCTTCG-AATA---------TTTTGAAAACTATTGCATT-------AA---------------------AATAAAA-AAA----ATTCAACA-TCATAGTTTC-GACT------TTTTG---ACTTTTCAAAATCGTAGTTTCAACTTCT---CAACATCGTAGTTTCGACTTTTCATCATCATAGT-TTCAACTTTATTTAATTTA----AAAAACAAG--C----CAC-------------A--ATG-GTCC--CCAACAT----AAT----ATATCCGTTC--CATGT------ATATAT-TTTAAA-T---TG-TGTGA--AAAATCGTTTTGACCTATATTCA-TT-TTTAGTTCA-GAAAGA
gi|7 : ATTTT-C-AACAACGTAGAA------ACCGTATC-ATTGGAAATATATATTTG-AATT---------TATTA-AAACTATTGCATTGTTATTCCATT--GTTTTA-TGCAAAATACAATAAAA-ACATTGTATT-AACATTT-TATTTTTTAATT------TTTTTTTAAAAAT---CAATGACA-TT-----TACT---TGAAAACGCAGTTATTGCAATTC--TAC--TGGTGTTCGGTGTTA---AAAATACAATAACAACAGA--C-A-G-AC-AACATAA--A--A--ACA-GCAC--CT-A----TATAAT--GCATATACATTA--TA-TT------ATGTAT-ATTAAATT---TT-TGTGACTATTATCG---TG---TATTTTCG-TA-TTTATTTCATGAAAAATAaa
gi|8 : gcatCATTA---AAGATGCAATAA-GGTAGG----A-ACAA-AT-AGAA--A--ACGACG---AC--GT-ACAT----AAT--TCATGTACACTC--TCTTT------ATTTAA----AAA-C---GCATGTGGCTTACATTG---AG---TCTATTCA-GAATGTATT-CATGACAAAGAGTACTCTCAACACCGCTAACCTTTATAAAATACGTCTTTCGAAGACAGTACA-TATCGGTCGAATACCTTA-TAACTCTGTCGAAAACAACGTAAGAGCAAGAATAGTTTTGGTCG-AAAA--CATAAATCGAAATATTGGTATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 111 1111 11 111 44444444444444 2222 444444 111 11 2222222 77777777777777777777777777777777777 111111 11 2222222222 1 111111 111 1111 2222222222222222 111 44444444444444444444444444444444444444444444444 111 2222222222222 33333333 1111111111 11 0000000000000000000000000000000000000000000 11
lowQualScore : 1 11 3 7 88 3 666 33 0 0 555 0 7777 11 8 777 8 6 44 66 3 3 0 11111111111111 0 3 3333 0 8 000000 000 8 00 7 6 0 1 1111111 2 00000000000000000000000000000000000 999999 5 44 0 5 4444444444 6 7 3 99 999999 3 3 3 5 6 8888 999999 111 3333 6666666666666666 5 1 1 1 9999999 1 77 000 5 88888888888888888888888888888888888888888888888 000 9999999999999 999 22222222 0 9999999999 5 5 777 999 00 1 7777777777777777777777777777777777777777777 8 11 0
lowQualScore : . .. . . .. . ... .. . . ... . .... .. . ... . . .. .. . . . .............. . . .... . . ...... ... . .. . . . . ....... . ................................... ...... . .. . . .......... . . . .. ...... . . . . . .... ...... ... .... ................ . . . . ....... . .. ... . ............................................... ... ............. ... ........ . .......... . . ... ... .. . ........................................... . .. .
lowQualScore : 0 77 3 3 11 2 888 88 2 0 888 8 0000 00 0 000 0 0 55 55 2 2 2 55555555555555 8 2 4444 8 0 000000 000 0 22 8 7 3 0 7777777 5 11111111111111111111111111111111111 777777 7 44 4 7 6666666666 7 5 5 22 333333 2 7 3 2 7 5555 222222 777 3333 0000000000000000 7 8 0 7 5555555 0 99 000 1 44444444444444444444444444444444444444444444444 888 1111111111111 666 11111111 4 2222222222 0 0 888 222 00 0 2222222222222222222222222222222222222222222 0 00 8
consensus : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCT---TGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
Reference ( family-1907 ) : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCT---TGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
gi|1 : TGTGCTTGAAGAACACACAA-G-TTA--CAAA-GTG-AATGCGCTGTT--TGAAG-ATATATCT-GCATGTAGAATTGGCA--GA-T--TAAGTA-ATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATAAT---TAAAGATTCAT-AAATAT-TACGCAAAAGCACTTTATTCA-T-AACA-AAATGTAAGTACA-ATTCCTGAACGAG-------TATCGGATACCGTATCAATCAATGTCGAAAAC-CGTAC-AAG--CCATTTT-CTAATAACGTCGAA-----TACCGTATC-ACAGGAAATATACATTCT-AGTA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTCA-TGCGAAATACATTAAAACACATTGTATTAAACA-TT-TATTTTCTGATTATTTTTTTTTT---ACAAT---AAATCACG-TT-----TTCT---TGA---TGAAGTTTTTGCAATTT--CAC--TAGTGTTCGTTGTTA---AGTACACAATAACAACAGA--C-ACATACCATCATAATAA--A--ACA-GTAC--CT-ACATGTACAAAAATCGTATACATTC--TATTT------ATGTAA-TTTAAA-C---TTATGTGACTAATATTG---TG---TATATTCA-TA-TTTGTTTCATAAAAAATAATACCTTTAAATTCAGTAACCCTGATAAAATGCGTCTGTCGTATACAGTACC-TATCAGTCGAAAACTGTA-T-ACT---------------TAAGAGCG-GTACCGTCTCGGTCG-AAAT--CATAACTCGCAATATCGGTATA
gi|11 : ATAACAACGGA--A-A-ACAT-ATCATAA--A--G--CAGTGTACGTTT-ACATATACTAT--GCAAATACATTA---A---------ATGCACCTTTAAA-TGAGTT-TG--ACTAATGTCG---TA---TATGTTCA-TA-TATATTTC--------------CTTCAAT-TCGCTTATTCTGTCAAAATACATCTGTAGAAGACCGTAC-------------AACCG-------------------------AGAGTAAGTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|12 : AATAACATCTGAATC-A-ACAT-A----AA--ACTA--AAT-GTAT--TT----C-TACAAT--ACAAATACATTC---A---------ATGTAT-TTTAAA----------TAATTA-TATTG---TG---------CA-TA-TTTATTTCCTGAAATATA-T-CCTTCAATATTGCTTACGCTGTCAAAATGCATCTGTAGAATACCGTAC------------AAAC--------------------------AAGAGTGAGTATCGTGTCGTTCGAAAAA--CAT--ATAGCAATGTTGGTATtacccccgtgattaa
gi|2 : ACACAAGT----TACACTGTT--TGAAA-ATATATCTGGTATATA----TGGTAGTGACT--TAATTACATGT
gi|2 : ttgtaattgaaaaacTA----TGGCA--GT-T--TAAGTA-ATGTAAAATGTATTATATAATGGGAAAATGTCTT--------------TAAAGATTCATTGA-AAT-TAAGCAAA-ACA-TTTATTCA-TTAACA-AAATATAA------ATTCCTGAATGAG-------TATCGAATACCGTATCAACCAATGACGAAAAC-CGTACCG-G--CCATTTTTC-AATAACGTCGAA-----AATCGTATC-ACAGGAAATTTATATTCG-AATA---------TATTG-AATCAATTCCATTGTTATTCAAAT--GTTTTA-TGCGAAATACATTAAAATACATTGTATTTAACA-TT-TTACTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCTTGATGAAAACGAAGTTTTTGCAATTC--CGC--TTGTGTTCGTCGTTA---AATACACAATAACAACAGA--C---ACAC-GCCATAT--A--A--ACA-GTAC--CT-ACAT----AAT--TCATATACATTC--TTTTT------ATGTAA-TTTAAA-CT--TT-TGTAACTTATAT-A---T----TATATTCA-TA-TTTATTTCATGAAAAACGATACCTTTAAAGTCAGAAACCCTGATAAAATGCGTCTGTCAAAGACAGAATC-TCTCGGTCGGATACCGTATT-ACTCGGCCGAAAACA---TGAGAACGAGTACCGTTTCGGTctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|3 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgaTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTT--TAGAA-ATGTAT-----GTGTA----TGGTA--GA-T----AGTT-A-GT-TA-TGTATTATATA-TGCAGAAACGTATTCACTT-AT--CCAGTAAAAATACATAGT-TAT-TACACAAATGTATCTTATTTAAC-AACC-AAACTTAAATGCA-ATTTACGGATGAA-------TGTCCAATAAGGTATCAATTAGTG----AAAC----ACTG-GTCCCATT---------ACGTCGAA-----TACCGTATC-ATA--AAATATACCTTCG-AATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATAT--CTTTTA-CGTAAAATACAATAAAA-ATATTGTATTCGACA-TT-TAATTTCTGATT------TTTTT---ACAA----ACATAATA-TG-----TTATTGATGAAAGCACAGTTTCTGCAA-----------AGCAATCA--GTTT---AATATATAATGACAACAGA--CAA-ACAC--TCAC----A--C--ACG-GATC--CT-A----TATAAT--TCATATAAACTCCATATCTACATACATGTAT-ATTAAA-T---AT-TGTGACTAAAAT-G---TGTAATATATTCATTT-TTTATTTC-T--AGAATAG
gi|4 : ccaatatcagatattatttgac---TATAGATT-----A-TATCTATACAA--GT-CTTTGTTCT-T-AACA-AAGC--AGGTATACGCTACT-GATAAAATACATCTGTCGAAGACAGTACCTTTCGGT--CGAATAC-CGTAT-A-A--C-----T-C-G-----GTCGAG-----TACCGTTTCGGTCGAAAACATAAA-TCGCAATA---------Taaaacc
gi|4 : cattttttttctataaagtattttttcttaacaaggaatCGCTA---CTGATAAAATACATCTGTCGAAGACAGTACCTT-TCGGTCGAATACCGTA-TAACT---------------C--GGTCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTCGTtcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|5 : cattttttttctataaagtattttttcttaacaaggaattatagattatatctatacaagtctttgttcttaacaaagcaggtataTGTGTTTAAAGTACATACAA-GATTGAGATACAGTCC-ACGTATCGTTCCTCGAATATACATGT-GTATGTT----AGGCA--GA-TAGAAAGGA-AAATATAA-GTAT--TACAATGCAGAAACATCTTTATTC-AT--C---CAG----TTAT-TA-T-T-TACACAA------CTTATTCA-T-CATATAAGACTAATTATA-AATTTTAGATAAA------------------GTACCATTCTATA-C----AT-TTTA-------CCATTGT---------GTCAAA-----AAACTTATC-TTA--AAATACGTATTCG--AT----------CAATG-ATACAATTGCATTGTAA--AAAATAGGTTTTATCTTG--AT----T------CCTTATAGTCAATA-TT----GTTATGATT----------------AGC---AAGTCAC----------TGG---TGAGAACACA-CTTTTACAACAC--CAC--TAGTGTTTGGTGTTA---AA-ATGCAATAACAATAGA--C-A-A---------AA--A--A------GTAG--GT-CCAG-TATAGT--TCATATATTTTC--AATAT------ACATAgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|6 : ctagtattaaaaatatacgatTAGATATA-ATTTCTGTATGAA-------TGTCGAATACCGTATCAATCAGTG-AAGAAACTTGTTC---C--CCATT---------ATGTTGAATGGCCTACCGTATC-ATA--AAATACTCCTTCG-AATA---------TTTTGAAAACTATTGCATT-------AA---------------------AATAAAA-AAA----ATTCAACA-TCATAGTTTC-GACT------TTTTG---ACTTTTCAAAATCGTAGTTTCAACTTCT---CAACATCGTAGTTTCGACTTTTCATCATCATAGT-TTCAACTTTATTTAATTTA----AAAAACAAG--C----CAC-------------A--ATG-GTCC--CCAACAT----AAT----ATATCCGTTC--CATGT------ATATAT-TTTAAA-T---TG-TGTGA--AAAATCGTTTTGACCTATATTCA-TT-TTTAGTTCA-GAAAGA
gi|7 : ATTTT-C-AACAACGTAGAA------ACCGTATC-ATTGGAAATATATATTTG-AATT---------TATTA-AAACTATTGCATTGTTATTCCATT--GTTTTA-TGCAAAATACAATAAAA-ACATTGTATT-AACATTT-TATTTTTTAATT------TTTTTTTAAAAAT---CAATGACA-TT-----TACT---TGAAAACGCAGTTATTGCAATTC--TAC--TGGTGTTCGGTGTTA---AAAATACAATAACAACAGA--C-A-G-AC-AACATAA--A--A--ACA-GCAC--CT-A----TATAAT--GCATATACATTA--TA-TT------ATGTAT-ATTAAATT---TT-TGTGACTATTATCG---TG---TATTTTCG-TA-TTTATTTCATGAAAAATAaa
gi|8 : gcatCATTA---AAGATGCAATAA-GGTAGG----A-ACAA-AT-AGAA--A--ACGACG---AC--GT-ACAT----AAT--TCATGTACACTC--TCTTT------ATTTAA----AAA-C---GCATGTGGCTTACATTG---AG---TCTATTCA-GAATGTATT-CATGACAAAGAGTACTCTCAACACCGCTAACCTTTATAAAATACGTCTTTCGAAGACAGTACA-TATCGGTCGAATACCTTA-TAACTCTGTCGAAAACAACGTAAGAGCAAGAATAGTTTTGGTCG-AAAA--CATAAATCGAAATATTGGTATA
blockSeqs : C GG C A AA A CCA CC T CTG . GT C AGA C T AA AT T A CACTTATCCAG C TGA C ATGTAT TT T TA A C G ATACATC C GACGAAAACCGTACCGGCCATTTTTCAATA TGGCCT G GG C ACATGACGTA A T A AG TGCGA A T T T T ATAG . TTA TTCA AGTTTCAACTTCT A A A T ATCATCA G TC TTT T AAACATATCATAAAGCAGTGTACGTTTACATATAC G CATATCTACATAC CCT TGAGTT CGTTTTGACC T A CTG ATA TA T ATATCGGTCGAATACCTTATAACTCTGTCGAAAACAACGTA A AT
blockSeqs : T AT . A AG A CC . . GT . . . T . T AT T T A TATTCATC C AGT . AACA AC . CT G . G . G GAAGAAACTTGTTCCCCATT A . GA . A . A A . CGTAA A A . C . TTA . . T ATTTTCTTGA A G C C CGC A GT . T ATCAACATAAAACTAAATGTATTTCTAC A TTTTT TT CTTT GTGTAA . . ATG GTA AG G CTCTCGGTCGGATACCGTATTACTCGGCCGAAAACATG . .
blockSeqs : A . . . . . . . T . A T A . . . T TA . GTC T . AC T . A . A CGAATACCGTATAACTCG T . GG . A . T A . TCTTG A A . C . TAA . . C ATGTTATTGA G A C T CAC G AC . T CACACGCCATATAAACAGTACCTACAT T AATAT AT TTTT CGTA . . ATG T CA C CTTTCGGTCGAATACCGTATAACTC . .
blockSeqs : . . . . . . . A . . T . C A . G . C GAAACACTGGTCCCATT T . . . A . . T . TGCAA . A . C . TAT . . T ATTTACT C T T T TAC G GT . A CAGACAACATAAAAACAGCACCTATAT T CATGT TA CGCA TGTG . . ATG . T C AACCG . .
blockSeqs : . . . . . ACATTTTACCATTGT A . . . T . . . . . . . . . . . . . . TGG A A C . . . . . G CAAACACTCACACACGGATCCTATAT T TCTTT TT TAT CGTG . . AG . AAACA
blockSeqs : . . . . . . . AACAAATAGAAAACGACGACGTACAT G TATT TA TTG TGAG . . T
blockSeqs : CAAAAAAGTAGGTCCAGTAT T A A . AT . . .
blockSeqs : CCACAATGGTCCCCAACAT . A
blockSeqCons : **** T** GAAACACCGGTACCATTC***************** G* ****** ATTTTCTTGN****** CAAACAACATAAAAACGGNACCTACAT******************** T** TTCGGTCGAATACCTATAACTCGCCGAAAACA***********
originalCons : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG-CGAAAAC-CGTAC-G-G--CCATTTT-C-AA-AACGTCGAA-----TACCGTATC-ATAGGAAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACA-TT-----TTCT---TGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGA--C-A-ACAC-ATCATAA--A--A--ACG-GTAC--CT-ACAT-TACAAT--TCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACC-T-TCGGTCGAANACCGTA-T-ACT---------------TAAGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
finalCons : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-T--TAAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCAT--AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTGAAACACCGGTACCATTC-----------------ACGTCGAA-----TACCGTATC-ATAG-AAATATACATTCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACATTTTCTTGN------TGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTA---AATATACAATAACAACAGACAAACAACATAAAAACGGNACCTACAT--------------------AATT--CATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTACTTCGGTCGAATACCTATAACTCGCCGAAAACA-----------AGAGCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 2222 11 1 111 1111 11 111 44444444444444 2222 444444 111 11 2222222 77777777777777777777777777777777777777777 111111 2222 111 222222222 1 111111 111 1111 111 11111111111111111111 11111111111 2222222222222 33333333 1111111111 11 5555555555555555555555555555555555555555555555 11
lowQualScore : 1 11 3 7 88 3 3333 33 0 0 555 0 7777 11 8 777 8 6 44 66 333 0 11111111111111 0 3 3333 0 8 000000 000 8 00 7 6 0 7 1111111 1 33333333333333333333333333333333333333333 1 999999 5 5555 000 5 222222222 6 7 3 99 999999 3 3 3 5 6 8888 999999 111 3333 1 111 3 1 1 1 9999999 1 77 1 5 55555555555555555555 777 4 55 66 4 33333333333 4 9999999999999 999 22222222 0 9999999999 5 5 777 999 00 1 6 5555555555555555555555555555555555555555555555 6 8 11 0
lowQualScore : . .. . . .. . .... .. . . ... . .... .. . ... . . .. .. ... . .............. . . .... . . ...... ... . .. . . . . ....... . ......................................... . ...... . .... ... . ......... . . . .. ...... . . . . . .... ...... ... .... . ... . . . . ....... . .. . . .................... ... . .. .. . ........... . ............. ... ........ . .......... . . ... ... .. . . .............................................. . . .. .
lowQualScore : 0 77 3 3 11 2 8888 88 2 0 888 8 0000 00 0 000 0 0 55 55 555 2 55555555555555 8 2 4444 8 0 000000 000 0 22 8 7 3 8 7777777 0 11111111111111111111111111111111111111111 7 777777 7 1111 000 7 999999999 7 5 5 22 333333 2 7 3 2 7 5555 222222 777 3333 7 777 3 8 0 7 5555555 0 99 7 1 99999999999999999999 888 4 44 11 4 22222222222 7 1111111111111 666 11111111 4 2222222222 0 0 888 222 00 0 7 5555555555555555555555555555555555555555555555 7 0 00 8
consensus : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-TT--AAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG---A----A-AC---ACCGGT--AC----CATTT-------ACGTCGAA-----TACCGTATC-AT-AG-AAATATACAT---TCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACATTTT---CTTGATGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTAAATATACAATAACAACAGACAAA---CA-A-CATA-A--AA---ACG-GT-AC--CT-ACAT------A----ATTCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTA-C--T--TCGGTCGAATACC-TATA-ACTC-G---AAA-C-----A--AGAG-CGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
Reference ( family-1907 ) : TGTGTTTGAAGNACGNACAA-GATTAAACAAAAGTCCAATGCACTGTT--TGGAA-ATATATCT-GTATGTA----TGGCA--GA-TT--AAGTA-ATGTATAATGTATTATATAATGCGGAAACGTCTTNANTC-AT--C---TAAAGATTCAT-GA-TAT-TACGCAAA-GCACTTTATTCA-T-AACA-AAACNTAAGTATA-ATTTCTGGATGAA-------TGTCGAATACCGTATCAATCAGTG---A----A-AC---ACCGGT--AC----CATTC-------ACGTCGAA-----TACCGTATC-AT-AG-AAATATACAT---TCG-AATA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTTA-CGCGAAATACAATAAAA-ACATTGTATTCAACA-TT-TANTTTCTGATT------TTTTT---ACAAT---AAATCACATTTT---CTTGNTGAAAACGCAGTTTTTGCAATTC--CAC--TAGTGTTCGNCGTTAAATATACAATAACAACAGACAAA---CA-A-CATA-A--AA---ACG-GN-AC--CT-ACAT------A----ATTCATATACATTC--TATTT------ATGTAN-TTTAAA-C---TT-TGTGACTAATATCG---TG---TATATTCA-TA-TTTATTTCATGAAAAATAGTACCTTCAANATCGCTAACCCTGATAAAATGCGTCTGTCGAAGACAGTA-C--T--TCGGTCGAATACC-TATA-ACTC-GCCGAAAAC-----A--AGAG-CGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTGGTATA
gi|1 : TGTGCTTGAAGAACACACAA-G-TTA--CAAA-GTG-AATGCGCTGTT--TGAAG-ATATATCT-GCATGTAGAATTGGCA--GA-TT--AAGTA-ATACACAATGTAGTATATAATGTGAAAACGTCTTAAATCGATAAT---TAAAGATTCAT-AAATAT-TACGCAAAAGCACTTTATTCA-T-AACA-AAATGTAAGTACA-ATTCCTGAACGAG-------TATCGGATACCGTATCAATCAATGTCGA----A-A----ACCG-T--ACAAGCCATTTTCTAATAACGTCGAA-----TACCGTATC-AC-AGGAAATATACAT---TCT-AGTA---------TATTG-AAACTATTGCATTGTTATTCAAAT--GTTTCA-TGCGAAATACATTAAAACACATTGTATTAAACA-TT-TATTTTCTGATTATTTTTTTTTT---ACAAT---AAATCACGTTTT---CTTGATGAA------GTTTTTGCAATTT--CAC--TAGTGTTCGTTGTTAAGTACACAATAACAACAGACACATACCA-T-CATA-ATAAA---ACA-GT-AC--CT-ACATGTACAAA----AATCGTATACATTC--TATTT------ATGTAA-TTTAAA-C---TTATGTGACTAATATTG---TG---TATATTCA-TA-TTTGTTTCATAAAAAATAATACCTTTAAATTCAGTAACCCTGATAAAATGCGTCTGTCGTATACAGTA-C--CTATCAGTCGAA-AAC-TGTATACT----------T-----A--AGAG-CG-GTACCGTCTCGGTCG-AAAT--CATAACTCGCAATATCGGTATA
gi|11 : ATAACAACGGA-AAA---CATATCATA-A--AG---CAGTGT-ACGTTT-ACAT------ATACTATGCAAATACATTA---A---------ATGCACCTTTAAA-TGAGTT-TG--ACTAATGTCG---TA---TATGTTCA-TA-TATATTTC--------------CTTCAAT-TCGCTTATTCTGTCAAAATACATCTGTAGAAGACCGTA-C----------------------A-AC-----------C-----G--AGAG-TAAGTACCGTCTTGGTCG-AAAAATCATAAATAGCAATATTGGTAT
gi|12 : AATAACATCTGA--AT---CA-A-CATA-A--AACTAAAT-GT-AT--TT-CTAC------A----ATACAAATACATTC---A---------ATGTAT-TTTAAA----------TAATTA-TATTG---TG---------CA-TA-TTTATTTCCTGAAATATA-T-CCTTCAATATTGCTTACGCTGTCAAAATGCATCTGTAGAATACCGTA-C---------------------------------AAA-C-----A--AGAG-TGAGTATCGTGTCGTTCGAAAAA--CAT--ATAGCAATGTTGGTATtacccccgtgattaa
gi|2 : ACACAAGT----TACACTGTT--TGAAA-ATATATCTGGTATATA----TGGTAGTGACTT--AATTACATGT
gi|2 : ttgtaattgaaaaacTA----TGGCA--GT-TT--AAGTA-ATGTAAAATGTATTATATAATGGGAAAATGTCTT--------------TAAAGATTCATTGA-AAT-TAAGCAAA-ACA-TTTATTCA-TTAACA-AAATATAA------ATTCCTGAATGAG-------TATCGAATACCGTATCAACCAATG---ACGAAA-ACCGTACCGG----C----CATTTTTCAATAACGTCGAA-----AATCGTATC-AC-AGGAAATTTATAT---TCG-AATA---------TATTG-AATCAATTCCATTGTTATTCAAAT--GTTTTA-TGCGAAATACATTAAAATACATTGTATTTAACA-TT-TTACTTCTGATT------TTTTT---ACAAT---AAATCACATTTT---CTTGATGAAAACGAAGTTTTTGCAATTC--CGC--TTGTGTTCGTCGTTAAATACACAATAACAACAGACACA---CG-C-CATA-T--AA---ACA-GT-AC--CT-ACAT------A----ATTCATATACATTC--TTTTT------ATGTAA-TTTAAA-CT--TT-TGTAACTTATAT-A---T----TATATTCA-TA-TTTATTTCATGAAAAACGATACCTTTAAAGTCAGAAACCCTGATAAAATGCGTCTGTCAAAGACAGAATC--TC-TCGGTCGGATACCGTATT-ACTCGGCCGAAAAC-----ATGAGAA-CGAGTACCGTTTCGGTctctgaccatggtaagttgatatggcagtttaagtaatgtaaaatgtattatataatgggaaaatgtctttaaagattcattgaaattaagcaaaacatttattcattaacaaaatataaattcctgaatgagtatcgaataccgtatcaaccaatgacgaaaaccgtaccggccatttttcaataacgtcgaaaatcgtatcacaggaaatttatattcgaatatattgaatcaattccattgttattcaaatgttttatgcgaaatacattaaaatacattgtatttaacattttacttctgatttttttacaataaatcacattttcttgatgaaaacgaagtttttgcaattccgcttgtgttcgtcgttaaatacacaataacaacagacacacgccatataaacagtacctacataattcatatacattctttttatgtaatttaaacttttgtaacttatatattatattcatatttatttcatgaaaaacgatacctttaaagtcagaaaccctgataaaatgcgtctgtcaaagacagaatctctcggtcggataccgtattactcggccgaaaacatgagaacgagtaccgtttcggt
gi|3 : ttgtaattgaaaaacacacaagttacactgtttgaaaatatatctggtatatatggtagtgacttaattacatgtctctgaccatggtaagttgaTGTGTTTGAAGCATGGGCAACGATTAAACAAAAGTCCAATATATTGTT--TAGAA-ATGTAT-----GTGTA----TGGTA--GA-T----AGTT-A-GT-TA-TGTATTATATA-TGCAGAAACGTATTCACTT-AT--CCAGTAAAAATACATAGT-TAT-TACACAAATGTATCTTATTTAAC-AACC-AAACTTAAATGCA-ATTTACGGATGAA-------TGTCCAATAAGGTATCAATTAGTG---A----A-AC---ACTGGT--CC----CATT--------ACGTCGAA-----TACCGTATC-AT-A--AAATATACCT---TCG-AATACATGACGTATATTG-ACACTGGTGAAGTGGTAATCATAT--CTTTTA-CGTAAAATACAATAAAA-ATATTGTATTCGACA-TT-TAATTTCTGATT------TTTTT---ACAA----ACATAATATGTT---ATTGATGAAAGCACAGTTTCTGCAA-----------AGCAATCA--GTTTAATATATAATGACAACAGACAAA---C--A-CTCA-C--AC---ACG-GA-TC--CT-ATAT------A----ATTCATATAAACTCCATATCTACATACATGTAT-ATTAAA-T---AT-TGTGACTAAAAT-G---TGTAATATATTCATTT-TTTATTTC-T--AGAATAG
gi|4 : ccaatatcagatattatttgac---TATAGATT-----A-TATCTATACAA--GT-CTTTGTTCT-T-AACA-AAGC--AGGTATACGCTACTG-ATAAAATACATCTGTCGAAGACAGTACCTTTCGGTC---G----A-AT---ACC-GT--AT----AACTC-------G-GTCGAG-----TACCGTTTCGGT-CG-AAA---ACATAAATCGCAATA---------Taaaacc
gi|4 : cattttttttctataaagtattttttcttaacaaggaatCGCTA---CTGATAAAATACATCTGTCGAAGACAGTA-CCTT--TCGGTCGAATACCGTATA-ACTC-G-------------------GTCGAGTACCGTTTCGGTCG-AAAA--CATAAATCGCAATATTCGTtcgtgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|5 : cattttttttctataaagtattttttcttaacaaggaattatagattatatctatacaagtctttgttcttaacaaagcaggtataTGTGTTTAAAGTACATACAA-GATTGAGATACAGTCCA-CGTATCGTTCCTCGAATATACATGT-GTATGTT----AGGCA--GA-TAGAAAGGA-AAATATAA-GTATTACA--ATGCAGAAACATCTTTATTC-AT--C---CAG----TTAT-TA-T-T-TACACAA------CTTATTCA-T-CATATAAGACTAATTATA-AATTTTAGATAAA-------------GTACCAT-TCTAT---------------AC---ATTT-T--AC----CATT--------GTGTCAAA-----AAACTTATC-TT-A--AAATACGTAT---TCG-ATCA----------AT-G-ATACAATTGCATTGTAA--AAAATAGGTTTTATCTTG--AT----T------CCTTATAGTCAATA-TT----GTTATGATT----------------AGC---AAGTCAC----------TGGTGAGAACACA-CTTTTACAACAC--CAC--TAGTGTTTGGTGTTAAA-ATGCAATAACAATAGACAA------------A-A--AA---GTA-GG-TC--CA-GTAT------A----GTTCATATATTTTC--AATAT------ACATAgaacggtggtacaacgttcaccggatattgccccaaaatgataagatttttttctcaaattcaacagaactttagtcaagaaggtaagtccacatctaattatctagttgtttttttgtaactacaacataaactatcttatgtgattaataagtaactgatgtgcaaatgctctacaacacggaaaattactaaaatctatacgggaatgagaaaacttgcgattctctgtcaaccttatcatttgatatccggatgtcatgtgcacattttactcaatatcgtc
gi|6 : ctagtattaaaaatatacgatTAGATATA-ATTTCTGTATGAA-------TGTCGAATACCGTATCAATCAGTG---A----AGAA---ACTTGTTCCC----CATT--------ATGTTGAATGGCCTACCGTATC-AT-A--AAATACTCCT---TCG-AATA---------TTTTGAAAACTATTGCATT-------AA---------------------AATAAAA-AAA----ATTCAACA-TCATAGTTTC-GACT------TTTTG---ACTTTTCAAAATCGTAGTTTCAACTTCTCAACATCGTAGTTTCGACTTTTCATCATCATAGT-TTCAAC-TT---TATTTAAT-TTAAAAAACAAG---CC-A-C--------A---ATG-GT-CC--CCAACAT------A----AT--ATATCCGTTC--CATGT------ATATAT-TTTAAA-T---TG-TGTGA--AAAATCGTTTTGACCTATATTCA-TT-TTTAGTTCA-GAAAGA
gi|7 : -------ACGTAGAA------ACCGTATC-ATTGG-AAATATATAT---TTG-AATT---------TATTA-AAACTATTGCATTGTTATTCCATT--GTTTTA-TGCAAAATACAATAAAA-ACATTGTATT-AACATTT-TATTTTTTAATT------TTTTTTTAAAAAT---CAATGACATTTA---CT---TGAAAACGCAGTTATTGCAATTC--TAC--TGGTGTTCGGTGTTAAAAATACAATAACAACAGACAGA---CA-A-CATA-A--AA---ACA-GC-AC--CT-ATAT------A----ATGCATATACATTA--TA-TT------ATGTAT-ATTAAATT---TT-TGTGACTATTATCG---TG---TATTTTCG-TA-TTTATTTCATGAAAAATAaa
gi|8 : gcatattttcaacaCATTAAAGATGCAATAA-GGTAGG--AA---CA-A--ATAGA--AA---ACG-ACGAC--GT-ACAT------A----ATTCATGTACACTC--TCTTT------ATTTAA----AAA-C---GCATGTGGCTTACATTG---AG---TCTATTCA-GAATGTATT-CATGACAAAGAGTACTCTCAACACCGCTAACCTTTATAAAATACGTCTTTCGAAGACAGTA-CA-TA-TCGGTCGAATACCTTATA-ACTCTGTCGAAAACAACGTA--AGAG-CAAGAATAGTTTTGGTCG-AAAA--CATAAATCGAAATATTGGTATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GATGGTACAACTTACACCGGATATTGCCCGAAAGTGATAATAATTTTTTTGCCAGCAGGGTAAGTTCAAATCCAATTACTCTACTTATTTTTGTAACTTCAACATGAACGATTCATGTAATTAAAAGGTAACTGTTGTGCAAATGTTTTACAAAACGTGAAATAACTATTTTGAGATAATGAAAATTGCGATTTATTGTCAGCCTTATCATTTGATAAACGGATACCATGTCCACATTTTGCTCAATATCGTTT
Unaligned ( gi|10 ): GGTGGTACAGCGTGCATAGGATATTGCCTTAAATCATTTTTTCGAATAGTTTTGAACAACAAGGTAGGTTGAGATAGAATGATCTACTGTTTGTCATAACAACAACATACGGGTCTTGTGTGACTAATAAATGATATGTAAATACTCTAAAACACATGGAATGAATCAAACATGTGTTGTCATGATTACAATTTTTTTTTAATGTAAACCATTTCATTTGATACACATATGTCA
Unaligned ( gi|13 ): CGGTGGTACAACGTACTCCGGATATTGCCCTAAAGTGATTAGATTGTTTTTACAATTCAGCATGACTTTTGTCAACAAGGTAAGTTCAAACCTTATTATCTTTTTGTGACTACAACATAAACTATCTATGTGAGTATTACGTAACTGATGTACAAATGCTTTGCAACACGGGAAATCACTCAAAACTATACTGGAAT
Unaligned ( gi|14 ): AACAGTAGTACAACGTGCACCGGATATTGCTACGAAATGATAAAGTTTTCGAAAATTTGTGATAATTTTGATCAACCAAATTTCATGTTATTTATTACGACCACAGCTTACACTGTTCGTGAAACTAATTACTAATTTATGTGCGTGCCAAATCACGTGAAATGGACCAAACATATGTTAGAATGTTA
Unaligned ( gi|15 ): AAACCAAATAAATCAGTTTTGTAAAATTCAAAATAAATGATAAGTTTGAGTAATAAGGATGATGTGTAAATGCTCTACAACACGAGATCGAAATGACTAAAAACTGAATATGCTGAAAATTTCGATTCACTGTCAGTCTAATCCTTTTATAAACGGTTGTCAATTACTGAATATCGTCT
Unaligned ( gi|16 ): CTATAACATTAACTATTTATGTGATTAATAAGCGACTGGTGTGTAGAATCTCTACAACACGCGCAATATCTCAAAAGTAGGCTGAAATAATGAACTTTACGATCACTGTCAACCATATCATTGTAT
Unaligned ( gi|17 ): CATAAAGAAATCACTGTGGAGTACATCGTACACCGGATATTGCCCTAAAGTGATAATATTTTTTTCTTTTAAAATTCCAAATGATTTTTAGTCGGAATCCAGTTATCTGGTTGTTTTTTT
Unaligned ( gi|18 ): TGTGTACAACGTACACCGGATATTGCCCCAAAATAATAAGAATTTTTCGAAAAATTAGAAATATTTTTATCAACAAGGTCAGTTGAAAATCAAGTATCCATA
Unaligned ( gi|19 ): CGGTCGATATTCAGTCTAGAAAACATTTCTACAACTTTC