lowQualScore : 111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 444444444444444444 33 1 4 1 1 11 1 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1111111 111 555555 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111 33333333
lowQualScore : 7 6 5 999999999999999999 00 7 0 5 6 5 22 7 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 0 4444444 4 88888888 99 4 5 7 000 111111 44 55 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 2 2 555 99999999
lowQualScore : . . . .................. .. . . . . . .. . . ........................................................................................................................................... . . ....... . ........ .. . . . ... ...... .. .. ............................................................................................ . . . . ... ........
lowQualScore : 0 0 0 000000000000000000 00 0 0 0 0 0 00 0 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 1 0000000 0 77777777 55 0 4 3 777 555555 66 77 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 0 8 2 222 33333333
consensus : NNCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA-------GTGCANAATAGTCAGTATATGCCCGTAACATGCAGTAACTAAGAANCATATATCAGTTATAGTCATGAGTGTTTCCCTTCAACTTTGNTTTT---------CTA--------TTTTNAGAA-----AC----GGTGACCTTGACCCGATTTAAC-TTAAAACC-AATCC---C----AAG--C-TTCCTTT-TCATGTTAGGAACC-T-ATA--CACAA-AATTTCATCAAA--A-T-ATCTTA---------GG----AA-CTN-AAGTTATCGAGCGGAAA--CC--GTT---TTTTCT-ATTTTTA-GTAACAG-AG----TGACCNTGACCTGATTTACCTCGAAACCAATCGC-AAAC-TTCCTTTTC
Reference ( gi|5 ) : AGCTAGAAATATGTCCATTGTCCGGCTTTAAATA----TTTGCTTCTACATTAAAA-CAGAAGTCAGTTTTGAGTTCTTGACATTTTATTAACCATAATCATGATGTGCAAAA--GTCAATATATGCCTGTAACA---AG--AC--AGAGGCAT--------TATAA--ATGA---TTT---TT--GTTTTATTTTT---------CTA--------TTTTTAGAA-----AC----AGTGACCGTGACCCAATTTAAT-TCAAAATC-AATCC---C----AAG--C-TTTCTTT-TCATATCAGGAACCATGATA--CACAA-TATTTCATCAAA--A-T-GTCTTG-T--T----GGC---AA-CTT-AAGTTATCGAACAGAAA--CT--GTT---TTTTCT-ATTTTTG-GTAACAG-AGACCTTGACCTTGACTTGATGTATCTCTATACCAATCACTAAGT-TTCCTTTTC
gi|11 : CTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA----------CACAA--GT----------CTGTAACATGCAGTAAC--AGA-ACAT--------TATAG--ATGA---T
gi|1 : aGTGCAAAATAGTCAGTATATGCCCAT--CA---AA--ACTAAAAACCATATATCAGTTATAATCATGAGTGTTTCCCTTCAACTTTAATTTTGTATACAAACTACCAACACATTTCCTGAAGTTATAT----GGTGACAATGACCCAA-TTAATCTTAAAACC-GATTC---C----AGT--C-TTCCT-----AAAT-ATGAACC----TACCCATAA-AATTTCA-CA----------CCTGAT--TTTAAGG----AA-ATA-AAATTCTTATGCAGAAA--CT--G-T---TTTTCT-ATTTTTACATACCGGTAG----TAACAATAGCCTGATTTACCTCAAAACCAATCAC-AAAC-TTCCTTTTC
gi|1 : ggTGTTTTT---------CTA--------TTTTTACAT-----ACCGGTAGTAACAATAGCCTGATTTACC-TCAAAACC-AATCA---C----AAA--C-TTCCTTT-TCAT----GCATCC---ATA--TAAAA-TATATCATCAAA--A-T-ATCTT--TAAT----GA----AA-CTA-AAGTTAACAAGTGGAAA--CC--ATT---TTatgcatccatataaaatatatcatcaaaatatctttaatgaaactaaagttaacaagtggaaaccattttccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|3 : gggtgcaaaatagtcagtatatgcccatcaaaactaaaaaccatatatcagttataatcatgagtgtttcccttcaactttaattttgtatacaaactaccaacacatttcctgaagttatatggtgacaatgacccaattaatcttaaaaccgattccagtcttcctaaatatgaacctacccataaaatttcacacctgattttaaggaaataaaattcttatgcagaaacTTTT---------GTA--------TTTT----------------AATGACCTTGACCCGAC---------AAACC-AATCC---CTGGTAAA--C-TTCCTTTATC-T-TTAGTA--TATA--A--CACAA-AATTCCTTTAAA--A-T-ATCT-----------------AA-CTG-AAGTTATCGAGCGGAAA--ccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|2 : tttagagaaaatattgggcagaaaaca---------CTA--------TATTAAGTA-----AT----AGTGACCTTGACCCAGTTTATC-TAAAAACC-AATCCTGGC----AAGAAC----CTTT-TCATATTAGGTATTTT--TA--CATAA-AACTCCATTAAA--A-C-ATTTTG-A--A----TGA---AA-CTT-AAGTTACAGAACAGGAA--acttttcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|6 : aggaatctaaacacaaaatatcatcaaaaatatcttaaagttattgcacagaaaccaataaaC----GGTAACCTTGATCCAATTT-AT-CTAAAATTAAATCT---C-----AG--CATTCCTTT-TCATGTTATGAACC----TA--TACAATTTTTTCATCAG--------------------------------TT-AA---ATCAA--AGAAA--CT--G-T---TTTTCT-ATTTCTatcatttccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|4 : agctgcaaagcagtcaatatacatgtatatacatatatgcccactagaactgtaaactatctatcaaatacagttatgaaagtttctctttaaaggtttgaagttatt----AATGACCTTGACCTGATT-AAC-TTTAAACC-AATCC---T----AGT--C-TTCCTTTGTTATGTTGGGAATC-T-ATA--CACAA-AACTTTACCTGA--T-T-ATCATA-TAGT----GGG---AAGAAA-AAGTCTTTGTGGGGAAA--CC--A-T---TTTTCT-ATTTTAA-GAAAAAG-------TGACCATAACCTGATAAACCACTAAACAACTCCCT-AGC-TTCCATTTatttatacagtcaattttcatcctaaaactaatcccatgctttctttttaagtatctagtataaatcatttcatcaaa
gi|8 : tgcatcaacagtgcaaagcagtcaatatagtatagtataatacgaccataaaaactaataaattaaatatatcaattacactcatgaaagattccttttaaacacaagctgtcaattccctcgacatatctacatatcaaaacacatctACCAAATTTGAT-TTAGAGT--AATCC---C----AAG--C-TTCCATT-TCATATTAGGAA-CAT-ATC--CACAA-AATGTCATTAAA--A-TCATCTTaatagaattttcaatatatctccatgaaaactataggttttcaagcagaaaccattacccatcattcaccccg
gi|14 : cattttcaataagagcaCAAAATC-AATCT---T----AAG--C-TTCCTTG-CCATGTTCGGAA--GTGATC--AACAA-AATTTTATCACA--G-T-ATGTTA-T--T----AACGTAAA-CTA-AACATATAGAGAATAAAGTTT--ATT---TTTTCT-aaggaaataaataaaatatagagtggaagctatgattgagcagcgacccaacttgattcaaagcaaatcctgaaatttcctttccaa
gi|13 : AATT-TATAT---C----AAGT-C-TTTCTTT-TCATATCAGAAGCT---ATA--CCCAA--ATTTCGTTAAA--A-T-GCCTTA---------AG----AA-TTTGAAGTTATATGGCTGAAA--CCAAATT---TGTACTGACTTTTG-AT
gi|9 : acACC-AATCC---C----TAG--G-TTCCTTT-CCA-----GAAACC-T-ATA--CACCA-AATTTCATTAAA--A-T-ATCACA-A--A----GGA---AA-CTG-AAGTTATTG-----AAA--C----------------------------CA--AGACCTTGATCCTGACCTAAATTACCTCGACACCAATCG--AAATATTCCTTT
gi|15 : tttcctaactttaaaacaaagatcttgCTTT-GCATGTCAGGAAC----ATA--CACAA-TATTT-ATCAAATAA-T------------------C---AA-TTT-AAGCAATTGATCAGAAA--CT--GTT---
gi|2 : cAGGAATC-TAA-A--CACAA-AATATCATCAAA--AAT-ATCTTA----------------------AAGTTATTGCACAGAAA--CC--AATAAA----CT-ATATTAA-GTAATAG-------TGACCTTGACCCAGTTTATCTAAAAACCAATC
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GTAACTCAGGTAAAATTAAATGTGCTAGCTTGAAATAAATCCCATTCACAGTATTGTGACAAAAAACCTTGTGTAAACAATGGGATAACATTTGTTTGAGTAATTGAGCAAATGTTGAATAAAACGTTAAATAAAGGGGCATCACTTATGTAATGCAGAGCTGAAGTTCATTCTCATGAAAGGTCTAGTT
Unaligned ( gi|10 ): TGTGTAGTACATACTCATAAATACACGTGGAGCTGAATCCAATCTCATGCGAGGTCTAGTCAAAAGTAACTGTGTGAACAAATTTGAAAATTATCAGGCAACATCTGTTCGAGTTACTCAGTGTATGTTGAATAAA
Unaligned ( gi|12 ): ATAACCTTGTGTAACATTATATGAGAGAGTCTAAAATGCATTCCCATGCAAGGCCTAATGATAAGCAACCTTGTGTAATATAGGTTATTTAGGTTAGCACAATATGTGTTTGAGTTAATGAGTAGAT
Unaligned ( gi|16 ): TGCGGTGTTAAAATTCAATAACATGCAATGTTAAGTGAAAAGCAACTTTCTACACTATTT
Alignments
lowQualScore : 333 2222 1 33333333 11 77777777777777777777777777777777 11 22222222 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888 111111 44444444444444444 111111111111 44444444444 1111 1111111111 33333333333
lowQualScore : 4 2 555 4 2 4444 55 4 5 3 2 4 55555555 1 88 4 33333333333333333333333333333333 44 1 11111111 4 777 00 333 4444444444444444444444444444444444444444444444444444444444444444444444444444444 3 111111 3 555 7777 3 3 6 8888 0 55555 2 0 2 2 99999999999999999 66 44 0 5555 5555555 33 888888888888 3 44444444444 0000 22 6666666666 44444444444 3
lowQualScore : . . ... . . .... .. . . . . . ........ . .. . ................................ .. . ........ . ... .. ... ............................................................................... . ...... . ... .... . . . .... . ..... . . . . ................. .. .. . .... ....... .. ............ . ........... .... .. .......... ........... .
lowQualScore : 0 5 000 0 5 0000 00 0 0 0 5 0 00000000 0 44 6 66666666666666666666666666666666 22 4 44444444 2 888 55 000 4444444444444444444444444444444444444444444444444444444444444444444444444444444 8 999999 6 888 1111 3 3 2 0000 1 99999 9 6 9 9 77777777777777777 99 99 1 7777 2222222 77 333333333333 6 33333333333 6666 99 9999999999 00000000000 4
consensus : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG----C-----AG-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAA-------C--T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTA--NCTTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CC--GTTTTTT---CT-ATTTTTA-GTAACA--AG----TGACCNTGACCCGATTT--ACCTCAAAACCAATC----GC--A--AGCTTCCTTTTC
Reference ( family-1706 ) : NNCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA-------GTGCANAATAGTCAGTATA--TGCC-CGTA---ACATG----C-----AGTAACTAAGAANC---ATATATCAGTTATAGTCATGAGTGTTTCCCTTCAA-------C--T-TTGNTTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCTTGACCCGATTTA--ACTTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CC--GTTTTTT---CT-ATTTTTA-GTAACAG-AG----TGACCNTGACCTGATTT--ACCTCGAAACCAATC----GC--A--AACTTCCTTTTC
gi|1 : -------GTGCAAAATAGTCAGTATA--TGCC-CAT-------------C-----AA-AACTAAAAACC---ATATATCAGTTATAATCATGAGTGTTTCCCTTCAA-------C--T-TTAATTTTGTATACAAACT------ACCAACACATTT-----CCTGAAGTTATAT----G----GTGACAATGACCCAATTAA--TCTTAAAACCGA-TTC---C----AGT-C-TTCCTA---AATAT---GAACC-T-ACC-CATAAAATTTCA-C-ACCTG-ATT-T---T-AA----G-G-AA-AT-AAAAT----TCTTATGC-AGAAA--CT--GTTTTT----CT-ATTTTTACATACCGGTAG----TAACAATAGCCTGATTT--ACCTCAAAACCAATC----AC--A--AACTTCCTTTTC
gi|1 : ggTGTTTTT---------CT------A--------TTT-----TTACAT-----ACCGGTA----GTAACAATAGCCTGATTTA--CCTCAAAACCAA-TCA---C----AAA-C-TTCCTTT-TCATGC-----ATC-C-ATA-TAAAATATATCATC-AAAAT-ATCTT---T-AAT---G-A-AA-CT-AAAGT----TAACAAGT-GGAAA--CC--A--TTTT---CC-ATCCTCA-Gatgcatccatataaaatatatcatcaaaatatctttaatgaaactaaagttaacaagtggaaaccattttccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|11 : gggtgcaaaatagtcagtatatgcccatcaaaactaaaaaccatatatcagttataatcatgagtgtttcccttcaactttaattttgtatacaaactaccaacacatttcctgaagttatatggtgacaatgacccaattaatcttaaaaccgattccagtcttcctaaatatgaacctacccataaaatttcacacctgattttaaggaaataaaattcttatgcagaaacCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA----------CACAA--------------GTC-TGTA---ACATG----C-----AGTAAC--AGAA-C---AT-TATcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|13 : a---C----AAGTC-TTTCTTT-TCATATCAG-AAGC-T-ATA-CCCAAA-TTTCGTT-AAAAT-GCC-T---T-A-----A-G-AATTT-GAAGT----TATATGGC-TGAAA--CCAAATTTGTA---CTGACTTTTagatgat
gi|14 : acaatttatatAAAATCAA-TCT---T----AAG-C-TTCCTTG-CCATGTTCGGAAGT-G-ATC-AACAAAATTTTATC-ACAGT-ATG-T---T-ATTAACGTA-AA-CT-AAACA----TATAGAGA-ATAAAGTTT--ATTTTTT---CT-gat
gi|15 : cCCTTT-GCATGTCAGGAAC----ATA-CACAATATTT-ATC-AAATA-ATC-----------------AA-TT-TAAGC----AATTGATC-AGAAA--CT--GTT
gi|2 : AGGAATC-T-AAA-CACAAAATATCATCAAAAAT-ATC-T---T-A----------------AAGT----TATTGCAC-AGAAA--CC--A----ATAAACT-ATATTAA-GTAAT---AG----TGACCTTGACCCAGTTT--ATCTAAAAACCAATCCTG-GC--AAGAA---CCTTTTC
gi|2 : ---------CT------A--------TAT-----TAAGTA-----AT----A----GTGACCTTGACCCAGTTTA--TCTAAAAACCAA-TCCTGGC----AAG-A--ACCTTT-TCATATTAGGTATT-T-TTA-CATAAAACTCCATT-AAAAC-ATT-T---T-GAAT--G-A-AA-CT-TAAGT----TACAGAACAGGAAA--TC--ATTTatattaggtatttttacataaaactccattaaaacattttgaatgaaacttaagttacagaacaggaaatcatttccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : aggaatctaaacacaaaatatcatcaaaaatatcttaaagttattgcacagaaaccaataaa----TATTGGGC-AGAAA--AC--ATTTTGT------ATTTT-----------AA----TGACCTTGACCCGAC----------AAACCAATCCCTGGT--A--AACTTCCTTTccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : tttagagaaaaTTTT---------GT------A--------TTT-----TAA--------------------TGACCTTGACCCGAC----------AAACCAA-TCC---CTGGTAAA-C-TTCCTTTATC-T-TTAGTA----T-ATAACACAAAATTCCTTT-AAAAT-ATC-T---------------AA-CT-GAAGT----TATCGAGC-GGAAA--AC--TTTTatctttagtatataacacaaaattcctttaaaatatctaactgaagttatcgagcggaaaacttttcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tttagagaaaatattgggcagaaaacaCAACA-------GTGCAAAGCAGTCAATATAG-TATAGTATA---ATACGACCAT-----AAAAACTAATAAATTAAATATATCAATTACACTCATGAAAGATTCCTTTTAAACACAAGC--TGTCAATTCC---------CTCGACATA--------TCTACATATCAAAAC----AC----ATCTAATGACCTTGACCTGA-TTA--ACTTTAAACCAA-TCC---T----AGT-C-TTCCTTTGTTATGTTGGGAATC-T-ATA-CACAAAACTTTACC-TGATT-ATC-A---T-ATAGTGG-G-AAGAA-AAAGT----CTTTGTGG-GGAAA--CC--A-TTTTT---CT-ATTTTAA-G-AA-AA-AG----TGACCATAACCTGATAA--ACCACTAAACAACTC----CC--T--AGCTTCCATTTcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tgcatTTTT---------CT------A--------TTT-----TAAGAA-----AA----A----GTGACCATAACCTGATAAACCACT--AAACAAC-TCC---C----TAG-C-TTCCATT-TAAT--------------------AGAATTT--TC-AATAT-ATC-TCCAT-G-----A-A-AA-CTATAGGT----TTTCAAGC-AGAAA--CC--ATTaatagaattttcaatatatctccatgaaaactataggttttcaagcagaaaccattacccatcattcaccccg
gi|5 : tgcatcaacagtgcaaagcagtcaatatagtatagtataatacgaccataaaaactaataaattaaatatatcaattacactcatgaaagattccttttaaacacaagctgtcaattccctcgacatatctacatatcaaaacacatctaatgaccttgacctgattaactttaaaccaatcctagtcttcctttgttatgttgggaatctatacacaaaactttacctgattatcatatagtgggaagaaaaagtctttgtggggaaaccatCTAGAAATATGTCCATTGTCCGGCTTTAAATA----TTTGCTTCTACATTAAAA-CAGAAGTCAGTTTTGAGTTCTTGACATTTTATTAACCATAATCATGATGTGCAAA--AGTCAATATA--TGCC-TGTA---ACA------------AG--AC--AGAGGC---A--------TTATAA--ATGA---TTT---TT--G-------T--T-TTATTTTT---------CT------A--------TTT-----TTAGAA-----AC----A----GTGACCGTGACCCAATTTA--ATTCAAAATCAA-TCC---C----AAG-C-TTTCTTT-TCATATCAGGAACCATGATA-CACAATATTTCATC-AAAAT-GTC-T---T-GTT---G-GCAA-CT-TAAGT----TATCGAAC-AGAAA--CT--GTTTTTT---CT-ATTTTTG-GTAACAG-AGACCTTGACCTTGACTTGATGT--ATCTCTATACCAATC----ACT-A--AGTTTCCTTTTCacccatcattcaccccg
gi|6 : agTGCAAAGCAGTCAATATACATGTA-TATACATATATG----CCCACTAG-AACTGTAAACT---ATCTATCAAATACAGTTATGAAAGTTTCTCTTTAA-------AGGT-TTGAAGTT-----------------A--------TT------------------C----G----GTAACCTTGATCCAATTTA--TCT-AAAATTAAATCT---C----A-G-CATTCCTTT-TCATGTTATGAACC-T-ATA-C----AATTTTTTC-A---------T---C-A-----G-------T-TAA-------ATCAA---AGAAA--CT--G-TTTTT---CT-ATTTCTA-TTTATAC-AG----TCA----------ATTTTCATCCTAAAACTAATC----CC--A--TGCTTTCTTTT
gi|8 : agcACCAAATTTG--ATTTAGAGT-AA-TCC---C----AAG-C-TTCCATT-TCATATTAGGAACA-T-ATC-CACAAAATGTCATT-AAAATCATC-T---TAA-----G-G-AA-AT-AAA-TAAAATATAGAGT-GGAAG----------------CT-ATGATTG---AGC---AG----CGACCC-AACTTGAT-------TCAAAGCAAATC-----CTGA--AATTTCCTTTCCtaagtatctagtataaatcatttcatcaaa
gi|9 : cattttcaataagagcaACCAA-TCC---C----TAG-G-TTCCTTT-CCA-----GAAACC-T-ATA-CACCAAATTTCATT-AAAAT-ATC-A---C-AAAG--G-A-AA-CT-GAAGT----TATT------GAAA--CC-------------------------AAGAC-CT----TGATCCTGACCTAAATT--ACCTCGACACCAATC----GA--A--ATATTCCTTTaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTAACTCAGGTAAAATTAAATGTGCTAGCTTGAAATAAATCCCATTCACAGTATTGTGACAAAAAACCTTGTGTAAACAATGGGATAACATTTGTTTGAGTAATTGAGCAAATGTTGAATAAAACGTTAAATAAAGGGGCATCACTTATGTAATGCAGAGCTGAAGTTCATTCTCATGAAAGGTCTAGTT
Unaligned ( gi|10 ): TGTGTAGTACATACTCATAAATACACGTGGAGCTGAATCCAATCTCATGCGAGGTCTAGTCAAAAGTAACTGTGTGAACAAATTTGAAAATTATCAGGCAACATCTGTTCGAGTTACTCAGTGTATGTTGAATAAA
Unaligned ( gi|12 ): ATAACCTTGTGTAACATTATATGAGAGAGTCTAAAATGCATTCCCATGCAAGGCCTAATGATAAGCAACCTTGTGTAATATAGGTTATTTAGGTTAGCACAATATGTGTTTGAGTTAATGAGTAGAT
Unaligned ( gi|16 ): TGCGGTGTTAAAATTCAATAACATGCAATGTTAAGTGAAAAGCAACTTTCTACACTATTT
Alignments
lowQualScore : 222 2222 1 33333333 11 11 55555555555555555555555 11 11111 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888 44444444444444444 1111111111111111 6666666666666666666666666 33333333
lowQualScore : 1 1 000 1 1 4444 22 1 5 1 1 1 55555555 0 11 0 99 8 44444444444444444444444 0 44 1 99999 5 44 444 00 3 333 000000000000000000000000000000000000000000000000000000000000000000000000000 1 4 2 55 3 3 555 7777 3 3 6 8888 0 55555 2 0 2 2 99999999999999999 66 44 0 5555 5555555 9999999999999999 3 4 3333333333333333333333333 1 0 4 66 2 66 2 2 22222222 0
lowQualScore : . . ... . . .... .. . . . . . ........ . .. . .. . ....................... . .. . ..... . .. ... .. . ... ........................................................................... . . . .. . . ... .... . . . .... . ..... . . . . ................. .. .. . .... ....... ................ . . ......................... . . . .. . .. . . ........ .
lowQualScore : 0 0 555 0 0 0000 00 0 0 0 0 0 00000000 8 44 8 00 0 66666666666666666666666 8 22 4 22222 4 22 222 55 5 000 666666666666666666666666666666666666666666666666666666666666666666666666666 0 9 6 22 6 6 888 1111 3 3 2 0000 1 99999 9 6 9 9 77777777777777777 99 99 1 7777 2222222 4444444444444444 6 0 1111111111111111111111111 9 1 1 11 0 11 2 4 99999999 2
consensus : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA------CT-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACC-AA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CC--GTTTTTT---CT-ATT-TTNA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
Reference ( family-1706 ) : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAA-------CT-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACC-AA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CC--GTTTTTT---CT-ATT-TTTA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
gi|1 : -------GTGCAAAATAGTCAGTATA--TGCC-CAT-----------C-----A---A-AACTAAAAACC---ATATATCAGTTATAATCATGAGTGTTTCCCTTCAA-------CT-TTAATTTTGTATACAAACT------ACCAACACATTT-----CCTGAAGTTATAT----G----GTGACAATGACCCAATTAATC-TTAAAACC-GA-TTC---C----AGT-C-TTCCTA---AATAT---GAACC-T-ACC-CATAAAATTTCA-C-ACCTG-ATT-T---T-AA----G-G-AA-AT-AAAAT----TCTTATGC-AGAAA--CT--GTTTTT----CT-ATT-TTTACAT-----ACC---GGTAG----TAACAATAGCCT--GATTT--ACCTCAAAACCAATC----AC--AAACTTCCTTTTC
gi|1 : ggAA-------CT-GT--TTTT---------CT------A--------TTT-----TTACAT-----ACCGGTA----GTAACAATAGCCTGATTTACC-TCAAAACC-AA-TCA---C----AAA-C-TTCCTTT-TCATGC-----ATC-C-ATA-TAAAATATATCATC-AAAAT-ATCTT---T-AAT---G-A-AA-CT-AAAGT----TAACAAGT-GGAAA--CC--A--TTTT---CC-ATC-CTCA-GCCTGAGAACATAA--AA----AAAGCATAACCCATGATTT--Aatgcatccatataaaatatatcatcaaaatatctttaatgaaactaaagttaacaagtggaaaccattttccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|11 : gggtgcaaaatagtcagtatatgcccatcaaaactaaaaaccatatatcagttataatcatgagtgtttcccttcaactttaattttgtatacaaactaccaacacatttcctgaagttatatggtgacaatgacccaattaatcttaaaaccgattccagtcttcctaaatatgaacctacccataaaatttcacacctgattttaaggaaataaaattcttatgcagaCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA----------CA-------CAA-------GTC-TGTA---ACATG--C-----A---GTAAC--AGAA-C---AT-TATtattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|13 : a---C----AAGTC-TTTCTTT-TCATATCAG-AAGC-T-ATA-CCCAAA-TTTCGTT-AAAAT-GCC-T---T-A-----A-G-AATTT-GAAGT----TATATGGC-TGAAA--CCAAATTTGTA---CTGACT-TTTagatgat
gi|14 : acaatttatatAAAATC-AA-TCT---T----AAG-C-TTCCTTG-CCATGTTCGGAAGT-G-ATC-AACAAAATTTTATC-ACAGT-ATG-T---T-ATTAACGTA-AA-CT-AAACA----TATAGAGA-ATAAAGTTT--ATTTTTT---CT-gat
gi|15 : cCCTTT-GCATGTCAGGAAC----ATA-CACAATATTT-ATC-AAATA-ATC-----------------AA-TT-TAAGC----AATTGATC-AGAAA--CT--GTT
gi|2 : AGGAATC-T-AAA-CACAAAATATCATCAAAAAT-ATC-T---T-A----------------AAGT----TATTGCAC-AGAAA--CC--A----ATAAACT-ATA-TTAA-GT-----AAT------AG----TGACCTTGACCC--AGTTT--ATCTAAAAACCAATCCTG-GC--AAGA-ACCTTTTC
gi|2 : ---------CT------A--------TAT-----TAAGTA-----AT----A----GTGACCTTGACCCAGTTTATC-TAAAAACC-AA-TCCTGGC----AAG-A--ACCTTT-TCATATTAGGTATT-T-TTA-CATAAAACTCCATT-AAAAC-ATT-T---T-GAAT--G-A-AA-CT-TAAGT----TACAGAACAGGAAA--TC--ATTTatattaggtatttttacataaaactccattaaaacattttgaatgaaacttaagttacagaacaggaaatcatttccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : aggaatctaaacacaaaatatcatcaaaaatatcttaaagttattgcacagaaaccaataaa----TATTGGGC-AGAAA--AC--ATTTTGT------ATT-TT-------------------AA----TGACCTTGACCC--GAC----------AAACCAATCCCTGGT--AAACTTCCTTTccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : tttagagaaaaATTTT---------GT------A--------TTT-----TAA--------------------TGACCTTGACCCGAC---------AAACC-AA-TCC---CTGGTAAA-C-TTCCTTTATC-T-TTAGTA----T-ATAACACAAAATTCCTTT-AAAAT-ATC-T---------------AA-CT-GAAGT----TATCGAGC-GGAAA--AC--TTTTatctttagtatataacacaaaattcctttaaaatatctaactgaagttatcgagcggaaaacttttcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tttagagaaaatattgggcagaaaacCAACA-------GTGCAAAGCAGTCAATATAG-TATAGTATA---ATACGACC-----ATAAA-AACTAATAAATTAAATATATCAATTACACTCATGAAAGATTCCTTTTAAACACAAGCTGTCAATTCC---------CTCGACATA--------TCTACATATCAAAAC----AC----ATCTAATGACCTTGACCTGATT-AAC-TTTAAACC-AA-TCC---T----AGT-C-TTCCTTTGTTATGTTGGGAATC-T-ATA-CACAAAACTTTACC-TGATT-ATC-A---T-ATAGTGG-G-AAGAA-AAAGT----CTTTGTGG-GGAAA--CC--A-TTTTT---CT-ATT-TTAA-G------AAA---A--AG----TGACCATAACCT--GATAA--ACCACTAAACAACTC----CC--TAGCTTCCATTTcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tgcatTTTT---------CT------A--------TTT-----TAAGAA-----AA----A----GTGACCATAACCTGATAAACCACTAAA--C-AACTCC---C----TAG-C-TTCCATT-TAAT--------------------AGAATTT--TC-AATAT-ATC-TCCAT-G-----A-A-AA-CTATAGGT----TTTCAAGC-AGAAA--CC--ATTaatagaattttcaatatatctccatgaaaactataggttttcaagcagaaaccattacccatcattcaccccg
gi|5 : tgcatcaacagtgcaaagcagtcaatatagtatagtataatacgaccataaaaactaataaattaaatatatcaattacactcatgaaagattccttttaaacacaagctgtcaattccctcgacatatctacatatcaaaacacatctaatgaccttgacctgattaactttaaaccaatcctagtcttcctttgttatgttgggaatctatacacaaaactttacctgattatcatatagtgggaagaaaaagtctttgtggggaaaccatCTAGAAATATGTCCATTGTCCGGCTTTAAATA----TTTGCTTCTACATTAAAA-CAGAAGTCAGTTTTGAGTTCTTGACATTTTATTAACCATAATCATGATGTGCAAA--AGTCAATATA--TGCC-TGTA---ACA----------A---G-A-C--AGAGGC---AT--------TATAA--ATGA----TT---TTTG--------TT-TTATTTTT---------CT------A--------TTT-----TTAGAA-----AC----A----GTGACCGTGACCCAATTTAAT-TCAAAATC-AA-TCC---C----AAG-C-TTTCTTT-TCATATCAGGAACCATGATA-CACAATATTTCATC-AAAAT-GTC-T---T-GTT---G-GCAA-CT-TAAGT----TATCGAAC-AGAAA--CT--GTTTTTT---CT-ATT-TTTG-GT-----AAC---AG-AGACCTTGACCTTGACTT--GATGT--ATCTCTATACCAATC----ACT-AAGTTTCCTTTTCacccatcattcaccccg
gi|6 : agTGCAAAGCAGTCAATATACATGTA-TATACATATATG--CCCACTA---G-AACTGTAAACT---ATCTATCAAATACAGTTATGAAAGTTTCTCTTTAAAGG----TT-TGAAGT------------T------A--------TT------------------C----G----GTAACCTTGATCCAATTTATC--TAAAATTAAA-TCT---C-----AG-CATTCCTTT-TCATGTTATGAACC-T-ATA-C----AATTTTTTC-A---------T---C-A-----G-------T-TAA-------ATCAA---AGAAA--CT--G-TTTTT---CT-ATT-TCTA-TT-----TAT---AC-AG----T----------C--AATTTTCATCCTAAAACTAATC----CC--ATGCTTTCTTTT
gi|8 : agcACCAAATTTGAT-TTAGAGT--AA-TCC---C----AAG-C-TTCCATT-TCATATTAGGAACA-T-ATC-CACAAAATGTCATT-AAAATCATC-T---TAA-----G-G-AA-AT-AAA-TAAAATATAGAGT-GGAAG----------------CT-ATGATTGA-GC-----AGC-------------------GACCC--AACTT--GATTCAAAGCAAATC-----CTGAAATTTCCTTTCCtaagtatctagtataaatcatttcatcaaa
gi|9 : cattttcaataagagcaACC-AA-TCC---C----TAG-G-TTCCTTT-CCA-----GAAACC-T-ATA-CACCAAATTTCATT-AAAAT-ATC-A---C-AAAG--G-A-AA-CT-GAAGT----TATT------GAAA--C----------------------------------C---A--AGACCTTGATCCTGACCT--AAATT--ACCTCGACACCAATC----GA--AATATTCCTTTaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTAACTCAGGTAAAATTAAATGTGCTAGCTTGAAATAAATCCCATTCACAGTATTGTGACAAAAAACCTTGTGTAAACAATGGGATAACATTTGTTTGAGTAATTGAGCAAATGTTGAATAAAACGTTAAATAAAGGGGCATCACTTATGTAATGCAGAGCTGAAGTTCATTCTCATGAAAGGTCTAGTT
Unaligned ( gi|10 ): TGTGTAGTACATACTCATAAATACACGTGGAGCTGAATCCAATCTCATGCGAGGTCTAGTCAAAAGTAACTGTGTGAACAAATTTGAAAATTATCAGGCAACATCTGTTCGAGTTACTCAGTGTATGTTGAATAAA
Unaligned ( gi|12 ): ATAACCTTGTGTAACATTATATGAGAGAGTCTAAAATGCATTCCCATGCAAGGCCTAATGATAAGCAACCTTGTGTAATATAGGTTATTTAGGTTAGCACAATATGTGTTTGAGTTAATGAGTAGAT
Unaligned ( gi|16 ): TGCGGTGTTAAAATTCAATAACATGCAATGTTAAGTGAAAAGCAACTTTCTACACTATTT
Alignments
lowQualScore : 222 2222 1 33333333 11 11 55555555555555555555555 11 11111 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777777 44444444444444444 11111111111111 66666666666666666666666 33333333
lowQualScore : 1 1 000 1 1 4444 22 1 5 1 1 1 55555555 0 11 0 99 8 44444444444444444444444 0 44 1 99999 5 44 444 00 3 333 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 4 2 4 5 7 555 7777 3 3 6 8888 0 55555 2 0 2 2 99999999999999999 66 44 0 5555 5555555 66666666666666 55 2 44444444444444444444444 1 0 4 66 2 66 2 2 22222222 0
lowQualScore : . . ... . . .... .. . . . . . ........ . .. . .. . ....................... . .. . ..... . .. ... .. . ... ............................................................................. . . . . . . ... .... . . . .... . ..... . . . . ................. .. .. . .... ....... .............. .. . ....................... . . . .. . .. . . ........ .
lowQualScore : 0 0 555 0 0 0000 00 0 0 0 0 0 00000000 8 44 8 00 0 66666666666666666666666 8 22 4 22222 4 22 222 55 5 000 77777777777777777777777777777777777777777777777777777777777777777777777777777 0 9 6 4 3 3 888 1111 3 3 2 0000 1 99999 9 6 9 9 77777777777777777 99 99 1 7777 2222222 11111111111111 33 6 11111111111111111111111 9 1 1 11 0 11 2 4 99999999 2
consensus : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CCGTTTTTT---CTATT-TTNA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
Reference ( family-1706 ) : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CCGTTTTTT---CTATT-TTNA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
gi|1 : -------GTGCAAAATAGTCAGTATA--TGCC-CAT-----------C-----A---A-AACTAAAAACC---ATATATCAGTTATAATCATGAGTGTTTCCCTTCAA---C------T-TTAATTTTGTATACAAACT------ACCAACACATTT-----CCTGAAGTTATAT----G----GTGACAATGACCCAATTAATC-TTAAAACCGA-TTC---C----AGT-C-TTCCTA---AATAT---GAACC-T-ACC-CATAAAATTTCA-C-ACCTG-ATT-T---T-AA----G-G-AA-AT-AAAAT----TCTTATGC-AGAAA--CTGTTTTT----CTATT-TTTACAT-----ACC---GGTAG----TAACAATAGCCT--GATTT--ACCTCAAAACCAATC----AC--AAACTTCCTTTTC
gi|1 : ggAAA--C------T-GT--TTTT---------CT------A--------TTT-----TTACAT-----ACCGGTA----GTAACAATAGCCTGATTTACC-TCAAAACCAA-TCA---C----AAA-C-TTCCTTT-TCATGC-----ATC-C-ATA-TAAAATATATCATC-AAAAT-ATCTT---T-AAT---G-A-AA-CT-AAAGT----TAACAAGT-GGAAA--CCA--TTTT---CCATC-CTCA-GCCTGAGAACATAA--AA----AAAGCATAACCCATGATTT--Aatgcatccatataaaatatatcatcaaaatatctttaatgaaactaaagttaacaagtggaaaccattttccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|11 : gggtgcaaaatagtcagtatatgcccatcaaaactaaaaaccatatatcagttataatcatgagtgtttcccttcaactttaattttgtatacaaactaccaacacatttcctgaagttatatggtgacaatgacccaattaatcttaaaaccgattccagtcttcctaaatatgaacctacccataaaatttcacacctgattttaaggaaataaaattcttatgcagCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA----------CA-------CAA-------GTC-TGTA---ACATG--C-----A---GTAAC--AGAA-C---AT-TATtattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|13 : a---C----AAGTC-TTTCTTT-TCATATCAG-AAGC-T-ATA-CCCAAA-TTTCGTT-AAAAT-GCC-T---T-A-----A-G-AATTT-GAAGT----TATATGGC-TGAAA--CCagatgat
gi|14 : acaatttatatAAAATCAA-TCT---T----AAG-C-TTCCTTG-CCATGTTCGGAAGT-G-ATC-AACAAAATTTTATC-ACAGT-ATG-T---T-ATTAACGTA-AA-CT-AAACA----TATAGAGA-ATAAAGTTTATTTTTT---CTaaatttgtactgacttttgat
gi|15 : cCCTTT-GCATGTCAGGAAC----ATA-CACAATATTT-ATC-AAATA-ATC-----------------AA-TT-TAAGC----AATTGATC-AGAAA--CTGTT
gi|2 : AGGAATC-T-AAA-CACAAAATATCATCAAAAAT-ATC-T---T-A----------------AAGT----TATTGCAC-AGAAA--CCA----ATAAACTATA-TTAA-GT-----AAT------AG----TGACCTTGACCC--AGTTT--ATCTAAAAACCAATCCTG-GC--AAGA-ACCTTTTC
gi|2 : ---------CT------A--------TAT-----TAAGTA-----AT----A----GTGACCTTGACCCAGTTTATC-TAAAAACCAA-TCCTGGC----AAG-A--ACCTTT-TCATATTAGGTATT-T-TTA-CATAAAACTCCATT-AAAAC-ATT-T---T-GAAT--G-A-AA-CT-TAAGT----TACAGAACAGGAAA--TCATTTatattaggtatttttacataaaactccattaaaacattttgaatgaaacttaagttacagaacaggaaatcatttccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : aggaatctaaacacaaaatatcatcaaaaatatcttaaagttattgcacagaaaccaataaa----TATTGGGC-AGAAA--ACATTTTGT-----ATT-TTAA-----------------------TGACCTTGACCC--GAC----------AAACCAATCCCTGGT--AAACTTCCTTTccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : tttagagaaaaATTTT---------GT------A--------TTT-----TAA--------------------TGACCTTGACCCGAC---------AAACCAA-TCC---CTGGTAAA-C-TTCCTTTATC-T-TTAGTA----T-ATAACACAAAATTCCTTT-AAAAT-ATC-T---------------AA-CT-GAAGT----TATCGAGC-GGAAA--ACTTTTatctttagtatataacacaaaattcctttaaaatatctaactgaagttatcgagcggaaaacttttcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tttagagaaaatattgggcagaaaacCAACA-------GTGCAAAGCAGTCAATATAG-TATAGTATA---ATACGACC-----ATAAA-AACTAATAAATTAAATATATCAATTACACTCATGAAAGATTCCTTTTAAA--CACAAGCTGTCAATTCC---------CTCGACATA--------TCTACATATCAAAAC----AC----ATCTAATGACCTTGACCTGATT-AAC-TTTAAACCAA-TCC---T----AGT-C-TTCCTTTGTTATGTTGGGAATC-T-ATA-CACAAAACTTTACC-TGATT-ATC-A---T-ATAGTGG-G-AAGAA-AAAGT----CTTTGTGG-GGAAA--CCA-TTTTT---CTATT-TTAA-G------AAA---A--AG----TGACCATAACCT--GATAA--ACCACTAAACAACTC----CC--TAGCTTCCATTTcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tgcatTTTT---------CT------A--------TTT-----TAAGAA-----AA----A----GTGACCATAACCTGATAAACCACTAAA--CAACTCC---C----TAG-C-TTCCATT-TAAT--------------------AGAATTT--TC-AATAT-ATC-TCCAT-G-----A-A-AA-CTATAGGT----TTTCAAGC-AGAAA--CCATTaatagaattttcaatatatctccatgaaaactataggttttcaagcagaaaccattacccatcattcaccccg
gi|5 : tgcatcaacagtgcaaagcagtcaatatagtatagtataatacgaccataaaaactaataaattaaatatatcaattacactcatgaaagattccttttaaacacaagctgtcaattccctcgacatatctacatatcaaaacacatctaatgaccttgacctgattaactttaaaccaatcctagtcttcctttgttatgttgggaatctatacacaaaactttacctgattatcatatagtgggaagaaaaagtctttgtggggaaaccatCTAGAAATATGTCCATTGTCCGGCTTTAAATA----TTTGCTTCTACATTAAAA-CAGAAGTCAGTTTTGAGTTCTTGACATTTTATTAACCATAATCATGATGTGCAAA--AGTCAATATA--TGCC-TGTA---ACA----------A---G-A-C--AGAGGC---AT--------TATAA--ATGA----TT---TTTG----T------T-TTATTTTT---------CT------A--------TTT-----TTAGAA-----AC----A----GTGACCGTGACCCAATTTAAT-TCAAAATCAA-TCC---C----AAG-C-TTTCTTT-TCATATCAGGAACCATGATA-CACAATATTTCATC-AAAAT-GTC-T---T-GTT---G-GCAA-CT-TAAGT----TATCGAAC-AGAAA--CTGTTTTTT---CTATT-TTTG-GT-----AAC---AG-AGACCTTGACCTTGACTT--GATGT--ATCTCTATACCAATC----ACT-AAGTTTCCTTTTCacccatcattcaccccg
gi|6 : agTGCAAAGCAGTCAATATACATGTA-TATACATATATG--CCCACTA---G-AACTGTAAACT---ATCTATCAAATACAGTTATGAAAGTTTCTCTTTAAAGGT------T-TGAAGTT------------------A--------TT------------------C----G----GTAACCTTGATCCAATTTATC-T-AAAATTAAATCT---C----A-G-CATTCCTTT-TCATGTTATGAACC-T-ATA-C----AATTTTTTC-A---------T---C-A-----G-------T-TAA-------ATCAA---AGAAA--CTG-TTTTT---CTATT-TCTA-TT-----TAT---AC-AG----T----------C--AATTTTCATCCTAAAACTAATC----CC--ATGCTTTCTTTT
gi|8 : agcACCAAATTTGAT-TTAGAGT-AA-TCC---C----AAG-C-TTCCATT-TCATATTAGGAACA-T-ATC-CACAAAATGTCATT-AAAATCATC-T---TAA-----G-G-AA-AT-AAA-TAAAATATAGAGT-GGAAG--------------CTATGATTGA-GC-----AGC-------------------GACCC--AACTT--GATTCAAAGCAAATC-----CTGAAATTTCCTTTCCtaagtatctagtataaatcatttcatcaaa
gi|9 : cattttcaataagagcaACCAA-TCC---C----TAG-G-TTCCTTT-CCA-----GAAACC-T-ATA-CACCAAATTTCATT-AAAAT-ATC-A---C-AAAG--G-A-AA-CT-GAAGT----TATT------GAAA--C-------------------------------C---A--AGACCTTGATCCTGACCT--AAATT--ACCTCGACACCAATC----GA--AATATTCCTTTaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTAACTCAGGTAAAATTAAATGTGCTAGCTTGAAATAAATCCCATTCACAGTATTGTGACAAAAAACCTTGTGTAAACAATGGGATAACATTTGTTTGAGTAATTGAGCAAATGTTGAATAAAACGTTAAATAAAGGGGCATCACTTATGTAATGCAGAGCTGAAGTTCATTCTCATGAAAGGTCTAGTT
Unaligned ( gi|10 ): TGTGTAGTACATACTCATAAATACACGTGGAGCTGAATCCAATCTCATGCGAGGTCTAGTCAAAAGTAACTGTGTGAACAAATTTGAAAATTATCAGGCAACATCTGTTCGAGTTACTCAGTGTATGTTGAATAAA
Unaligned ( gi|12 ): ATAACCTTGTGTAACATTATATGAGAGAGTCTAAAATGCATTCCCATGCAAGGCCTAATGATAAGCAACCTTGTGTAATATAGGTTATTTAGGTTAGCACAATATGTGTTTGAGTTAATGAGTAGAT
Unaligned ( gi|16 ): TGCGGTGTTAAAATTCAATAACATGCAATGTTAAGTGAAAAGCAACTTTCTACACTATTT
Alignments
lowQualScore : 222 2222 1 33333333 11 11 55555555555555555555555 11 11111 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777777 44444444444444444 11111111111111 66666666666666666666666 33333333
lowQualScore : 1 1 000 1 1 4444 22 1 5 1 1 1 55555555 0 11 0 99 8 44444444444444444444444 0 44 1 99999 5 44 444 00 3 333 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 4 2 4 5 7 555 7777 3 3 6 8888 0 55555 2 0 2 2 99999999999999999 66 44 0 5555 5555555 66666666666666 55 2 44444444444444444444444 1 0 4 66 2 66 2 2 22222222 0
lowQualScore : . . ... . . .... .. . . . . . ........ . .. . .. . ....................... . .. . ..... . .. ... .. . ... ............................................................................. . . . . . . ... .... . . . .... . ..... . . . . ................. .. .. . .... ....... .............. .. . ....................... . . . .. . .. . . ........ .
lowQualScore : 0 0 555 0 0 0000 00 0 0 0 0 0 00000000 8 44 8 00 0 66666666666666666666666 8 22 4 22222 4 22 222 55 5 000 77777777777777777777777777777777777777777777777777777777777777777777777777777 0 9 6 4 3 3 888 1111 3 3 2 0000 1 99999 9 6 9 9 77777777777777777 99 99 1 7777 2222222 11111111111111 33 6 11111111111111111111111 9 1 1 11 0 11 2 4 99999999 2
consensus : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CCGTTTTTT---CTATT-TTNA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
Reference ( family-1706 ) : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CCGTTTTTT---CTATT-TTNA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
gi|1 : -------GTGCAAAATAGTCAGTATA--TGCC-CAT-----------C-----A---A-AACTAAAAACC---ATATATCAGTTATAATCATGAGTGTTTCCCTTCAA---C------T-TTAATTTTGTATACAAACT------ACCAACACATTT-----CCTGAAGTTATAT----G----GTGACAATGACCCAATTAATC-TTAAAACCGA-TTC---C----AGT-C-TTCCTA---AATAT---GAACC-T-ACC-CATAAAATTTCA-C-ACCTG-ATT-T---T-AA----G-G-AA-AT-AAAAT----TCTTATGC-AGAAA--CTGTTTTT----CTATT-TTTACAT-----ACC---GGTAG----TAACAATAGCCT--GATTT--ACCTCAAAACCAATC----AC--AAACTTCCTTTTC
gi|1 : ggAAA--C------T-GT--TTTT---------CT------A--------TTT-----TTACAT-----ACCGGTA----GTAACAATAGCCTGATTTACC-TCAAAACCAA-TCA---C----AAA-C-TTCCTTT-TCATGC-----ATC-C-ATA-TAAAATATATCATC-AAAAT-ATCTT---T-AAT---G-A-AA-CT-AAAGT----TAACAAGT-GGAAA--CCA--TTTT---CCATC-CTCA-GCCTGAGAACATAA--AA----AAAGCATAACCCATGATTT--Aatgcatccatataaaatatatcatcaaaatatctttaatgaaactaaagttaacaagtggaaaccattttccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|11 : gggtgcaaaatagtcagtatatgcccatcaaaactaaaaaccatatatcagttataatcatgagtgtttcccttcaactttaattttgtatacaaactaccaacacatttcctgaagttatatggtgacaatgacccaattaatcttaaaaccgattccagtcttcctaaatatgaacctacccataaaatttcacacctgattttaaggaaataaaattcttatgcagCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA----------CA-------CAA-------GTC-TGTA---ACATG--C-----A---GTAAC--AGAA-C---AT-TATtattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|13 : a---C----AAGTC-TTTCTTT-TCATATCAG-AAGC-T-ATA-CCCAAA-TTTCGTT-AAAAT-GCC-T---T-A-----A-G-AATTT-GAAGT----TATATGGC-TGAAA--CCagatgat
gi|14 : acaatttatatAAAATCAA-TCT---T----AAG-C-TTCCTTG-CCATGTTCGGAAGT-G-ATC-AACAAAATTTTATC-ACAGT-ATG-T---T-ATTAACGTA-AA-CT-AAACA----TATAGAGA-ATAAAGTTTATTTTTT---CTaaatttgtactgacttttgat
gi|15 : cCCTTT-GCATGTCAGGAAC----ATA-CACAATATTT-ATC-AAATA-ATC-----------------AA-TT-TAAGC----AATTGATC-AGAAA--CTGTT
gi|2 : AGGAATC-T-AAA-CACAAAATATCATCAAAAAT-ATC-T---T-A----------------AAGT----TATTGCAC-AGAAA--CCA----ATAAACTATA-TTAA-GT-----AAT------AG----TGACCTTGACCC--AGTTT--ATCTAAAAACCAATCCTG-GC--AAGA-ACCTTTTC
gi|2 : ---------CT------A--------TAT-----TAAGTA-----AT----A----GTGACCTTGACCCAGTTTATC-TAAAAACCAA-TCCTGGC----AAG-A--ACCTTT-TCATATTAGGTATT-T-TTA-CATAAAACTCCATT-AAAAC-ATT-T---T-GAAT--G-A-AA-CT-TAAGT----TACAGAACAGGAAA--TCATTTatattaggtatttttacataaaactccattaaaacattttgaatgaaacttaagttacagaacaggaaatcatttccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : aggaatctaaacacaaaatatcatcaaaaatatcttaaagttattgcacagaaaccaataaa----TATTGGGC-AGAAA--ACATTTTGT-----ATT-TTAA-----------------------TGACCTTGACCC--GAC----------AAACCAATCCCTGGT--AAACTTCCTTTccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : tttagagaaaaATTTT---------GT------A--------TTT-----TAA--------------------TGACCTTGACCCGAC---------AAACCAA-TCC---CTGGTAAA-C-TTCCTTTATC-T-TTAGTA----T-ATAACACAAAATTCCTTT-AAAAT-ATC-T---------------AA-CT-GAAGT----TATCGAGC-GGAAA--ACTTTTatctttagtatataacacaaaattcctttaaaatatctaactgaagttatcgagcggaaaacttttcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tttagagaaaatattgggcagaaaacCAACA-------GTGCAAAGCAGTCAATATAG-TATAGTATA---ATACGACC-----ATAAA-AACTAATAAATTAAATATATCAATTACACTCATGAAAGATTCCTTTTAAA--CACAAGCTGTCAATTCC---------CTCGACATA--------TCTACATATCAAAAC----AC----ATCTAATGACCTTGACCTGATT-AAC-TTTAAACCAA-TCC---T----AGT-C-TTCCTTTGTTATGTTGGGAATC-T-ATA-CACAAAACTTTACC-TGATT-ATC-A---T-ATAGTGG-G-AAGAA-AAAGT----CTTTGTGG-GGAAA--CCA-TTTTT---CTATT-TTAA-G------AAA---A--AG----TGACCATAACCT--GATAA--ACCACTAAACAACTC----CC--TAGCTTCCATTTcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tgcatTTTT---------CT------A--------TTT-----TAAGAA-----AA----A----GTGACCATAACCTGATAAACCACTAAA--CAACTCC---C----TAG-C-TTCCATT-TAAT--------------------AGAATTT--TC-AATAT-ATC-TCCAT-G-----A-A-AA-CTATAGGT----TTTCAAGC-AGAAA--CCATTaatagaattttcaatatatctccatgaaaactataggttttcaagcagaaaccattacccatcattcaccccg
gi|5 : tgcatcaacagtgcaaagcagtcaatatagtatagtataatacgaccataaaaactaataaattaaatatatcaattacactcatgaaagattccttttaaacacaagctgtcaattccctcgacatatctacatatcaaaacacatctaatgaccttgacctgattaactttaaaccaatcctagtcttcctttgttatgttgggaatctatacacaaaactttacctgattatcatatagtgggaagaaaaagtctttgtggggaaaccatCTAGAAATATGTCCATTGTCCGGCTTTAAATA----TTTGCTTCTACATTAAAA-CAGAAGTCAGTTTTGAGTTCTTGACATTTTATTAACCATAATCATGATGTGCAAA--AGTCAATATA--TGCC-TGTA---ACA----------A---G-A-C--AGAGGC---AT--------TATAA--ATGA----TT---TTTG----T------T-TTATTTTT---------CT------A--------TTT-----TTAGAA-----AC----A----GTGACCGTGACCCAATTTAAT-TCAAAATCAA-TCC---C----AAG-C-TTTCTTT-TCATATCAGGAACCATGATA-CACAATATTTCATC-AAAAT-GTC-T---T-GTT---G-GCAA-CT-TAAGT----TATCGAAC-AGAAA--CTGTTTTTT---CTATT-TTTG-GT-----AAC---AG-AGACCTTGACCTTGACTT--GATGT--ATCTCTATACCAATC----ACT-AAGTTTCCTTTTCacccatcattcaccccg
gi|6 : agTGCAAAGCAGTCAATATACATGTA-TATACATATATG--CCCACTA---G-AACTGTAAACT---ATCTATCAAATACAGTTATGAAAGTTTCTCTTTAAAGGT------T-TGAAGTT------------------A--------TT------------------C----G----GTAACCTTGATCCAATTTATC-T-AAAATTAAATCT---C----A-G-CATTCCTTT-TCATGTTATGAACC-T-ATA-C----AATTTTTTC-A---------T---C-A-----G-------T-TAA-------ATCAA---AGAAA--CTG-TTTTT---CTATT-TCTA-TT-----TAT---AC-AG----T----------C--AATTTTCATCCTAAAACTAATC----CC--ATGCTTTCTTTT
gi|8 : agcACCAAATTTGAT-TTAGAGT-AA-TCC---C----AAG-C-TTCCATT-TCATATTAGGAACA-T-ATC-CACAAAATGTCATT-AAAATCATC-T---TAA-----G-G-AA-AT-AAA-TAAAATATAGAGT-GGAAG--------------CTATGATTGA-GC-----AGC-------------------GACCC--AACTT--GATTCAAAGCAAATC-----CTGAAATTTCCTTTCCtaagtatctagtataaatcatttcatcaaa
gi|9 : cattttcaataagagcaACCAA-TCC---C----TAG-G-TTCCTTT-CCA-----GAAACC-T-ATA-CACCAAATTTCATT-AAAAT-ATC-A---C-AAAG--G-A-AA-CT-GAAGT----TATT------GAAA--C-------------------------------C---A--AGACCTTGATCCTGACCT--AAATT--ACCTCGACACCAATC----GA--AATATTCCTTTaa
blockSeqs : A T TCC T T . CT A . G T A TCATGATG GC CA G ACATATATGCCCACTAG TA G ATTAA A AT CTC AA A CCT AACACAAGCTGTCAATTCCCTCGACATATCTACATATCAAAACACATCTA A T C A C C TGG TGGT T A A ATCA CCATG A A C TTATTAACGTA TT AT AAAA AGAACAG GTTTATTTTTT GA C GCCTGAGAACATAAAA A A AT T TC T A CCTGGT
blockSeqs : G GC G . AATACGACCATAAA TG T GC C AA GTT AA T CTC AACTGTTTTTCTATTTTTACATACCGGTA T T T . A A . . . . G GTTC TCC . . . ATATAGTGGG GA A . CAAGTG ACATTTTGT C A GTAACAGAGACCT G T . T . C T CTGGC
blockSeqs : . . . . AACATGCAGT . G CT . . A . . . TTTTATTTTTCTATTTTTAGAAACA T A A . T . . . . . . GTCA GCT . . . TTTAATGA C G . ATGGCT CTGTTTTTT A A TTTATACAG G T . A . T T ACT
blockSeqs : . . . AACAAG . A C . AAGGTTTGAAGTTATTCG T T C . T . . . . . . ATTA GTG . . . TTGAATGA C A . AGAGAA CCAATAAA T A CAAGACCT G A . G . T A CTG
blockSeqs : A T A . C . . . . . . GTTG TCT . . . TCCATGAA T T . TGATCA CCATTTTT T T GTAATAG G T . T . A A CC
blockSeqs : G T T . T . . . . . . ATCA TTT . . . TTGTTGGC C T . TGCACA CTGTTTTT T T GAAAAAG G C . T . C G CC
blockSeqs : T . A . . . . . . . . GTTA TCT . . . ACAAAGGA C G . TGGGCA CCATTTT T G GCAGC . . . T . . . GA
blockSeqs : . . . . . . . . . . ATTA CCT . . . TTAAGG C A . CGAGCG C . . . . . . . .
blockSeqs : . . . . . . TTA CAT . . . TTAAG C T . TGTGGG .
blockSeqs : . . . . . . GC CCT . . . TCAG A T . CAAGCA
blockSeqs : . . . . . . C . . . TTA C A . CGAACA
blockSeqs : . . T . . . T . G . AGAGTG
blockSeqs : . . . . . . . . CAAA
blockSeqs : . T
blockSeqCons : AACATGCAG************** ** GTTA TTAAGG*********** GTAANAG****************
originalCons : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATC-T---T-A-----G-G-AA-CT-NAAGT----TATCGAGC-GGAAA--CCGTTTTTT---CTATT-TTNA-GT-----AAC---A--AG----TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
finalCons : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATAACATGCAG--------------AAC--AGAANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATC-AAAAT-ATCTTAAGG-----------AA-CT-NAAGT----TATCGAGC-GGAAA--CCGTTTTTT---CTATT-TTNAGTAANAG----------------TGACCNTGACCC--GATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTAACTCAGGTAAAATTAAATGTGCTAGCTTGAAATAAATCCCATTCACAGTATTGTGACAAAAAACCTTGTGTAAACAATGGGATAACATTTGTTTGAGTAATTGAGCAAATGTTGAATAAAACGTTAAATAAAGGGGCATCACTTATGTAATGCAGAGCTGAAGTTCATTCTCATGAAAGGTCTAGTT
Unaligned ( gi|10 ): TGTGTAGTACATACTCATAAATACACGTGGAGCTGAATCCAATCTCATGCGAGGTCTAGTCAAAAGTAACTGTGTGAACAAATTTGAAAATTATCAGGCAACATCTGTTCGAGTTACTCAGTGTATGTTGAATAAA
Unaligned ( gi|12 ): ATAACCTTGTGTAACATTATATGAGAGAGTCTAAAATGCATTCCCATGCAAGGCCTAATGATAAGCAACCTTGTGTAATATAGGTTATTTAGGTTAGCACAATATGTGTTTGAGTTAATGAGTAGAT
Unaligned ( gi|16 ): TGCGGTGTTAAAATTCAATAACATGCAATGTTAAGTGAAAAGCAACTTTCTACACTATTT
Alignments
lowQualScore : 222 2222 1 33333333 11 666666666666666666666666666666666666666 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777777 33333333333333 111111 33333333333333333 2222222222 22222222
lowQualScore : 1 1 000 1 1 4444 22 1 5 1 1 1 55555555 8 0 99 8 555555555555555555555555555555555555555 5 44 444 00 3 333 99999999999999999999999999999999999999999999999999999999999999999999999999999 1 4 2 4 5 7 555 7777 3 3 6 8888 0 55555 2 0 3333 555 2 22222222222222 3 44 0 5555 5555555 33 333333 33 4 1 22222222222222222 77 0 1111111111 99999999
lowQualScore : . . ... . . .... .. . . . . . ........ . . .. . ....................................... . .. ... .. . ... ............................................................................. . . . . . . ... .... . . . .... . ..... . . .... ... . .............. . .. . .... ....... .. ...... .. . . ................. .. . .......... ........
lowQualScore : 0 0 555 0 0 0000 00 0 0 0 0 0 00000000 2 8 00 0 222222222222222222222222222222222222222 4 22 222 55 5 000 77777777777777777777777777777777777777777777777777777777777777777777777777777 0 9 6 4 3 3 888 1111 3 3 2 0000 1 99999 9 6 9999 000 9 77777777777777 0 99 1 7777 2222222 77 111111 77 0 0 66666666666666666 11 7 3333333333 88888888
consensus : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACACG--C-----A---G-AACTAAG--AANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATCAAAA-T-A---TC-TTA-------A--GG--AACT-NAAGT----TATCGAGC-GGAAA--CCGTT---TTTTCTATT-TTNA-GTA---ACAG------TGACCNTGACCCGATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
Reference ( family-1706 ) : NNCTAGAANTGTGTCCANTGTCCGGCNTNGAACACTTTTTTGCTTNNACNTTAAAAGCAGAAGTCAGTTTTGANTCCTNGACATTCCATTANCCAAAA-------GTGCAAAGCAGTCAATATA--TGTC-TATA---ACATG--C-----A---G-AAC--AG--AANC---ATATATCAATTACAATCATGAAAGTTTCCCTTTAAA--C------T-TTAATTTT---------CT------A--------TTT-----TNAGAA-----AC----G----GTGACCNTGACCCGATTTANC-TTAAAACCAA-TCC---C----AAG-C-TTCCTTT-TCATGTTAGGAACC-T-ATA-CACAAAATTTCATCAAAA-T-A---TC-TTA-------A--GG--AACT-NAAGT----TATCGAGC-GGAAA--CCGTT---TTTTCTATT-TTNA-GTA---ANAG------TGACCNTGACCCGATTT--ACCTCAAAACCAATC----GC--AAGCTTCCTTTTC
gi|1 : -------GTGCAAAATAGTCAGTATA--TGCC-CAT-----------C-----A---A-AACTAAA--AACC---ATATATCAGTTATAATCATGAGTGTTTCCCTTCAA---C------T-TTAATTTTGTATACAAACT------ACCAACACATTT-----CCTGAAGTTATAT----G----GTGACAATGACCCAATTAATC-TTAAAACCGA-TTC---C----AGT-C-TTCCTA---AATAT---GAACC-T-ACC-CATAAAATTTCA-CACCT-G-A---TT-TTA-------A--GG--AAAT-AAAAT----TCTTATGC-AGAAA--CTGTT---TTT-CTATT-TTTACATACCGGTAG------TAACAATAGCCTGATTT--ACCTCAAAACCAATC----AC--AAACTTCCTTTTC
gi|1 : ggAAA--C------T-GT--TTTT---------CT------A--------TTT-----TTACAT-----ACCGGTA----GTAACAATAGCCTGATTTACC-TCAAAACCAA-TCA---C----AAA-C-TTCCTTT-TCATGC-----ATC-C-ATA-TAAAATATATCATCAAAA-T-A---TCTTTA-------AT-GA--AACT-AAAGT----TAACAAGT-GGAAA--CCA-----TTTTCCATC-CTCA-Gatgcatccatataaaatatatcatcaaaatatctttaatgaaactaaagttaacaagtggaaaccattttccatcctcagcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|11 : gggtgcaaaatagtcagtatatgcccatcaaaactaaaaaccatatatcagttataatcatgagtgtttcccttcaactttaattttgtatacaaactaccaacacatttcctgaagttatatggtgacaatgacccaattaatcttaaaaccgattccagtcttcctaaatatgaacctacccataaaatttcacacctgattttaaggaaataaaattcttatgcagCTAGAATTGTGTCCAGTG---GACATGGAACACTTTTTTGCTTGGACTTTAAAAGCAGAAGTCAGTTTTGATTCCTGGACATTCCATTATCCAAAA---------------CA--CAA-------GTC-TGTA---ACATG--C-----A---GTAAC--AG--AA-C---AT-TATcctgagaacataaaaaaagcataacccatgatttatattgcagtgtggaaattcaatgccattcaaggtaaagtgaaaagcaacattgtgtaccattttgagaagaaccacgcaacatttgtatgagttaatgggcaatgttgacagaacacacacaattttataataattaagggaacaaaactcatgtaacatatgctaagtctgaaatacaattgcctacagacctaaattgagcagatgttgaataaa
gi|13 : a---C----AAGTC-TTTCTTT-TCATATCAG-AAGC-T-ATA-CCCAAA-TTTCGTTAAAA-T-G---CC-TTA-------A--GA--ATTT-GAAGT----TATATGGC-TGAAA--CCagatgat
gi|14 : acaatttatatAAAATCAA-TCT---T----AAG-C-TTCCTTG-CCATGTTCGGAAGT-G-ATC-AACAAAATTTTATCACAG-T-ATGTTA-TTA-------A--CGTAAACT-AAACA----TATAGAGA-ATAAAGTTTATT---TTTTCTaaatttgtactgacttttgat
gi|15 : cCCTTT-GCATGTCAGGAAC----ATA-CACAATATTT-ATCAAA------------TA-------A--TC--AATT-TAAGC----AATTGATC-AGAAA--CTGTT---
gi|2 : AGGAATC-T-AAA-CACAAAATATCATCAAAAAT-A---TC-TTA-------A-------------AGT----TATTGCAC-AGAAA--CCAATAAA----CTATA-TTAA-GTA---ATAG------TGACCTTGACCCAGTTT--ATCTAAAAACCAATCCTG-GC--AAGA-ACCTTTTC
gi|2 : ---------CT------A--------TAT-----TAAGTA-----AT----A----GTGACCTTGACCCAGTTTATC-TAAAAACCAA-TCCTGGC----AAG-A--ACCTTT-TCATATTAGGTATT-T-TTA-CATAAAACTCCATTAAAA-C-A---TT-TTG-------AATGA--AACT-TAAGT----TACAGAACAGGAAA--TCATT---Tatattaggtatttttacataaaactccattaaaacattttgaatgaaacttaagttacagaacaggaaatcatttccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : aggaatctaaacacaaaatatcatcaaaaatatcttaaagttattgcacagaaaccaataaa----TATTGGGC-AGAAA--ACATT---TTGT--ATT-TTAA-----------------TGACCTTGACCCGAC----------AAACCAATCCCTGGT--AAACTTCCTTTccaccggctgggacatataaaacattggcacaactcacgtaaaactgtagtgtgcagctattaatgtggtgttgaaattcaatcccatataatttttattatggtctagtgagaagaatcgggtatctcttatttgagttatggagctgccgtacaataaatatgtaataacttgtgtaacattacacgcgcgagcctgaaacacaatcccttgcaagatctaatgataagtaatcttgagtataaatttgaataaaatcaaacaatgtttgtttgggcaagtgaggggatgttgataaaactgcaattttatggtaaacaaagggatataattcatctcatgtaaaattcaatatgtatgctcagttcctatgcaagagtgttgtta
gi|3 : tttagagaaaaATTTT---------GT------A--------TTT-----TAA--------------------TGACCTTGACCCGAC---------AAACCAA-TCC---CTGGTAAA-C-TTCCTTTATC-T-TTAGTA----T-ATAACACAAAATTCCTTTAAAA-T-A---TC-T----------------AACT-GAAGT----TATCGAGC-GGAAA--ACTTT---Tatctttagtatataacacaaaattcctttaaaatatctaactgaagttatcgagcggaaaacttttcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tttagagaaaatattgggcagaaaacCAACA-------GTGCAAAGCAGTCAATATAG-TATAGTATA---ATACGACC-----ATAAA-AACTAAT--AAATTAAATATATCAATTACACTCATGAAAGATTCCTTTTAAA--CACAAGCTGTCAATTCC---------CTCGACATA--------TCTACATATCAAAAC----AC----ATCTAATGACCTTGACCTGATT-AAC-TTTAAACCAA-TCC---T----AGT-C-TTCCTTTGTTATGTTGGGAATC-T-ATA-CACAAAACTTTACCTGAT-T-A---TC-ATATAGTGGGA--AG--AA---AAAGT----CTTTGTGG-GGAAA--CCA-T---TTTTCTATT-TTAA-GAA---AAAG------TGACCATAACCTGATAA--ACCACTAAACAACTC----CC--TAGCTTCCATTTcccgcacgcccgctcaatacaaaaagtgatataattgacgtaaaaattcaatacgatgtgaaagtttaattttatgcatgataagcaaccttgtatcattttgaaaataatcaggtagcgcttatgagagttatttgtcggttattaaatataacataattgatcaatacatattggagcgtaactcatgtaatattatatacaagggcctgaagagatatccagcgcaaggtcaaatgatgagcaacccgtgtgtgtaaatttgaaatatatgttattta
gi|4 : tgcatTTTT---------CT------A--------TTT-----TAAGAA-----AA----A----GTGACCATAACCTGATAAACCACTAAA--CAACTCC---C----TAG-C-TTCCATT-TAAT--------------------AGAATTT--TCAATA-T-A---TC-TCC-------A--TGAAAACTATAGGT----TTTCAAGC-AGAAA--CCATT---aatagaattttcaatatatctccatgaaaactataggttttcaagcagaaaccattacccatcattcaccccg
gi|5 : tgcatcaacagtgcaaagcagtcaatatagtatagtataatacgaccataaaaactaataaattaaatatatcaattacactcatgaaagattccttttaaacacaagctgtcaattccctcgacatatctacatatcaaaacacatctaatgaccttgacctgattaactttaaaccaatcctagtcttcctttgttatgttgggaatctatacacaaaactttacctgattatcatatagtgggaagaaaaagtctttgtggggaaaccatCTAGAAATATGTCCATTGTCCGGCTTTAAATA----TTTGCTTCTACATTAAAA-CAGAAGTCAGTTTTGAGTTCTTGACATTTTATTAACCATAATCATGATGTGCAAA--AGTCAATATA--TGCC-TGTA---ACA----------A---G-A-C--AG--AGGC---AT--------TATAA--ATGA----TT---TTTG----T------T-TTATTTTT---------CT------A--------TTT-----TTAGAA-----AC----A----GTGACCGTGACCCAATTTAAT-TCAAAATCAA-TCC---C----AAG-C-TTTCTTT-TCATATCAGGAACCATGATA-CACAATATTTCATCAAAA-T-G---TC-TTGTT-----G--GC--AACT-TAAGT----TATCGAAC-AGAAA--CTGTT---TTTTCTATT-TTTG-GTA---ACAGAGACCTTGACCTTGACTTGATGT--ATCTCTATACCAATC----ACT-AAGTTTCCTTTTCacccatcattcaccccg
gi|6 : agTGCAAAGCAGTCAATATACATGTA-TATACATATATG--CCCACTA---G-AAC--TGTAAACT---ATCTATCAAATACAGTTATGAAAGTTTCTCTTTAAAGGT------T-TGAAGTT------------------A--------TT------------------C----G----GTAACCTTGATCCAATTTATC-T-AAAATTAAATCT---C----A-G-CATTCCTTT-TCATGTTATGAACC-T-ATA-C----AATTTTTTC-------A---TC-----------A--G------T-TAA-------ATCAA---AGAAA--CTG-T---TTTTCTATT-TCTATTTAT--ACAG------T----------CAATTTTCATCCTAAAACTAATC----CC--ATGCTTTCTTTT
gi|8 : agcATT-TTCA-ATA---AGAG------CAACCA-AATTTGATTT--------AGAGTAATC----CC--AAGCTTCCATTTCtaagtatctagtataaatcatttcatcaaa
gi|8 : cACCAAATTTGAT-TTAGAGT-AA-TCC---C----AAG-C-TTCCATT-TCATATTAGGAACA-T-ATC-CACAAAATGTCATTAAAA-TCA---TC-TTA-------A--GG--AAAT-AAA-TAAAATATAGAGT-GGAAG--------------CTATGATTGA-G------CAG------CGACCC-AACTTGAT-------TCAAAGCAAATC-----CTGAAATTTCCTTTCCatattaggaacatatccacaaaatgtcattaaaatcatcttaaggaaataaataaaatatagagtggaagctatgattgagcagcgacccaacttgattcaaagcaaatcctgaaatttcctttccaa
gi|9 : cattttcaataagagcaACCAA-TCC---C----TAG-G-TTCCTTT-CCA-----GAAACC-T-ATA-CACCAAATTTCATTAAAA-T-A---TC-ACA-------AAGGA--AACT-GAAGT----TATT------GAAA--CC------------------AA-G-----ACCT------TGATCCTGACCTAAATT--ACCTCGACACCAATC----GA--AATATTCCTTTaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTAACTCAGGTAAAATTAAATGTGCTAGCTTGAAATAAATCCCATTCACAGTATTGTGACAAAAAACCTTGTGTAAACAATGGGATAACATTTGTTTGAGTAATTGAGCAAATGTTGAATAAAACGTTAAATAAAGGGGCATCACTTATGTAATGCAGAGCTGAAGTTCATTCTCATGAAAGGTCTAGTT
Unaligned ( gi|10 ): TGTGTAGTACATACTCATAAATACACGTGGAGCTGAATCCAATCTCATGCGAGGTCTAGTCAAAAGTAACTGTGTGAACAAATTTGAAAATTATCAGGCAACATCTGTTCGAGTTACTCAGTGTATGTTGAATAAA
Unaligned ( gi|12 ): ATAACCTTGTGTAACATTATATGAGAGAGTCTAAAATGCATTCCCATGCAAGGCCTAATGATAAGCAACCTTGTGTAATATAGGTTATTTAGGTTAGCACAATATGTGTTTGAGTTAATGAGTAGAT
Unaligned ( gi|16 ): TGCGGTGTTAAAATTCAATAACATGCAATGTTAAGTGAAAAGCAACTTTCTACACTATTT