lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 44444444444 1 333 7777777777777777777777 2222222222222 5555555555555555555555 3333333333333 1111111 2 7777777777777777777777777777777777777777777777777777777 222222 1 11 2 111
lowQualScore : 3333 4 555 3 5 88888888888 4 66 8 666 55 55 77 8888888888888888888888 666 55 2222222222222 3 0 2 0 4444444444444444444444 2 4 5 4444444444444 66 7777777 2 5 7 6 0000000000000000000000000000000000000000000000000000000 3 6 88 555555 11 0 1 4 44 1 3 4 8 111 9 3
lowQualScore : .... . ... . . ........... . .. . ... .. .. .. ...................... ... .. ............. . . . . ...................... . . . ............. .. ....... . . . . ....................................................... . . .. ...... .. . . . .. . . . . ... . .
lowQualScore : 9999 3 777 9 0 11111111111 0 11 9 333 55 55 00 5555555555555555555555 444 33 6666666666666 6 4 3 7 1111111111111111111111 0 1 0 6666666666666 99 0000000 5 0 4 0 7777777777777777777777777777777777777777777777777777777 0 4 88 666666 44 0 4 8 44 4 0 0 0 666 8 7
consensus : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTC---G-GAGTCGAATGTGGAAAA--T-AAAA-AAGGTT--AAAAT--G-CGAAA--------A---AT--------AAAT---GAAGCCGAA--GG-----GGG-TA-TGGGGTAAGGGGTTCGTGCTT-AG--GA-AATAGAAAACC-GTATAATTTCGGGCAA-TTT-G-AAC-G-----AC--TTCACAGT--CCGTGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTATTAAAGA----AAA----AGA--------GGAGG---ACCCCAC-CCCC-AACT--------CCCNGCAAGTANG----AGGGGGACAACACCCTCCCACACCCT-CCCCCGGGCGTACGCTCAAA-AAA--CATCTAGGAACGCCNCT
Reference ( gi|3 ) : AGGGGC----GTTCTTAGGCATACTCCTATGCACCCAGTCGTATAACTC---GCGTGTCAAATGTGGACAA--T-AAAACACGGTT--AAAAT--G-TAAAA--------A---A---------AAAT---GAAGCCAAA--GG-----GGGCTA-TGGGGTAAGGGGTTCGTGCTTCAG--GA-AATAGAAAGCCTGTATAATTTCGGACAA-TTT-G-A-C-G-----AC--TTCACAGT--ATGTATCAAAGTCGCTATAAAC-TACTTATTTGTAGTTCTATTAAAGA----CAA----AAA--------GGATG---ACCCCACACCCCGAACT--------CTCCGCAAACATG----AGGGGGACAACCCCCTCTCACACCCT-CCCCCGGGTGTATACT-AAA-AAA--CATCTAGGAATGCCCCT
gi|1 : AGGGGC----GTTCCTAAACAAACTCATATACGCCCAGGCCTATAACTC---A-GAGTAAAATAAGGAAAG--T-AAAA---GGAT--AGAAT--G-CAAAA--------ATCTG---------CAAT---AAAAC-------G-----GGG-TA-AGGGGTAAGGGTTTTGTACTTTAG--GA-AATAGAAAACCTGTATTATATCGGGCAC-TTT-GAA-T-G-----AC--GTCAAAGT--CCGTATCAAATGCGTTAGAAAC-TACTCATTTACAGTTCTATTATGGA----AAA----AAATCTTAGGGAGAGG---ATCCC--------AACT--------CCCTACAAGCAGG----ACGGAGACAATATCCTCCGAAATACT--CCCCGGGCGTACACT-AAATAAA--CATCTAAGAA-GCCGCT
gi|4 : cAGGGAC----GTTCCTAGGCATACTCCTATATGCCTGGGTGAA-AACTC---A-GAGTTGAATGTGGAAAA--A-AAAA----GTT--ATCAT--G-TGAAA--------A---ATGCAATAG-AAAT---GAAGTTGAA--TG-----GGG--------GTAAGGGGTTTATGCT-------------------------AATTTCGGACAA-TTTCA-A-C-G-----AC--TTCACAGT--CTGTGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCCATTACAGA-----AA----A------------ATA---ATC----------------------CTCAGCAAGTATA----AGGGGGA-AACACCCTCCCACACCCT-CACCAGCATATACACA-AAA-AAACCCATCTAGGAATGCgtctgcggtaacattgatagatgcatgaaac
gi|5 : cAGGGGCT---ATCCTT-GTCAGACTCCTGGGCGC--------ATAACTCAAAGAGT-TCAA-TGTGGA-AA--TGAAAAAAATGTT--AAAAT--G-CGAAA--------A---A---------AGAT---G---TTGAA--GT-----GGGATA-TAAAATA--GAGT-----CT--AG--GG---TAGAAAACTCATATAATTTTGAGCAAATTT-A-A-AAG-----AC--TTCACTGT--CCAT-TTAAAGTCGC-AAAAACATACTCATTTGCAGTTCTACTAAAGA----AAA----A
gi|12 : acattAGGGGC----GATCCTAGACATACTCCTATATGCCCGAGCGTATTACTC---A-GAGTTGAGTGTGGATAA--T-AAAA-AAGGTT--AAAAT--G-CAAAG--------A---ATATAGT---AAATCTAGAAACCGAA--GGA----GGAGTATTGGGGTGAGAGtttttcgggggaaacccccaccaacaggtatatactcaaaatccaactaggaa
gi|9 : AAGGGT----GTTCCTAGGCATTCTCCTATATGACCAGGCCTATAACT----G---ATTGAATGTGGAAAA--T-AAAA-AAGGTT--TAAAT--GCCAAAAATGAAAT-A---A---------AAAT---GAAGCCGAA----------AGC-----AGGTAAGGGGTTAGTGCT
gi|16 : tcAGGGGCAGCGGTTCCTAGACATACTCCTAAACGCACGGGCGTATAACTC---A-GAGTCGAACGTaattttgggcaattag
gi|10 : gccGGGGC----GTTACTAGGCATACTCCTACACGACCGGGCGTATAACTC---A-GGGTTGAATGTGG-CAATTT-AAAACG-GGTT--AAAATGCG-TAAAATGCAAT--A---A---------AAAT---GAAGCCGAA--CGTAGTAGGG-TA-TGTGGTAAGCGATTCGTG
gi|8 : tGGGC----TTTCCTAGGTGTA-TCCTATACGTCTGGGCTTATAATTC---A-GAGTTGTATGTGGGAAA--T-AAAAAAAGGTT--AAAAT--G-CGAAAAATGTAATA---A---------AAAT---GAAGCCGAA--GG-----GAG-TA-TGAAGTAAAGGGTTCGTCATTAAG--TAGAATAGAAATCC-GTAAAATTTC
gi|2 : tacGGC----GTTCCTAGACATACTCCTATATACCTGGGGGTATAAC-------ATG---AACA-GGAAAG--T-AAAAAAAGGTTGAAAAAG--G-CAAAA--------A---ATGC------AAA----AAAGTGAATTTGT-----GGGGTA-TGGTGTA-TGGATATGTGCT---------AAT------------TAATTTTGGGCAT-TTT-A-AAC-ATCTTCACAGTTCACAGT--ACATGTCAAAGTTGCTAAAAAC-AACTCATTTGCAGGT-TAATAAAAAATCTCGA----GGG--------GGGGGGGGA----AGACCCC-AACT--------CCCAGCAAGTAGG----AGGGGGACACCACCTTCCCACACCCT-TCTTTGGGCTTATGCTCAAA-AAA--CATCTAGGAACGCCTCT
gi|7 : tCCCGGGCGTACAACTC---GGGAGTTGAATGTGGAAAA--TTGAAACAAGGTT--AAAAT--G-CGAAA--------A---ATGTAATGAAAAAT---AAAGTTGAA--GA-----TGGCTA-TGGAATATGCGGTTCGTATTTTAA--GA-AATAGAAAACCAGTATGATTTCGGGCAA-TTT-GAA-T-G-----AC--TTTACAGT--CCGTGTCAAAGTCGCTA-AAAT-TACTCATTTGCAGgtcagtttacagatgcttgtaaa
gi|11 : tg--AAAAT--G-CAACA--------A---A---------AA-T---GAAGCCAAA--TG-----GGGATA-TGGGGTCAGGGGTTCGTGC------------------------A-AATTTCAAGCAA-TTT-G-AAT-G-----AC--TTCACAGT--CCTTGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCTGTT
gi|15 : ---GAAGCCGAA--GG-----GCG-TA-TGGAGTAAAGGGTTCGTCCTTTAGTAGA-TATAGAAATCCttaaaaaatcatt
gi|6 : AG--GA-AACAGAAAACCTTTCTGTTTGCGAGCAA-TTT-G-AAT-G-----AT--TTCACAGTCAATGT--CAAAGTAACTA-AAAG-TACTAATTTGCTGTTCTATTAAAAA----CAATCTCGGA--------GAAGG---ACCCCCCCCCCCCCCCCCCCCCCCACCCCACAAGTATGTACAAAGGGGACAACCC---------TCCT-TCTCTAGGCGTATTCTCAAA-AAC--CATCTAAGAACGCCCCTggaaattttacgg
gi|13 : AACCCGTATAATTTTGGGCAA-TTT-G-AAT-G-----AC--TTGACAGT--CTGTGTCAAAGTCACTAAGAAC-TACTCATTTGCAGTTCTATTAAAGA----AAA----AAA--------gtttta
gi|14 : gtactttgtaaaatgacatctccacGATG---ACCCCAC------------------CCCTGCAAGTA-------GGAGTAC----CCTTCTCACACCCTTCCCCCAGGCGTATACTCAAA-AAC--CATCTAGGAACGCccct
Alignments
lowQualScore : 111 111111 888888888888888888 222222222222 33333333333333333333333333333 1111111 1111 66666666666666666666666666666666666666666666666 1111 11 111
lowQualScore : 8888 333 3 7 222222 4 0 8 55 2 000000000000000000 555 2 222222222222 6 3 55555555555555555555555555555 3 4 1 4444444 4 66 888 0000 44444444444444444444444444444444444444444444444 1 1 4444 2 7 1 6 00 3 88 2 111 3 1
lowQualScore : .... ... . . ...... . . . .. . .................. ... . ............ . . ............................. . . . ....... . .. ... .... ............................................... . . .... . . . . .. . .. . ... . .
lowQualScore : 5555 444 6 0 333333 0 7 0 00 6 666666666666666666 888 3 666666666666 7 3 55555555555555555555555555555 6 4 7 4444444 4 99 888 6666 00000000000000000000000000000000000000000000000 0 0 2222 5 2 0 7 33 7 22 5 777 7 0
consensus : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AA-AAAA-GGTT--AAAATGCGAAAAA-----TG-AATAA-A---AAT---GAAGCCGAA---G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
Reference ( family-1805 ) : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCG--G-AGTCGAATGTGGAAA--AT--AA-AAAA-GGTT--AAAATGCGAAAAA-----T--------A---AAT---GAAGCCGAA---G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAAAC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GAG-GAGGACCCCAC-CCCC-AACT----------CCCNGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTACGCTCAAAAAA---CATCTAGGAACGCCNCT
gi|1 : AGGGGC----GTTCCTAAACAAACTCATATACGCCCAGGCCTATAACTCA--G-AGTAAAATAAGGAAA--GT--AA-AA---GGAT--AGAATGC-AAAAA-----T--------CTGCAAT---AAAAC----------G-----GGG-TA-AGGGGTAAGGGTTTTGTAC-TTTAG--G--AAATAGAAAAC-CTGTATTATAT-CGGGCAC-TTTGAATGACGTCAAAGTCCG-------TATCAAATGCGTTAGAAAC-TACTCATTTACAGTTCTA--TTATGGAAAAA----AATCTTA-------GGGAGAGGA-------TCCC-AACT----------CCCTACAAGCAGG----ACGGAGACAATATCCTCC-GAAATACT--CCCCGGGCGTACACTAAATAAA---CATCTAAGAA-GCCGCT
gi|10 : cGGGGC----GTTACTAGGCATACTCCTACACGACCGGGCGTATAACTCA--G-GGTTGAATGTGGCAAT-TT--AA-AACG-GGTT--AAAATGCGTAAAA-----TGCAATAA-A---AAT---GAAGCCGAA---C--GTAGTAGGG-TA-TGTGGTAAGCGATTCGTGgtctgcggtaacattgatagatgcatgaaac
gi|11 : t--AAAATGCAACAAA------------------AAT---GAAGCCAAAT--G--G-----GGA-TA-TGGGGTCAGGGGTTCGTGC---------------------------A-AATTT-CAAGCAA-TTTGAATGACTTCACAGTCCT-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCTGTTTTA---AAAAA----
gi|12 : AGGGGC----GATCCTAGACATACTCCTATATGCCCGAGCGTATTACTCA--G-AGTTGAGTGTGGATA--AT--AA-AAAA-GGTT--AAAATGCAAAGAATATAGT--------A---AATCTAGAAACCGAA---GGAG-----GAG-TATTGGGGTGAGAGtcatt
gi|13 : AACC-C-GTATAATTT-TGGGCAA-TTTGAATGACTTGACAGTCTG-------TGTCAAAGTCACTAAGAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------AA
gi|14 : gtactttgtaaaatgacatctccac-GATGACCCCAC-CCC-------------------TGCAAGTAGG----AG--------TACCCTTCTCACACCCTTCCCCCAGGCGTATACTCAAAAAC---CATCTAGGAACGCccct
gi|15 : ---GAAGCCGAA---G--G-----GCG-TA-TGGAGTAAAGGGTTCGTCCTTT-AGTAG--ATATAGAAATC-C-GGA-AATTT-acttg
gi|16 : AGGGGCAGCGGTTCCTAGACATACTCCTAAACGCACGGGCGTATAACTCA--G-AGTCGAACGTtacgg
gi|2 : gccGGC----GTTCCTAGACATACTCCTATATACCTGGGGGTATAAC--------AT-GAACA-GGAAA--GT--AA-AAAAAGGTTGAAAAAGGCAAAAAA-----TGC------A---AA----AAAGT-GAATTTGT-G-----GGG-TA-TGGTGTA-TGGATATGTGC-T----------AAT-------------TAATTT-TGGGCAT-TTTAAACATCTTCACAGTTCACAGTACATGTCAAAGTTGCTAAAAAC-AACTCATTTGCAGGT-TA--ATA---AAAAATCTCGA----G-------GGG-GGGGGGGAAGA-CCCC-AACT----------CCCAGCAAGTAGG----AGGGGGACACCACCTTCC-CACACCCT-TCTTTGGGCTTATGCTCAAAAAA---CATCTAGGAACGCCTCT
gi|3 : tAGGGGC----GTTCTTAGGCATACTCCTATGCACCCAGTCGTATAACTCGC-G-TGTCAAATGTGGACA--AT--AA-AACACGGTT--AAAATGTAAAAAA--------------A---AAT---GAAGCCAAA---G--G-----GGGCTA-TGGGGTAAGGGGTTCGTGC-TTCAG--G--AAATAGAAAGC-CTGTATAATTT-CGGACAA-TTTG-ACGACTTCACAGTATG-------TATCAAAGTCGCTATAAAC-TACTTATTTGTAGTTCTA--TTA---AAGAC----AA----A-------AAG-GATGACCCCACACCCCGAACT----------CTCCGCAAACATG----AGGGGGACAACCCCCTCT-CACACCCT-CCCCCGGGTGTATACT-AAAAAA---CATCTAGGAATGCCCCTgtcagtttacagatgcttgtaaa
gi|4 : AGGGAC----GTTCCTAGGCATACTCCTATATGCCTGGGTG-AAAACTCA--G-AGTTGAATGTGGAA-------AA-AAAA-AGTT--ATCATGTGAAAAA-----TGCAATAG-A---AAT---GAAGTTGAA---T--G-------------GGGGTAAGGGGTTTATGC----------------------------TAATTT-CGGACAA-TTTCAACGACTTCACAGTCTG-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCCA--TTA---CAGAA----AA----A--------------------------T-AATC----------CTCAGCAAGTATA----AGGGGGA-AACACCCTCC-CACACCCT-CACC--AGCATATACACAAAAAAACCCATCTAGGAATGC
gi|5 : cAGGGGC----TATCCTTGTCAGACTCCT--------GGGCGCATAACTCAAAG-AGTTCAATGTGGAAATGA---AA-AAAA-TGTT--AAAATGCGAAAAA--------------A---GAT---G---TTGAA---GT-G-----GGA-TA-TAAAATAGAG---TC------T-AG--G--G--TAGAAAACTC-ATATAATTT-TGAGCAAATTTAAAAGACTTCACTGTCCA-------T-TTAAAGTCGC-AAAAACATACTCATTTGCAGTTCTA--CTA---AAGAA----AA----ATTTTTCGGGG-GAAACCCCCAC-C
gi|6 : acatt-AG--G--AAACAGAAAAC-C-TTTCTGTTTGCGAGCAA-TTTGAATGATTTCACAGTCAA-------TGTCAAAGTAACTAAAAG--TACTAATTTGCTGTTCTA--TTA---AAAAC----AATCTCG-------GAG-AAGGACCCCCC-CCCC-CCCCCCCCCCCCCACCCCACAAGTATGTACAAAGGGGACA--ACCCT--------CCT-TCTCTAGGCGTATTCTCAAAAAC---CATCTAAGAACGCCCCTaacaggtatatactcaaaatccaactaggaa
gi|7 : GCCCGGGCGTACAACTCG--GGAGTTGAATGTGGAAA--ATTGAA-ACAA-GGTT--AAAATGCGAAAAA-----TGTAATGAAA---AAT---AAAGTTGAA---G--A-----TGGCTA-TGGAATATGCGGTTCGTAT-TTTAA--G--AAATAGAAAAC-CAGTATGATTT-CGGGCAA-TTTGAATGACTTTACAGTCCG-------TGTCAAAGTCGCT-AAAAT-TACTCATTTGCAGgtttta
gi|8 : tGGGC----TTTCCTAGGTGTA-TCCTATACGTCTGGGCTTATAATTCA--G-AGTTGTATGTGGGAA--AT--AAAAAAA-GGTT--AAAATGCGAAAAA-----TGTAATAA-A---AAT---GAAGCCGAA---G--G-----GAG-TA-TGAAGTAAAGGGTTCGTCA-TT-AA--GTAGAATAGAAATC-C-GTAAAATTT-C
gi|9 : tacAAGGGT----GTTCCTAGGCATTCTCCTATATGACCAGGCCTATAACT----G-A-TTGAATGTGGAAA--AT--AA-AAAA-GGTT--TAAATGCCAAAAA-----TGAAATAA-A---AAT---GAAGCCGAA-------------AG-CA----GGTAAGGGGTTAGTGC-T
Alignments
lowQualScore : 111111 2 1111111111 33333333333333333333333333333 1111111 1111 66666666666666666666666666666666666666666666666 1111 11 111
lowQualScore : 8888 88 3 7 222222 4 0 8 55 3 5 3 3 555 7777777777 6 3 44444444444444444444444444444 3 4 1 4444444 4 66 888 0000 00000000000000000000000000000000000000000000000 5 1 4444 2 7 1 6 00 3 2 111 3 0
lowQualScore : .... .. . . ...... . . . .. . . . . ... .......... . . ............................. . . . ....... . .. ... .... ............................................... . . .... . . . . .. . . ... . .
lowQualScore : 5555 66 6 0 333333 0 7 0 55 6 5 6 6 888 6666666666 7 3 55555555555555555555555555555 6 4 7 4444444 4 99 888 6666 55555555555555555555555555555555555555555555555 2 0 2222 5 2 0 7 33 7 5 777 7 2
consensus : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AA-AAAA-GGTT--AAAATGCGAAAA-ATGCAAT-AA-AAAT---GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
Reference ( family-1805 ) : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AA-AAAA-GGTT--AAAATGCGAAAA-ATG-AAT-AA-AAAT---GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
gi|1 : AGGGGC----GTTCCTAAACAAACTCATATACGCCCAGGCCTATAACTCA--G-AGTAAAATAAGGAAA--GT--AA-AA---GGAT--AGAATGCAAAAATCTGCAAT-AA-AA----------CG------------GGG-TA-AGGGGTAAGGGTTTTGTAC-TTTAG--G--AAATAGAAAAC-CTGTATTATAT-CGGGCAC-TTTGAATGACGTCAAAGTCCG-------TATCAAATGCGTTAGAAAC-TACTCATTTACAGTTCTA--TTATGGAAAAA----AATCTTA-------GGGAGAGGA-------TCCC-AACT----------CCCTACAAGCAGG----ACGGAGACAATATCCTCC-GAAATACT--CCCCGGGCGTACACTAAATAAA---CATCTAAGAA-GCCGCT
gi|10 : cGGGGC----GTTACTAGGCATACTCCTACACGACCGGGCGTATAACTCA--G-GGTTGAATGTGGCAAT-TT--AA-AACG-GGTT--AAAATGCGTAAA-ATGCAAT-AA-AAAT---GAAGCCGAA-C--GTAGTAGGG-TA-TGTGGTAAGCGATTCGTGgtctgcggtaacattgatagatgcatgaaac
gi|11 : tAAA-ATGCAAC-AA-AAAT---GAAGCCAAATG--G-----GGA-TA-TGGGGTCAGGGGTTCGTGC---------------------------A-AATTT-CAAGCAA-TTTGAATGACTTCACAGTCCT-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCTGTTTTA---AAAAA----
gi|12 : AGGGGC----GATCCTAGACATACTCCTATATGCCCGAGCGTATTACTCA--G-AGTTGAGTGTGGATA--AT--AA-AAAA-GGTT--AAAATGCAAAGA-AT---AT-AGTAAATCTAGAAACCGAA-GGAG-----GAG-TATTGGGGTGAGAGtcatt
gi|13 : AACC-C-GTATAATTT-TGGGCAA-TTTGAATGACTTGACAGTCTG-------TGTCAAAGTCACTAAGAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------
gi|14 : gtactttgtaaaatgacatctccac-GATGACCCCAC-CCCT-------------------GCAAGTAGG----AG--------TACCCTTCTCACACCCTTCCCCCAGGCGTATACTCAAAAAC---CATCTAGGAACGCaaccct
gi|15 : ---GAAGCCGAA-G--G-----GCG-TA-TGGAGTAAAGGGTTCGTCCTTT-AGTAG--ATATAGAAATC-C-GGA-AATTT-acttg
gi|16 : AGGGGCAGCGGTTCCTAGACATACTCCTAAACGCACGGGCGTATAACTCA--G-AGTCGAACGTtacgg
gi|2 : gccGGC----GTTCCTAGACATACTCCTATATACCTGGGGGTATAAC--------AT-GAACA-GGAAA--GT--AA-AAAAAGGTTGAAAAAGGCAAAAA-ATG-CAA-AA-AAGT---GAATTTG---T--G-----GGG-TA-TGGTGTA-TGGATATGTGC-T----------AAT-------------TAATTT-TGGGCAT-TTTAAACATCTTCACAGTTCACAGTACATGTCAAAGTTGCTAAAAAC-AACTCATTTGCAGGT-TA--ATA---AAAAATCTCGA----G-------GGG-GGGGGGGAAGA-CCCC-AACT----------CCCAGCAAGTAGG----AGGGGGACACCACCTTCC-CACACCCT-TCTTTGGGCTTATGCTCAAAAAA---CATCTAGGAACGCCTCT
gi|3 : tAGGGGC----GTTCTTAGGCATACTCCTATGCACCCAGTCGTATAACTCGC-G-TGTCAAATGTGGACA--AT--AA-AACACGGTT--AAAATGTAAAAA-A----------AAAT---GAAGCCAAA-G--G-----GGGCTA-TGGGGTAAGGGGTTCGTGC-TTCAG--G--AAATAGAAAGC-CTGTATAATTT-CGGACAA-TTTG-ACGACTTCACAGTATG-------TATCAAAGTCGCTATAAAC-TACTTATTTGTAGTTCTA--TTA---AAGAC----AA----A-------AAG-GATGACCCCACACCCCGAACT----------CTCCGCAAACATG----AGGGGGACAACCCCCTCT-CACACCCT-CCCCCGGGTGTATACT-AAAAAA---CATCTAGGAATGCCCCTgtcagtttacagatgcttgtaaa
gi|4 : AGGGAC----GTTCCTAGGCATACTCCTATATGCCTGGGTG-AAAACTCA--G-AGTTGAATGTGGAA-------AA-AAAA-AGTT--ATCATGTGAAAA-ATGCAAT-AG-AAAT---GAAGTTGAA-T--G-------------GGGGTAAGGGGTTTATGC----------------------------TAATTT-CGGACAA-TTTCAACGACTTCACAGTCTG-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCCA--TTA---CAGAA----AA----A--------------------------T-AATC----------CTCAGCAAGTATA----AGGGGGA-AACACCCTCC-CACACCCT-CACC--AGCATATACACAAAAAAACCCATCTAGGAATGC
gi|5 : cAGGGGC----TATCCTTGTCAGACTCCT--------GGGCGCATAACTCAAAG-AGTTCAATGTGGAAATGA---AA-AAAA-TGTT--AAAATGCGAAAA-A----------AGAT---G---TTGAA-GT-G-----GGA-TA-TAAAATAGAG---TC------T-AG--G--G--TAGAAAACTC-ATATAATTT-TGAGCAAATTTAAAAGACTTCACTGTCCA-------T-TTAAAGTCGC-AAAAACATACTCATTTGCAGTTCTA--CTA---AAGAA----AA----ATTTTTCGGGG-GAAACCCCCAC-C
gi|6 : acatt-AG--G--AAACAGAAAAC-C-TTTCTGTTTGCGAGCAA-TTTGAATGATTTCACAGTCAA-------TGTCAAAGTAACTAAAAG--TACTAATTTGCTGTTCTA--TTA---AAAAC----AATCTCG-------GAG-AAGGACCCCCC-CCCC-CCCCCCCCCCCCCACCCCACAAGTATGTACAAAGGGGACA--ACCCT--------CCT-TCTCTAGGCGTATTCTCAAAAAC---CATCTAAGAACGCCCCTaacaggtatatactcaaaatccaactaggaa
gi|7 : GCCCGGGCGTACAACTCG--GGAGTTGAATGTGGAAA--ATTGAA-ACAA-GGTT--AAAATGCGAAAA-ATGTAATGAA-AAAT---AAAGTTGAA-G--A-----TGGCTA-TGGAATATGCGGTTCGTAT-TTTAA--G--AAATAGAAAAC-CAGTATGATTT-CGGGCAA-TTTGAATGACTTTACAGTCCG-------TGTCAAAGTCGCT-AAAAT-TACTCATTTGCAGgtttta
gi|8 : tGGGC----TTTCCTAGGTGTA-TCCTATACGTCTGGGCTTATAATTCA--G-AGTTGTATGTGGGAA--AT--AAAAAAA-GGTT--AAAATGCGAAAA-ATGTAAT-AA-AAAT---GAAGCCGAA-G--G-----GAG-TA-TGAAGTAAAGGGTTCGTCA-TT-AA--GTAGAATAGAAATC-C-GTAAAATTT-C
gi|9 : tacAAGGGT----GTTCCTAGGCATTCTCCTATATGACCAGGCCTATAACT----G-A-TTGAATGTGGAAA--AT--AA-AAAA-GGTT--TAAATGCCAAAA-ATGAAAT-AA-AAAT---GAAGCCGAA-----------AG-CA----GGTAAGGGGTTAGTGC-T
Alignments
lowQualScore : 111111 1111111111 33333333333333333333333333333 1111111 1111 66666666666666666666666666666666666666666666666 1111 11 111
lowQualScore : 8888 88 3 7 222222 44 8 55 3 1 44 3 7777777777 6 3 44444444444444444444444444444 3 4 1 4444444 4 66 888 0000 00000000000000000000000000000000000000000000000 5 1 4444 2 7 1 6 00 3 2 111 3 0
lowQualScore : .... .. . . ...... .. . .. . . .. . .......... . . ............................. . . . ....... . .. ... .... ............................................... . . .... . . . . .. . . ... . .
lowQualScore : 5555 66 6 0 444444 77 0 55 6 2 88 3 6666666666 7 3 55555555555555555555555555555 6 4 7 4444444 4 99 888 6666 55555555555555555555555555555555555555555555555 2 0 2222 5 2 0 7 33 7 5 777 7 2
consensus : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
Reference ( family-1805 ) : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
gi|1 : AGGGGC----GTTCCTAAACAAACTCATATACGCCCAGGCCTATAACTCA--G-AGTAAAATAAGGAAA--GT--AAAA----GGAT--AGAATGCAAAAATCTGCAAT-AAAA--------CG------------GGG-TA-AGGGGTAAGGGTTTTGTAC-TTTAG--G--AAATAGAAAAC-CTGTATTATAT-CGGGCAC-TTTGAATGACGTCAAAGTCCG-------TATCAAATGCGTTAGAAAC-TACTCATTTACAGTTCTA--TTATGGAAAAA----AATCTTA-------GGGAGAGGA-------TCCC-AACT----------CCCTACAAGCAGG----ACGGAGACAATATCCTCC-GAAATACT--CCCCGGGCGTACACTAAATAAA---CATCTAAGAA-GCCGCT
gi|10 : cGGGGC----GTTACTAGGCATACTCCTACACGACCGGGCGTATAACTCA--G-GGTTGAATGTGGCAAT-TT--AAAA-CG-GGTT--AAAATGCGTAAA-ATGCAAT-AAAAAT-GAAGCCGAA-C--GTAGTAGGG-TA-TGTGGTAAGCGATTCGTGgtctgcggtaacattgatagatgcatgaaac
gi|11 : tAAA-ATGCAAC-AAAAAT-GAAGCCAAATG--G-----GGA-TA-TGGGGTCAGGGGTTCGTGC---------------------------A-AATTT-CAAGCAA-TTTGAATGACTTCACAGTCCT-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCTGTTTTA---AAAAA----
gi|12 : AGGGGC----GATCCTAGACATACTCCTATATGCCCGAGCGTATTACTCA--G-AGTTGAGTGTGGATA--AT--AAAA-AA-GGTT--AAAATGCAAAGA-ATATAGT-AAATCTAGAAACCGAA-GGAG-----GAG-TATTGGGGTGAGAGtcatt
gi|13 : AACC-C-GTATAATTT-TGGGCAA-TTTGAATGACTTGACAGTCTG-------TGTCAAAGTCACTAAGAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------
gi|14 : gtactttgtaaaatgacatctccac-GATGACCCCAC-CCCT-------------------GCAAGTAGG----AG--------TACCCTTCTCACACCCTTCCCCCAGGCGTATACTCAAAAAC---CATCTAGGAACGCaaccct
gi|15 : -GAAGCCGAA-G--G-----GCG-TA-TGGAGTAAAGGGTTCGTCCTTT-AGTAG--ATATAGAAATC-C-GGA-AATTT-acttg
gi|16 : AGGGGCAGCGGTTCCTAGACATACTCCTAAACGCACGGGCGTATAACTCA--G-AGTCGAACGTtacgg
gi|2 : gccGGC----GTTCCTAGACATACTCCTATATACCTGGGGGTATAAC--------AT-GAACA-GGAAA--GT--AAAA-AAAGGTTGAAAAAGGCAAAAA-ATGCAA--AAAAGT-GAATTTG---T--G-----GGG-TA-TGGTGTA-TGGATATGTGC-T----------AAT-------------TAATTT-TGGGCAT-TTTAAACATCTTCACAGTTCACAGTACATGTCAAAGTTGCTAAAAAC-AACTCATTTGCAGGT-TA--ATA---AAAAATCTCGA----G-------GGG-GGGGGGGAAGA-CCCC-AACT----------CCCAGCAAGTAGG----AGGGGGACACCACCTTCC-CACACCCT-TCTTTGGGCTTATGCTCAAAAAA---CATCTAGGAACGCCTCT
gi|3 : tAGGGGC----GTTCTTAGGCATACTCCTATGCACCCAGTCGTATAACTCGC-G-TGTCAAATGTGGACA--AT--AAAA-CACGGTT--AAAATGTAAAAA-A---------AAAT-GAAGCCAAA-G--G-----GGGCTA-TGGGGTAAGGGGTTCGTGC-TTCAG--G--AAATAGAAAGC-CTGTATAATTT-CGGACAA-TTTG-ACGACTTCACAGTATG-------TATCAAAGTCGCTATAAAC-TACTTATTTGTAGTTCTA--TTA---AAGAC----AA----A-------AAG-GATGACCCCACACCCCGAACT----------CTCCGCAAACATG----AGGGGGACAACCCCCTCT-CACACCCT-CCCCCGGGTGTATACT-AAAAAA---CATCTAGGAATGCCCCTgtcagtttacagatgcttgtaaa
gi|4 : AGGGAC----GTTCCTAGGCATACTCCTATATGCCTGGGTGAA-AACTCA--G-AGTTGAATGTGGAAA--A-----AA-AA-AGTT--ATCATGTGAAAA-ATGCAAT-AGAAAT-GAAGTTGAA-T--G-------------GGGGTAAGGGGTTTATGC----------------------------TAATTT-CGGACAA-TTTCAACGACTTCACAGTCTG-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCCA--TTA---CAGAA----AA----A--------------------------T-AATC----------CTCAGCAAGTATA----AGGGGGA-AACACCCTCC-CACACCCT-CACC--AGCATATACACAAAAAAACCCATCTAGGAATGC
gi|5 : cAGGGGC----TATCCTTGTCAGACTCCT--------GGGCGCATAACTCAAAG-AGTTCAATGTGGAAATGA---AAAA-AA-TGTT--AAAATGCGAAAA-A---------AGAT-G---TTGAA-GT-G-----GGA-TA-TAAAATAGAG---TC------T-AG--G--G--TAGAAAACTC-ATATAATTT-TGAGCAAATTTAAAAGACTTCACTGTCCA-------T-TTAAAGTCGC-AAAAACATACTCATTTGCAGTTCTA--CTA---AAGAA----AA----ATTTTTCGGGG-GAAACCCCCAC-C
gi|6 : acatt-AG--G--AAACAGAAAAC-C-TTTCTGTTTGCGAGCAA-TTTGAATGATTTCACAGTCAA-------TGTCAAAGTAACTAAAAG--TACTAATTTGCTGTTCTA--TTA---AAAAC----AATCTCG-------GAG-AAGGACCCCCC-CCCC-CCCCCCCCCCCCCACCCCACAAGTATGTACAAAGGGGACA--ACCCT--------CCT-TCTCTAGGCGTATTCTCAAAAAC---CATCTAAGAACGCCCCTaacaggtatatactcaaaatccaactaggaa
gi|7 : GCCCGGGCGTACAACTCG--GGAGTTGAATGTGGAAA--ATTGAAAC-AA-GGTT--AAAATGCGAAAA-ATGTAATGAAAAAT-AAAGTTGAA-G--A-----TGGCTA-TGGAATATGCGGTTCGTAT-TTTAA--G--AAATAGAAAAC-CAGTATGATTT-CGGGCAA-TTTGAATGACTTTACAGTCCG-------TGTCAAAGTCGCT-AAAAT-TACTCATTTGCAGgtttta
gi|8 : tGGGC----TTTCCTAGGTGTA-TCCTATACGTCTGGGCTTATAATTCA--G-AGTTGTATGTGGGAA--AT--AAAAAAA-GGTT--AAAATGCGAAAA-ATGTAAT-AAAAAT-GAAGCCGAA-G--G-----GAG-TA-TGAAGTAAAGGGTTCGTCA-TT-AA--GTAGAATAGAAATC-C-GTAAAATTT-C
gi|9 : tacAAGGGT----GTTCCTAGGCATTCTCCTATATGACCAGGCCTATAACT----G-A-TTGAATGTGGAAA--AT--AAAA-AA-GGTT--TAAATGCCAAAA-ATGAAAT-AAAAAT-GAAGCCGAA-----------AG-CA----GGTAAGGGGTTAGTGC-T
Alignments
lowQualScore : 111111 1111111111 33333333333333333333333333333 1111111 1111 66666666666666666666666666666666666666666666666 1111 11 111
lowQualScore : 8888 88 3 7 222222 44 8 55 3 1 44 3 7777777777 6 3 44444444444444444444444444444 3 4 1 4444444 4 66 888 0000 00000000000000000000000000000000000000000000000 5 1 4444 2 7 1 6 00 3 2 111 3 0
lowQualScore : .... .. . . ...... .. . .. . . .. . .......... . . ............................. . . . ....... . .. ... .... ............................................... . . .... . . . . .. . . ... . .
lowQualScore : 5555 66 6 0 444444 77 0 55 6 2 88 3 6666666666 7 3 55555555555555555555555555555 6 4 7 4444444 4 99 888 6666 55555555555555555555555555555555555555555555555 2 0 2222 5 2 0 7 33 7 5 777 7 2
consensus : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
Reference ( family-1805 ) : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
gi|1 : AGGGGC----GTTCCTAAACAAACTCATATACGCCCAGGCCTATAACTCA--G-AGTAAAATAAGGAAA--GT--AAAA----GGAT--AGAATGCAAAAATCTGCAAT-AAAA--------CG------------GGG-TA-AGGGGTAAGGGTTTTGTAC-TTTAG--G--AAATAGAAAAC-CTGTATTATAT-CGGGCAC-TTTGAATGACGTCAAAGTCCG-------TATCAAATGCGTTAGAAAC-TACTCATTTACAGTTCTA--TTATGGAAAAA----AATCTTA-------GGGAGAGGA-------TCCC-AACT----------CCCTACAAGCAGG----ACGGAGACAATATCCTCC-GAAATACT--CCCCGGGCGTACACTAAATAAA---CATCTAAGAA-GCCGCT
gi|10 : cGGGGC----GTTACTAGGCATACTCCTACACGACCGGGCGTATAACTCA--G-GGTTGAATGTGGCAAT-TT--AAAA-CG-GGTT--AAAATGCGTAAA-ATGCAAT-AAAAAT-GAAGCCGAA-C--GTAGTAGGG-TA-TGTGGTAAGCGATTCGTGgtctgcggtaacattgatagatgcatgaaac
gi|11 : tAAA-ATGCAAC-AAAAAT-GAAGCCAAATG--G-----GGA-TA-TGGGGTCAGGGGTTCGTGC---------------------------A-AATTT-CAAGCAA-TTTGAATGACTTCACAGTCCT-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCTGTTTTA---AAAAA----
gi|12 : AGGGGC----GATCCTAGACATACTCCTATATGCCCGAGCGTATTACTCA--G-AGTTGAGTGTGGATA--AT--AAAA-AA-GGTT--AAAATGCAAAGA-ATATAGT-AAATCTAGAAACCGAA-GGAG-----GAG-TATTGGGGTGAGAGtcatt
gi|13 : AACC-C-GTATAATTT-TGGGCAA-TTTGAATGACTTGACAGTCTG-------TGTCAAAGTCACTAAGAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------
gi|14 : gtactttgtaaaatgacatctccac-GATGACCCCAC-CCCT-------------------GCAAGTAGG----AG--------TACCCTTCTCACACCCTTCCCCCAGGCGTATACTCAAAAAC---CATCTAGGAACGCaaccct
gi|15 : -GAAGCCGAA-G--G-----GCG-TA-TGGAGTAAAGGGTTCGTCCTTT-AGTAG--ATATAGAAATC-C-GGA-AATTT-acttg
gi|16 : AGGGGCAGCGGTTCCTAGACATACTCCTAAACGCACGGGCGTATAACTCA--G-AGTCGAACGTtacgg
gi|2 : gccGGC----GTTCCTAGACATACTCCTATATACCTGGGGGTATAAC--------AT-GAACA-GGAAA--GT--AAAA-AAAGGTTGAAAAAGGCAAAAA-ATGCAA--AAAAGT-GAATTTG---T--G-----GGG-TA-TGGTGTA-TGGATATGTGC-T----------AAT-------------TAATTT-TGGGCAT-TTTAAACATCTTCACAGTTCACAGTACATGTCAAAGTTGCTAAAAAC-AACTCATTTGCAGGT-TA--ATA---AAAAATCTCGA----G-------GGG-GGGGGGGAAGA-CCCC-AACT----------CCCAGCAAGTAGG----AGGGGGACACCACCTTCC-CACACCCT-TCTTTGGGCTTATGCTCAAAAAA---CATCTAGGAACGCCTCT
gi|3 : tAGGGGC----GTTCTTAGGCATACTCCTATGCACCCAGTCGTATAACTCGC-G-TGTCAAATGTGGACA--AT--AAAA-CACGGTT--AAAATGTAAAAA-A---------AAAT-GAAGCCAAA-G--G-----GGGCTA-TGGGGTAAGGGGTTCGTGC-TTCAG--G--AAATAGAAAGC-CTGTATAATTT-CGGACAA-TTTG-ACGACTTCACAGTATG-------TATCAAAGTCGCTATAAAC-TACTTATTTGTAGTTCTA--TTA---AAGAC----AA----A-------AAG-GATGACCCCACACCCCGAACT----------CTCCGCAAACATG----AGGGGGACAACCCCCTCT-CACACCCT-CCCCCGGGTGTATACT-AAAAAA---CATCTAGGAATGCCCCTgtcagtttacagatgcttgtaaa
gi|4 : AGGGAC----GTTCCTAGGCATACTCCTATATGCCTGGGTGAA-AACTCA--G-AGTTGAATGTGGAAA--A-----AA-AA-AGTT--ATCATGTGAAAA-ATGCAAT-AGAAAT-GAAGTTGAA-T--G-------------GGGGTAAGGGGTTTATGC----------------------------TAATTT-CGGACAA-TTTCAACGACTTCACAGTCTG-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCCA--TTA---CAGAA----AA----A--------------------------T-AATC----------CTCAGCAAGTATA----AGGGGGA-AACACCCTCC-CACACCCT-CACC--AGCATATACACAAAAAAACCCATCTAGGAATGC
gi|5 : cAGGGGC----TATCCTTGTCAGACTCCT--------GGGCGCATAACTCAAAG-AGTTCAATGTGGAAATGA---AAAA-AA-TGTT--AAAATGCGAAAA-A---------AGAT-G---TTGAA-GT-G-----GGA-TA-TAAAATAGAG---TC------T-AG--G--G--TAGAAAACTC-ATATAATTT-TGAGCAAATTTAAAAGACTTCACTGTCCA-------T-TTAAAGTCGC-AAAAACATACTCATTTGCAGTTCTA--CTA---AAGAA----AA----ATTTTTCGGGG-GAAACCCCCAC-C
gi|6 : acatt-AG--G--AAACAGAAAAC-C-TTTCTGTTTGCGAGCAA-TTTGAATGATTTCACAGTCAA-------TGTCAAAGTAACTAAAAG--TACTAATTTGCTGTTCTA--TTA---AAAAC----AATCTCG-------GAG-AAGGACCCCCC-CCCC-CCCCCCCCCCCCCACCCCACAAGTATGTACAAAGGGGACA--ACCCT--------CCT-TCTCTAGGCGTATTCTCAAAAAC---CATCTAAGAACGCCCCTaacaggtatatactcaaaatccaactaggaa
gi|7 : GCCCGGGCGTACAACTCG--GGAGTTGAATGTGGAAA--ATTGAAAC-AA-GGTT--AAAATGCGAAAA-ATGTAATGAAAAAT-AAAGTTGAA-G--A-----TGGCTA-TGGAATATGCGGTTCGTAT-TTTAA--G--AAATAGAAAAC-CAGTATGATTT-CGGGCAA-TTTGAATGACTTTACAGTCCG-------TGTCAAAGTCGCT-AAAAT-TACTCATTTGCAGgtttta
gi|8 : tGGGC----TTTCCTAGGTGTA-TCCTATACGTCTGGGCTTATAATTCA--G-AGTTGTATGTGGGAA--AT--AAAAAAA-GGTT--AAAATGCGAAAA-ATGTAAT-AAAAAT-GAAGCCGAA-G--G-----GAG-TA-TGAAGTAAAGGGTTCGTCA-TT-AA--GTAGAATAGAAATC-C-GTAAAATTT-C
gi|9 : tacAAGGGT----GTTCCTAGGCATTCTCCTATATGACCAGGCCTATAACT----G-A-TTGAATGTGGAAA--AT--AAAA-AA-GGTT--TAAATGCCAAAA-ATGAAAT-AAAAAT-GAAGCCGAA-----------AG-CA----GGTAAGGGGTTAGTGC-T
blockSeqs : AGCG AA G T ATTG AA A GA . C TG A CGTAGTA C T TTTAGTAGATATAGAAATCCGGA G A T CAGTACA A TT . TCTC TCTCGGAGAAGGACCCCCCCCCCCCCCCCCCCCCCCA A G TACA C C T T TC C C ACC C
blockSeqs : . C . T TTT C C . . C T . GGAG C . TTCAGGAAATAGAAAGCCTGTAT . . T . . . . . AAAGGATGACCCCACACCCCGAACT C G . C A C . T T C . C
blockSeqs : . . . C TGA A . . . T C . TGG . . TTTAAGAAATAGAAAACCAGTAT . . C . . . . . GGGGGGGGGGGAAGACCCCAACT A T . C A C . C C C . T
blockSeqs : . . . C AT A . . . C T . GTG . . TTAAGTAGAATAGAAATCCGTAA . . C . . . . . ATAATC C T . . . C . C T C . T
blockSeqs : . . . T GT C . . . C T . GG . . TAGGGTAGAAAACTCATAT . . C . . . . . . T . . . . . T . . . C
blockSeqs : . . . T AT A . . . T T . TG . . TAATT . . A . . . . .
blockSeqs : . . . T AT A . . . T T . GG . . A . . T . . . . .
blockSeqs : . . . T AT A . . . A . . TG . . T . . T . .
blockSeqs : . . . T A A . . . . . . GA . . .
blockSeqs : . . . . . . . GG . . .
blockSeqs : . . . .
blockSeqCons : A* GG******** *** GGGGGGGGACCCCAACC****************************** C*
originalCons : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AA----A-------GGG-GAGGACCCCAC-CCCC-AACT----------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
finalCons : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAAA-A-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAAGG--------GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA----AAGGGGGGGGACCCCAACC------------------------------CCCCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCTC-CCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
Alignments
lowQualScore : 111111 1111111111 33333333333333333333333333333 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 1111 11 111
lowQualScore : 8888 88 3 7 222222 44 8 55 3 1 44 3 7777777777 6 3 44444444444444444444444444444 3 4 1 4444444 4 66 888 5555555555555555555555555555555555555555555555555555555555555555555555 3 1 4444 2 7 1 6 00 3 2 111 3 0
lowQualScore : .... .. . . ...... .. . .. . . .. . .......... . . ............................. . . . ....... . .. ... ...................................................................... . . .... . . . . .. . . ... . .
lowQualScore : 5555 66 6 0 444444 77 0 55 6 2 88 3 6666666666 7 3 55555555555555555555555555555 6 4 7 4444444 4 99 888 0000000000000000000000000000000000000000000000000000000000000000000000 7 0 2222 5 2 0 7 33 7 5 777 7 2
consensus : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA-----A-----A----G------GGGGAGG-----ACCCCA-ACC----------------CC-------CCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
Reference ( family-1805 ) : AGGGGC----GTTCCTAGGCATACTCCTATACGCCCGGGCGTATAACTCA--G-AGTCGAATGTGGAAA--AT--AAAA-AA-GGTT--AAAATGCGAAAA-ATGCAAT-AAAAAT-GAAGCCGAA-G--G-----GGG-TA-TGGGGTAAGGGGTTCGTGC-TT-AG--G--AAATAGAAANC-C-GTATAATTT-CGGGCAA-TTTGAACGACTTCACAGTCCG-------TGTCAAAGTCGCTAAAAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA-----A-----A----G------GGGGGGG-----ACCCCA-ACC----------------CC-------CCGCAAGTANG----AGGGGGACAACACCCTCC-CACACCCT-CCCCCGGGCGTATACTCAAAAAA---CATCTAGGAACGCCCCT
gi|1 : AGGGGC----GTTCCTAAACAAACTCATATACGCCCAGGCCTATAACTCA--G-AGTAAAATAAGGAAA--GT--AAAA----GGAT--AGAATGCAAAAATCTGCAAT-AAAA--------CG------------GGG-TA-AGGGGTAAGGGTTTTGTAC-TTTAG--G--AAATAGAAAAC-CTGTATTATAT-CGGGCAC-TTTGAATGACGTCAAAGTCCG-------TATCAAATGCGTTAGAAAC-TACTCATTTACAGTTCTA--TTATGGAAAAA-----AATCTTA----G------GGAGAGG-----ATCCCA-ACT----------------CC-------CTACAAGCAGG----ACGGAGACAATATCCTCC-GAAATACT--CCCCGGGCGTACACTAAATAAA---CATCTAAGAA-GCCGCT
gi|10 : cGGGGC----GTTACTAGGCATACTCCTACACGACCGGGCGTATAACTCA--G-GGTTGAATGTGGCAAT-TT--AAAA-CG-GGTT--AAAATGCGTAAA-ATGCAAT-AAAAAT-GAAGCCGAA-C--GTAGTAGGG-TA-TGTGGTAAGCGATTCGTGgtctgcggtaacattgatagatgcatgaaac
gi|11 : tAAA-ATGCAAC-AAAAAT-GAAGCCAAATG--G-----GGA-TA-TGGGGTCAGGGGTTCGTGC---------------------------A-AATTT-CAAGCAA-TTTGAATGACTTCACAGTCCT-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCTGTTTTA---AAAAA-----
gi|12 : AGGGGC----GATCCTAGACATACTCCTATATGCCCGAGCGTATTACTCA--G-AGTTGAGTGTGGATA--AT--AAAA-AA-GGTT--AAAATGCAAAGA-ATATAGT-AAATCTAGAAACCGAA-GGAG-----GAG-TATTGGGGTGAGAGtcatt
gi|13 : AACC-C-GTATAATTT-TGGGCAA-TTTGAATGACTTGACAGTCTG-------TGTCAAAGTCACTAAGAAC-TACTCATTTGCAGTTCTA--TTA---AAGAA-----A-----A----
gi|14 : gtactttgtaaaatgacatctccacG-----ACCCCA---C----------------CC-------CTGCAAGTAGG----AG--------TACCCTTCTCACACCCTTCCCCCAGGCGTATACTCAAAAAC---CATCTAGGAACGCaaaccct
gi|15 : gat-GAAGCCGAA-G--G-----GCG-TA-TGGAGTAAAGGGTTCGTCCTTT-AGTAG--ATATAGAAATC-C-GGA-AATTT-acttg
gi|16 : AGGGGCAGCGGTTCCTAGACATACTCCTAAACGCACGGGCGTATAACTCA--G-AGTCGAACGTtacgg
gi|2 : gccGGC----GTTCCTAGACATACTCCTATATACCTGGGGGTATAAC--------AT-GAACA-GGAAA--GT--AAAA-AAAGGTTGAAAAAGGCAAAAA-ATGCAA--AAAAGT-GAATTTG---T--G-----GGG-TA-TGGTGTA-TGGATATGTGC-T----------AAT-------------TAATTT-TGGGCAT-TTTAAACATCTTCACAGTTCACAGTACATGTCAAAGTTGCTAAAAAC-AACTCATTTGCAGGT-TA--ATA---AAAAATCTCGA-----G----G------GGGGGGGGGAAGACCCCA-ACT----------------CC-------CAGCAAGTAGG----AGGGGGACACCACCTTCC-CACACCCT-TCTTTGGGCTTATGCTCAAAAAA---CATCTAGGAACGCCTCT
gi|3 : tAGGGGC----GTTCTTAGGCATACTCCTATGCACCCAGTCGTATAACTCGC-G-TGTCAAATGTGGACA--AT--AAAA-CACGGTT--AAAATGTAAAAA-A---------AAAT-GAAGCCAAA-G--G-----GGGCTA-TGGGGTAAGGGGTTCGTGC-TTCAG--G--AAATAGAAAGC-CTGTATAATTT-CGGACAA-TTTG-ACGACTTCACAGTATG-------TATCAAAGTCGCTATAAAC-TACTTATTTGTAGTTCTA--TTA---AAGAC-----A-----A----A------AAGGATG-----ACCCCACACC----------------CCGAACTCTCCGCAAACATG----AGGGGGACAACCCCCTCT-CACACCCT-CCCCCGGGTGTATACT-AAAAAA---CATCTAGGAATGCCCCTgtcagtttacagatgcttgtaaa
gi|4 : AGGGAC----GTTCCTAGGCATACTCCTATATGCCTGGGTGAA-AACTCA--G-AGTTGAATGTGGAAA--A-----AA-AA-AGTT--ATCATGTGAAAA-ATGCAAT-AGAAAT-GAAGTTGAA-T--G-------------GGGGTAAGGGGTTTATGC----------------------------TAATTT-CGGACAA-TTTCAACGACTTCACAGTCTG-------TGTCAAAGTCACTAAAAAC-TACTCATTTGCAGTTCCA--TTA---CAGAA-----A-----A----A----------------------TA-ATC----------------CT-------CAGCAAGTATA----AGGGGGA-AACACCCTCC-CACACCCT-CACC--AGCATATACACAAAAAAACCCATCTAGGAATGC
gi|5 : cAGGGGC----TATCCTTGTCAGACTCCT--------GGGCGCATAACTCAAAG-AGTTCAATGTGGAAATGA---AAAA-AA-TGTT--AAAATGCGAAAA-A---------AGAT-G---TTGAA-GT-G-----GGA-TA-TAAAATAGAG---TC------T-AG--G--G--TAGAAAACTC-ATATAATTT-TGAGCAAATTTAAAAGACTTCACTGTCCA-------T-TTAAAGTCGC-AAAAACATACTCATTTGCAGTTCTA--CTA---AAGAA-----A-----A----ATTTTTCGGGGGAA-----ACCCCC-ACC----------------
gi|6 : acatt-AG--G--AAACAGAAAAC-C-TTTCTGTTTGCGAGCAA-TTTGAATGATTTCACAGTCAA-------TGTCAAAGTAACTAAAAG--TACTAATTTGCTGTTCTA--TTA---AAAAC-----A-----ATCTCG------GAGAAGG-----ACCCCC-CCCCCCCCCCCCCCCCCCACC-------CCACAAGTATGTACAAAGGGGACA--ACCCT--------CCT-TCTCTAGGCGTATTCTCAAAAAC---CATCTAAGAACGCCCCTaacaggtatatactcaaaatccaactaggaa
gi|7 : GCCCGGGCGTACAACTCG--GGAGTTGAATGTGGAAA--ATTGAAAC-AA-GGTT--AAAATGCGAAAA-ATGTAATGAAAAAT-AAAGTTGAA-G--A-----TGGCTA-TGGAATATGCGGTTCGTAT-TTTAA--G--AAATAGAAAAC-CAGTATGATTT-CGGGCAA-TTTGAATGACTTTACAGTCCG-------TGTCAAAGTCGCT-AAAAT-TACTCATTTGCAGgtttta
gi|8 : tGGGC----TTTCCTAGGTGTA-TCCTATACGTCTGGGCTTATAATTCA--G-AGTTGTATGTGGGAA--AT--AAAAAAA-GGTT--AAAATGCGAAAA-ATGTAAT-AAAAAT-GAAGCCGAA-G--G-----GAG-TA-TGAAGTAAAGGGTTCGTCA-TT-AA--GTAGAATAGAAATC-C-GTAAAATTT-C
gi|9 : tacAAGGGT----GTTCCTAGGCATTCTCCTATATGACCAGGCCTATAACT----G-A-TTGAATGTGGAAA--AT--AAAA-AA-GGTT--TAAATGCCAAAA-ATGAAAT-AAAAAT-GAAGCCGAA-----------AG-CA----GGTAAGGGGTTAGTGC-T