lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111
lowQualScore : 111 222222 1111 333333 11111 11111 777777777777777777777777777777777777777777 2222222222222 11111 22 44444444444 22222 222 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1111111 2222222222 444444444444444444444 666666666666666666666666666666666 111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333 1111 1111 222222 11 4444444444444444444444444444444444 2 1 1 4 222 666666666 11
lowQualScore : 99 0 666 2 777777 4444 3 999999 44444 9 00000 55 222222222222222222222222222222222222222222 3 99 1 4444444444444 3 888 3 44444 11 4 8 77777777777 55 66 22222 777 555 00 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 4 4 8 0 2222222 6 1 2222222222 5 000000000000000000000 7777 666 666666666666666666666666666666666 444 55 8 4 4 777 8888 55 55 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 666 5 3 3 55 99999 777 1111 3333 3 5555 55 55 7 999999 666 666 0 4 22 4 5555555555555555555555555555555555 0 3 6 7 7 6 6 0 111 000000000 22 6
lowQualScore : .. . ... . ...... .... . ...... ..... . ..... .. .......................................... . .. . ............. . ... . ..... .. . . ........... .. .. ..... ... ... .. ........................................................................................................................................................................................................................................................................................................................................................................................................................................ . . . . . ....... . . .......... . ..................... .... ... ................................. ... .. . . . ... .... .. .. ................................................................................................... ... . . . .. ..... ... .... .... . .... .. .. . ...... ... ... . . .. . .................................. . . . . . . . . ... ......... .. .
lowQualScore : 00 7 000 5 222222 2222 3 222222 33333 3 00000 55 222222222222222222222222222222222222222222 3 11 9 1111111111111 6 444 6 44444 44 3 6 55555555555 55 99 55555 000 333 22 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 4 4 2 9 1111111 5 9 3333333333 2 000000000000000000000 0000 444 999999999999999999999999999999999 000 55 0 0 0 111 5555 55 55 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 6 6 6 00 77777 444 4444 7777 6 7777 00 00 0 555555 444 444 5 0 33 4 9999999999999999999999999999999999 0 0 0 0 0 0 0 0 000 000000000 00 0
consensus : CATANATATA-ACTNCACCA--AAAAT----AAATTAAGG----GTACC-----CTATATAAATTCTAC-----TGAA--C-------T-------A----------A-------A-------CTGTTC-TGTGGACAAA----CCC-AG-A-AA-G-G-TAAT---TGAAAACG-GTTTTCTGAACCTTGC--ATTGAGT--TAAC--TTAGCTTNAG-CGA---ATTCTTTACAAATATNTTT----T----G----AAA------A------T---G---TTTT-------AAAATTTG---T-------TT---AA--AANAT-CA--TTT--TTA-ACC--AAAATA---TT-----TCTT-GTATT--A-T-----GGAGT-AAT-AAN---TTGAT--TATATG--GTCAATAAA-----------TATGCAAAA--TTTGAAAATAATCTG--ATGTT-G-GA--------TGTAAGA-TA------ATT---A--GNA--T-TTT------AA--A-----------ACG-GTAT---------A------TT---TT------T-----TCGGANAAT--------GG--------TC-CAGT---TCAAC-TG-G-TGTTGTGAAAA---TC-GTTTTTACAANTTAGTTT----TGTTGAA-AGAAC-ATGGTTAAATCTTAAATTGAT----A--AATAAGAACTTTTA----AAGAAAAANAC------AAAATTTTG------AAAAATAT---AAA---TTTTAGGGCAA-A-------AA----C----A-----GTT---TT--T-A-A-ATATGCG-T----T--TAT--TTT-----------TNAT--N-N--T------GT--------------N----AATT-----------NA--ANA----TATA--TTTT--NG-------GTTTA-A-TATTGTTTTTNAAT-A-TAT--TGCC----CATA--CTTGT-NNNAGCAT-T-NTT-TTNG-CAT--AAA--GTATCAGA---GCA---GC---TCCAAAC-TTGTT-TTTAAAAA--N---TACACA----TATACCAT-G-ATGT---AGCACCGTGNGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCA
Reference ( gi|4 ) : CATGAACATA-ACTCCACCA--AAAAT----AAATTGAGG-CA-ATACC-----CTTTATAAATTCTAC-----TGAA--C-------T-------A----------A-------A-------CTATTT-TGTAGACATA----CTC-AG-A-AA-G-G-TATT---TGAAAACG-TTTTTTTGAACTTTGCC-ATTGAGT--TAAC--TTGGCTTTTG-CAA---ATTCTTAAAAAATATATTT----T----G----AAA------A------T---G---TTTT-------AAAATTTG---TTT-----TT---AA--AATAT-CA--TTT--TTA-ACC--GAAATG---TG-----TCCT-GTATTAGAAT---AAGGAGT-AAT-CAT---TTGAT--TATATG--GTCAATAAA-----------TGTGTAAAA--TTTGAAAATAATCTG--AAGTT-G-GA--------TGTATGA-TA------ATT---A--GCA--T-TTT------AA--A-----------ACG-GTAT---------A------TT---TT------T-----TCAGACAAT--------GG--------CC-CAGC---TCAAC-TG-G-TGTTGTGAAAA---TC-TTTTTTACAAATTAATTT-T--TTTTTAA-AGAAC-ATGGTTAAATCTAAAATTGAT----A--AATAAAAACTTTTG----AAGAGAAAAAC------AAAATTTTGT-----AAAAATAT---AAA---TTTTATGGCAA-A-------AA----A----A-----GTT---TT--T-A-A-ATATGTG-T----T--TAT--TTT-----------TTAT--T-T--T------GT--------------T----AATT-----------CA--ATA----TATA--TTTG--GG-------GTTTA-A-TATTGTTTTTTAAT-A-TAT--TGCC----CATA--TTTGT-TAAAGCAT-T-GTT-TTTG-CAT--AAA--GTACCAGA---AAA---GC---TCCAAAC-TTGGT-TTTAAAAA--A---TAAACA----TATACCATGGGAAGT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAAATAACCAAACCTTTGCTTGCTAT
gi|6 : CATACACATATACTACACCAGTACAATCCACAAACTAAGT-TA-GGATC-----ATGTCTAA-TACTAC-----TGAA--C-------T-------A----------ATATTCAAA-------CTGTTC-TGTGGATAAG----CCT-AG-TTAA-G-G-TAAT---TGAAAACA-GTTTTCTGAA-TCTGC---TT-AGT--TAAC--TAAGCATAAGATAA---A-TCTTTACAAATACTTTT----T----G----TAA------A---------------TTT-------AAAATTTG-----------TT---AA--AA-AG-CATTTTT--TTA-CCC--AAAA
gi|2 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataAATATA-A-TACTCCA--AAAAT----AAATTAAGGACC-ATACT-----CTATGTACATTCTACAAGAATGAA--A-------TTCAATTCA----------A-------A-------CTGTTC-TACGGACAAA----ACT-AG-A-AAAG-G-TAAT---TGAATACG-GTTTTCTGAACCTT--C-A---A-----AAC--TTAGCTTTAG-CAA---ATTGTT-TAAAACAAGTTT----T----GAGAAAAA------A------TGA-G---TTTT-------GAAA--TGAAATCTAACAATTGAAAA--AAAAG-CA--TTT--TTA-AT------------TT-----TCTT-CTATT----------GGAGT-AAT-AAC---TTGAC--TAT-TT--GT--ATAAC-----------T-TGAAAAA------AAATTAATATA--A-------CA--------TGTAAGACTG------AGA---G--GC---T-ATT------AA--A-----------ACA-GCATTCCA-----G------TT---TT------T-----TTGCACAAaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|10 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccATATA-A-TCCAT----AAAAT----ATGTTAAGG------ACCGTTTTCTTTATTAACTGAAC-----CGAAATC-------C-------A----------A-------A-------ATGTTC-TCTGGGCA-A----GTCTAG-A-AA-ATG-TAAT---TGAAAATGGTTTTCTTGA-CCTTG----TTAGGT--TGAC--TTAACTTTAG-AGA---ATTCTTTACAATTTTATTA----T----G----AAAGAAGAAA------TAAAG--------------AAAA--------------------AA--AAAGG-CA--TTT--TTT-ACCCGAAAATAAAATT-----TCTT-GTATTGGATT---AATAAGTTAAT-TATAATTT--T--TAT-TGAAGTCAATAAA-----------TATGCAAAA--TTTGAAAATAATCTG--AGGTA-A-GA--------TGTAAGA-TT------AAG---A--G-A--T-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TT---TT------T--------GATAATC-------GGAAGAAACTCCGCCGT---TCAACATA-A-TACTGTGTAAACATTG-TTTTTTAC-AATTTATTA-TAATGTTAAA-AGAAC-ACGGTGAAATCT-TCATTTATAACGA--AATAAGAACTTTTA----AAGAAAAATTC---------ATTTTG------ACATATAT---ACA---TTTTAGGGCAA-A-------AA----C----T-----GTTATATT--C-ATA-ATATAC--T----TAATATTGTTT-----------TTAaacttcataaaagttattatgtcggagattttgaaaaatcggaggatggtccatttcaactaagtgttgtgaaaagagtttttacaagtaagtttgaggttaatagacctttgtaaagtcttaaaatgatacaaatgaaaactacaaaattttgaaaatacaaattttagggcaaaaactatttttaaaatatgcgtttgttttttaatgtaaatttaaaaaaaatacagtatatatttgggccagttttgcttttaaacatagtgcccatatgtgtgatagcattcttttataataaaaaatataagagcagctctaaactgtttttgaaactatacatacaagcgtatattattctaggatt
gi|1 : t-ACTCC--TA--AAAAT----AAATTAAGG-TT-GTGCC-----CTATATAAATTTTAC-----TGAA--C-------T-------AGAATTTG---A-------A-------CAGCTC-TATGGACAAG----CAT-AGTA-AA-G-A-TAAA---TGACTATG-GTTTTCTGAAC-------AAAG-GT--TAAC--TTAGCTTTTG-CAA---ATTCTTTTCAAATA-ATTT----TTGAAG----AAA------AAACAG-T---GAA-TTTT-------AAAATTTG---TT-----------AA--AGAATGCA--TTT--TCA-AGC--TAAATA---TAGTATTTCTT-GTTTT----------GGAGT-AAC-AAA---TTAAT--TATATA--GTAAATAAA-----------TATGCTAGA--TTAGAAAATAATCTG--A---T-GAGA--------TA---AA-AA------ATTAAGA--GGA--T-TTT------AACTA-----------GC--ATATCCA------A------TT---TT------T-----TCAcccataactgtaatgacattcatttggcataaagtatcagtgcactcacaaacgtgttcttaaaaac
gi|18 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacAAT----AAAATAAG------TGCC-----CTATATAAATTATGC-----TGAA--C-------C-------A----------A-------AATTCAATCCGTTC-TGTAAAGAAA----CCT-AG-A-AA-ATG-TAAT---TGAAAACG-GTTTTcgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|12 : tatgtaaagacgaacttcacatgtatgtcgaatatattatgtatacacT----AAGTTGAGG-AACATACC-----ACATATAAATTCTAC-----TGGA--C-------T-------AAAATTCT---A-------A-------CTGTTC-TGTAAACATA----CCC-AGAA-AA-G-G-TAAT---TGAAAACG--GTTTTAGAACCTTGCC-A---AGT--AAAC--TTAGCTGAAG-CGA---ATTGTTTAAAAA---ATTT---------------AA------A------T---T---TTAT-------AAAA--------------------AA--AA-AT-AG--TTT---------------------------TCTT-GTATT----------GGGGT-AAT-AA-------AT--TATATG--GTCAATAAA-----------AGTGC-ACA--TTTTAAAATAATATGGTGTGTT-A-AA--------TGTAAGA-T--------TT---AAGGAA--T-TTT------AA--A-----------ATA-ATAT---------ACCAGATTT---TT------T-----TCAAACCAT--------
gi|5 : TACC-----CTTTATAAATTTCGC-----TGAA--C-------TCAAAATCA----------A-------A-------CTGTTC-TTTGGACA-A----CCCTAGAA-AA-G-G-TAAT---TGAAAATG-GTTTT---AGCATTGC---TTAAGA--TAAC--TTCGCTT----AGA---GTTATGTACAAATATTTTT----T----AAAACAAA------A------T---GAA-TTTT-------AAAATTTG-----------CT---AA--AACAG-TA--TTT--TAA-ACC--GAAAAA---TAGTTT-TCTT-ATATTGGAGT-------AGT-AA---AT---TCG-T--CAT-T---GTCAATTAA-----------TATGTAATATTTTTGAAGATAA------ATGTT-G-GA--------TTTAAGA-TA------tttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|8 : tatgcagagacaatatttttaaatttatatatatttttatatactattaaaatgttataatatggTGTATATTCTAC-----TGAA--C-------T-------AAAATACATTTA-------A-------CTATTG-TGTGG---TC----CCT-AGAA-AA-G-A-TAAT---TGAAAATG--------GAACCTTGCTAATTAAGT--TAA---TCA--TTATT-CAAATTATTCTT-ACAAATAT-TTT----T----G----AGA------AAAAAATT---GAATTTTT-------AAAATTTG---TTT-----GA---AA--AAAAT-Ctagaggtcgagctatgaaaagctgtatacgttttattagtgtttagttaagtgttgaaaaaaaaacacatggttaaatattaaattgatgaataaggaattttaaataaaaataccaaattttcccccaaaaaaacattaggaatgttaaaaaaactgttacttttaaatgtgcatttagttttgataatattattaaaatgtaagttttcaggttactattgcttttgaatatattgtccatacctgtattagcatttttttggcatatagtatcagcatagctccaatcttgtttttaaaaactatgcacactagtatactatttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|7 : tacactactcaaaatttgataagaatcatgccatgattgTATATATTCTAC-----TGGA--CAAAAATTC-------A----------A-------A-------CTGTTC-TGTGGACAAA----CTCTAA-A-AA-G-G-AATT----GGAAGTG-ATTTTCTGAACTTTGC----TAAGTTATAAC--TTGGCTTAAG-AGA---ATTCTTAACAAATATTTTT----TTAACA----AAAAC----A------T---GAA-TTTC-------AAAATTTG-----------TT---AA--AA-----A--TAC--TTACCCC--AAAATA----G-----TTTT-CTAATATATT-----TGTGT-AAT-AAA---CTGATTGTATACA--GCCGATAAAAGATATTTTATTATGTAAGA--TTTGAAAATAAtgatgttagatgtaagatttagcggatatttacagcatacctgattttttaacaccaaaaatgtatacattttattttggggatttttgaaacttggagaatgttccagcaattcaccagggtgttgggaaaacagtttgatagtgaaagaacaaggcttaattttaaatggattaataagaacttttcaagaaagctacaaaattttgaggcaaaaattgtagttttttaattatgcgttcgtttttaataatgtaaattaaaaatatattttttaggtttaagtattgtttttgaatatattgctcatacttgtatcagcattcttttgacataaagtactggagcagatccaaactcatttttaaaaactattcattttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattctatatatactcaaaataaaagcaaaggaccaaaaATAAATTCTAC-----TGG---C-------C-------A----------A-------A-------CTGTTC-GGTGGACAAA----CTC-AT-A-AA------ATTGAACGAAAACG-ATTGTTTGAACCTTGCT--TTGA-----AAT--CTAA-TTTTA--AA---ATTTGT-AAAAATATATTTAATCC----G----GAA------A------TA--G---TTTT-----------CTTG---TAT-----TG---GAGTAATAT--A--TTTA-TTA-ataatgggaccagcagttcagttcagcagtttttacaatacagtttgatgttgaagaaccatggttaaaccttaaatatataaataagaatttatgtcttaagaaaaacttttttttttataaaaacaataattttgaggcaaaaactcttattttttatgtatgcgtttatctttaataatgtaaattaaaaataaagttttagggttaataatgtttttgaatagtgtagctatcagttttgggaaagtaaaagtgcagctccaaacttgttcttaaaaact
gi|13 : ----------A-------A-------ATACTTATATATATATAAATCCTT-GG-A-AA-G-GGTAAA---TGAAAACG-GGATTTTGAACATGGC----TGGAT--CAACATTTTTCTTTAG-AGA---ATTCTTTACAAATATTCTT----T-------------------------T---T---TTTTTTTTAAAAAAAATTA---ATT-----TT---AA--AAT-T-AA--TTTTCTTG-AAA--AAAATACT-TT-----TTTT-GTATT----------GGATT-AAT-AAA---TTGTT--TATATA--GTCAAGAAA-----------TATGCAAAA--TATAAAAATGAC------ATTT------------------------------TT-----------T-TTT------AA--A-----------A-----AA---------A------T-------------------CAGAGGAT--------GA--------TC-CAGT---TCAAC-AGTG-TGTTATGAAA-------------ACAGTGTAG-------TGCTGAA-AGAGC-ATGTTTAATCTTGAAATTGCT----A--AATA--------TG----A----AAAAAC--------ACTTTTCG-----AAAAATAT---AAA---TTTTGGAGCAtatggtcagtaaatatacaaaaaatgaatataagctgatgttagatgtaagactgcattatatgtgaaaacagcatatttcacaccaaattgtatagtttacggtttattttgaaattttttgaaaatcgaagtgtggttcaatttaattggtgttgtaaaaacaatttttacaatttaatttaatgttgaaagaccataattatatcttaaattgaaataataaattttaaagaaaaatacatttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
gi|9 : TT----T----G----AAA-------------TCTAA---TTTT-------AAAATTTG---TA-----------AA--AATAT--A--TTT----A-ATCCGGAAATAGT-TT-----TCTT-GTATT----------GGAGT-AATATAT---TT-AT--TATATG--GTCAGTAAA-----------TATACAAAA--AATGAATATAAGCTG--ATGTT-A-GATGTAAGACTGCATTA-TATGTGAAAAC---A--GCA--TATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TT---TTGAAATTT-----TTTGAAAATCGAAGTGTGG--------TT-CAAT---TTAAT-TG-G-TGTTGTAAAAA---CA-ATTTTTACAATTTAATTTAA--TGTTGAA-AGACC-ATAATTATATCTTAAATTG------A--AATAATAAATTTTA----AAGAAAAATAC------A----TTTGC--------GATTT---CAA---TT-----ACA----------------------------TT---GT--T-A-A-ATATATT-TATACT--TAT--TTT-----------TT-T--T-T--TGGGGGGGTGGGGGGGGGGGGGGT----AA--------------A--ACAT---TATA--TT-----G-------TTTTAGA-TA-TGTTTT----------------C----AATA--CTTGT----GGCAG-T-CAT-TTTG-CAT--AAA--GAATCAGA---GCAGGTGC---TTCGAAC-TTGTT-TTTAAAAA--A---TATA-A----T---CTATGGGAAAT---
gi|14 : ataaattctactggccaaactgttcggtggacaaactcataaaattgaacgaaaacgattgtttgaaccttgc----G----AAA---------------------TTTT-------AGAATTTG---TTA----------AA--AACGC-C---TTT--TTA-TCTTAAAAAAG---TT-----TTCTTGTATTTGACTTTTAAAAAG---AT-TAT-----------ATATG--GTCAATAAA-----------TATGCAAAA--TTTGAAAATAATCTG--ATGTTAG-GA--------TTTA-GA-TA------ATT---gaatgacatggctcttattt
gi|16 : GGAGT-AAT-AAA---TTGAT--TATACT--GTCAATAAA-----------TATGCAAAA--TTTGAAAACAATCT-----------GA--------TATAAGA-T--------TT---A--GGAATT-TTT------AA--A-----------ACA-GTTT---------A------TTCGATT------T-----TGTCACA---------------------C-CAG------AA-------TGT-------A---TC-TATTTTA---------------TGTTCAA-AGAAC-ATGATTCAATCTTAAATTGTT----G--AATAAGAAtaaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|8 : tt---------A------TT---TT------TGAAACTTGGAGAAT--------GT--------TC-CAGCAATTCACCAGG-G-TGTTGGGAAAA----C-AGTTTGATAG---------------TGAA-AGAAC-AAGGCTTAATTTTAAATGGAT----T--AATAAGAACTTTTC----AAGA---AAGC---------------T-----ACAAA--------A---TTTTGAGGCAA-A-------AATTGTA----G-----TTT---TT--T-A-A-TTATGCG-T----T--CGT--TTT-----------TAAT--A-A--T------GT--------------A----AATT-----------AA--AAA----TATA--TTTTTTAG-------GTTTA-AGTATTGTTTTTGAAT-A-TAT--TGCT----CATA--CTTGT-ATCAGCAT-T-CTT-TTGA-CAT--AAA--GTACTGGA---GCA---GA---TCCAAAC-TCATT-TTTAAAAA--C---TAtatcaaag
gi|2 : tacactactcaaaatttgataagaatcatgccatgattgtgtatattctactgaactaaaatacatttaactattgtgtggtccctagaaaagataattgaaaatggaaccttgctaattaagttaatcattattcaaattattcttacaaatatttttgagaaaaaaattgaatttttaaaatttgtttgaaaaaaatctgatgttagatgtaagatttagcggatatttacagcatacctgattttttaacaccaaaaatgtatacattttattttgggg-----TCGGAGGAT--------GG--------TC-CATT---TCAAC-TAAG-TGTTGTGAAAA---GA-GTTTTTACAAGTAAGTTT-G--AGGTTAATAGACC-TTTGTAAAGTCTTAAAATGAT----ACAAATGAAAACT-----------------AC------AAAATTTTG-------AAAATAC---AAA---TTTTAGGGCAA-A-------AA----C----T-----ATT---TT--TAA-A-ATATGCG-T----T--TGT--TTT-----------TTA-----A--T------GT--------------A----AATTTAAAAAAAATACA--GTA----TATA--TTTG--GG---------CCA-G-TTTTGCTTTTAAAC-A-TAG--TGCC----CATA--TGTGT-GATAGCAT-T-CTT-TTAT-AATAAAAA--ATATAAGA---GCA---GC---TCTAAAC-T--GT-TTTTGAAA--C---TATACA----TACAttcattttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|11 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaatataatactccaaaaataaattaaggaccatactctatgtacattctacaagaatgaaattcaattcaaactgttctacggacaaaactagaaaaggtaattgaatacggttttctgaaccttcaaaacttagctttagcaaattgtttaaaacaagttttgagaaaaaatgagttttgaaatgaaatctaacaattgaaaaaaaagcatttttaattttcttctattggagtaataacttgactatttgtataacttgaaaaaaaattaatataacatgtaagactgagaggctattaaaacagcattccagtttttttgcacaaaacttcataaaagttattatgtcggagattttgaaaaaAGT---TCAAC-TG-GATGTTGTGAAA----TCAGTTTTTACAAAT-AAGTT-TGGTGTTGAA-AGAAT-ATTGTTAAATCTTAAATTAAT----A--AATAAGAACTTTAA----AAGAAAAATAC------AAAAAATTG------AAAAATAT---ATATTTTTTTATTTTAGTA-------CA----T----ACTGTTGTT---TT--T-A-ATACATATG-T----T--TAT--TTT-----------GTAT--A-A--T------GT--------------A----AATT-----------AT--ATA----TATA--TTTA--TATGTTTTTGTTTA-A-TATTGTTTTTGAAT-A-TAT--ATCA----CATA--CTTTT-TATAGCAT-T--TT-GTTGTCAT--CAA--GTACCAGA---ACA---GCTGTTCCAAAagcgtatattattctaggatt
gi|7 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagatttttgaaaataagTTTTTACAATACAGTTT-G--ATGTTGA-AGAACCATGGTTAAACCTTAAATATAT----A--AATAAGAATTTATGTCTTA--AGAAAAACTTTTTT----TTTTAT-----AAAAACAA---TAA---TTTTGAGGCAA-A-------AA----CTCTTA-----TTT---TT--T-A-T-GTATGCG-T----T--TAT--CTT-----------TAAT--A-A--T------GT--------------A----AATT-----------AA--AAA----TAAAGTTTTA--GG-------G-TTA-A-TAATGTTTTTGAAT-AGTGT--AGC-------TA--T----------CA----GTT-TTGG---G--AAA--GTAAAAGT---GCA---GC---TCCAAAC-TTGTT-CTTAAAAA--actacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|5 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattctatatatactcaaaataaaagcaaaggaccaaaatatatattctactggacaaaaattcaaactgttctgtggacaaactctaaaaaggaattggaagtgattttctgaactttgctaagttataacttggcttaagagaattcttaacaaatatttttttaacaaaaacatgaatttcaaaatttgttaaaaatacttaccccaaaatagttttctaatatatttgtgtaataaactgattgtatacagccgataaaagatattttattatgtaagatttgaaaataaataatgggaccagcagttcagttcagcagAA-AACAC-ATGGTTAAATATTAAATTGAT----G--AATAAGGAATTTTA----AATAAAAATAC------CAAATTTTCCCCCAAAAAAACATTAGGAA---TGTTA-----A-A-------AA----A----ACT---GTTACTTT--T-A-A-ATGTGCA-T----T--TAG--TTT-----------TGATAATAT--T------AT--------------T----AA--------------A--ATG----TAAG--TTTT--CA-------GGTTA-C-TATTGCTTTTGAAT-A-TAT--TGTC----CATA--CCTGT-ATTAGCAT-T-TTT-TTGG-CAT--ATA--GTATCAGC---ATA---GC---TCCAATC-TTGTT-TTTAAAAACTA---TGCACACTAGTATACTATct
gi|6 : tatgcagagacaatatttttaaatttatatatatttttatatactattaaaatgttataatatggtaccctttataaatttcgctgaactcaaaatcaaactgttctttggacaaccctagaaaaggtaattgaaaatggttttagcattgcttaagataacttcgcttagagttatgtacaaatattttttaaaacaaaatgaattttaaaatttgctaaaacagtattttaaaccgaaaaatagttttcttatattggagtagtaaattcgtcattgtcaattaatatgtaatatttttgaagataaatgttggatttaagatatagaggtcgagctatgaaaagctgtatacgttttattagtgtttagttaagtgttgaaaaaTAAATTTTAAATTGAT----G--AATAGGATTTTTTA----AATAAAAAAAC------ACAAATTTGT-----AAAA-TAA---AAA---TTTTGGGGCAA-A-------AG----CTGTTA-----TTT---CT--T-G-A-ATATGCC-T----T--TAT--TCT-----------TAAT--A-----------AT--------------T----AGTT-----------TA--AAACCCTTATT--TCTT--GA-------ATT-G-A-TATTATTTTTCAAT-A-TAT--TACT----TATC--CTTGC-TTAAGCAT-T-ATT-TTTGGCAT--AAC--GTATCAGA---GCA---GT---TC-AAAG-TTTGT-TTTAAAAA--AACGTACATATTTTTATACGATTATATGT---AACACCGTGGGGttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|20 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacAC------AAAATTTTG------AAAAACAT---AAA---TTTTAGGGCAA-ATTCTGTTA-----------------TT---TT--TAA-A-AAATGCG-T----T--TAT--TTT-----------TAAT--aataaattcttgattaattttgtggagtataatatata
gi|3 : AATGC---AAA---TCTTA-----A-A-------AA----A----A-----GAT---TTACC-A-A-TTATATGAT----T--TGT--TTTGTGCTCCTAGTCTAT--T-TGCT------GT--------------TTAACAGCT-----------CATAATG----CACA--TTTT--TG-------TTTT----TATTTTATTTTATT-T-TAT--TTCAAAGATATA--TTTAT-ATAATCAA---GTT-T-----AT--AATTTGTCTCAGCTTTCAA---GC---TT---AC-TTGCTGTTTAACAG--C---T---CA----TATTCCAC---ATGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAaatgtataaattt
gi|19 : TTA-A-TATTGTTTTTTAAT-A-TAT--TGCC----TATA--ATTGTATAAGGTTTCT-GTTACTTT-C-T--AAA--GTATCAGA---GCA---GC---TCCAAAC-ttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|15 : taacgtaaagaaaaatataaggTTTTTAAT-A-TATATTGCC----CATG--GTTGT-AATAGCAT-TCATT-TTT----C--GGA--GTA----------A---GC---TCCAAAC-CTGTT-TTTAAATC--C---TAAAC------ATACCAT
gi|17 : atttttaataaagcaaattttgaggaatgtatttttttaggttgaggaTTTTGATTA-TAT--TGCC----CATACTTTTAT-T--AGCAT-T-CTC-TTGG-CAT--AAA--GTATCAG-----CA---GT---TCCAAACATT--T-TATAAGAA--A---tttaatgtaacatctaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 1111 333333333333 7777777777777777777777777777777777777777777777 111 4444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 111111111111111 11111111111 1111111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111 11111111111 222222222 1111111111111 333333 111 111 1111 2222222222222222222222 33333333333333333333333333333333333333333 111 1111 111 3333333 111 1 1 333333333
lowQualScore : 1 222222222222 0000 5 888888888888 44 88888 44 9999999999999999999999999999999999999999999999 3 44 6 3 111 6 3 2 3 2222222222 44 1 44 2 2 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 4 33 333333333333333 0 3 55555555555 3 3 0 3 3 4 0000000 44 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 3 999999999999 2 3 2 777777777 5 0 55555555555 2 5 111111111 7777777777777 0 3 666666 666 000 3 3 3 5555 5 22 1111111111111111111111 999999 1 55555555555555555555555555555555555555555 44 444 3 2 3 3 66666 1 333 77777 9999 111 44 0 1 0 555 6 6666 2 3 3 555 999 8888 111 4444444 444 0 1 4 4 5 3 3 666666666
lowQualScore : . ............ .... . ............ .. ..... .. .............................................. . .. . . ... . . . . .......... .. . .. . . . ............................................................................................................................................. .. . .. ............... . . ........... . . . . . . ....... .. ................................................................................................................................................................................................................................... . . ............ . . . ......... . . ........... . . ......... ............. . . ...... ... ... . . . .... . .. ...................... ...... . ......................................... .. ... . . . . ..... . ... ..... .... ... .. . . . ... . .... . . . ... ... .... ... ....... ... . . . . . . . .........
lowQualScore : 0 000000000000 6666 0 999999999999 55 33333 66 0000000000000000000000000000000000000000000000 1 22 2 1 555 2 1 3 1 8888888888 66 0 11 5 5 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 0 88 444444444444444 4 3 88888888888 3 3 5 3 3 5 8888888 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 6 111111111111 0 3 9 222222222 2 3 88888888888 3 2 555555555 5555555555555 9 3 555555 444 000 6 6 6 5555 8 00 3333333333333333333333 333333 0 55555555555555555555555555555555555555555 66 222 3 1 1 1 77777 4 000 77777 4444 333 22 2 5 5 444 2 5555 5 3 3 666 444 9999 777 9999999 000 6 0 0 0 0 0 0 555555555
consensus : CATANATATA-ACTCCACCA--AAAAT----AAA-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CT--AG-A-AA-G-G-TAATTGAAAA-CGGTTTTCTGAACCTTGC--TTGAGT--TAAC--TTAGCTTNAGCGAATTCTTTACAAATATTTTTT----G----A-AA------A--------T---G--TT---T-T--------AAAATT---TGT-----TT---AAAA--AAT-C--ATTTT--TA-ACC--AAAATAG----T-----TTCT--TGTATT--------T--GGA-GTAATAANTTGAT--TATA--------T---G--GTCAATAA-A-----------TAT-G-CAAA-ATTTGAAA-ATAATCT-------G--ATGTT----------AGA-TGTA--AGA-T-----ATTA--GN-A--T-TTT------AA--A-----------ACG-GT--AT---------A------T-TT---T------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-TG-TTGTG-AAA-ACC--------GT-----T--TTT-ACAANT---TAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAACTTTTAAA-----------GAAAAATACAAAATTTT------G-AAAAATAT---A-A-------ATTTTAGGGCA-AAAAC----NGTT---TTT---A-A-AT-ATGCGT----TTATTTTTAATAAT------G--T-----------AAATTN-----AANA---------TATA--T-------T---------TT---T--GGT--TTA-A-TA-TTGTTTTTGA-ATA-TATTGCC----CATACTTGTANNAG-----CATT-C--TTTTGGCAT--AAAGTATCAGAGCA---GCTC-CAA----ACTTGTT-TTTAA-AAA--CTA--CACA----TATAC---CA---T--AATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATANATATA-ACTNCACCA--AAAAT----AAA-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CC--AG-A-AA-G-G-TAATTGAAAA-CGGTTTTCTGAACCTTGC-ATTGAGT--TAAC--TTAGCTTNAGCGAATTCTTTACAAATATNTTTT----G----A-AA------A--------T---G--TT---T-T--------AAAATT---TGT-----TT---AAAA--NAT-C--ATTTT--TA-ACC--AAAATA-----T-----TTCT--TGTATT----A---T--GGA-GTAATAANTTGAT--TATA--------T---G--GTCAATAA-A-----------TAT-G-CAAA-ATTTGAAA-ATAATCT-------G--ATGTT----------GGA-TGTA--AGA-T----AATTA--GN-A--T-TTT------AA--A-----------ACG-GT--AT---------A------T-TT---T------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-TG-TTGTG-AAA-ATC--------GT-----T--TTT-ACAANT---TAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAACTTTTAAA-----------GAAAAANACAAAATTTT------G-AAAAATAT---A-A-------ATTTTAGGGCA-AAAAC----AGTT---TTT---A-A-AT-ATGCGT----TTATTTTTNATNNT------G--T-----------NAATTN-----AANA---------TATA--T-------T---------TT---N--GGT--TTA-A-TA-TTGTTTTTNA-ATA-TATTGCC----CATACTTGTNNNAG-----CATT-N--TTTTNGCAT--AAAGTATCAGAGCA---GCTC-CAA----ACTTGTT-TTTAA-AAA--NTA--CACA----TATAC---CA---T--GATGT---AGCACCGTGNGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCA
gi|1 : CTA--AAAAT----AAA-TTAAG---GTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-AT--AGTA-AA-G-A-TAAATGACTA-TGGTTTTCTGAAC------AAAG-GT--TAAC--TTAGCTTTTGCAAATTCTTTTCAAATAATTTTT----G----A-AG------AAAAAACAGT---GAATT---T-T--------AAAATT---TGT-----T----AAAG--AATGC--ATTTT--CA-AGC--TAAATA-----TAGTATTTCT--TGT-TT--------T--GGA-GTAACAAATTAAT--TATA--------T---A--GTAAATAA-A-----------TAT-G-CTAG-ATTAGAAA-ATAATCT-------G--ATG------------AGA-TAAA--AAA-T----TAAGA--GG-A--T-TTT------AACTA-----------GC--AT--ATCCA------A------T-TT---T------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactc-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-TA-TTATG-AAA-A-C--------GT-----T--TTTTACAATT---AAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAATTTTTAAA-----------GAATAACA-AAAATTTT--------AAAAATAC---A-T-------ATTTTTGGGTT-AAAACTCTTGTTT---TTT---A-A-AT-ATGCAC----TCATTT----TGAT------A--T-----------AAA-TA-----AACA---------TCTA--T-------TGGAAATAAGTTACAT--GATTCTCA-A-TGTTTTTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaATATA-A-TCCAT----AAAAT----ATG-TTAAG---GACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CT--AG-A-AA-ATG-TAATTGAAAA-TGGTTTTCTTGACCTTG---TTAGGT--TGAC--TTAACTTTAGAGAATTCTTTACAATTTTATTAT----G----A-AAGAAGAAA--------TAAAG------------------AAAA------------------AAAA--AGG-C--ATTTT--TT-ACCCGAAAATAAAA--T-----TTCT--TGTATT-----------GGA-TTAATAAGTTAAT--TATAATTTTTATT---GAAGTCAATAA-A-----------TAT-G-CAAA-ATTTGAAA-ATAATCT-------G--AGGTA----------AGA-TGTA--AGA-T----TA--A--GAGA--T-AT--------A--T-----------ATGCGT--ATCGTCTGTCGA------T-TT---T------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-TA-CTGTGTAAACATT--------GT-----T--TTTTACAATT---TATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAACTTTTAAA-----------GAAAAATTCA---TTTT------G-ACATATAT---A-C-------ATTTTAGGGCA-AAAAC----TGTTATATTC---ATA-AT-ATACTTAATATTGTTTTTaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tCC----CATAACTGTAATGA-----CATT-C--ATTTGGCAT--AAAGTATCAGTGCA----CTCACAA----ACGTGTT-CTTAA-AAA--acccataactgtaatgacattcatttggcataaagtatcagtgcactcacaaacgtgttcttaaaaac
gi|11 : tatataatccataaaatatgttaaggaccgttttctttattaactgaaccgaaatccaaaatgttctctgggcaagtctagaaaatgtaattgaaaatggttttcttgaccttgttaggttgacttaactttagagaattctttacaattttattatgaaagaagaaataaagaaaaaaaaaggcattttttacccgaaaataaaatttcttgtattggattaataagttaattataatttttattgaagtcaataaatatgcaaaatttgaaaataatctgaggtaagatgtaagattaagagatatatatgcgtatcgtctgtcgatttttgataatcggaagaaactccgccgttcaacataatactgtgtaaacattgttttttacaatttattataatgttaaaagaacacggtgaaatcttcatttataacgaaataagaacttttaaagaaaaattcattttgacatatatacattttagggcaaaaactgttatattcataatatacttaatattgtttttaTA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CC--AG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC---TAAGT--TCAA--TTAGATTAAGCGAATTCTTTAACAATATTTTTT----T----T-TT------A--------T---G--TTAGATGT--------AAGATT---TGT-----GC---ATACCTGAT-T--TTTTT--CACACC--AAAATG-----T-----c
gi|11 : aggatcataatt---------A------T-TT---T------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GATG-TTGTG-AAA--TCA-------GT-----T--TTT-ACAAAT---AAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAACTTTAAAA-----------GAAAAATACAAAAAATT------G-AAAAATAT---ATATTTTTTTATTTTAGTACATACTGT----TGTT---TTT---A-ATAC-ATATGT----TTATTTTGTATAAT------G--T-----------AAATTA-----TATA---------TATA--TTTATATGT---------TT---T--TGT--TTA-A-TA-TTGTTTTTGA-ATA-TATATCA----CATACTTTTTATAG-----CATT-T--TGTTGTCAT--CAAGTACCAGAACA---GC-------------TGTT-CC--A-AAA--CTA--CACA----Tagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagT----AAG-TTGAG---G---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CC--AGAA-AA-G-G-TAATTGAAAA-CGGTTTTA-GAACCTTGC---CAAGT--AAAC--TTAGCTGAAGCGAATTGTTTAAAAA-ATTT------------A-AA----------------------TT---T-T--------A-----------------T---AAAA--A---------------------AAAATAGT---T-----TTCT--TGTAT---------T--GGG-GTAATAA----AT--TATA--------T---G--GTCAATAA-A-----------AGT-G-C-AC-ATTTTAAA-ATAATAT-------GGTGTGTT----------AAA-TGTA--AGA-T------TTAAGGA-A--T-TTT------AA--A-----------ATA-AT--AT---------ACCAGATT-TT---T------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|13 : ATAAAT-CCTTGG-A-AA-G-GGTAAATGAAAA-CGGGATTTTGAACATGGC---TGGAT--CAACATTTTTCTTTAGAGAATTCTTTACAAATATTCTTT----------------------------T---T--TT---T-TTTTTAAAAAAAATT---AAT-----TT---TAAA--ATT-A--ATTTTCTTG-AAA--AAAATACT---T-----TTTT--TGTATT-----------GGA-TTAATAAATTGTT--TATA--------T---A--GTCAAGAA-A-----------TAT-G-CAAA-ATATAAAA-A-----T-------G--ACATT--------------T----------------TT---------T-TTT------AA--A-----------A-------AA---------A--------------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-TG-TTATG-AAA--------------------------ACAGTG---TAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA---------------------AAAAACAC----TTTTC-----G-AAAAATAT---A-A-------ATTTTGGAGCA-aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatat----G----A-AA----------------------TT---T-T--------AGAATT---TGT-----TA---AAAA--CGC-C---TTTT--TA-TCTT-AAAAAAGT---T-----TTCT--TGTATT--------T---GA-CTTTTAAAAAGATTATATA--------T---G--GTCAATAA-A-----------TAT-G-CAAA-ATTTGAAA-ATAATCT-------G--ATGTTA---------GGA-TTT---AGA-T----AATT
gi|14 : ---------A------T-TT---T------TAAAAATCGGAAAAC--------G-GTCT-----A--A---TTCAACAG-----G-G-TA-TTTTG-AAA-ACA--------GT-----T--TTT-Ataaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|15 : gaaattttagaatttgttaaaaacgcctttttatcttaaaaaagttttcttgtatttgacttttaaaaagattatatatggtcaataaatatgcaaaatttgaaaataatctgatgttaggatttagataatttaaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaATTTTTAATAAA------G--C-----------AAATTTTGAGGAATG---------TATT--T-------T---------TT---TA-GGT--TGA-G-GA-TT---TTTAATATA-TATTGCC----CATGGTTGTAATAG-----CATT-CATTTTTCG------GAGTA-------A---GCTC-CAA----ACCTGTT-TTTAA-ATC--CTA--AAC------ATAC---CATTTT--AATGT---AACATCt
gi|16 : ---T--GGA-GTAATAAATTGAT--TATA--------C---T--GTCAATAA-A-----------TAT-G-CAAA-ATTTGAAA-ACAATCT-------G--ATAT------------------A--AGA-T------TTA--GG-AATT-TTT------AA--A-----------ACA-GTTTATTCG------A------T-TT---T------G-----TC--ACA--------------CC-----A--G------AA----------------TGT------ATC--------TA-----T--TTT-A------------------TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-TATCAAA-----------Gtaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|17 : tTTTTGA-TTA-TATTGCC----CATACTTTTATTAG-----CATT-C--TCTTGGCAT--AAAGTATC--AGCA---GTTC-CAA----ACAT-TT-TATAAGAAA--CTG--TAGA----GATACGATCA---T--AATGT---AACATC
gi|18 : tttaAAT----AAA-ATAAG-----------TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CT--AG-A-AA-ATG-TAATTGAAAA-CGGTTTTttataggaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatattatgtatacac-----AAAA---------TATA-------------------------A--GGT--T-A-A-TA-TTGTTTTTTA-ATA-TATTGCC----TATAATTGTATAAGGTTTCTGTT-A--CTTTC---T--AAAGTATCAGAGCA---GCTC-CAA----AC
gi|2 : taacgtaaagaATATA-A-TACTCCA--AAAAT----AAA-TTAAG---G---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CT--AG-A-AAAG-G-TAATTGAATA-CGGTTTTCTGAACCTT-C-A---A-----AAC--TTAGCTTTAGCAAATTGTTTA-AAACAAGTTTT----GAGAAA-AA------A--------TGA-G--TT---T-T--------GAAATGAAATCTAACAATTGAAAAAA--AAG-C--ATTTT--TA-AT--------------T-----TTCT--TCTAT---------T--GGA-GTAATAACTTGAC--TATT--------T---G-----------------------TAT------A-ACTTGAAA-AAAAATT-------A--ATATA----------ACA-TGTA--AGACT----GA-GA--GG-C--T-ATT------AA--A-----------ACA-GC--ATTCCA-----G------T-TT---T------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-AGATTTTGAAAA-ATCGGAGGATGGT-----CCATTT--CAACT---AAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAGTCTTAAAATGATACAAATGAAAACTACAAAATTTT------G--AAAATAC---A-A-------ATTTTAGGGCA-AAAAC----TATT---TTTA--A-A-AT-ATGCGT----TTGTTTTT--TAAT------G--T-----------AAATTT-----AAAAAAAATACAGTATA--T-------A---------TT---T--GGG--CCA-G-TT-TTGCTTTTAA-ACA-TAGTGCC----CATATGTGTGATAG-----CATT-C--TTTTATAATAAAAAATATAAGAGCA---GCTC-TAA----AC-TGTT-TTT-G-AAA--CTA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAAAATTTT------G-AAAAACAT---A-A-------ATTTTAGGGCA-AATTC----TGTTA--TTTTTAA-A-AA-ATGCGT----TTATTTTTAATAAT------GTAT-----------AAATTagcgtatattattctaggatt
gi|3 : -----AATG---------CACA--T-------T---------TT---T--GTT--TT----TA-TTTTATTTTA-TTT-TATTTCAAAGATATATTTATATAAT-----CA---A--GTTT---AT--AATTTGTC---TCA---GCTTTCAAGCTTACTTGCTGTTTAA-CAG--CT-----CA----TATTC---CA---C---ATGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcatCATGAACATA-ACTCCACCA--AAAAT----AAA-TTGAG---GCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TC--AG-A-AA-G-G-TATTTGAAAA-CGTTTTTTTGAACTTTGCCATTGAGT--TAAC--TTGGCTTTTGCAAATTCTTAAAAAATATATTTT----G----A-AA------A--------T---G--TT---T-T--------AAAATT---TGT-----TTTT-AAAA--TAT-C--ATTTT--TA-ACC--GAAATG-----T-----GTCC--TGTATT----AGAATAAGGA-GTAATCATTTGAT--TATA--------T---G--GTCAATAA-A-----------TGT-G-TAAA-ATTTGAAA-ATAATCT-------G--AAGTT----------GGA-TGTA--TGA-T----AATTA--GC-A--T-TTT------AA--A-----------ACG-GT--AT---------A------T-TT---T------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-TG-TTGTG-AAA-ATC--------TT-----T--TTT-ACAAAT---TAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAACTTTTGAA-----------GAGAAAAACAAAATTTT------GTAAAAATAT---A-A-------ATTTTATGGCA-AAAAA----AGTT---TTT---A-A-AT-ATGTGT----TTATTTTTTATTTT------G--T-----------TAATTC-----AATA---------TATA--T-------T---------TG---G--GGT--TTA-A-TA-TTGTTTTTTA-ATA-TATTGCC----CATATTTGTTAAAG-----CATT-G--TTTTTGCAT--AAAGTACCAGAAAA---GCTC-CAA----ACTTGGT-TTTAA-AAA--ATA--AACA----TATAC---CA---TGGGAAGT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : ---G---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CT--AG-A-AAAG-G-TAATTGAAAA-TGGTTTT---AGCATTGC--TTAAGA--TAAC--TTCGCTTA---GAGTTATGTACAAATATTTTTT----A----A-AA-----------------------------C--------AAAATG---AAT-----TT---TAAA---------ATTT------GCT--AAAACA------------------GTATTTTAAA---C--CGA-AAAATAGTTTTCT--TATA--------TTGGA--GT-AGTAA-A-----------TTC-GTCA-----TTGTCA-AT----T-------A--AT---------------A-TGTA--ATA-T-----------------T-TTT------GA--A-------------G-AT--AA---------A------TGTTGGAT------T-----TAAGATA-T--------A-G--------A--G---GTCGA-------------G-CTATG-AAA-AGCT-------GTATACGT--TTT-ATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAATTTTAAA-----------TAAAAATACCAAATTTTCCCCCAA-AAAAACATTAGG-A-------ATGTTAA---A-AAAAC----TGTTACTTTT---A-A-AT-GTGCAT----TTAGTTTTGATAAT------A--T-----------TA--TT-----AAAA---------TGTAAGT-------T---------TT---C--AGG--TTA-C-TA-TTGCTTTTGA-ATA-TATTGTC----CATACCTGTATTAG-----CATT-T--TTTTGGCAT--ATAGTATCAGCATA---GCTC-CAA----TCTTGTT-TTTAA-AAA--CTATGCACACTAGTATAC---TA---T--aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatatttttatatactattaaaatgttataatatCATACACATATACTACACCAGTACAATCCACAAA-CTAAGTTAG---G----ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CT--AG-TTAA-G-G-TAATTGAAAA-CAGTTTTCTGAATC-TGC--TT-AGT--TAAC--TAAGCATAAGATAAATCTTTACAAATACTTTTT----G----T-AA------A----------------T---T-T--------AAAATT---TGT-----TA---AAAAG-CAT-T---TTTT--TA-CCC--AAAAAAAAAAGT-----TTTT--TGTATT------------GATGTCATAATTttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataTAAATTTT-AAATTGATGA----A----TAGGATTTTTTAAA-----------TAAAAAAACACAAATTT------G-TAAAATAA---A-A-------ATTTTGGGGCA-AAAGCTGTTATTT---CTT---G-A-AT-ATGCCT----TTATTCTTAATAA----------T-----------TAGTTT-----AAAACCCT-----TAT---T-------T---------CT---T--GAA--TTG-A-TA-TTATTTTTCA-ATA-TATTACT----TATCCTTGCTTAAG-----CATTAT--TTTTGGCAT--AACGTATCAGAGCA---GTTC-AAA----GTTTGTT-TTAAA-AAAACGTA--CATATTTTTATAC---GA---TTATATGT---AACACCGTGGGGatgtgctctccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATATATA--CTC-------AAAAT----AAAAGCAAA---G---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCT--AA-A-AA-G-G--AATTGGAAG-TGATTTTCTGAACTTTGC---TAAGTTATAAC--TTGGCTTAAGAGAATTCTTAACAAATATTTTTTTAACA----A-AAAC----A--------T---GAATT---T-C--------AAAATT---TGT-----TA---AAAA--TA--------CT--TACCCC--AAAATAGT---T-----TTCTAATATATT--------T--GT--GTAATAAACTGATTGTATA--------C---A--GCCGATAA-AAGATATTTTATTAT-G-TAAG-ATTTGAAA-ATAA-------------ATAAT----------GG-----------------GACCA--GC-A--G-TTC------AG--T-----------TCA-GC--A----------G------T-TT---T------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-TG-TTG-A-AGA-ACC--------AT-----G--GTT-AAACCT---TAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTT---------------------------TTTTTTAT--A-AAAACAAT---A---------ATTTTGAGGCA-AAAACTCTTATTT---TTT---A-T-GT-ATGCGT----TTATCTTTAATAAT------G--T-----------AAATTA-----AAAA---------TAAAG-T-------T---------TT---A--GGG--TTA-A-TA-ATGTTTTTGA-ATAGTGTAGC-------------TATCAG-------------TTTTGG--G--AAAGTAAAAGTGCA---GCTC-CAA----ACTTGTT-CTTAA-AAA--CTaataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CT--AG-A-AA-A-GATAATTGAAAA-TGG-------AACCTTGC----------TAA---TTAAGTTAATC--ATTATT--CAAAT-TATTCT----T----ACAA------A--------T---A--TT---T-TT-------GAGA------------------AAAA--AAT-TGAATTTT--T-------AAAAT---------------T--TGT--T--------T--GAA---AAAAATCTGATGTTAGA--------T---G-------TAAGA-----------TTTAG-CGGATATTTACAGCATA-CCT-------G--ATTTTTTAACACCAAAAA-TGTAT-ACA-T------TT----T-A--T-TTT------GG----------------G-G--------------A------T-TT---T------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-TG-TTGGG-AAA-ACA--------GT-----T--T-----GA-----TAGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAACTTTTCAA-----------GAAAGCTACAAAATTTT------G-A---------------------------GGCA-AAAATTGT-AGTT---TTT---T-A-ATTATGCGT----TCGTTTTTAATAAT------G--T-----------AAATTA-----AAAA---------TATA--T-------T---------TT---TTAGGT--TTA-AGTA-TTGTTTTTGA-ATA-TATTGCT----CATACTTGTATCAG-----CATT-C--TTTTGACAT--AAAGTACTGGAGCA---GATC-CAA----ACTCATT-TTTAA-AAA--CTA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatATAAATTCTAC-----TGG---C-------C-------A-------A-------A--------------CTGTTCGGTGGACAAAC-TC--AT-A-AA-A-T-TGAACGAAAA-CGATTGTTTGAACCTTGC-TTTGA-----AAT--CTAATTTTA--AAATT-TGTAAAAATATtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : TGCTTT----G----A-AATCT---A------------A--TT---T-T--------AAAATT---TGT-----------AAA--AAT----ATATT--TA-ATCCGGAAATAGT---T-----TTCT--TGTATT-----------GGA-GTAATATATTTAT--TATA--------T---G--GTCAGTAA-A-----------TAT-A-CAAA-AAATGAAT-ATAAGCTGATGTTAG--ATGTA----------AGACTGCATTATA-TGTGAAAACA--GC-A--TATTTCACACCAA--ATTGTATAGTTTACG-GT--TT---------A------T-TT---TGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-TG-TTGTA-AAA-ACA--------AT-----T--TTT-ACAATT---TAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAATTTTAAA-----------GAAAAATACA----TTT------G---CGATTT---C-A-------ATT------------AC----A-TT---GTT---A-A-AT-ATATTTATACTTATTTTTT-TTTTGGGGGGG--TGGGGGGGGGGGGGGTAA-----AACAT--------TATA--T-------T-----------------GTT--TTAGA-TA--TGTTTT--------------C----AATACTTGTGGCAG-------TC-A--TTTT-GCAT--AAAGAATCAGAGCAGGTGCTT-CGA----ACTTGTT-TTTAA-AAA--ATA--TAatttaatccggaaatagttttcttgtattggagtaatatatttattatatggtcagtaaatatacaaaaaatgaatataagctgatgttagatgtaagactgcattatatgtgaaaacagcatatttcacaccaaattgtatagtttacggtttattttgaaattttttgaaaatcgaagtgtggttcaatttaattggtgttgtaaaaacaatttttacaatttaatttaatgttgaaagaccataattatatcttaaattgaaataataaattttaaagaaaaatacatttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 333333333333 7777777777777777777777777777777777777777777777 111 111111111111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 2222222 11111111 11111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 555555555555555555555555555555555555555555555555 111111111111 11111111111 22222222 11111111111111 2222222222222222222222 111 222222222 3333333333333333333333333333 1111 111 22222222222 111 1 1 333333333
lowQualScore : 1 444444444444 9999 4 333333333333 44 88888 44 9999999999999999999999999999999999999999999999 3 6 3 111 6 3 44 5 0 999999999999999 99 7777 44 2 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 1 55 0 44 3 1 0000000 3 4 99 66666666 777 3 55555555555 3 0 3 3 0 4 44 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333 3 222222222222222222222222222222222222222222222222 3 3 999999999999 2 3 2 777777777 5 0 55555555555 0 2 22222222 77777777777777 3 7777777777777777777777 555 4 5 44 1 999999 1 000000000 0000000000000000000000000000 3 44 3 33 33 2 66666 1 22 444 77777 55 44 0 888 6 6666 2 3 3 3 3 999 8888 111 44444444444 444 0 1 1 5 1 1 666666666
lowQualScore : . ............ .... . ............ .. ..... .. .............................................. . . . ... . . .. . . ............... .. .... .. . ........................................................................................................ . . .. . .. . . ....... . . .. ........ ... . ........... . . . . . . .. ............................................................................................................................................................................ ... . ................................................ . . ............ . . . ......... . . ........... . . ........ .............. . ...................... ... . . .. . ...... . ......... ............................ . .. . .. .. . ..... . .. ... ..... .. .. . ... . .... . . . . . ... .... ... ........... ... . . . . . . .........
lowQualScore : 0 111111111111 4444 4 222222222222 55 33333 66 0000000000000000000000000000000000000000000000 1 2 1 555 2 1 22 2 3 111111111111111 22 4444 66 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 88 0 66 3 2 6666666 1 0 22 77777777 111 3 88888888888 3 5 3 3 5 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 999 6 666666666666666666666666666666666666666666666666 6 6 111111111111 0 3 9 222222222 2 3 88888888888 6 0 44444444 11111111111111 6 9999999999999999999999 000 0 9 66 4 333333 0 444444444 9999999999999999999999999999 2 66 1 44 99 9 77777 4 00 999 77777 55 22 8 555 2 5555 5 3 3 3 3 444 9999 777 11111111111 000 6 0 0 0 0 0 555555555
consensus : CATATATATA-ACTCCACCA--AAAAT----AAA-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----G----AA--------A------AT---G--TT---T-T--------AAAATT---TGT-----TT---AAAA--AAT-CA--TTTT--TA-A--CC----AAA-ATAG--TTT-CT--T-GTATT----T--GGA-GTAATAAATTGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-TG-TTGTGAAAA-------------C--NGT-----TTTT-ACAANT---TAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAACTTTTAAA-----------GAAAAATACAAAATTTT------G-AAAAATAT---A-A-------ATTTTAGGGCA-AAAAC----T---G----T----T---TTT---AA-ATATGCGTTTATTTTTAATAATG--TAAATTN-----AAAA---------TATA--T-------T---------TT---T--GGNTT--AA-TATTGTTTTT-GA-ATA-TATTGCC----CATACTTGTANNAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGCA---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATANATATA-ACTCCACCA--AAAAT----AAA-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TGA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----G----AA--------A------AT---G--TT---T-T--------AAAATT---TGT-----TT---AAAA--AAT-CA--TTTT--TA-A--CC----AAA-ATAG--TTT-CT--T-GTATT----T--GGA-GTAATAANTTGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-TG-TTGTGAAAA-------------C--CGT-----TTTT-ACAANT---TAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAACTTTTAAA-----------GAAAAATACAAAATTTT------G-AAAAATAT---A-A-------ATTTTAGGGCA-AAAAC----N---G----T----T---TTT---AA-ATATGCGTTTATTTTTAATAATG--TAAATTN-----AANA---------TATA--T-------T---------TT---T--GGTTT--AA-TATTGTTTTT-GA-ATA-TATTGCC----CATACTTGTANNAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGCA---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
gi|1 : -ACTCC--TA--AAAAT----AAA-TTAAG---GTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-ATAGTA-AA-G-A-TAAATG-ACTATGGTTTTCTGAAC------------AAAGGT--TAAC--TTAGCTTTTGCAAATTCTT--TTCAAATAATTTTT----G----AAGAAAAAACA------GT---GAATT---T-T--------AAAATT---TG------TT---AAAG--AATGCA--TTTT--CA-AG-CT----AAATATAGTATTT-CT--T-GT-TT----T--GGA-GTAACAAATTAAT--TATA--------TA--GTAAATAA-A-----------TAT-GCTAG-ATTAGAAA-ATAATCTG--A-------TG------------A-GA---TA-AAA-AA-T-------TAAGA--GG-AT-TTT------AACTA-----------GC--ATATCCA------A------TTTT------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtac-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-TA-TTATGAAAA-------------C--GTT-----TTTT-ACAATT---AAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAATTTTTAAA-----------GAATAACA-AAAATTTT--------AAAAATAC---A-T-------ATTTTTGGGTT-AAAAC----TCTTG----T----T---TTTT--AA-ATATGCACTCATTTT----GATA--TAAAT-A-----AACA---------TCTA--T-------TGGAAATAAGTTACAT--GATTCTCAA-TGTTTTTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaATATA-A-TCCAT----AAAAT----ATG-TTAAG---GACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CTAG-A-AA-ATG-TAATTG-AAAATGGTTTTCTTGACCTTG---T---TAG--GT--TGAC--TTAACTTTAGAGAATTCTT--TACAATTTTATTAT----G----AA--------AGAAGAAATAAAG------------------AAAA------------------AAAA--AGG-CA--TTTT--TT-A--CCCG--AAA-ATAAAATTT-CT--T-GTATT-------GGA-TTAATAAGTTAAT--TATAATTTTTATTGAAGTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------GGTA----------A-GA-TGTA-AGA-T--T-------A---A--GAGAT-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TTTT------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-TA-CTGTGTAAA-------------CATTGT-----TTTTTACAATT---TATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAACTTTTAAA-----------GAAAAATTCA---TTTT------G-ACATATAT---A-C-------ATTTTAGGGCA-AAAAC----T---G------------------------------TTAT----------------ATTC-----ATAA---------TATA--C-------T---------T--------------AA-TATTGTTTTT-A-----------CC----CATAACTGTAATGACATT-C-A-----TTTGGCAT--AAAGTATCAGTGCA----CTCACAA----ACGTGTT-CT-TAA-AAAC-aattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|11 : tTA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CCAG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC------TAA--GT--TCAA--TTAGATTAAGCGAATTCTT--TAACAATATTTTTT----T----TT--------T------AT---G--TTAGATGT--------AAGATT---TGT-----GC---ATACCTGAT-TT--TTTT--CACA--CC----AAA-AT
gi|11 : aggatcataatt---------A------TTTT------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GATG-TTGTGAAAT-------------C--AGT-----TTTT-ACAAAT---AAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAACTTTAAAA-----------GAAAAATACAAAAAATT------G-AAAAATAT---ATATTTTTTTATTTTAGTACATACTGT----T---G----T----T---TTT---AATACATATGTTTATTTTGTATAATG--TAAATTA-----TATA---------TATA--TTTATATGT---------TT---T--TGTTT--AA-TATTGTTTTT-GA-ATA-TATATCA----CATACTTTTTATAGCATT-T-T-----GTTGTCAT--CAAGTACCAGAACA---GC-------------TGTT-CC---A-AAAC-TA--CACA----Tgtagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagT----AAG-TTGAG---G---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CCAGAA-AA-G-G-TAATTG-AAAACGGTTTTA-GAACCTTGC------CAA--GT--AAAC--TTAGCTGAAGCGAATTGTT--TAAAAA-ATTT------------AA--------A--------------TT---T-T--------A-----------------T---AAAA--A-------------------------AAA-ATAGT-TTT-CT--T-GTA-T----T--GGG-GTAATAA----AT--TATA--------TG--GTCAATAA-A-----------AGT-GC-AC-ATTTTAAA-ATAATATGGTG-------TGTT----------A-AA-TGTA-AGA-T--T-------T---AAGGA-AT-TTT------AA--A-----------ATA-ATAT---------ACCAGATTTTT------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : ATATCTATA--CTCCAC----AAAAT----AAG-TTAAG---G---G---aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|13 : taagttgaggaacataccacatataaattctactggactaaaattctaactgttctgtaaacatacccagaaaaggtaattgaaaacggttttagaaccttgccaagtaaacttagctgaagcgaattgtttaaaaaatttaaattttataaaaaaaaatagttttcttgtattggggtaataaattatatggtcaataaaagtgcacattttaaaataatatggtgtgttaaatgtaagatttaaggaattttaaaataatataccagatttttttcaaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggC-TTGG-A-AA-G-GGTAAATG-AAAACGGGATTTTGAACATGGC--T---GGA---T--CAACATTTTTCTTTAGAGAATTCTT--TACAAATATTCTTT---------------------------T---T--TT---T-TTTTTAAAAAAAATT---AAT-----TT---TAAA--ATT-AA--TTTTCTTG-A--AA----AAA-ATAC--TTT-TT--TTGTATT-------GGA-TTAATAAATTGTT--TATA--------TA--GTCAAGAA-A-----------TAT-GCAAA-ATATAAAA-A-----TG--A-------CATT---------------T-----------T-------T----------T-TTT------AA--A-----------A-----AA---------A----------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-TG-TTATGAAAA-------------C--AGT---------------G---TAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA---------------------AAAAACAC----TTTTC-----G-AAAAATAT---A-A-------ATTTTGGAGCA-caatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatatataaatc----G----AA--------A--------------TT---T-T--------AGAATT---TGT-----T----AAAA--ACG-CC--TTTT--TA-T--CTT---AAA-AAAG--TTTTCT--T-GTATT----T--G-A-CTTTTAAAAAGAT--TATATA------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------AGGA-TTT--AGA-TA-------------------AT-TTA------AA--A-----------AC
gi|15 : ATTTTTAATAAAG--CAAATTTTGAGGAATG---------TATT--T-------T---------TT---TA-GGTTG--AG-GATT---TTT-AATATA-TATTGCC----CATGGTTGTAATAGCATT-CAT-----TTT-------------TCGGAGTAA--GCTC-CAA----ACCTGTT-TT-TAA-ATCC-TA--AAC------ATAC---CATTTT---A-ATGT---AACATCaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|16 : T----T--GGA-GTAATAAATTGAT--TATA--------CT--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ACAATCTG--A-------TAT-------------------A-AGA-T--T-------T---A--GG-A--------------------------------------------A------TTTT------T---------AAAA--------------C-----A--G---TTTATT-C-----G-A-TT-TTGTCACAC-------------C--AGA-----ATGT-A---TC---TATTT--TA-TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-TATCAAA-----------Gtaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|17 : TTTT-GA-TTA-TATTGCC----CATACTTTTATTAGCATT-C-T-----CTTGGCAT--AAAGTATC--AGCA---GTTC-CAA----ACAT-TT-TA-TAAGAAAC-TG--TAGA----GATACGATCA---T---A-ATGT---AACATCTTATAG
gi|18 : tttaAAT----AAA-ATAAG-----------TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CTAG-A-AA-ATG-TAATTG-AAAACGGTTTTgaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatattatgtatacacTAACG--TAAAG-A-----AAAA---------TATA----------------------------AGGTT--AA-TATTGTTTTT-TA-ATA-TATTGCC----TATAATTGTATAAGGTTT-C-TGTTACTTT--C-T--AAAGTATCAGAGCA---GCTC-CAA----AC
gi|2 : ATATA-A-TACTCCA--AAAAT----AAA-TTAAG---G---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CTAG-A-AAAG-G-TAATTG-AATACGGTTTTCTGAACCT-----T---CAA-------AAC--TTAGCTTTAGCAAATTGTT--TA-AAACAAGTTTT----GAGAAAA--------A------ATGA-G--TT---T-T--------GAAATGAAATCTAACAATTGAAAAAA--AAG-CA--TTTT--TA-A--T---------------TTT-CT--T-CTA-T----T--GGA-GTAATAACTTGAC--TATT--------TG-----------------------TAT-----A-ACTTGAAA-AAAAATTA--A-------TATA----------A-CA-TGTA-AGACTG-A-------G---A--GG-CT-ATT------AA--A-----------ACA-GCATTCCA-----G------TTTT------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-AGATTTTGAAAAATCGGAGGATGGTC--CAT-----TT----CAACT---AAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAGTCTTAAAATGATACAAATGAAAACTACAAAATTTT------G--AAAATAC---A-A-------ATTTTAGGGCA-AAAAC----T---A----T----T---TTTA--AA-ATATGCGTTTGTTTTT--TAATG--TAAATTT-----AAAAAAAATACAGTATA--T-------A---------TT---T--GGGCC--AG-TTTTGCTTTT-AA-ACA-TAGTGCC----CATATGTGTGATAGCATT-C-T-----TTTATAATAAAAAATATAAGAGCA---GCTC-TAA----AC-TGTT-TT-T-G-AAAC-TA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAAAATTTT------G-AAAAACAT---A-A-------ATTTTAGGGCA-AATTC----T---G----T----TA--TTTTTAAA-AAATGCGTTTATTTTTAATAATGTATAAATTagcgtatattattctaggatt
gi|3 : -----AATG---------CACA--T-------T---------TT---T--GTTTT--TA-TTTTATTTT---A-TTT-TATTTCAAAGATATATTTATATAATCAAG-T-T-----T-----AT--AATTTGTC---TCA---GCTTTCAAGCTTACTTGCTGTT-TAA-CAGC-T-----CA----TATTC---CA---C---A--TGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcatCATGAACATA-ACTCCACCA--AAAAT----AAA-TTGAG---GCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TCAG-A-AA-G-G-TATTTG-AAAACGTTTTTTTGAACTTTGCCAT---TGA--GT--TAAC--TTGGCTTTTGCAAATTCTT--AAAAAATATATTTT----G----AA--------A------AT---G--TT---T-T--------AAAATT---TGT-----TTTT-AAAA--TAT-CA--TTTT--TA-A--CC----GAA-AT-G--TGT-CC--T-GTATTAGAATAAGGA-GTAATCATTTGAT--TATA--------TG--GTCAATAA-A-----------TGT-GTAAA-ATTTGAAA-ATAATCTG--A-------AGTT----------G-GA-TGTA-TGA-TAAT-------T---A--GC-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-TG-TTGTGAAAA-------------T--CTT-----TTTT-ACAAAT---TAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAACTTTTGAA-----------GAGAAAAACAAAATTTT------GTAAAAATAT---A-A-------ATTTTATGGCA-AAAAA----A---G----T----T---TTT---AA-ATATGTGTTTATTTTTTATTTTG--TTAATTC-----AATA---------TATA--T-------T---------TG---G--GGTTT--AA-TATTGTTTTT-TA-ATA-TATTGCC----CATATTTGTTAAAGCATT-G-T-----TTTTGCAT--AAAGTACCAGAAAA---GCTC-CAA----ACTTGGT-TT-TAA-AAAA-TA--AACA----TATAC---CA---TGGGA-A-GT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : ---G---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CTAG-A-AAAG-G-TAATTG-AAAATGGTTTT---AGCATTGC--T---TAA--GA--TAAC--TTCGCTTA---GAGTTATG--TACAAATATTTTTT----A----AA--------ACAAA--AT---GAATT---T-T--------AAAATT---TGC-----T----AAAA--CAG-TA--TTTT--AA-A--CCGA--AAA-ATAG--TTTTCT--T-ATATT-------GGA-GTAGTAAATTCGT--CAT---------TG---TCAATTA-A-----------TAT-GTAAT-ATTT----------TTG--A---------------------A-GA-T----AAA-TG-T-------T---G--GA----TTT------AA----------------G-ATAT---------A-------------------------GA------------G-GTCG-----A--G---CT--------------------ATGAAAAG------------C--TGTATACGTTTT-ATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAATTTTAAA-----------TAAAAATACCAAATTTTCCCCCAA-AAAAACATTAGG-A-------ATGTTAA---A-AAAAC----T---G----T----TACTTTT---AA-ATGTGCATTTAGTTTTGATAATA--TTA--TT-----AAAA---------TGTAAGT-------T---------TT---C--AGGTT--AC-TATTGCTTTT-GA-ATA-TATTGTC----CATACCTGTATTAGCATT-T-T-----TTTGGCAT--ATAGTATCAGCATA---GCTC-CAA----TCTTGTT-TT-TAA-AAAC-TATGCACACTAGTATAC---TA---T---aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatatttttatatactattaaaatgttataatatCATACACATATACTACACCAGTACAATCCACAAA-CTAAGTTAG---G----ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CTAG-TTAA-G-G-TAATTG-AAAACAGTTTTCTGAATC-TGC--T---T-A--GT--TAAC--TAAGCATAAGATAAATCTT--TACAAATACTTTTT----G----TA--------A------A--------T---T-T--------AAAATT---TGT-----T-----AAA--AAG-CATTTTTT--TA-C--CCAAAAAAA-AAAG--TTT-TT--T-GTATT--------GATGTCATAATTttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataTAAATTTT-AAATTGATGA----A----TAGGATTTTTTAAA-----------TAAAAAAACACAAATTT------G-TAAAATAA---A-A-------ATTTTGGGGCA-AAAGC----T---GTTATT----T---CTT---GA-ATATGCCTTTATTCTTAATAAT---T-AGTTT-----AAAACCCT-----TAT---T-------T---------CT---T--GAATT--GA-TATTATTTTT-CA-ATA-TATTACT----TATCCTTGCTTAAGCATTAT-T-----TTTGGCAT--AACGTATCAGAGCA---GTTC-AAA----GTTTGTT-TTAAAA-AAACGTA--CATATTTTTATAC---GAT--T---ATATGT---AACACCGTGGGGatgtgctctccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATATATA--CTC-------AAAAT----AAAAGCAAA---G---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCTAA-A-AA-G-G--AATTG-GAAGTGATTTTCTGAACTTTGC------TAA--GTTATAAC--TTGGCTTAAGAGAATTCTT--AACAAATATTTTTTTAACA----AA--------AAC----AT---GAATT---T-C--------AAAATT---TGT-----T-----AAA--AAT--A--CTT------ACCCC----AAA-ATAGT-TTT-CTAAT-ATATT----T--GT--GTAATAAACTGATTGTATA--------CA--GCCGATAA-AAGATATTTTATTAT-GTAAG-ATTTGAAA-ATAA------A-------T---------------AA-TG---GG---A-C-------C---A--GC-AG-TTC------AG--T-----------TCA-GCA----------G------TTTT------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-TG-TTG-AAGAA-------------C--CAT-----GGTT-AAACCT---TAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTT---------------------------TTTTTTA---T-AAAAACAA---T-A-------ATTTTGAGGCA-AAAACTCTTA---T----T----T---TTT---AT-GTATGCGTTTATCTTTAATAATG--TAAATTA-----AAAA---------TAAA--G-------T---------TT---TA-GGGTT--AA-TAATGTTTTT-GA-ATAGTGTAGC-------------TATCAG-------T-----TTTGG--G--AAAGTAAAAGTGCA---GCTC-CAA----ACTTGTT-CT-TAA-AAAC-Taataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CTAG-A-AA-A-GATAATTG-AAAATGG-------AACCTTGC--TAATTAA--GT--TAATCATTA--TTCA---AATTATTCTTACAAATATTTTT-----G----AG--------A------A-----------------------AAAAAT---TG------------------A---A--TTTT--TA-A----------A-AT---------T--T-GT--T----T--GAA---AAAAATCTGATGTTAGA--------TG-------TAAGA-----------TTTAGCGGATATTTACAGCATA-CCTG--A-------TTTTTTAACACCAAA-AA-TGTATACA-TT-T-------T---A------T-TTT------GG----------------G-G------------A------TTTT------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-TG-TTGGGAAAA-------------C--AGT-----TT-----GA-----TAGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAACTTTTCAA-----------GAAAGCTACAAAATTTT------G-A---------------------------GGCA-AAAAT----T---G----TAGTTT---TTT---AA-TTATGCGTTCGTTTTTAATAATG--TAAATTA-----AAAA---------TATA--T-------T---------TT---TTAGGTTT--AAGTATTGTTTTT-GA-ATA-TATTGCT----CATACTTGTATCAGCATT-C-T-----TTTGACAT--AAAGTACTGGAGCA---GATC-CAA----ACTCATT-TT-TAA-AAAC-TA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatATAAATTCTAC-----TGG---C-------C-------A-------A-------A--------------CTGTTCGGTGGACAAAC-TCAT-A-AA-A-T-TGAACG-AAAACGAT-----------TGT--T---TGA--------AC--CTTGCTTT---GAAATCT------------------------------------A------AT-------T---T-T--------AAAATT---TGT-----------AAA--AAT--A--TATT--TA-A--TCCG--GAA-ATAG--TTTTCT--T-GTATT-------GGA-GTAATATATTTAT--TATA--------TG--GTCAGTAA-A-----------TAT-ACAAA-AAATGAAT-ATAAGCTG--ATGTTAGATGTA----------A-GACTGCA-TTA-TA-TGTGAAAAC---A--GC-ATATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TTTTGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-TG-TTGTAAAAA-------------C--AAT-----TTTT-ACAATT---TAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAATTTTAAA-----------GAAAAATACAtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : A-TATTGTTTTA-GA--TA-TGTTTTC----AATACTTGTGGCAG---T-C-A-----TTTTGCAT--AAAGAATCAGAGCAGGTGCTT-CGA----ACTTGTT-TT-TAA-AAAA-TA--TAtttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333 333333333333 8888888888888888888888888888888888888888888888 111 11111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 2222222 11111111 11111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 333333333333333333333333333333333333333333333333 111111111111 11111111111 11111111111 11111111111111 111111111111111111 111 111111111111 222222222 222222222222 1111 111 22222222222 111 1 1 333333333
lowQualScore : 777777777777 9999 8888 4 4 333333333333 44 99999 55 8888888888888888888888888888888888888888888888 3 6 3 222 6 3 2 4 1 44444 666666 55 22 22 0 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 1 11 44 0 44 3 1 0000000 3 1 3 0 88 55555555 777 3 55555555555 3 0 3 3 0 4 44 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333 3 999999999999999999999999999999999999999999999999 3 3 999999999999 2 3 2 777777777 5 0 55555555555 2 88888888888 77777777777777 4 999999999999999999 555 4 77 0 44 1 222222222222 222222222 55 777777777777 3 666 3 7777 33 3 3 1 22 0 888888888 3 44 3 555 6 6666 2 3 3 3 3 999 8888 111 44444444444 444 0 1 1 5 1 1 666666666
lowQualScore : ............ .... .... . . ............ .. ..... .. .............................................. . . . ... . . . . . ..... ...... .. .. .. . . .......................................................................................................... . . .. .. . .. . . ....... . . . . .. ........ ... . ........... . . . . . . .. ............................................................................................................................................................................ ... . ................................................ . . ............ . . . ......... . . ........... . ........... .............. . .................. ... . .. . .. . ............ ......... .. ............ . ... . .... .. . . . .. . ......... . .. . ... . .... . . . . . ... .... ... ........... ... . . . . . . .........
lowQualScore : 888888888888 4444 5555 0 0 222222222222 55 11111 00 1111111111111111111111111111111111111111111111 3 7 3 000 7 3 0 3 2 55555 111111 00 55 55 2 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 22 66 0 66 3 2 6666666 1 6 1 2 55 44444444 777 3 88888888888 3 5 3 3 5 5 66 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 999 6 222222222222222222222222222222222222222222222222 6 6 111111111111 0 3 9 222222222 2 3 88888888888 0 88888888888 11111111111111 0 666666666666666666 000 0 44 5 66 4 333333333333 333333333 00 222222222222 5 444 3 1111 22 1 1 0 00 4 555555555 8 66 1 444 2 5555 5 3 3 3 3 444 9999 777 11111111111 000 6 0 0 0 0 0 555555555
consensus : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--TTAA--GT--TAAC--TTAGCTTNAGCGAATTCTTTACAAATATTTTTT----G----AAA------A--------T---G--TT---T-T--------AAAATT---TGT-----T----AAAA--AAT-C--A--TTTT--TA-A--CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-TG-TTGTGAAA---------A-CG--GT-----T--TTT-ACAANT---TAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAACTTTTAAA-----------GAAAAATACAAAATTTT------G-A--AAAATAT---A-A-------ATTTTAGGGCAAAA-ACT----G----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAAA------TTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TATTG----TTTTT-GA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--TTAA--GT--TAAC--TTAGCTTNAGCGAATTCTTTACAAATATTTTTT----G----AAA------A--------T---G--TT---T-T--------AAAATT---TGT-----TT---AAAA--AAT-C--A--TTTT--TA-A--CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-TG-TTGTGAAA---------A-CN--GT-----T--TTT-ACAANT---TAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAACTTTTAAA-----------GAAAAATACAAAATTTT------G-A--AAAATAT---A-A-------ATTTTAGGGCAAAA-ACT----G----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAAA------TTN---AAAA---------TATA--TTT-------TT--GGNTT---AA-TATTG----TTTTT-GA-ATA-TATTGCCCATACTTGTANNAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
gi|1 : -ACTCC--TA--AAA----AT----AA-A-TTAAG---GTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-ATAGTA-AA-G-A-TAAATG-ACTATGGTTTTCTGAAC---------AAAGGT--TAAC--TTAGCTTTTGCAAATTCTTTTCAAATAATTTTT----G----AAG------AAAAAACAGT---GAATT---T-T--------AAAATT---TGT-----T----AAAG--AATGC--A--TTTT--CA-AG-CT----AAATATAG--TATTT-CT--T-GT-TT----T--GGA-GTAACAAAT-TAAT--TATA--------TA--GTAAATAA-A-----------TAT-GCTAG-ATTAGAAA-ATAATCTG--A-------TG------------A-GA---TA-AAA-AA-T-------TAAGA--GG-AT-TTT------AACTA-----------GC--ATATCCA------A------TTTT------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtac-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-TA-TTATGAAA---------A-CG--TT-----T--TTT-ACAATT---AAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAATTTTTAAA-----------GAATAACA-AAAATTTT--------A--AAAATAC---A-T-------ATTTTTGGGTTAAA-ACTCTT-G----T----T---TTTT--AA-ATATGCACTCATTTTGATATAA-A--TAAACATCTATTG---GAAA---------TAAG--TTA-------CA--TGATTCTCAA-TGTTT----TTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaTATATA-A-TCCAT----AAA----AT----AT-G-TTAAG---GACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CTAG-A-AA-ATG-TAATTG-AAAATGGTTTTCTTGACCTTG---TTAG--GT--TGAC--TTAACTTTAGAGAATTCTTTACAATTTTATTAT----G----AAAGAAGAAA--------TAAAG------------------AAAA------------------AAAA--AGG-C--A--TTTT--TT-A--CCCG--AAA-ATAAAAT--TT-CT--T-GTATT-------GGA-TTAATAAGT-TAAT--TATAATTTTTATTGAAGTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------GGTA----------A-GA-TGTA-AGA-T--T-------A---A--GAGAT-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TTTT------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-TA-CTGTGTAA---------A-CATTGT-----T--TTTTACAATT---TATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAACTTTTAAA-----------GAAAAATTCA---TTTT------G-A--CATATAT---A-C-------ATTTTAGGGCAAAA-ACT----G----T----T------------ATA----TTCAT--------------------------------AA---------TATA--CTT-------------------AA-TATTG----TTT------------TTACCCATAACTGTAATGACATT-C-A-----TTTGGCAT--AAAGTATCAGTGC-A----CTCACAA----ACGTGTT-CT-TAA-AAAC-aattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|11 : TA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CCAG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC---TAA--GT--TCAA--TTAGATTAAGCGAATTCTTTAACAATATTTTTT----T----TTT------A--------T---G--TTAGATGT--------AAGATT---TGT-----GC---ATACCTGAT-T--T--TTTT--CACA--CC----AAA-AT
gi|11 : aggatcataatt---------A------TTTT------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GATG-TTGTGAAA---------T-CA--GT-----T--TTT-ACAAAT---AAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAACTTTAAAA-----------GAAAAATACAAAAAATT------G-A--AAAATAT---ATATTTTTTTATTTTAGTACATACTGTT----G----T----T---TTT---AATACATATGTTTATTTTGT-ATAATG--TAAA------TTA---TATA---------TATA--TTTATATGTTTT--TGTTT---AA-TATTG----TTTTT-GA-ATA-TATATCACATACTTTTTATAGCATT-T-T-----GTTGTCAT--CAAGTACCAGAAC-A---GCT-------------GTT-CC---A-AAAC-TA--CACA----Tgtagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagT----AA-G-TTGAG---G---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CCAGAA-AA-G-G-TAATTG-AAAACGGTTTTA-GAACCTTGC---CAA--GT--AAAC--TTAGCTGAAGCGAATTGTTTAAAAA-ATTT------------AAA----------------------TT---T-T--------A-----------------T---AAAA--A---------------------------AAA-ATAGT-T--TT-CT--T-GTA-T----T--GGG-GTAATAA-----AT--TATA--------TG--GTCAATAA-A-----------AGT-GC-AC-ATTTTAAA-ATAATATGGTG-------TGTT----------A-AA-TGTA-AGA-T--T-------T---AAGGA-AT-TTT------AA--A-----------ATA-ATAT---------ACCAGATTTTT------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : ATATCTATA--CTCCAC----AAA----AT----AA-G-TTAAG---G---G---aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|13 : taagttgaggaacataccacatataaattctactggactaaaattctaactgttctgtaaacatacccagaaaaggtaattgaaaacggttttagaaccttgccaagtaaacttagctgaagcgaattgtttaaaaaatttaaattttataaaaaaaaatagttttcttgtattggggtaataaattatatggtcaataaaagtgcacattttaaaataatatggtgtgttaaatgtaagatttaaggaattttaaaataatataccagatttttttcaaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggC-TTGG-A-AA-G-GGTAAATG-AAAACGGGATTTTGAACATGGC--TGGA---T--CAACATTTTTCTTTAGAGAATTCTTTACAAATATTCTTT---------------------------T---T--TT---T-TTTTTAAAAAAAATT---AAT-----TT---TAAA--ATT-A--A--TTTTCTTG-A--AA----AAA-ATAC--T--TT-TT--TTGTATT-------GGA-TTAATAAAT-TGTT--TATA--------TA--GTCAAGAA-A-----------TAT-GCAAA-ATATAAAA-A-----TG--A-------CATT---------------T-----------T-------T----------T-TTT------AA--A-----------A-----AA---------A----------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-TG-TTATGAAA---------A-CA--GT-----------------G---TAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA---------------------AAAAACAC----TTTTC-----G-A--AAAATAT---A-A-------ATTTTGGAGCAcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatatataaatc----G----AAA----------------------TT---T-T--------AGAATT---TGT-----T----AAAA--ACG-C--C--TTTT--TA-T--CTT---AAA-AAAG--T--TTTCT--T-GTATT----T--G-A-CTTTTAAAA-AGAT--TATATA------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------AGGA-TTT--AGA-TA-------------------AT-TTA------AA--A-----------AC
gi|15 : ATTTTTA-ATAAAG--CAAA------TTTTGAGGAA---------TGTA--TTT-------TT-----TT---AG--GTTGAGGATTTTT-AATATA-TATTGCCCATGGTTGTAATAGCATT-CAT-----TTT-------------TCGGAGTAA---GCTC-CAA----ACCTGTT-TT-TAA-ATCC-TA--AAC------ATAC---CATTTT---A-ATGT---AACATCaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|16 : T----T--GGA-GTAATAAAT-TGAT--TATA--------CT--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ACAATCTG--A-------TAT-------------------A-AGA-T--T-------T---A--GG-A--------------------------------------------A------TTTT------T---------AAAA--------------C-----A--G---TTTATT-C-----G-A-TT-TTGTCACA---------C-CA--GA-----A--TGT-A---TC---TATTT--TA-TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-TATCAAA-----------Gtaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|17 : TTTT-GA-TTA-TATTGCCCATACTTTTATTAGCATT-C-T-----CTTGGCAT--AAAGTATC--AGC-A---GTTC-CAA----ACAT-TT-TA-TAAGAAAC-TG--TAGA----GATACGATCA---T---A-ATGT---AACATCTTATAG
gi|18 : tttaTATGTATA-----CAC------A----AT----AA-A-ATAAG-----------TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CTAG-A-AA-ATG-TAATTG-AAAACGGTTTTgaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatatTAACG--TAAA------G-A---AAAA---------TATA----------------AGGTT---AA-TATTG----TTTTT-TA-ATA-TATTGCCTATAATTGTATAAGGTTT-C-TGTTACTTT--C-T--AAAGTATCAGAGC-A---GCTC-CAA----AC
gi|2 : ATATA-A-TACTCCA--AAA----AT----AA-A-TTAAG---G---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CTAG-A-AAAG-G-TAATTG-AATACGGTTTTCTGAACCT-----TCAA-------AAC--TTAGCTTTAGCAAATTGTTTA-AAACAAGTTTT----GAGAAAAA------A--------TGA-G--TT---T-T--------GAAATGAAATCTAACAATTGAAAAAA--AAG-C--A--TTTT--TA-A--T---------------T--TT-CT--T-CTA-T----T--GGA-GTAATAACT-TGAC--TATT--------TG-----------------------TAT-----A-ACTTGAAA-AAAAATTA--A-------TATA----------A-CA-TGTA-AGACTG-A-------G---A--GG-CT-ATT------AA--A-----------ACA-GCATTCCA-----G------TTTT------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-AGATTTTGAAAAATCGGAGGA-TG--GT-----CCATTT--CAACT---AAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAGTCTTAAAATGATACAAATGAAAACTACAAAATTTT------G----AAAATAC---A-A-------ATTTTAGGGCAAAA-ACT----A----T----T---TTTA--AA-ATATGCGTTTGTTTTT---TAATG--TAAA------TTT---AAAAAAAATACAGTATA--TAT-------TT--GGGCC---AG-TTTTG----CTTTT-AA-ACA-TAGTGCCCATATGTGTGATAGCATT-C-T-----TTTATAATAAAAAATATAAGAGC-A---GCTC-TAA----AC-TGTT-TT-T-G-AAAC-TA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAAAATTTT------G-A--AAAACAT---A-A-------ATTTTAGGGCAAAT-TCT----G----T----TA--TTTTTAAA-AAATGCGTTTATTTTTA-ATAATGTATAAA------TTagcgtatattattctaggatt
gi|3 : C-A---GCTTTCAAGCTTACTTGCTGTT-TAA-CAGC-T-----CA----TATTC---CA---C---A--TGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcataatgcacatttttgtttttattttattttattttatttcaaagatatatttatataatcaagtttataatttgtctCATGAACATA-ACTCCACCA--AAA----AT----AA-A-TTGAG---GCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TCAG-A-AA-G-G-TATTTG-AAAACGTTTTTTTGAACTTTGCCATTGA--GT--TAAC--TTGGCTTTTGCAAATTCTTAAAAAATATATTTT----G----AAA------A--------T---G--TT---T-T--------AAAATT---TGT-----TTTT-AAAA--TAT-C--A--TTTT--TA-A--CC----GAA-AT-G--T--GT-CC--T-GTATTAGAATAAGGA-GTAATCATT-TGAT--TATA--------TG--GTCAATAA-A-----------TGT-GTAAA-ATTTGAAA-ATAATCTG--A-------AGTT----------G-GA-TGTA-TGA-TAAT-------T---A--GC-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-TG-TTGTGAAA---------A-TC--TT-----T--TTT-ACAAAT---TAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAACTTTTGAA-----------GAGAAAAACAAAATTTT------GTA--AAAATAT---A-A-------ATTTTATGGCAAAA-AAA----G----T----T---TTT---AA-ATATGTGTTTATTTTTT-ATTTTG--TTAA------TTC---AATA---------TATA--TTT-------GG--GGTTT---AA-TATTG----TTTTT-TA-ATA-TATTGCCCATATTTGTTAAAGCATT-G-T-----TTTTGCAT--AAAGTACCAGAAA-A---GCTC-CAA----ACTTGGT-TT-TAA-AAAA-TA--AACA----TATAC---CA---TGGGA-A-GT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : TATATA----CTATTA--AAATGTTAT----AATA-T-------G---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CTAG-A-AAAG-G-TAATTG-AAAATGGTTTT---AGCATTGC--TTAA--GA--TAAC--TTCGCTTA---GAGTTATGTACAAATATTTTTT----A----AAACAAA--A--------T---GAATT---T-T--------AAAATT---TGC-----T----AAAA--CAG-T--A--TTTT--AA-A--CCGA--AAA-ATAG--T--TTTCT--T-ATATT-------GGA-GTAGTAAAT-TCGT--CAT---------TG---TCAATTA-A-----------TAT-GTAAT-ATTT----------TTG--A---------------------A-GA-T----AAA-TG-T-------T---G--GA----TTT------AA----------------G-ATAT---------A-------------------------GA------------G-GTCG-----A--G---CT--------------------ATGAAA---------AGCT--GTATACGT--TTT-ATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAATTTTAAA-----------TAAAAATACCAAATTTTCCCCCAA-A--AAAACATTAGG-A-------ATGTTAA---AAAA-ACT----G----T----TACTTTT---AA-ATGTGCATTTAGTTTTG-ATAATA--TTA--------TT---AAAA---------TGTAAGTTT-------TC--AGGTT---AC-TATTG----CTTTT-GA-ATA-TATTGTCCATACCTGTATTAGCATT-T-T-----TTTGGCAT--ATAGTATCAGCAT-A---GCTC-CAA----TCTTGTT-TT-TAA-AAAC-TATGCACACTAGTATAC---TA---T---aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatattttCATACACATATACTACACCAGTACA----ATCCACAA-A-CTAAGTTAG---G----ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CTAG-TTAA-G-G-TAATTG-AAAACAGTTTTCTGAATC-TGC--TT-A--GT--TAAC--TAAGCATAAGATAAATCTTTACAAATACTTTTT----G----TAA------A----------------T---T-T--------AAAATT---TGT-----T-----AAA--AAG-C--ATTTTTT--TA-C--CCAAAAAAA-AAAG--T--TT-TT--T-GTATT--------GATGTCATA------AT--TATG--------TG--CTCttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataTAAATTTT-AAATTGATGA----A----TAGGATTTTTTAAA-----------TAAAAAAACACAAATTT------G-T--AAAATAA---A-A-------ATTTTGGGGCAAAA-GCT----GTTATT----T---CTT---GA-ATATGCCTTTATTCTTA-ATAAT---T-AG------TTT---AAAACCCT-----TAT---TTC-------TT--GAATT---GA-TATTA----TTTTT-CA-ATA-TATTACTTATCCTTGCTTAAGCATTAT-T-----TTTGGCAT--AACGTATCAGAGC-A---GTTC-AAA----GTTTGTT-TTAAAA-AAACGTA--CATATTTTTATAC---GAT--T---ATATGT---AACACCGTGGGGtccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATATATA--CTC-------AAA----AT----AA-AAGCAAA---G---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCTAA-A-AA-G-G--AATTG-GAAGTGATTTTCTGAACTTTGC---TAA--GTTATAAC--TTGGCTTAAGAGAATTCTTAACAAATATTTTTTTAACA----AAAAC----A--------T---GAATT---T-C--------AAAATT---TGT-----T-----AAA--AAT----A--CTT------ACCCC----AAA-ATAGT-T--TT-CTAAT-ATATT----T--GT--GTAATAAAC-TGATTGTATA--------CA--GCCGATAA-AAGATATTTTATTAT-GTAAG-ATTTGAAA-ATAA------A-------T---------------AA-TG---GG---A-C-------C---A--GC-AG-TTC------AG--T-----------TCA-GCA----------G------TTTT------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-TG-TTG-AAGA---------A-CC--AT-----G--GTT-AAACCT---TAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTT--------------------T------TTTT------T-ATAAAAACAA---T-A-------ATTTTGAGGCAAAA-ACTCTTAT----T----T---TTT---AT-GTATGCGTTTATCTTTA-ATAATG--TAAA------TTA---AAAA---------TAAA--GTT-------TTA-GGGTT---AA-TAATG----TTTTT-GA-ATAGTGTAGC---------TATCAG-------T-----TTTGG--G--AAAGTAAAAGTGC-A---GCTC-CAA----ACTTGTT-CT-TAA-AAAC-Taataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CTAG-A-AA-A-GATAATTG-AAAATGG-------AACCTTGC--T--A--AT--TAAG--TTA-----ATC--ATTATT--CAAATTATTCTT----A----CAA------A--------T---A--TT---T-TT-------GAGA------------------AAAA--AAT-TGAA--TTTT--TA-A----------A-AT-----------T--T-GT--T----T--GAA---AA-AAATCTGATGTTAGA--------TG-------TAAGA-----------TTTAGCGGATATTTACAGCATA-CCTG--A-------TTTTTTAACACCAAA-AA-TGTATACA-TT-T-------T---A------T-TTT------GG----------------G-G------------A------TTTT------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-TG-TTGGGAAA---------A-CA--GT-----T--T-----GA-----TAGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAACTTTTCAA-----------GAAAGCTACAAAATTTT------G-A-----------------------------GGCAAAA-ATT----G----TAGTTT---TTT---AA-TTATGCGTTCGTTTTTA-ATAATG--TAAA------TTA---AAAA---------TATA--TTT-------TTTAGGTTT---AAGTATTG----TTTTT-GA-ATA-TATTGCTCATACTTGTATCAGCATT-C-T-----TTTGACAT--AAAGTACTGGAGC-A---GATC-CAA----ACTCATT-TT-TAA-AAAC-TA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatTTT----G----AAATCT---A------------A--TT---T-T--------AAAATT---TGT-----------AAA--AAT----A--TATT--TA-A--TCCG--GAA-ATAG--T--TTTCT--T-GTATT-------GGA-GTAATATAT-TTAT--TATA--------TG--GTCAGTAA-A-----------TAT-ACAAA-AAATGAAT-ATAAGCTG--ATGTTAGATGTA----------A-GACTGCA-TTA-TA-TGTGAAAAC---A--GC-ATATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TTTTGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-TG-TTGTAAAA---------A-CA--AT-----T--TTT-ACAATT---TAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAATTTTAAA-----------GAAAAATACAtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : ataaattctactggccaaactgttcggtggacaaactcataaaattgaacgaaaacgattgtttgaaccttgcA-TATTG----TTTTA-GA--TA-TGTTTTCAATACTTGTGGCAG---T-C-A-----TTTTGCAT--AAAGAATCAGAGC-AGGTGCTT-CGA----ACTTGTT-TT-TAA-AAAA-TA--TAtttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333 333333333333 8888888888888888888888888888888888888888888888 111 222222 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 2222222 11111111 11111111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111 333333 111111111111 11111 11111111111 111111 11111111111111 1111111111111111111111 111 1111111111111 222222222 222222222222 1111 111 22222222222 111 1 1 333333333
lowQualScore : 777777777777 9999 8888 4 4 333333333333 44 99999 55 8888888888888888888888888888888888888888888888 3 6 3 222 6 3 2 4 000000 55 55 00 11 3 55 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 1 11 44 0 44 3 4444444 3 1 3 0 88 55555555 777 3 55555555555 3 0 3 3 0 4 44 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44 3 333333333 99999 555 3 7777 000000 3 3 999999999999 2 3 2 777777777 22222 55555555555 0 3 444444 3 2 88888888888888 0 4 7777777777777777777777 111 4 77 0 44 1 0000000000000 222222222 55 999999999999 2 666 3 3 0 3 3 1 66 888888888 3 44 3 555 6 6666 2 3 3 3 3 999 8888 111 44444444444 444 0 1 1 5 1 1 666666666
lowQualScore : ............ .... .... . . ............ .. ..... .. .............................................. . . . ... . . . . ...... .. .. .. .. . .. . ............................................................................................................... . . .. .. . .. . ....... . . . . .. ........ ... . ........... . . . . . . .. ............................................................................................................................................................................ . . .. . ......... ..... ... . .... ...... . . ............ . . . ......... ..... ........... . . ...... . . .............. . . ...................... ... . .. . .. . ............. ......... .. ............ . ... . . . . . . .. ......... . .. . ... . .... . . . . . ... .... ... ........... ... . . . . . . .........
lowQualScore : 888888888888 4444 5555 0 0 222222222222 55 11111 00 1111111111111111111111111111111111111111111111 3 7 3 000 7 3 0 3 111111 00 00 00 22 6 00 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2 22 66 0 66 3 4444444 1 6 1 2 55 44444444 777 3 88888888888 3 5 3 3 5 5 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3 66 3 333333333 00000 111 3 5555 777777 6 6 111111111111 0 3 9 222222222 22222 88888888888 6 6 111111 6 1 99999999999999 5 0 2222222222222222222222 000 0 44 5 66 4 6666666666666 333333333 00 111111111111 0 444 3 3 2 1 1 0 22 555555555 8 66 1 444 2 5555 5 3 3 3 3 444 9999 777 11111111111 000 6 0 0 0 0 0 555555555
consensus : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AAAAATAT---A-A-------ATTTTAGGGCAAAA-AC---T----G----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAANTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AAAAATAT---A-A-------ATTTTAGGGCAAAA-AC---T----G----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
gi|1 : -ACTCC--TA--AAA----AT----AA-A-TTAAG---GTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-ATAGTA-AA-G-A-TAAATG-ACTATGGTTTTCTGAAC------------AAAGGT--TAAC--TTAGCTTTTGCAAATTCTT--TTCAAATAATTTTT----GA----AG------AAAAAACAGT---GAATT---T-T--------AAAAT------------T--TGT---T---AAAG--AATGC--A--TTTTCA-AGCT----AAATATAG--TATTT-CT--T-GT-TT----T--GGA-GTAACAAAT-TAAT--TATA--------TA--GTAAATAA-A-----------TAT-GCTAG-ATTAGAAA-ATAATCTG--A-------TG------------A-GA---TA-AAA-AA-T-------TAAGA--GG-AT-TTT------AACTA-----------GC--ATATCCA------A------TTTT------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtac-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-T--A-TTATGAAA---------AC---GTTT--T-TTACAATTAAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAAT----TTTTAAA-----------GAATAACA-AA-AATTTT--------AAAAATAC---A-T-------ATTTTTGGGTTAAA-ACTCTT----GT---T----T---TTT---AA-ATATGCACTCATTTTGATATAA-A--TAAACATCTATTG---GAAA---------TAAG--TTA-------CA--TGATTCTCAA-TGTTTTTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaTATATA-A-TCCAT----AAA----AT----AT-G-TTAAG---GACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CTAG-A-AA-ATG-TAATTG-AAAATGGTTTTCTTGACCTTG---T---TAG--GT--TGAC--TTAACTTTAGAGAATTCTT--TACAATTTTATTAT----GA----AAGAAGAAA--------TAAAG------------------AAAA--------------------------AAAA--AGG-C--A--TTTTTT-A-CCCG--AAA-ATAAAAT--TT-CT--T-GTATT-------GGA-TTAATAAGT-TAAT--TATAATTTTTATTGAAGTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------GGTA----------A-GA-TGTA-AGA-T--T-------A---A--GAGAT-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TTTT------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-T--A-CTGTGTAA---------ACATTGTTT--T-TTACAATTTATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAAC----TTTTAAA-----------GAAAAATTCA----TTTT------G-ACATATAT---A-C-------ATTTTAGGGCAAAA-AC---T----G----T----T------------ATA----TTCAT--------------------------------AA---------TATA--CTT-------------------AA-TA-TTGTTT-----------TTACCCATAACTGTAATGACATT-C-A-----TTTGGCAT--AAAGTATCAGTGC-A----CTCACAA----ACGTGTT-CT-TAA-AAAC-aattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|11 : TA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CCAG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC------TAA--GT--TCAA--TTAGATTAAGCGAATTCTT--TAACAATATTTTTT----TT----TT------A--------T---G--TTAGATGT--------AAGAT------------T--TGTGCAT---ACCT--GAT-T--T--TTTTCACA-CC----AAA-AT
gi|11 : aggatcataatt---------A------TTTT------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GAT--G-TTGTGAAA---------TC---AGTT--T-TTACAAATAAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAAC----TTTAAAA-----------GAAAAATACAA-AAAATT------G-AAAAATAT---ATATTTTTTTATTTTAGTACATACTGT---T----G----T----T---TTT---AATACATATGTTTATTTTGT-ATAATG--TAA------ATTA---TATA---------TATA--TTTATATGTTTT--TGTTT---AA-TA-TTGTTTTTGA-ATA-TATATCACATACTTTTTATAGCATT-T-T-----GTTGTCAT--CAAGTACCAGAAC-A---GCT-------------GTT-CC---A-AAAC-TA--CACA----Tgtagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagT----AA-G-TTGAG---G---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CCAGAA-AA-G-G-TAATTG-AAAACGGTTTTA-GAACCTTGC------CAA--GT--AAAC--TTAGCTGAAGCGAATTGTT--TAAAAA-ATTT--------A----AA----------------------TT---T-T--------A-------------------------T---AAAA--A------------------------AAA-ATAGT-T--TT-CT--T-GTA-T----T--GGG-GTAATAA-----AT--TATA--------TG--GTCAATAA-A-----------AGT-GC-AC-ATTTTAAA-ATAATATGGTG-------TGTT----------A-AA-TGTA-AGA-T--T-------T---AAGGA-AT-TTT------AA--A-----------ATA-ATAT---------ACCAGATTTTT------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : ATATCTATA--CTCCAC----AAA----AT----AA-G-TTAAG---G---G---aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|13 : taagttgaggaacataccacatataaattctactggactaaaattctaactgttctgtaaacatacccagaaaaggtaattgaaaacggttttagaaccttgccaagtaaacttagctgaagcgaattgtttaaaaaatttaaattttataaaaaaaaatagttttcttgtattggggtaataaattatatggtcaataaaagtgcacattttaaaataatatggtgtgttaaatgtaagatttaaggaattttaaaataatataccagatttttttcaaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggC-TTGG-A-AA-G-GGTAAATG-AAAACGGGATTTTGAACATGGC--T---GGA---T--CAACATTTTTCTTTAGAGAATTCTT--TACAAATATTCTTT---------------------------T---T--TT---T-TTTTTAAAAAAAAT------------TAATTT---T---AAAATTAAT-T-----TTCTTG-A-AA----AAA-ATAC--T--TT-TT--TTGTATT-------GGA-TTAATAAAT-TGTT--TATA--------TA--GTCAAGAA-A-----------TAT-GCAAA-ATATAAAA-A-----TG--A-------CATT---------------T-----------T-------T----------T-TTT------AA--A-----------A-----AA---------A----------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-T--G-TTATGAAA---------AC---AGT------------GTAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA-------------------------AAAAACAC-----TTTTC-----G-AAAAATAT---A-A-------ATTTTGGAGCAcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatatataaatc----GA----AA----------------------TT---T-T--------AGAAT------------T--TGT---T---AAAA--ACG-C--C--TTTTTA-T-CTT---AAA-AAAG--T--TTTCT--T-GTATT----T--G-A-CTTTTAAAA-AGAT--TATATA------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------AGGA-TTT--AGA-TA-------------------AT-TTA------AA--A-----------AC
gi|14 : ---------A------TTTT------TAAAAATCGGAAAAC--------G-GTCT-----A--A---TTCAACAG-----G-G-T--A-TTTTGAAA---------AC---AGTT--T-TTAaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|15 : gaaattttagaatttgttaaaaacgcctttttatcttaaaaaagttttcttgtatttgacttttaaaaagattatatatggtcaataaatatgcaaaatttgaaaataatctgatgttaggatttagataatttaaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaATTTTTA-ATAAAG--CAA------ATTTTGAGGAA---------TGTA--TTT-------TTTTAGGTT---GA-GG---ATTTTTAATATA-TATTGCCCATGGTTGTAATAGCATT-CAT-----TTT-------------TCGGAGTAA---GCTC-CAA----ACCTGTT-TT-TAA-ATCC-TA--AAC------ATAC---CATTTT---A-ATGT---AACATCt
gi|16 : T----T--GGA-GTAATAAAT-TGAT--TATA--------CT--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ACAATCTG--A-------TAT-------------------A-AGA-T--T-------T---A--GG-A--------------------------------------------A------TTTT------T---------AAAA--------------C-----A--G---TTTATT-C-----G-A-T--T-TTGTCACA---------CC---AGAA--T-GTA---TCTATTT--TA-TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-----TATCAAA-----------Gtaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|17 : TTTTGA-TTA-TATTGCCCATACTTTTATTAGCATT-C-T-----CTTGGCAT--AAAGTATC--AGC-A---GTTC-CAA----ACAT-TT-TA-TAAGAAAC-TG--TAGA----GATACGATCA---T---A-ATGT---AACATCTTATAG
gi|18 : tttaTATGTATA-----CAC------A----AT----AA-A-ATAAG-----------TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CTAG-A-AA-ATG-TAATTG-AAAACGGTTTTgaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatatTAACG--TAA------AG-A---AAAA---------TATA----------------AGGTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCTATAATTGTATAAGGTTT-C-TGTTACTTT--C-T--AAAGTATCAGAGC-A---GCTC-CAA----AC
gi|2 : ATATA-A-TACTCCA--AAA----AT----AA-A-TTAAG---G---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CTAG-A-AAAG-G-TAATTG-AATACGGTTTTCTGAACCTT--------CAA-------AAC--TTAGCTTTAGCAAATTGTT--TA-AAACAAGTTTT----GAGAAAAA------A--------T---GAGTT---T-T--------GAAATGAAATCTAACAAT--TGA---A---AAAA--AAG-C--A--TTTTTA-A-T---------------T--TT-CT--T-CTATT-------GGA-GTAATAACT-TGAC--TATT--------TG-----------------------TAT-----A-ACTTGAAA-AAAAATTA--A-------TATA----------A-CA-TGTA-AGACTG-A-------G---A--GG-CT-ATT------AA--A-----------ACA-GCATTCCA-----G------TTTT------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-A--GATTTTGAAAAATCGGAGGAT---GGTCCAT-TT-CAACTAAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAG----TCTTAAAATGATACAAATGAAAACTACAA-AATTTT------G--AAAATAC---A-A-------ATTTTAGGGCAAAA-AC---T----A----T----T---TTTA--AA-ATATGCGTTTGTTTTT---TAATG--TAA------ATTT---AAAAAAAATACAGTATA--TAT-------TT--GGGCC---AG-TT-TTGCTTTTAA-ACA-TAGTGCCCATATGTGTGATAGCATT-C-T-----TTTATAATAAAAAATATAAGAGC-A---GCTC-TAA----AC-TGTT-TT-T-G-AAAC-TA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAA-AATTTT------G-AAAAACAT---A-A-------ATTTTAGGGCAAAT-TC---T----G----T----TA--TTTTTAAA-AAATGCGTTTATTTTTA-ATAATGTATAA------ATTagcgtatattattctaggatt
gi|3 : C-A---GCTTTCAAGCTTACTTGCTGTT-TAA-CAGC-T-----CA----TATTC---CA---C---A--TGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcataatgcacatttttgtttttattttattttattttatttcaaagatatatttatataatcaagtttataatttgtctCATGAACATA-ACTCCACCA--AAA----AT----AA-A-TTGAG---GCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TCAG-A-AA-G-G-TATTTG-AAAACGTTTTTTTGAACTTTGCCAT---TGA--GT--TAAC--TTGGCTTTTGCAAATTCTT--AAAAAATATATTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---TTTTAAAA--TAT-C--A--TTTTTA-A-CC----GAA-AT-G--T--GT-CC--T-GTATTAGAATAAGGA-GTAATCATT-TGAT--TATA--------TG--GTCAATAA-A-----------TGT-GTAAA-ATTTGAAA-ATAATCTG--A-------AGTT----------G-GA-TGTA-TGA-TAAT-------T---A--GC-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-T--G-TTGTGAAA---------AT---CTTT--T-TTACAAATTAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAAC----TTTTGAA-----------GAGAAAAACAA-AATTTT------GTAAAAATAT---A-A-------ATTTTATGGCAAAA-AA---A----G----T----T---TTT---AA-ATATGTGTTTATTTTTT-ATTTTG--TTA------ATTC---AATA---------TATA--TTT-------GG--GGTTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCCATATTTGTTAAAGCATT-G-T-----TTTTGCAT--AAAGTACCAGAAA-A---GCTC-CAA----ACTTGGT-TT-TAA-AAAA-TA--AACA----TATAC---CA---TGGGA-A-GT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : TATATA----CTATTA--AAATGTTAT----AATA-T-------G---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CTAG-A-AAAG-G-TAATTG-AAAATGGTTTT---AGCATTGC--T---TAA--GA--TAAC--TTCGCTTA---GAGTTATG--TACAAATATTTTTT----AA----AACAAA--A--------T---GAATT---T-T--------AAAAT------------T--TGC---T---AAAA--CAG-T--A--TTTTAA-A-CCGA--AAA-ATAG--T--TTTCT--T-ATATT-------GGA-GTAGTAAAT-TCGT--CAT---------TG---TCAATTA-A-----------TAT-GTAAT-ATTT----------TTG--A---------------------A-GA-T----AAA-TG-T-------T---G--GA----TTT------AA----------------G-ATAT---------A-------------------------GA------------G-GTCG-----A--G---CT--A--T-----G-A-AAAG-CTGT--AT---------AC---GTTT--TATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAA----TTTTAAA-----------TAAAAATACCA-AATTTTCCCCCAA-AAAAACATTAGG-A-------ATGTTAA---AAAA-AC---T----G----T----TACTTTT---AA-ATGTGCATTTAGTTTTG-ATAATA--TTA--------TT---AAAA---------TGTAAGTTT-------TC--AGGTT---AC-TA-TTGCTTTTGA-ATA-TATTGTCCATACCTGTATTAGCATT-T-T-----TTTGGCAT--ATAGTATCAGCAT-A---GCTC-CAA----TCTTGTT-TT-TAA-AAAC-TATGCACACTAGTATAC---TA---T---aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatattttCATACACATATACTACACCAGTACA----ATCCACAA-A-CTAAGTTAG---G----ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CTAG-TTAA-G-G-TAATTG-AAAACAGTTTTCTGAATC-TGC--T---T-A--GT--TAAC--TAAGCATAAGATAAATCTT--TACAAATACTTTTT----GT----AA------A----------------T---T-T--------AAAAT------------T--TGT---T---AAAA--AG--C--ATTTTTTTA-C-CCAAAAAAA-AAAG--T--TT-TT--T-GTATT--------GATGTCATA------AT--TATG--------TG--CTCttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataTAAATTTT-AAATTGATGA----A----TAGGATT----TTTTAAA-----------TAAAAAAACAC-AAATTT------G-TAAAATAA---A-A-------ATTTTGGGGCAAAA-GC---T----GTTATT----T---CTT---GA-ATATGCCTTTATTCTTA-ATAAT---T-A------GTTT---AAAACCCT-----TAT---TTC-------TT--GAATT---GA-TA-TTATTTTTCA-ATA-TATTACTTATCCTTGCTTAAGCATTAT-T-----TTTGGCAT--AACGTATCAGAGC-A---GTTC-AAA----GTTTGTT-TTAAAA-AAACGTA--CATATTTTTATAC---GAT--T---ATATGT---AACACCGTGGGGtccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATATATA--CTC-------AAA----AT----AA-AAGCAAA---G---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCTAA-A-AA-G-G--AATTG-GAAGTGATTTTCTGAACTTTGC------TAA--GTTATAAC--TTGGCTTAAGAGAATTCTT--AACAAATATTTTTTTAACAA----AAAC----A--------T---GAATT---T-C--------AAAAT------------T--TGT---T---AAAA---------A--TACTTACC-CC----AAA-ATAGT-T--TT-CTAAT-ATATT----T--GT--GTAATAAAC-TGATTGTATA--------CA--GCCGATAA-AAGATATTTTATTAT-GTAAG-ATTTGAAA-ATAA------A-------T---------------AA-TG---GG---A-C-------C---A--GC-AG-TTC------AG--T-----------TCA-GCA----------G------TTTT------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-T--G-TTG-AAGA---------AC---CATG--G-TTAAACCTTAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTTTTTTTTA-----------TAAAA--ACAATAATTTT------G-A---------------------------GGCAAAA-AC---TCTTAT----T----T---TTT---AT-GTATGCGTTTATCTTTA-ATAATG--TAA------ATTA---AAAA---------TAAA--GTT-------TTA-GGGTT---AA-TA-ATGTTTTTGA-ATAGTGTAGC---------TATCAG-------T-----TTTGG--G--AAAGTAAAAGTGC-A---GCTC-CAA----ACTTGTT-CT-TAA-AAAC-Taataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CTAG-A-AA-A-GATAATTG-AAAATGG-------AACCTTGC--TAATTAA--GT--TAATCATTA--TTCA---AATTATTCTTACAAATATTTT-T----GA----GA--------------------------------------------------------------------AAAA--AAT-TGAA--TTTTTA-A---------A-AT-----------T--T-GT--T----T--GAA---AA-AAATCTGATGTTAGA--------TG-------TAAGA-----------TTTAGCGGATATTTACAGCATA-CCTG--A-------TTTTTTAACACCAAA-AA-TGTATACA-TT-T-------T---A------T-TTT------GG----------------G-G------------A------TTTT------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-T--G-TTGGGAAA---------AC---AGTT--T-----GA--TAGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAAC----TTTTCAA-----------GAAAGCTACAA-AATTTT------G-A---------------------------GGCAAAA-AT---T----G----TAGTTT---TTT---AA-TTATGCGTTCGTTTTTA-ATAATG--TAA------ATTA---AAAA---------TATA--TTT-------TTTAGGTTT---AAGTA-TTGTTTTTGA-ATA-TATTGCTCATACTTGTATCAGCATT-C-T-----TTTGACAT--AAAGTACTGGAGC-A---GATC-CAA----ACTCATT-TT-TAA-AAAC-TA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatTTT----GA----AATCT---A------------A--TT---T-T--------AAAAT------------T--TGT--------AAA--AAT----A--TATTTA-A-TCCG--GAA-ATAG--T--TTTCT--T-GTATT-------GGA-GTAATATAT-TTAT--TATA--------TG--GTCAGTAA-A-----------TAT-ACAAA-AAATGAAT-ATAAGCTG--ATGTTAGATGTA----------A-GACTGCA-TTA-TA-TGTGAAAAC---A--GC-ATATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TTTTGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-T--G-TTGTAAAA---------AC---AATT--T-TTACAATTTAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAA----TTTTAAA-----------GAAAAATACAtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : ataaattctactggccaaactgttcggtggacaaactcataaaattgaacgaaaacgattgtttgaaccttgcA-TA-TTGTTTTAGA--TA-TGTTTTCAATACTTGTG---GCAGT-C-A-----TTTTGCAT--AAAGAATCAGAGC-AGGTGCTT-CGA----ACTTGTT-TT-TAA-AAAA-TA--TAtttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333 333333333333 8888888888888888888888888888888888888888888888 111 222222 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 2222222 11111111 11111111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111 333333 111111111111 11111 11111111111 111111111111 11111111111111 1111111111111 111 1111111111111 222222222 222222222222 1111 111 22222222222 111 1 1 333333333
lowQualScore : 777777777777 9999 8888 4 4 333333333333 44 99999 55 8888888888888888888888888888888888888888888888 3 6 3 222 6 3 2 4 000000 55 55 00 11 3 55 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 1 11 44 0 44 3 4444444 3 1 3 0 88 55555555 777 3 55555555555 3 0 3 3 0 4 44 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44 3 333333333 999999999 3 3 0 000000 3 3 999999999999 2 3 2 777777777 22222 55555555555 0 3 555555555555 0 44444444444444 11 888888 4444444444444 111 4 77 0 44 1 0000000000000 222222222 55 999999999999 2 666 3 3 0 3 3 1 66 888888888 3 44 3 555 6 6666 2 3 3 3 3 999 8888 111 44444444444 444 0 1 1 5 1 1 666666666
lowQualScore : ............ .... .... . . ............ .. ..... .. .............................................. . . . ... . . . . ...... .. .. .. .. . .. . ............................................................................................................... . . .. .. . .. . ....... . . . . .. ........ ... . ........... . . . . . . .. ............................................................................................................................................................................ . . .. . ......... ......... . . . ...... . . ............ . . . ......... ..... ........... . . ............ . .............. .. ...... ............. ... . .. . .. . ............. ......... .. ............ . ... . . . . . . .. ......... . .. . ... . .... . . . . . ... .... ... ........... ... . . . . . . .........
lowQualScore : 888888888888 4444 5555 0 0 222222222222 55 11111 00 1111111111111111111111111111111111111111111111 3 7 3 000 7 3 0 3 111111 00 00 00 22 6 00 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2 22 66 0 66 3 4444444 1 6 1 2 55 44444444 777 3 88888888888 3 5 3 3 5 5 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3 66 3 333333333 222222222 3 6 3 777777 6 6 111111111111 0 3 9 222222222 22222 88888888888 6 6 555555555555 4 55555555555555 11 222222 0000000000000 000 0 44 5 66 4 6666666666666 333333333 00 111111111111 0 444 3 3 2 1 1 0 22 555555555 8 66 1 444 2 5555 5 3 3 3 3 444 9999 777 11111111111 000 6 0 0 0 0 0 555555555
consensus : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
gi|1 : -ACTCC--TA--AAA----AT----AA-A-TTAAG---GTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-ATAGTA-AA-G-A-TAAATG-ACTATGGTTTTCTGAAC------------AAAGGT--TAAC--TTAGCTTTTGCAAATTCTT--TTCAAATAATTTTT----GA----AG------AAAAAACAGT---GAATT---T-T--------AAAAT------------T--TGT---T---AAAG--AATGC--A--TTTTCA-AGCT----AAATATAG--TATTT-CT--T-GT-TT----T--GGA-GTAACAAAT-TAAT--TATA--------TA--GTAAATAA-A-----------TAT-GCTAG-ATTAGAAA-ATAATCTG--A-------TG------------A-GA---TA-AAA-AA-T-------TAAGA--GG-AT-TTT------AACTA-----------GC--ATATCCA------A------TTTT------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtac-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-T--A-TTATGAAA---------AC---GTTT--T-TTACAATTAAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAAT----TTTTAAA-----------GAATAACA-AA-AATTTT--------AA--AAATAC---A-T-------ATTTTTGGGTTAAA-ACTCTTGT---T----T---TTT---AA-ATATGCACTCATTTTGATATAA-A--TAAACATCTATTG---GAAA---------TAAG--TTA-------CA--TGATTCTCAA-TGTTTTTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaTATATA-A-TCCAT----AAA----AT----AT-G-TTAAG---GACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CTAG-A-AA-ATG-TAATTG-AAAATGGTTTTCTTGACCTTG---T---TAG--GT--TGAC--TTAACTTTAGAGAATTCTT--TACAATTTTATTAT----GA----AAGAAGAAA--------TAAAG------------------AAAA--------------------------AAAA--AGG-C--A--TTTTTT-A-CCCG--AAA-ATAAAAT--TT-CT--T-GTATT-------GGA-TTAATAAGT-TAAT--TATAATTTTTATTGAAGTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------GGTA----------A-GA-TGTA-AGA-T--T-------A---A--GAGAT-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TTTT------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-T--A-CTGTGTAA---------ACATTGTTT--T-TTACAATTTATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAAC----TTTTAAA-----------GAAAAATTCA----TTTT------G-AC--ATATAT---A-C-------ATTTTAGGGCAAAA-AC---TG----T----T------------ATA----TTCAT--------------------------------AA---------TATA--CTT-------------------AA-TA-TTGTTT-----------TTACCCATAACTGTAATGACATT-C-A-----TTTGGCAT--AAAGTATCAGTGC-A----CTCACAA----ACGTGTT-CT-TAA-AAAC-aattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|11 : TA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CCAG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC------TAA--GT--TCAA--TTAGATTAAGCGAATTCTT--TAACAATATTTTTT----TT----TT------A--------T---G--TTAGATGT--------AAGAT------------T--TGTGCAT---ACCT--GAT-T--T--TTTTCACA-CC----AAA-AT
gi|11 : aggatcataatt---------A------TTTT------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GAT--G-TTGTGAAA---------TC---AGTT--T-TTACAAATAAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAAC----TTTAAAA-----------GAAAAATACAA-AAAATT------G-AA--AAATAT---ATATTTTTTTATTTTAGTACATACTGT---TG----T----T---TTT---AATACATATGTTTATTTTGT-ATAATG--TAA------ATTA---TATA---------TATA--TTTATATGTTTT--TGTTT---AA-TA-TTGTTTTTGA-ATA-TATATCACATACTTTTTATAGCATT-T-T-----GTTGTCAT--CAAGTACCAGAAC-A---GCT-------------GTT-CC---A-AAAC-TA--CACA----Tgtagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagT----AA-G-TTGAG---G---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CCAGAA-AA-G-G-TAATTG-AAAACGGTTTTA-GAACCTTGC------CAA--GT--AAAC--TTAGCTGAAGCGAATTGTT--TAAAAA-ATTT--------A----AA----------------------TT---T-T--------A-------------------------T---AAAA--A------------------------AAA-ATAGT-T--TT-CT--T-GTA-T----T--GGG-GTAATAA-----AT--TATA--------TG--GTCAATAA-A-----------AGT-GC-AC-ATTTTAAA-ATAATATGGTG-------TGTT----------A-AA-TGTA-AGA-T--T-------T---AAGGA-AT-TTT------AA--A-----------ATA-ATAT---------ACCAGATTTTT------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : ATATCTATA--CTCCAC----AAA----AT----AA-G-TTAAG---G---G---aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|13 : taagttgaggaacataccacatataaattctactggactaaaattctaactgttctgtaaacatacccagaaaaggtaattgaaaacggttttagaaccttgccaagtaaacttagctgaagcgaattgtttaaaaaatttaaattttataaaaaaaaatagttttcttgtattggggtaataaattatatggtcaataaaagtgcacattttaaaataatatggtgtgttaaatgtaagatttaaggaattttaaaataatataccagatttttttcaaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggC-TTGG-A-AA-G-GGTAAATG-AAAACGGGATTTTGAACATGGC--T---GGA---T--CAACATTTTTCTTTAGAGAATTCTT--TACAAATATTCTTT---------------------------T---T--TT---T-TTTTTAAAAAAAAT------------TAATTT---T---AAAATTAAT-T-----TTCTTG-A-AA----AAA-ATAC--T--TT-TT--TTGTATT-------GGA-TTAATAAAT-TGTT--TATA--------TA--GTCAAGAA-A-----------TAT-GCAAA-ATATAAAA-A-----TG--A-------CATT---------------T-----------T-------T----------T-TTT------AA--A-----------A-----AA---------A----------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-T--G-TTATGAAA---------AC---AG------------TGTAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA-------------------------AAAAACAC-----TTTTC-----G-AA--AAATAT---A-A-------ATTTTGGAGCAcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatatataaatc----GA----AA----------------------TT---T-T--------AGAAT------------T--TGT---T---AAAA--ACG-C--C--TTTTTA-T-CTT---AAA-AAAG--T--TTTCT--T-GTATT----T--G-A-CTTTTAAAA-AGAT--TATATA------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------AGGA-TTT--AGA-TA-------------------AT-TTA------AA--A-----------AC
gi|14 : ---------A------TTTT------TAAAAATCGGAAAAC--------G-GTCT-----A--A---TTCAACAG-----G-G-T--A-TTTTGAAA---------AC---AGTT--T-TTAaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|15 : gaaattttagaatttgttaaaaacgcctttttatcttaaaaaagttttcttgtatttgacttttaaaaagattatatatggtcaataaatatgcaaaatttgaaaataatctgatgttaggatttagataatttaaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaATTTTTA-ATAAAG--CAA------ATTTTGAGGAA---------TGTA--TTT-------TTTTAGGTT---GA-GG---ATTTTTAATATA-TATTGCCCATGGTTGTAATAGCATT-CAT-----TTT-------------TCGGAGTAA---GCTC-CAA----ACCTGTT-TT-TAA-ATCC-TA--AAC------ATAC---CATTTT---A-ATGT---AACATCt
gi|16 : T----T--GGA-GTAATAAAT-TGAT--TATA--------CT--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ACAATCTG--A-------TAT-------------------A-AGA-T--T-------T---A--GG-A--------------------------------------------A------TTTT------T---------AAAA--------------C-----A--G---TTTATT-C-----G-A-T--T-TTGTCACA---------CC---AGAA--T-GTA---TCTATTT--TA-TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-----TATCAAA-----------Gtaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|17 : TTTTGA-TTA-TATTGCCCATACTTTTATTAGCATT-C-T-----CTTGGCAT--AAAGTATC--AGC-A---GTTC-CAA----ACAT-TT-TA-TAAGAAAC-TG--TAGA----GATACGATCA---T---A-ATGT---AACATCTTATAG
gi|18 : tttaTATGTATA-----CAC------A----AT----AA-A-ATAAG-----------TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CTAG-A-AA-ATG-TAATTG-AAAACGGTTTTgaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatatTAACG--TAA------AG-A---AAAA---------TATA----------------AGGTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCTATAATTGTATAAGGTTT-C-TGTTACTTT--C-T--AAAGTATCAGAGC-A---GCTC-CAA----AC
gi|2 : ATATA-A-TACTCCA--AAA----AT----AA-A-TTAAG---G---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CTAG-A-AAAG-G-TAATTG-AATACGGTTTTCTGAACCTT--------CAA-------AAC--TTAGCTTTAGCAAATTGTT--TA-AAACAAGTTTT----GAGAAAAA------A--------T---GAGTT---T-T--------GAAATGAAATCTAACAAT--TGA---A---AAAA--AAG-C--A--TTTTTA-A-T---------------T--TT-CT--T-CTATT-------GGA-GTAATAACT-TGAC--TATT--------TG-----------------------TAT-----A-ACTTGAAA-AAAAATTA--A-------TATA----------A-CA-TGTA-AGACTG-A-------G---A--GG-CT-ATT------AA--A-----------ACA-GCATTCCA-----G------TTTT------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-A--GATTTTGAAAAATCGGAGGAT---GGTCCAT-TT-CAACTAAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAG----TCTTAAAATGATACAAATGAAAACTACAA-AATTTT------G--A--AAATAC---A-A-------ATTTTAGGGCAAAA-AC---TA----T----T---TTTA--AA-ATATGCGTTTGTTTTT---TAATG--TAA------ATTT---AAAAAAAATACAGTATA--TAT-------TT--GGGCC---AG-TT-TTGCTTTTAA-ACA-TAGTGCCCATATGTGTGATAGCATT-C-T-----TTTATAATAAAAAATATAAGAGC-A---GCTC-TAA----AC-TGTT-TT-T-G-AAAC-TA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAA-AATTTT------G-AA--AAACAT---A-A-------ATTTTAGGGCAAAT-TC---TG----T----TA--TTTTTAAA-AAATGCGTTTATTTTTA-ATAATGTATAA------ATTagcgtatattattctaggatt
gi|3 : C-A---GCTTTCAAGCTTACTTGCTGTT-TAA-CAGC-T-----CA----TATTC---CA---C---A--TGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcataatgcacatttttgtttttattttattttattttatttcaaagatatatttatataatcaagtttataatttgtctCATGAACATA-ACTCCACCA--AAA----AT----AA-A-TTGAG---GCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TCAG-A-AA-G-G-TATTTG-AAAACGTTTTTTTGAACTTTGCCAT---TGA--GT--TAAC--TTGGCTTTTGCAAATTCTT--AAAAAATATATTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---TTTTAAAA--TAT-C--A--TTTTTA-A-CC----GAA-AT-G--T--GT-CC--T-GTATTAGAATAAGGA-GTAATCATT-TGAT--TATA--------TG--GTCAATAA-A-----------TGT-GTAAA-ATTTGAAA-ATAATCTG--A-------AGTT----------G-GA-TGTA-TGA-TAAT-------T---A--GC-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-T--G-TTGTGAAA---------AT---CTTT--T-TTACAAATTAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAAC----TTTTGAA-----------GAGAAAAACAA-AATTTT------GTAA--AAATAT---A-A-------ATTTTATGGCAAAA-AA---AG----T----T---TTT---AA-ATATGTGTTTATTTTTT-ATTTTG--TTA------ATTC---AATA---------TATA--TTT-------GG--GGTTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCCATATTTGTTAAAGCATT-G-T-----TTTTGCAT--AAAGTACCAGAAA-A---GCTC-CAA----ACTTGGT-TT-TAA-AAAA-TA--AACA----TATAC---CA---TGGGA-A-GT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : TATATA----CTATTA--AAATGTTAT----AATA-T-------G---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CTAG-A-AAAG-G-TAATTG-AAAATGGTTTT---AGCATTGC--T---TAA--GA--TAAC--TTCGCTTA---GAGTTATG--TACAAATATTTTTT----AA----AACAAA--A--------T---GAATT---T-T--------AAAAT------------T--TGC---T---AAAA--CAG-T--A--TTTTAA-A-CCGA--AAA-ATAG--T--TTTCT--T-ATATT-------GGA-GTAGTAAAT-TCGT--CAT---------TG---TCAATTA-A-----------TAT-GTAAT-ATTT----------TTG--A---------------------A-GA-T----AAA-TG-T-------T---G--GA----TTT------AA----------------G-ATAT---------A-------------------------GA------------G-GTCG-----A--G---CT--A--T-----G-A-AAAG-CTGT--AT---------AC---GTTT--TATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAA----TTTTAAA-----------TAAAAATACCA-AATTTTCCCCCAA-AA--AAACATTAGG-A-------ATGTTAA---AAAA-AC---TG----T----TACTTTT---AA-ATGTGCATTTAGTTTTG-ATAATA--TTA--------TT---AAAA---------TGTAAGTTT-------TC--AGGTT---AC-TA-TTGCTTTTGA-ATA-TATTGTCCATACCTGTATTAGCATT-T-T-----TTTGGCAT--ATAGTATCAGCAT-A---GCTC-CAA----TCTTGTT-TT-TAA-AAAC-TATGCACACTAGTATAC---TA---T---aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatattttCATACACATATACTACACCAGTACA----ATCCACAA-A-CTAAGTTAG---G----ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CTAG-TTAA-G-G-TAATTG-AAAACAGTTTTCTGAATC-TGC--T---T-A--GT--TAAC--TAAGCATAAGATAAATCTT--TACAAATACTTTTT----GT----AA------A----------------T---T-T--------AAAAT------------T--TGT---T---AAAA--AG--C--ATTTTTTTA-C-CCAAAAAAA-AAAG--T--TT-TT--T-GTATT--------GATGTCATA------AT--TATG--------TG--CTCttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataTAAATTTT-AAATTGATGA----A----TAGGATT----TTTTAAA-----------TAAAAAAACAC-AAATTT------G-TA--AAATAA---A-A-------ATTTTGGGGCAAAA-GC---TGTTATT----T---CTT---GA-ATATGCCTTTATTCTTA-ATAAT---T-A------GTTT---AAAACCCT-----TAT---TTC-------TT--GAATT---GA-TA-TTATTTTTCA-ATA-TATTACTTATCCTTGCTTAAGCATTAT-T-----TTTGGCAT--AACGTATCAGAGC-A---GTTC-AAA----GTTTGTT-TTAAAA-AAACGTA--CATATTTTTATAC---GAT--T---ATATGT---AACACCGTGGGGtccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATATATA--CTC-------AAA----AT----AA-AAGCAAA---G---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCTAA-A-AA-G-G--AATTG-GAAGTGATTTTCTGAACTTTGC------TAA--GTTATAAC--TTGGCTTAAGAGAATTCTT--AACAAATATTTTTTTAACAA----AAAC----A--------T---GAATT---T-C--------AAAAT------------T--TGT---T---AAAA---------A--TACTTACC-CC----AAA-ATAGT-T--TT-CTAAT-ATATT----T--GT--GTAATAAAC-TGATTGTATA--------CA--GCCGATAA-AAGATATTTTATTAT-GTAAG-ATTTGAAA-ATAA------A-------T---------------AA-TG---GG---A-C-------C---A--GC-AG-TTC------AG--T-----------TCA-GCA----------G------TTTT------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-T--G-TTG-AAGA---------AC---CATG--G-TTAAACCTTAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTTTTTTTTA-----------TAAAA--ACAATAATTTT------G-AGGCAAA------A-A-------CTCTTA--------------T-----T----T---TTT---AT-GTATGCGTTTATCTTTA-ATAATG--TAA------ATTA---AAAA---------TAAA--GTT-------TTA-GGGTT---AA-TA-ATGTTTTTGA-ATAGTGTAGC---------TATCAG-------T-----TTTGG--G--AAAGTAAAAGTGC-A---GCTC-CAA----ACTTGTT-CT-TAA-AAAC-Taataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CTAG-A-AA-A-GATAATTG-AAAATGG-------AACCTTGC--TAATTAA--GT--TAATCATTA--TTCA---AATTATTCTTACAAATATTTT-T----GA----GA--------------------------------------------------------------------AAAA--AAT-TGAA--TTTTTA-A---------A-AT-----------T--T-GT--T----T--GAA---AA-AAATCTGATGTTAGA--------TG-------TAAGA-----------TTTAGCGGATATTTACAGCATA-CCTG--A-------TTTTTTAACACCAAA-AA-TGTATACA-TT-T-------T---A------T-TTT------GG----------------G-G------------A------TTTT------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-T--G-TTGGGAAA---------AC---AGTT--T-----GAT--AGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAAC----TTTTCAA-----------GAAAGCTACAA-AATTTT------G-A-----------------------------GGCAAAA-AT---TG----TAGTTT---TTT---AA-TTATGCGTTCGTTTTTA-ATAATG--TAA------ATTA---AAAA---------TATA--TTT-------TTTAGGTTT---AAGTA-TTGTTTTTGA-ATA-TATTGCTCATACTTGTATCAGCATT-C-T-----TTTGACAT--AAAGTACTGGAGC-A---GATC-CAA----ACTCATT-TT-TAA-AAAC-TA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatTTT----GA----AATCT---A------------A--TT---T-T--------AAAAT------------T--TGT--------AAA--AAT----A--TATTTA-A-TCCG--GAA-ATAG--T--TTTCT--T-GTATT-------GGA-GTAATATAT-TTAT--TATA--------TG--GTCAGTAA-A-----------TAT-ACAAA-AAATGAAT-ATAAGCTG--ATGTTAGATGTA----------A-GACTGCA-TTA-TA-TGTGAAAAC---A--GC-ATATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TTTTGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-T--G-TTGTAAAA---------AC---AATT--T-TTACAATTTAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAA----TTTTAAA-----------GAAAAATACAtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : ataaattctactggccaaactgttcggtggacaaactcataaaattgaacgaaaacgattgtttgaaccttgcA-TA-TTGTTTTAGA--TA-TGTTTTCAATACTTGTG---GCAGT-C-A-----TTTTGCAT--AAAGAATCAGAGC-AGGTGCTT-CGA----ACTTGTT-TT-TAA-AAAA-TA--TAtttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333 333333333333 8888888888888888888888888888888888888888888888 111 222222 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 2222222 11111111 11111111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111 333333 111111111111 11111 11111111111 111111111111 11111111111111 1111111111111 111 1111111111111 222222222 222222222222 1111 111 22222222222 111 1 1 333333333
lowQualScore : 777777777777 9999 8888 4 4 333333333333 44 99999 55 8888888888888888888888888888888888888888888888 3 6 3 222 6 3 2 4 000000 55 55 00 11 3 55 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 1 11 44 0 44 3 4444444 3 1 3 0 88 55555555 777 3 55555555555 3 0 3 3 0 4 44 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44 3 333333333 999999999 3 3 0 000000 3 3 999999999999 2 3 2 777777777 22222 55555555555 0 3 555555555555 0 44444444444444 11 888888 4444444444444 111 4 77 0 44 1 0000000000000 222222222 55 999999999999 2 666 3 3 0 3 3 1 66 888888888 3 44 3 555 6 6666 2 3 3 3 3 999 8888 111 44444444444 444 0 1 1 5 1 1 666666666
lowQualScore : ............ .... .... . . ............ .. ..... .. .............................................. . . . ... . . . . ...... .. .. .. .. . .. . ............................................................................................................... . . .. .. . .. . ....... . . . . .. ........ ... . ........... . . . . . . .. ............................................................................................................................................................................ . . .. . ......... ......... . . . ...... . . ............ . . . ......... ..... ........... . . ............ . .............. .. ...... ............. ... . .. . .. . ............. ......... .. ............ . ... . . . . . . .. ......... . .. . ... . .... . . . . . ... .... ... ........... ... . . . . . . .........
lowQualScore : 888888888888 4444 5555 0 0 222222222222 55 11111 00 1111111111111111111111111111111111111111111111 3 7 3 000 7 3 0 3 111111 00 00 00 22 6 00 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2 22 66 0 66 3 4444444 1 6 1 2 55 44444444 777 3 88888888888 3 5 3 3 5 5 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3 66 3 333333333 222222222 3 6 3 777777 6 6 111111111111 0 3 9 222222222 22222 88888888888 6 6 555555555555 4 55555555555555 11 222222 0000000000000 000 0 44 5 66 4 6666666666666 333333333 00 111111111111 0 444 3 3 2 1 1 0 22 555555555 8 66 1 444 2 5555 5 3 3 3 3 444 9999 777 11111111111 000 6 0 0 0 0 0 555555555
consensus : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
gi|1 : -ACTCC--TA--AAA----AT----AA-A-TTAAG---GTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-ATAGTA-AA-G-A-TAAATG-ACTATGGTTTTCTGAAC------------AAAGGT--TAAC--TTAGCTTTTGCAAATTCTT--TTCAAATAATTTTT----GA----AG------AAAAAACAGT---GAATT---T-T--------AAAAT------------T--TGT---T---AAAG--AATGC--A--TTTTCA-AGCT----AAATATAG--TATTT-CT--T-GT-TT----T--GGA-GTAACAAAT-TAAT--TATA--------TA--GTAAATAA-A-----------TAT-GCTAG-ATTAGAAA-ATAATCTG--A-------TG------------A-GA---TA-AAA-AA-T-------TAAGA--GG-AT-TTT------AACTA-----------GC--ATATCCA------A------TTTT------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtac-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-T--A-TTATGAAA---------AC---GTTT--T-TTACAATTAAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAAT----TTTTAAA-----------GAATAACA-AA-AATTTT--------AA--AAATAC---A-T-------ATTTTTGGGTTAAA-ACTCTTGT---T----T---TTT---AA-ATATGCACTCATTTTGATATAA-A--TAAACATCTATTG---GAAA---------TAAG--TTA-------CA--TGATTCTCAA-TGTTTTTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaTATATA-A-TCCAT----AAA----AT----AT-G-TTAAG---GACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CTAG-A-AA-ATG-TAATTG-AAAATGGTTTTCTTGACCTTG---T---TAG--GT--TGAC--TTAACTTTAGAGAATTCTT--TACAATTTTATTAT----GA----AAGAAGAAA--------TAAAG------------------AAAA--------------------------AAAA--AGG-C--A--TTTTTT-A-CCCG--AAA-ATAAAAT--TT-CT--T-GTATT-------GGA-TTAATAAGT-TAAT--TATAATTTTTATTGAAGTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------GGTA----------A-GA-TGTA-AGA-T--T-------A---A--GAGAT-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TTTT------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-T--A-CTGTGTAA---------ACATTGTTT--T-TTACAATTTATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAAC----TTTTAAA-----------GAAAAATTCA----TTTT------G-AC--ATATAT---A-C-------ATTTTAGGGCAAAA-AC---TG----T----T------------ATA----TTCAT--------------------------------AA---------TATA--CTT-------------------AA-TA-TTGTTT-----------TTACCCATAACTGTAATGACATT-C-A-----TTTGGCAT--AAAGTATCAGTGC-A----CTCACAA----ACGTGTT-CT-TAA-AAAC-aattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|11 : TA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CCAG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC------TAA--GT--TCAA--TTAGATTAAGCGAATTCTT--TAACAATATTTTTT----TT----TT------A--------T---G--TTAGATGT--------AAGAT------------T--TGTGCAT---ACCT--GAT-T--T--TTTTCACA-CC----AAA-AT
gi|11 : aggatcataatt---------A------TTTT------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GAT--G-TTGTGAAA---------TC---AGTT--T-TTACAAATAAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAAC----TTTAAAA-----------GAAAAATACAA-AAAATT------G-AA--AAATAT---ATATTTTTTTATTTTAGTACATACTGT---TG----T----T---TTT---AATACATATGTTTATTTTGT-ATAATG--TAA------ATTA---TATA---------TATA--TTTATATGTTTT--TGTTT---AA-TA-TTGTTTTTGA-ATA-TATATCACATACTTTTTATAGCATT-T-T-----GTTGTCAT--CAAGTACCAGAAC-A---GCT-------------GTT-CC---A-AAAC-TA--CACA----Tgtagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagT----AA-G-TTGAG---G---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CCAGAA-AA-G-G-TAATTG-AAAACGGTTTTA-GAACCTTGC------CAA--GT--AAAC--TTAGCTGAAGCGAATTGTT--TAAAAA-ATTT--------A----AA----------------------TT---T-T--------A-------------------------T---AAAA--A------------------------AAA-ATAGT-T--TT-CT--T-GTA-T----T--GGG-GTAATAA-----AT--TATA--------TG--GTCAATAA-A-----------AGT-GC-AC-ATTTTAAA-ATAATATGGTG-------TGTT----------A-AA-TGTA-AGA-T--T-------T---AAGGA-AT-TTT------AA--A-----------ATA-ATAT---------ACCAGATTTTT------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : ATATCTATA--CTCCAC----AAA----AT----AA-G-TTAAG---G---G---aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|13 : taagttgaggaacataccacatataaattctactggactaaaattctaactgttctgtaaacatacccagaaaaggtaattgaaaacggttttagaaccttgccaagtaaacttagctgaagcgaattgtttaaaaaatttaaattttataaaaaaaaatagttttcttgtattggggtaataaattatatggtcaataaaagtgcacattttaaaataatatggtgtgttaaatgtaagatttaaggaattttaaaataatataccagatttttttcaaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggC-TTGG-A-AA-G-GGTAAATG-AAAACGGGATTTTGAACATGGC--T---GGA---T--CAACATTTTTCTTTAGAGAATTCTT--TACAAATATTCTTT---------------------------T---T--TT---T-TTTTTAAAAAAAAT------------TAATTT---T---AAAATTAAT-T-----TTCTTG-A-AA----AAA-ATAC--T--TT-TT--TTGTATT-------GGA-TTAATAAAT-TGTT--TATA--------TA--GTCAAGAA-A-----------TAT-GCAAA-ATATAAAA-A-----TG--A-------CATT---------------T-----------T-------T----------T-TTT------AA--A-----------A-----AA---------A----------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-T--G-TTATGAAA---------AC---AG------------TGTAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA-------------------------AAAAACAC-----TTTTC-----G-AA--AAATAT---A-A-------ATTTTGGAGCAcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatatataaatc----GA----AA----------------------TT---T-T--------AGAAT------------T--TGT---T---AAAA--ACG-C--C--TTTTTA-T-CTT---AAA-AAAG--T--TTTCT--T-GTATT----T--G-A-CTTTTAAAA-AGAT--TATATA------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------AGGA-TTT--AGA-TA-------------------AT-TTA------AA--A-----------AC
gi|14 : ---------A------TTTT------TAAAAATCGGAAAAC--------G-GTCT-----A--A---TTCAACAG-----G-G-T--A-TTTTGAAA---------AC---AGTT--T-TTAaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|15 : gaaattttagaatttgttaaaaacgcctttttatcttaaaaaagttttcttgtatttgacttttaaaaagattatatatggtcaataaatatgcaaaatttgaaaataatctgatgttaggatttagataatttaaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaATTTTTA-ATAAAG--CAA------ATTTTGAGGAA---------TGTA--TTT-------TTTTAGGTT---GA-GG---ATTTTTAATATA-TATTGCCCATGGTTGTAATAGCATT-CAT-----TTT-------------TCGGAGTAA---GCTC-CAA----ACCTGTT-TT-TAA-ATCC-TA--AAC------ATAC---CATTTT---A-ATGT---AACATCt
gi|16 : T----T--GGA-GTAATAAAT-TGAT--TATA--------CT--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ACAATCTG--A-------TAT-------------------A-AGA-T--T-------T---A--GG-A--------------------------------------------A------TTTT------T---------AAAA--------------C-----A--G---TTTATT-C-----G-A-T--T-TTGTCACA---------CC---AGAA--T-GTA---TCTATTT--TA-TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-----TATCAAA-----------Gtaaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|17 : TTTTGA-TTA-TATTGCCCATACTTTTATTAGCATT-C-T-----CTTGGCAT--AAAGTATC--AGC-A---GTTC-CAA----ACAT-TT-TA-TAAGAAAC-TG--TAGA----GATACGATCA---T---A-ATGT---AACATCTTATAG
gi|18 : tttaTATGTATA-----CAC------A----AT----AA-A-ATAAG-----------TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CTAG-A-AA-ATG-TAATTG-AAAACGGTTTTgaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatatTAACG--TAA------AG-A---AAAA---------TATA----------------AGGTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCTATAATTGTATAAGGTTT-C-TGTTACTTT--C-T--AAAGTATCAGAGC-A---GCTC-CAA----AC
gi|2 : ATATA-A-TACTCCA--AAA----AT----AA-A-TTAAG---G---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CTAG-A-AAAG-G-TAATTG-AATACGGTTTTCTGAACCTT--------CAA-------AAC--TTAGCTTTAGCAAATTGTT--TA-AAACAAGTTTT----GAGAAAAA------A--------T---GAGTT---T-T--------GAAATGAAATCTAACAAT--TGA---A---AAAA--AAG-C--A--TTTTTA-A-T---------------T--TT-CT--T-CTATT-------GGA-GTAATAACT-TGAC--TATT--------TG-----------------------TAT-----A-ACTTGAAA-AAAAATTA--A-------TATA----------A-CA-TGTA-AGACTG-A-------G---A--GG-CT-ATT------AA--A-----------ACA-GCATTCCA-----G------TTTT------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-A--GATTTTGAAAAATCGGAGGAT---GGTCCAT-TT-CAACTAAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAG----TCTTAAAATGATACAAATGAAAACTACAA-AATTTT------G--A--AAATAC---A-A-------ATTTTAGGGCAAAA-AC---TA----T----T---TTTA--AA-ATATGCGTTTGTTTTT---TAATG--TAA------ATTT---AAAAAAAATACAGTATA--TAT-------TT--GGGCC---AG-TT-TTGCTTTTAA-ACA-TAGTGCCCATATGTGTGATAGCATT-C-T-----TTTATAATAAAAAATATAAGAGC-A---GCTC-TAA----AC-TGTT-TT-T-G-AAAC-TA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAA-AATTTT------G-AA--AAACAT---A-A-------ATTTTAGGGCAAAT-TC---TG----T----TA--TTTTTAAA-AAATGCGTTTATTTTTA-ATAATGTATAA------ATTagcgtatattattctaggatt
gi|3 : C-A---GCTTTCAAGCTTACTTGCTGTT-TAA-CAGC-T-----CA----TATTC---CA---C---A--TGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcataatgcacatttttgtttttattttattttattttatttcaaagatatatttatataatcaagtttataatttgtctCATGAACATA-ACTCCACCA--AAA----AT----AA-A-TTGAG---GCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TCAG-A-AA-G-G-TATTTG-AAAACGTTTTTTTGAACTTTGCCAT---TGA--GT--TAAC--TTGGCTTTTGCAAATTCTT--AAAAAATATATTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---TTTTAAAA--TAT-C--A--TTTTTA-A-CC----GAA-AT-G--T--GT-CC--T-GTATTAGAATAAGGA-GTAATCATT-TGAT--TATA--------TG--GTCAATAA-A-----------TGT-GTAAA-ATTTGAAA-ATAATCTG--A-------AGTT----------G-GA-TGTA-TGA-TAAT-------T---A--GC-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-T--G-TTGTGAAA---------AT---CTTT--T-TTACAAATTAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAAC----TTTTGAA-----------GAGAAAAACAA-AATTTT------GTAA--AAATAT---A-A-------ATTTTATGGCAAAA-AA---AG----T----T---TTT---AA-ATATGTGTTTATTTTTT-ATTTTG--TTA------ATTC---AATA---------TATA--TTT-------GG--GGTTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCCATATTTGTTAAAGCATT-G-T-----TTTTGCAT--AAAGTACCAGAAA-A---GCTC-CAA----ACTTGGT-TT-TAA-AAAA-TA--AACA----TATAC---CA---TGGGA-A-GT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : TATATA----CTATTA--AAATGTTAT----AATA-T-------G---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CTAG-A-AAAG-G-TAATTG-AAAATGGTTTT---AGCATTGC--T---TAA--GA--TAAC--TTCGCTTA---GAGTTATG--TACAAATATTTTTT----AA----AACAAA--A--------T---GAATT---T-T--------AAAAT------------T--TGC---T---AAAA--CAG-T--A--TTTTAA-A-CCGA--AAA-ATAG--T--TTTCT--T-ATATT-------GGA-GTAGTAAAT-TCGT--CAT---------TG---TCAATTA-A-----------TAT-GTAAT-ATTT----------TTG--A---------------------A-GA-T----AAA-TG-T-------T---G--GA----TTT------AA----------------G-ATAT---------A-------------------------GA------------G-GTCG-----A--G---CT--A--T-----G-A-AAAG-CTGT--AT---------AC---GTTT--TATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAA----TTTTAAA-----------TAAAAATACCA-AATTTTCCCCCAA-AA--AAACATTAGG-A-------ATGTTAA---AAAA-AC---TG----T----TACTTTT---AA-ATGTGCATTTAGTTTTG-ATAATA--TTA--------TT---AAAA---------TGTAAGTTT-------TC--AGGTT---AC-TA-TTGCTTTTGA-ATA-TATTGTCCATACCTGTATTAGCATT-T-T-----TTTGGCAT--ATAGTATCAGCAT-A---GCTC-CAA----TCTTGTT-TT-TAA-AAAC-TATGCACACTAGTATAC---TA---T---aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatattttCATACACATATACTACACCAGTACA----ATCCACAA-A-CTAAGTTAG---G----ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CTAG-TTAA-G-G-TAATTG-AAAACAGTTTTCTGAATC-TGC--T---T-A--GT--TAAC--TAAGCATAAGATAAATCTT--TACAAATACTTTTT----GT----AA------A----------------T---T-T--------AAAAT------------T--TGT---T---AAAA--AG--C--ATTTTTTTA-C-CCAAAAAAA-AAAG--T--TT-TT--T-GTATT--------GATGTCATA------AT--TATG--------TG--CTCttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgataTAAATTTT-AAATTGATGA----A----TAGGATT----TTTTAAA-----------TAAAAAAACAC-AAATTT------G-TA--AAATAA---A-A-------ATTTTGGGGCAAAA-GC---TGTTATT----T---CTT---GA-ATATGCCTTTATTCTTA-ATAAT---T-A------GTTT---AAAACCCT-----TAT---TTC-------TT--GAATT---GA-TA-TTATTTTTCA-ATA-TATTACTTATCCTTGCTTAAGCATTAT-T-----TTTGGCAT--AACGTATCAGAGC-A---GTTC-AAA----GTTTGTT-TTAAAA-AAACGTA--CATATTTTTATAC---GAT--T---ATATGT---AACACCGTGGGGtccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATATATA--CTC-------AAA----AT----AA-AAGCAAA---G---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCTAA-A-AA-G-G--AATTG-GAAGTGATTTTCTGAACTTTGC------TAA--GTTATAAC--TTGGCTTAAGAGAATTCTT--AACAAATATTTTTTTAACAA----AAAC----A--------T---GAATT---T-C--------AAAAT------------T--TGT---T---AAAA---------A--TACTTACC-CC----AAA-ATAGT-T--TT-CTAAT-ATATT----T--GT--GTAATAAAC-TGATTGTATA--------CA--GCCGATAA-AAGATATTTTATTAT-GTAAG-ATTTGAAA-ATAA------A-------T---------------AA-TG---GG---A-C-------C---A--GC-AG-TTC------AG--T-----------TCA-GCA----------G------TTTT------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-T--G-TTG-AAGA---------AC---CATG--G-TTAAACCTTAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTTTTTTTTA-----------TAAAA--ACAATAATTTT------G-AGGCAAA------A-A-------CTCTTA--------------T-----T----T---TTT---AT-GTATGCGTTTATCTTTA-ATAATG--TAA------ATTA---AAAA---------TAAA--GTT-------TTA-GGGTT---AA-TA-ATGTTTTTGA-ATAGTGTAGC---------TATCAG-------T-----TTTGG--G--AAAGTAAAAGTGC-A---GCTC-CAA----ACTTGTT-CT-TAA-AAAC-Taataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CTAG-A-AA-A-GATAATTG-AAAATGG-------AACCTTGC--TAATTAA--GT--TAATCATTA--TTCA---AATTATTCTTACAAATATTTT-T----GA----GA--------------------------------------------------------------------AAAA--AAT-TGAA--TTTTTA-A---------A-AT-----------T--T-GT--T----T--GAA---AA-AAATCTGATGTTAGA--------TG-------TAAGA-----------TTTAGCGGATATTTACAGCATA-CCTG--A-------TTTTTTAACACCAAA-AA-TGTATACA-TT-T-------T---A------T-TTT------GG----------------G-G------------A------TTTT------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-T--G-TTGGGAAA---------AC---AGTT--T-----GAT--AGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAAC----TTTTCAA-----------GAAAGCTACAA-AATTTT------G-A-----------------------------GGCAAAA-AT---TG----TAGTTT---TTT---AA-TTATGCGTTCGTTTTTA-ATAATG--TAA------ATTA---AAAA---------TATA--TTT-------TTTAGGTTT---AAGTA-TTGTTTTTGA-ATA-TATTGCTCATACTTGTATCAGCATT-C-T-----TTTGACAT--AAAGTACTGGAGC-A---GATC-CAA----ACTCATT-TT-TAA-AAAC-TA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatTTT----GA----AATCT---A------------A--TT---T-T--------AAAAT------------T--TGT--------AAA--AAT----A--TATTTA-A-TCCG--GAA-ATAG--T--TTTCT--T-GTATT-------GGA-GTAATATAT-TTAT--TATA--------TG--GTCAGTAA-A-----------TAT-ACAAA-AAATGAAT-ATAAGCTG--ATGTTAGATGTA----------A-GACTGCA-TTA-TA-TGTGAAAAC---A--GC-ATATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TTTTGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-T--G-TTGTAAAA---------AC---AATT--T-TTACAATTTAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAA----TTTTAAA-----------GAAAAATACAtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : ataaattctactggccaaactgttcggtggacaaactcataaaattgaacgaaaacgattgtttgaaccttgcA-TA-TTGTTTTAGA--TA-TGTTTTCAATACTTGTG---GCAGT-C-A-----TTTTGCAT--AAAGAATCAGAGC-AGGTGCTT-CGA----ACTTGTT-TT-TAA-AAAA-TA--TAtttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
blockSeqs : TACTACACCAGT TGTT CCAC T A GACCGT AA AAGAA AT TAAAATTGAAACGGTTAA T A T AT G A C C TAAT . TA AT TA A CT C GAGAAAAAATGAGTTTTGAAATGAAATCTAACAATTGAAAAAAAAGCATTTTTAAT . A AA . T AA T AGAATAA T G C TG ATTTTTAT AAG G AGATATTTTAT A T C T GT TGTTAGATGTAAGACTGCATTATATGTGAAAACAGCATATTTCACACCAAATTGTATAGTTTACGGTTTATTTTGAAATTTTTTGAAAATCGAAGTGTGGTTCAATTTAATT T A AA A AATCGGAGG ATTGTTT A C ATAA T T GTTTTTA G G A CGAAA CTTTT ATGATACAAAT T CCCCCAAAA TATATTTTTTT GG TGT TTATTT TTA T T TA A ATTTTGA AAAATACAG AG ATATGTTTTT T . G . T G C AT CTGTTAC G AA A GGT T GCTT C G A G G TGC CTAG GAT TGGGAA TTG A A T . C G .
blockSeqs : ACTCCACCA . . . . GAACAT T . . TAAAATACATTTAA . . . AT A . C A CAT . . CA AA C . A TTTTATGTTAGATGTAAGATTTGTGCATACCTGATTTTTTTCACACC . A T . T . . T . A . GT TA G . . . . . T . TATAACATGTAAGACTGAGAGGCTATTAAAACAGCATTCCAGTTTTTTTGCACAAAACTTCATAAAAGTTATTATGTC . . . . . GGTCCA . C TTGG . . AAAACA G . A ACCTT C . . GAGGC TTAGGA GT AC TAGTTT A . A . A ATTA CCCT . TTTTA G . . . . . G AT CAT G . . . . . A . . . . A TTTT . TTATAT . A
blockSeqs : ATACTCCA . . . . GACCAT A . . TAAAATTCTAA . . . AT . . A C T . . . AA C . A AAAACAAAATGAATTTTAAAATTTGCTAAAACAGTATTTTAAACCGA . A T . T . . T . A . . . G . . . . . T . TTTTTTAACACCAAAAATGTATACATTTTATTTTGGGGATTTTTGAAACTTGGAGAATGTTCCAGCAATTCACCAG . . . . . AGTT . C TAAG . . A T . A A C . . CGAA TAC GA AC TTACT . . A . A ATTT . . TTTAG G . . . . . C TT ATT A . . . . . T . . . . T . . TAAT . .
blockSeqs : ATCCAT . . . . GCAAT A . . CAAAATTCAAT . . . AG . . T A T . . . TA A . C TTTTTTTTTTAAAAAAAATTAATTTTAAAATTAATTTTCTTGAAA . A . . . . . T . A . . . G . . . . . T . AGTTGGATGTATGATAATTAGCATTTTAAAACGGTATATTTTTTCAGACAATGGCCCAGCTCAACT . . . . . AGTT . C TTAA . . A A . G A G . . GTAA TAA GG TC TTA . . T . A ATTC . . TTAG G . . . . . A TA TT T . . . . . T . . . . T . . CAT . .
blockSeqs : CTCCAC . . . . TTAGG A . . TTCAATTCAAA . . . AG . . C C T . . . TA C . A TAACAAAAACATGAATTTCAAAATTTGTTAAAAATACTTACCCC . A . . . . . T . C . . . G . . . . . A . TAATGGGACCAGCAGTTCAGTTCAGCAGTTTTTACAATACAGTTT . . . . . AGAA . G TTA . . G G . A A C . . GAC CAA GG AA TT . . G . A GTTT . . TTG T . . . . . T AT CT G . . . . . T . . . . A . .
blockSeqs : CTATTA . . . . GGT A . . TCAAAATCAAA . . . G . . T T T . . . TT C . C GAAAATGTTTTAAAATTTGTTTTTAAAATATCATTTTTAACC . A . . . . . T . T . . . G . . . . . T . CATTTTTTTTTAAAAAAATCAGAGGATGATCCAGTTCAACA . . . . . CTTT . A GT . . A G . A A A . . GAA TAA TG AC TT . . A . T ATTA . . GGG G . . . . . T AA CT G . . . . . T . . . . C .
blockSeqs : CAC . . . . GG T . . TAATATTCAAA . . . G . . C A . . . . AA A . C GTAAATTTAAAATTTGTTAAAAAGCATTTTTTTACCCAAAA . A . . . . . . . A . . . C . . . . . C . AGATAAATGTTGGATTTAAGATATAGAGGTCGAGCTAT . . . . . GTTT . C TT . . A G . G A T . . GAA TAA GG GC TT . . A . T ATTA . . TCA A . . . . . C TT GT G . . . . . T . . . . T .
blockSeqs : CTC . . . . T T . . AAAAATTCAAA . . . G . . C C . . . . AA A . C GAAAGAAGAAATAAAGAAAAAAAAAGGCATTTTTTACCCG . A . . . . . . . A . . . G . . . . . G . TATAAGATTTAGGAATTTTTAAAACAGTTTATTC . . . . . CATG . . TA . . A A . G A C . . GTA AAA A AT TT . . A . A AGA . . TTG G . . . . . C TA TT G . . . . . T . . . . T .
blockSeqs : . . . G . . CAAA . . . G . . . T . . . . CA . . C GAAATCTAATTTTAAAATTTGTAAAAATATATTTAATCCG . . . . . . . . . A . . . G . . . . . . . . . . . . AGTT . . . . . A . . T A A . . GA AA G . TT . . . . A TT . . A T . . . . . C TC CT T . . . . . T . . . . .
blockSeqs : G . . TAAA . . . G . . . C . . . . A . . . GAAATTTTAGAATTTGTTAAAAACGCCTTTTTATCTT . . . . . . . . . A . . . . . . . . . . . . . . . . AATT . . . . . C . . . A . . . GA . . . . . . . . . . . . . . . C TC CA . . . . . . . . . . .
blockSeqs : . . . A . . GAGAAAAAAATTGAATTTTTAA . . . . . . . . . . . . . . . . . . . . . . . . . . AG . . . . . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : AAATTTTATAAAAA . . . . . . . . . . . . . .
blockSeqCons : CTCCAC****** GGT********* T***** ** ** T****** A*********** GAA********* AC**** TT*********** A* ATTN********* *** TAAT*******
originalCons : CATATATATA-ACTCCACCA--AAA----AT----AA-A-TTAAG---G---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
finalCons : CATATATATACTCCAC------AAA----AT----AA-A-TTAAGGGT---------ACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGCT-----TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATTT------GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGAA-----------CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTTGAA---------AAATAT---A-A-------ATTTTAGGGCAAAAAC----TGTT-----------TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAAATTN---------AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CATAAT-------GT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 2222222 8888888888888888888888888888888888888888888888 111 222222 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 2222222 11111111 11111111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111 333333 111111111111 11111 11111111111 111111111111 11111111111111 1111111111111 111 1111111111111 222222222 222222222222 1111 111 22222222222 111 1 1 333333333
lowQualScore : 4 11111 7777 55 7777777 44 99999 55 8888888888888888888888888888888888888888888888 3 6 3 222 6 3 2 4 000000 55 55 00 11 3 55 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 1 11 44 0 44 3 4444444 3 1 3 0 88 55555555 777 3 55555555555 3 0 3 3 0 4 44 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44 3 333333333 999999999 3 3 0 000000 3 3 999999999999 2 3 2 777777777 22222 55555555555 0 3 555555555555 0 44444444444444 11 888888 4444444444444 111 4 77 0 44 1 0000000000000 222222222 55 999999999999 2 666 3 3 0 3 3 1 66 888888888 3 44 3 555 6 6666 2 3 3 3 3 999 8888 111 44444444444 444 0 1 1 5 1 1 666666666
lowQualScore : . ..... .... .. ....... .. ..... .. .............................................. . . . ... . . . . ...... .. .. .. .. . .. . ............................................................................................................... . . .. .. . .. . ....... . . . . .. ........ ... . ........... . . . . . . .. ............................................................................................................................................................................ . . .. . ......... ......... . . . ...... . . ............ . . . ......... ..... ........... . . ............ . .............. .. ...... ............. ... . .. . .. . ............. ......... .. ............ . ... . . . . . . .. ......... . .. . ... . .... . . . . . ... .... ... ........... ... . . . . . . .........
lowQualScore : 0 99999 7777 99 7777777 55 11111 00 1111111111111111111111111111111111111111111111 3 7 3 000 7 3 0 3 111111 00 00 00 22 6 00 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2 22 66 0 66 3 4444444 1 6 1 2 55 44444444 777 3 88888888888 3 5 3 3 5 5 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3 66 3 333333333 222222222 3 6 3 777777 6 6 111111111111 0 3 9 222222222 22222 88888888888 6 6 555555555555 4 55555555555555 11 222222 0000000000000 000 0 44 5 66 4 6666666666666 333333333 00 111111111111 0 444 3 3 2 1 1 0 22 555555555 8 66 1 444 2 5555 5 3 3 3 3 444 9999 777 11111111111 000 6 0 0 0 0 0 555555555
consensus : NATATA-TATACTCCAC--AAAATA----AG-TTAAGG---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
Reference ( family-166 ) : CATATA-TATACTCCAC--AAAATA----AA-TTAAGG---G---TACCCTA-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTGTTCTGTGGACAAAC-CTAG-A-AA-G-G-TAATTG-AAAACGGTTTTCTGAACCTTGC--T---TAA--GT--TAAC--TTAGCTTNAGCGAATTCTT--TACAAATATTTTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---T---AAAA--AAT-C--A--TTTTTA-A-CC----AAA-ATAG--T--TT-CT--T-GTATT----T--GGA-GTAATAAAT-TGAT--TATA--------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------A-GA-TGTA-AGA-TA-T-------T---A--GN-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCGGANAAT--------G-GTCC-----A--G---TTCAAC-T-----G-G-T--G-TTGTGAAA---------AC---GGTT--T-TTACAATTTAGTT--T--TGTTG-A-AAGA------A-----CATGGTTAAATCTT-AAATTGATAA----A----TAAGAAC----TTTTAAA-----------GAAAAATACAA-AATTTT------G-AA--AAATAT---A-A-------ATTTTAGGGCAAAA-AC---TG----T----T---TTT---AA-ATATGCGTTTATTTTTA-ATAATG--TAA------ATTN---AAAA---------TATA--TTT-------TT--GGGTT---AA-TA-TTGTTTTTGA-ATA-TATTGCCCATACTTGTANTAGCATT-C-T-----TTTGGCAT--AAAGTATCAGAGC-A---GCTC-CAA----ACTTGTT-TT-TAA-AAAC-TA--CACA----TATAC---CA---T---A-ATGT---AACACCGTGTGGTTCCGGCNAAGAATAGAANCACTGCCGAGTCTCTGNANAGGGGTAGGGATCCTCCGAATGGGTGTCGTGTTCA
gi|1 : -TACACTCCTA--AAAATA----AA-TTAAGGTT-G---TGCCCTA-TATAAATTTTAC-----TGAA--C-------T-------AGAATTTGA-------A--------------CAGCTCTATGGACAAGC-ATAGTA-AA-G-A-TAAATG-ACTATGGTTTTCTGAAC------------AAAGGT--TAAC--TTAGCTTTTGCAAATTCTT--TTCAAATAATTTTT----GA----AG------AAAAAACAGT---GAATT---T-T--------AAAAT------------T--TGT---T---AAAG--AATGC--A--TTTTCA-AGCT----AAATATAG--TATTT-CT--T-GT-TT----T--GGA-GTAACAAAT-TAAT--TATA--------TA--GTAAATAA-A-----------TAT-GCTAG-ATTAGAAA-ATAATCTG--A-------TG------------A-GA---TA-AAA-AA-T-------TAAGA--GG-AT-TTT------AACTA-----------GC--ATATCCA------A------TTTT------T-----TC
gi|1 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcagg-----TCGGAGAAT--------G-GCCC-----A--T---TTCAATAG-----G-G-T--A-TTATGAAA---------AC---GTTT--T-TTACAATTAAGCT--TGACATTG-A-AAAA------AAA---CATGGTTAAATGTT-AAATTGATCA----A----CAAGAAT----TTTTAAA-----------GAATAACA-AA-AATTTT--------AA--AAATAC---A-T-------ATTTTTGGGTTAAA-ACTCTTGT---T----T---TTT---AA-ATATGCACTCATTTTGATATAA-A--TAAACATCTATTG---GAAA---------TAAG--TTA-------CA--TGATTCTCAA-TGTTTTTTTTTGA-GTA-TATTacgctaaattatatgcgttttattttggcaattttgaaaatcggagaatggcccatttcaatagggtattatgaaaacgttttttacaattaagcttgacattgaaaaaaaacatggttaaatgttaaattgatcaacaagaatttttaaagaataacaaaaattttaaaaatacatatttttgggttaaaactcttgttttttaaatatgcactcattttgatataaataaacatctattggaaataagttacatgattctcaatgtttttttttgagtatattaattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|10 : tagaagcaattttcaaagtaacacaacacaatacacactctatttttaggcaaatgaagacattacatgtattttgacatttataccaacttttgttaattttgaaaatacaagggaaataattcatattgtatttgtcaagtaaggattatccttacttcaattcaggtacactcctaaaaataaattaaggttgtgccctatataaattttactgaactagaatttgaacagctctatggacaagcatagtaaagataaatgactatggttttctgaacaaaggttaacttagcttttgcaaattcttttcaaataatttttgaagaaaaaacagtgaattttaaaatttgttaaagaatgcattttcaagctaaatatagtatttcttgttttggagtaacaaattaattatatagtaaataaatatgctagattagaaaataatctgatgagataaaaaattaagaggattttaactagcatatccaattttttcacgctaaattatatgcgttttattttggcaattttgaaaaTA-TATAATCCAT--AAAATA----TG-TTAAGGACCG---TTTTCTT-TATTAACTGAAC-----CGAAATC-------C-------A-------A-------A--------------ATGTTCTCTGGGCAAGT-CTAG-A-AA-ATG-TAATTG-AAAATGGTTTTCTTGACCTTG---T---TAG--GT--TGAC--TTAACTTTAGAGAATTCTT--TACAATTTTATTAT----GA----AAGAAGAAA--------TAAAG------------------AAAA--------------------------AAAA--AGG-C--A--TTTTTT-A-CCCG--AAA-ATAAAAT--TT-CT--T-GTATT-------GGA-TTAATAAGT-TAAT--TATAATTTTTATTGAAGTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------GGTA----------A-GA-TGTA-AGA-T--T-------A---A--GAGAT-AT--------A--T-----------ATGCGTATCGTCTGTCGA------TTTT------TGATAATCGGAAGAA--------A-CTCC-----GCCG---TTCAACAT-----A-A-T--A-CTGTGTAA---------ACATTGTTT--T-TTACAATTTATTA--TAATGTTA-A-AAGA------A-----CACGGTGAAATCTT-CA-TTTATAACGAAA----TAAGAAC----TTTTAAA-----------GAAAAATTCA----TTTT------G-AC--ATATAT---A-C-------ATTTTAGGGCAAAA-AC---TG----T----T------------ATA----TTCAT--------------------------------AA---------TATA--CTT-------------------AA-TA-TTGTTT-----------TTACCCATAACTGTAATGACATT-C-A-----TTTGGCAT--AAAGTATCAGTGC-A----CTCACAA----ACGTGTT-CT-TAA-AAAC-aattcaataccttatgttgatctagttacacttacaatattggcagtttcaaagtttcta
gi|11 : TA-TATGAATTAAAC-----TGAA--T-------T-------A-------A-------AATTGAAACGGTTAACTGTTCTACGAACAAAA-CCAG-A-AA-ATG-TAATTGAAAAACAGGTATCTGAACATCGC------TAA--GT--TCAA--TTAGATTAAGCGAATTCTT--TAACAATATTTTTT----TT----TT------A--------T---G--TTAGATGT--------AAGAT------------T--TGTGCAT---ACCT--GAT-T--T--TTTTCACA-CC----AAA-AT
gi|11 : aggatcataatt---------A------TTTT------T--------GAAAAT--------AAG--------A--G---TTCAAC-T-----G-GAT--G-TTGTGAAA---------TC---AGTT--T-TTACAAATAAGTT--TGGTGTTG-A-AAGA------A-----TATTGTTAAATCTT-AAATTAATAA----A----TAAGAAC----TTTAAAA-----------GAAAAATACAA-AAAATT------G-AA--AAATAT---ATATTTTTTTATTTTAGTACATACTGT---TG----T----T---TTT---AATACATATGTTTATTTTGT-ATAATG--TAA------ATTA---TATA---------TATA--TTTATATGTTTT--TGTTT---AA-TA-TTGTTTTTGA-ATA-TATATCACATACTTTTTATAGCATT-T-T-----GTTGTCAT--CAAGTACCAGAAC-A---GCT-------------GTT-CC---A-AAAC-TA--CACA----Tgtagtcgtatacgttttgtttttttttaagatttttgaaaataagagttcaactggatgttgtgaaatcagtttttacaaataagtttggtgttgaaagaatattgttaaatcttaaattaataaataagaactttaaaagaaaaatacaaaaaattgaaaaatatatatttttttattttagtacatactgttgtttttaatacatatgtttattttgtataatgtaaattatatatatatttatatgtttttgtttaatattgtttttgaatatatatcacatactttttatagcattttgttgtcatcaagtaccagaacagctgttccaaaactacacatgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : aggatcataatttatatgaattaaactgaattaaaattgaaacggttaactgttctacgaacaaaaccagaaaatgtaattgaaaaacaggtatctgaacatcgctaagttcaattagattaagcgaattctttaacaatattttttttttatgttagatgtaagatttgtgcatacctgatttttttcacaccaaaatgtagtcgtatacgttttgtttttttttaagTA----AG-TTGAGG---AACATACCACA-TATAAATTCTAC-----TGGA--C-------T-------A-------A-------AATTCTAA-------CTGTTCTGTAAACATAC-CCAGAA-AA-G-G-TAATTG-AAAACGGTTTTA-GAACCTTGC------CAA--GT--AAAC--TTAGCTGAAGCGAATTGTT--TAAAAA-ATTT--------A----AA----------------------TT---T-T--------A-------------------------T---AAAA--A------------------------AAA-ATAGT-T--TT-CT--T-GTA-T----T--GGG-GTAATAA-----AT--TATA--------TG--GTCAATAA-A-----------AGT-GC-AC-ATTTTAAA-ATAATATGGTG-------TGTT----------A-AA-TGTA-AGA-T--T-------T---AAGGA-AT-TTT------AA--A-----------ATA-ATAT---------ACCAGATTTTT------T-----TCgaaatctacggaaaaatccttttccgtatattatttttgg
gi|12 : ATATC-TATACTCCAC--AAAATA----AG-TTAAGG---G---aaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggcccttaacttattttgtggagtatagatatcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|13 : taagttgaggaacataccacatataaattctactggactaaaattctaactgttctgtaaacatacccagaaaaggtaattgaaaacggttttagaaccttgccaagtaaacttagctgaagcgaattgtttaaaaaatttaaattttataaaaaaaaatagttttcttgtattggggtaataaattatatggtcaataaaagtgcacattttaaaataatatggtgtgttaaatgtaagatttaaggaattttaaaataatataccagatttttttcaaaccattttttttttaaaactggaggatataaaattatataccattgaaatgtaataaaaatgggaaataaatgacatggC-TTGG-A-AA-G-GGTAAATG-AAAACGGGATTTTGAACATGGC--T---GGA---T--CAACATTTTTCTTTAGAGAATTCTT--TACAAATATTCTTT---------------------------T---T--TT---T-TTTTTAAAAAAAAT------------TAATTT---T---AAAATTAAT-T-----TTCTTG-A-AA----AAA-ATAC--T--TT-TT--TTGTATT-------GGA-TTAATAAAT-TGTT--TATA--------TA--GTCAAGAA-A-----------TAT-GCAAA-ATATAAAA-A-----TG--A-------CATT---------------T-----------T-------T----------T-TTT------AA--A-----------A-----AA---------A----------------------TCAGAGGAT--------G-ATCC-----A--G---TTCAAC-A-----GTG-T--G-TTATGAAA---------AC---AG------------TGTAG-------TGCTG-A-AAGA------G-----CATGTTT-AATCTTGAAATTGCTAA----A----TATGA-------------------------AAAAACAC-----TTTTC-----G-AA--AAATAT---A-A-------ATTTTGGAGCAcaatcgaagtttaaatatttattggttttattttacaatacaagttatatt
gi|14 : aaatacttatatatatataaatc----GA----AA----------------------TT---T-T--------AGAAT------------T--TGT---T---AAAA--ACG-C--C--TTTTTA-T-CTT---AAA-AAAG--T--TTTCT--T-GTATT----T--G-A-CTTTTAAAA-AGAT--TATATA------TG--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ATAATCTG--A-------TGTT----------AGGA-TTT--AGA-TA-------------------AT-TTA------AA--A-----------AC
gi|14 : ---------A------TTTT------TAAAAATCGGAAAAC--------G-GTCT-----A--A---TTCAACAG-----G-G-T--A-TTTTGAAA---------AC---AGTT--T-TTAaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaatttttaaaaatcggaaaacggtctaattcaacagggtattttgaaaacagtttttat
gi|15 : gaaattttagaatttgttaaaaacgcctttttatcttaaaaaagttttcttgtatttgacttttaaaaagattatatatggtcaataaatatgcaaaatttgaaaataatctgatgttaggatttagataatttaaaaacaccattcccgagttgttgttcttttcaaatcaaacttttttgggggcaATTTTTA-ATAAAG--CAA------ATTTTGAGGAA---------TGTA--TTT-------TTTTAGGTT---GA-GG---ATTTTTAATATA-TATTGCCCATGGTTGTAATAGCATT-CAT-----TTT-------------TCGGAGTAA---GCTC-CAA----ACCTGTT-TT-TAA-ATCC-TA--AAC------ATAC---CATTTT---A-ATGT---AACATCt
gi|15 : ATATAGTATACTCTAC--AAAATA----AG-TTAAGG---taaggaaaataaattatttggtccttaacttattttgtagagtatactatataataattattagttgacacactattccagaaacctctaattgt
gi|16 : atttttaataaagcaaattttgaggaatgtatttttttaggttgaggatttttaatatatattgcccatggttgtaatagcattcatttttcggagtaagctccaaacctgtttttaaatcctaaacataccattttaatgtaacatctaaggaaaataaattatttggtT----T--GGA-GTAATAAAT-TGAT--TATA--------CT--GTCAATAA-A-----------TAT-GCAAA-ATTTGAAA-ACAATCTG--A-------TAT-------------------A-AGA-T--T-------T---A--GG-A--------------------------------------------A------TTTT------T---------AAAA--------------C-----A--G---TTTATT-C-----G-A-T--T-TTGTCACA---------CC---AGAA--T-GTA---TCTATTT--TA-TGTTC-A-AAGA------A-----CATGATTCAATCTT-AAATTGTTGA----A----TAAGAA-----TATCAAA-----------Gaataattattagttgacacactattccagaaacctctaattgt
gi|17 : TTTTGA-TTA-TATTGCCCATACTTTTATTAGCATT-C-T-----CTTGGCAT--AAAGTATC--AGC-A---GTTC-CAA----ACAT-TT-TA-TAAGAAAC-TG--TAGA----GATACGATCA---T---A-ATGT---AACATCTTATAG
gi|18 : tttaTATG-TATACACAAT--AAAATA----A-----------G---TGCCCTA-TATAAATTATGC-----TGAA--C-------C-------A-------A-------AATTCAAT-------CCGTTCTGTAAAGAAAC-CTAG-A-AA-ATG-TAATTG-AAAACGGTTTTgaaatgaggtaatcagtttcgagttgtattatag
gi|19 : tatgtaaagacgaacttcacatgtatgtcgaatatatTAACG--TAA------AG-A---AAAA---------TATA----------------AGGTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCTATAATTGTATAAGGTTT-C-TGTTACTTT--C-T--AAAGTATCAGAGC-A---GCTC-CAA----AC
gi|2 : ATATA--ATACTCCA---AAAATA----AA-TTAAGG---ACCATACTCTA-TGTACATTCTACAAGAATGAA--A-------TTCAATTCA-------A-------A--------------CTGTTCTACGGACAAAA-CTAG-A-AAAG-G-TAATTG-AATACGGTTTTCTGAACCTT--------CAA-------AAC--TTAGCTTTAGCAAATTGTT--TA-AAACAAGTTTT----GAGAAAAA------A--------T---GAGTT---T-T--------GAAATGAAATCTAACAAT--TGA---A---AAAA--AAG-C--A--TTTTTA-A-T---------------T--TT-CT--T-CTATT-------GGA-GTAATAACT-TGAC--TATT--------TG-----------------------TAT-----A-ACTTGAAA-AAAAATTA--A-------TATA----------A-CA-TGTA-AGACTG-A-------G---A--GG-CT-ATT------AA--A-----------ACA-GCATTCCA-----G------TTTT------T-----TTGCACAAA--------A-CTTCATAAAA--G---TT--AT-TATGTCG-G-A--GATTTTGAAAAATCGGAGGAT---GGTCCAT-TT-CAACTAAGTG--T--TGTGA-A-AAGAGTTTTTA-----CAAG--TAAGTTTG-AGGTTAATAG----ACCTTTGTAAAG----TCTTAAAATGATACAAATGAAAACTACAA-AATTTT------G--A--AAATAC---A-A-------ATTTTAGGGCAAAA-AC---TA----T----T---TTTA--AA-ATATGCGTTTGTTTTT---TAATG--TAA------ATTT---AAAAAAAATACAGTATA--TAT-------TT--GGGCC---AG-TT-TTGCTTTTAA-ACA-TAGTGCCCATATGTGTGATAGCATT-C-T-----TTTATAATAAAAAATATAAGAGC-A---GCTC-TAA----AC-TGTT-TT-T-G-AAAC-TA--TACA----TACA
gi|20 : tagaagttttatattaataacacaaggttacacatttaaaaaagtgtgttatatatacacttttaaatgtaatgaccaatccattaaaatattatgtgtattatttcataagcctgtatgtactaaggtttccaatgccaACAA-AATTTT------G-AA--AAACAT---A-A-------ATTTTAGGGCAAAT-TC---TG----T----TA--TTTTTAAA-AAATGCGTTTATTTTTA-ATAATGTATAA------ATTagcgtatattattctaggatt
gi|3 : C-A---GCTTTCAAGCTTACTTGCTGTT-TAA-CAGC-T-----CA----TATTC---CA---C---A--TGTTTGAGC-CTGTGTGGTTCCAGCTAAGAATAGAAACACTGTCAAGTCTCTGAATAGGGGTAGGGATCCTCCGAATGGGTGTTATATTCAt
gi|4 : aatgcaaatcttaaaaaaagatttaccaattatatgatttgttttgtgctcctagtctatttgctgtttaacagctcataatgcacatttttgtttttattttattttattttatttcaaagatatatttatataatcaagtttataatttgtctACA-TA-ACTCCACCAAAAATA----AA-TTGAGGCA-A---TACCCTT-TATAAATTCTAC-----TGAA--C-------T-------A-------A-------A--------------CTATTTTGTAGACATAC-TCAG-A-AA-G-G-TATTTG-AAAACGTTTTTTTGAACTTTGCCAT---TGA--GT--TAAC--TTGGCTTTTGCAAATTCTT--AAAAAATATATTTT----GA----AA------A--------T---G--TT---T-T--------AAAAT------------T--TGT---TTTTAAAA--TAT-C--A--TTTTTA-A-CC----GAA-AT-G--T--GT-CC--T-GTATTAGAATAAGGA-GTAATCATT-TGAT--TATA--------TG--GTCAATAA-A-----------TGT-GTAAA-ATTTGAAA-ATAATCTG--A-------AGTT----------G-GA-TGTA-TGA-TAAT-------T---A--GC-AT-TTT------AA--A-----------ACG-GTAT---------A------TTTT------T-----TCAGACAAT--------G-GCCC-----A--G---CTCAAC-T-----G-G-T--G-TTGTGAAA---------AT---CTTT--T-TTACAAATTAATT--T--TTTTTTA-AAGA------A-----CATGGTTAAATCTA-AAATTGATAA----A----TAAAAAC----TTTTGAA-----------GAGAAAAACAA-AATTTT------GTAA--AAATAT---A-A-------ATTTTATGGCAAAA-AA---AG----T----T---TTT---AA-ATATGTGTTTATTTTTT-ATTTTG--TTA------ATTC---AATA---------TATA--TTT-------GG--GGTTT---AA-TA-TTGTTTTTTA-ATA-TATTGCCCATATTTGTTAAAGCATT-G-T-----TTTTGCAT--AAAGTACCAGAAA-A---GCTC-CAA----ACTTGGT-TT-TAA-AAAA-TA--AACA----TATAC---CA---TGGGA-A-GT---AGC-CCGTGTGGTTCCGGCAAAGAATAGAATCACTGCCGA-TCTCTGCAGAGGGGTAG---------GAATGGGTGTCGTGTTCAttttatcattttttgtcatgttcgctattgtggtttaattaccttaccaaccccctgtgtggttccagggagccatatgagtgatggcaagaataggatcactgtggctcatgcacgtcttaggaggtgacaattttagtaatatgatagaatttgctggaactctgcagttctgcaggtatcaaagttctaggatcattctacatattcatttgttgatgtatttttttaaatctttatgttaatttgttgattatagagtgaacatagaatcttcatccctgttggcatcaaatagcctataatgtgctggtacgccataaaaccatattcattcattcattccacatctttgtttttattatgtttaatattattatacacttgtaatctagaagcattgtaatttggctttatgctaaataaaagttgttgatgttgtttttttatatataaaagtatcaaaattaaataaaactaaaattatatatttataatataaaaggttgtataaaaatattttttttcaaattat
gi|5 : catgaTA-TATACTAT-T--AAAATGTTATAA-T--ATG---G---TACCCTT-TATAAATTTCGC-----TGAA--C-------TCAAAATCA-------A-------A--------------CTGTTCTTTGGACAACC-CTAG-A-AAAG-G-TAATTG-AAAATGGTTTT---AGCATTGC--T---TAA--GA--TAAC--TTCGCTTA---GAGTTATG--TACAAATATTTTTT----AA----AACAAA--A--------T---GAATT---T-T--------AAAAT------------T--TGC---T---AAAA--CAG-T--A--TTTTAA-A-CCGA--AAA-ATAG--T--TTTCT--T-ATATT-------GGA-GTAGTAAAT-TCGT--CAT---------TG---TCAATTA-A-----------TAT-GTAAT-ATTT----------TTG--A---------------------A-GA-T----AAA-TG-T-------T---G--GA----TTT------AA----------------G-ATAT---------A-------------------------GA------------G-GTCG-----A--G---CT--A--T-----G-A-AAAG-CTGT--AT---------AC---GTTT--TATTAGTGTTTAGTTAAG--TGTTG-A-AAAA------AAAACACATGGTTAAATATT-AAATTGATGA----A----TAAGGAA----TTTTAAA-----------TAAAAATACCA-AATTTTCCCCCAA-AA--AAACATTAGG-A-------ATGTTAA---AAAA-AC---TG----T----TACTTTT---AA-ATGTGCATTTAGTTTTG-ATAATA--TTA--------TT---AAAA---------TGTAAGTTT-------TC--AGGTT---AC-TA-TTGCTTTTGA-ATA-TATTGTCCATACCTGTATTAGCATT-T-T-----TTTGGCAT--ATAGTATCAGCAT-A---GCTC-CAA----TCTTGTT-TT-TAA-AAAC-TATGCACACTAGTATAC---TA---T---aataaccaaacctttgcttgctat
gi|6 : tatgcagagacaatatttttaaatttatatatatttt-TACAATCCAC--AAACTA----AG-TTAGG---------ATCATG-TCTAA-TACTAC-----TGAA--C-------T-------A-------ATATTCAAA--------------CTGTTCTGTGGATAAGC-CTAG-TTAA-G-G-TAATTG-AAAACAGTTTTCTGAATC-TGC--T---T-A--GT--TAAC--TAAGCATAAGATAAATCTT--TACAAATACTTTTT----GT----AA------A----------------T---T-T--------AAAAT------------T--TGT---T---AAAA--AG--C--ATTTTTTTA-C-CCAAAAAAA-AAAG--T--TT-TT--T-GTATT--------GATGTCATA------AT--TATG--------TG--CTCttctatgagaaataaattaatagatggtccttatcaaatatttagta
gi|6 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagTAAATTTT-AAATTGATGA----A----TAGGATT----TTTTAAA-----------TAAAAAAACAC-AAATTT------G-TA--AAATAA---A-A-------ATTTTGGGGCAAAA-GC---TGTTATT----T---CTT---GA-ATATGCCTTTATTCTTA-ATAAT---T-A------GTTT---AAAACCCT-----TAT---TTC-------TT--GAATT---GA-TA-TTATTTTTCA-ATA-TATTACTTATCCTTGCTTAAGCATTAT-T-----TTTGGCAT--AACGTATCAGAGC-A---GTTC-AAA----GTTTGTT-TTAAAA-AAACGTA--CATATTTTTATAC---GAT--T---ATATGT---AACACCGTGGGGtccacataggaggaaataaacaatcaaatcaaactaaattttaaattgatgaataggattttttaaataaaaaaacacaaatttgtaaaataaaaattttggggcaaaagctgttatttcttgaatatgcctttattcttaataattagtttaaaacccttatttcttgaattgatattatttttcaatatattacttatccttgcttaagcattatttttggcataacgtatcagagcagttcaaagtttgttttaaaaaaacgtacatatttttatacgattatatgtaacaccgtggggaataaattcttgattaattttgtggagtataatatata
gi|7 : tagcattaaataaaaaacaaaacatgtgaaagtactacttttggtgttcacttgaagaagacatttttttcactgatacatacacatatactacaccagtacaatccacaaactaagttaggatcatgtctaatactactgaactaatattcaaactgttctgtggataagcctagttaaggtaattgaaaacagttttctgaatctgcttagttaactaagcataagataaatctttacaaatactttttgtaaatttaaaatttgttaaaaagcatttttttacccaaaaaaaaaagttttttgtattgatgtcataattatgtgctctccacataggaggaaataaacaatcaaatcaaacTATA-TATACTC-----AAAATA----AAAGCAAAG---G----ACCAAAATATATATTCTAC-----TGGA--CAAAAATTC-------A-------A-------A--------------CTGTTCTGTGGACAAACTCTAA-A-AA-G-G--AATTG-GAAGTGATTTTCTGAACTTTGC------TAA--GTTATAAC--TTGGCTTAAGAGAATTCTT--AACAAATATTTTTTTAACAA----AAAC----A--------T---GAATT---T-C--------AAAAT------------T--TGT---T---AAAA---------A--TACTTACC-CC----AAA-ATAGT-T--TT-CTAAT-ATATT----T--GT--GTAATAAAC-TGATTGTATA--------CA--GCCGATAA-AAGATATTTTATTAT-GTAAG-ATTTGAAA-ATAA------A-------T---------------AA-TG---GG---A-C-------C---A--GC-AG-TTC------AG--T-----------TCA-GCA----------G------TTTT------T---------ACAAT--------A----C-----A--G---TT-----T-----G-A-T--G-TTG-AAGA---------AC---CATG--G-TTAAACCTTAAAT--A--TATAA-ATAAGA------A-----T----TTATGTCTT-AAG-----------------AAAAACTTTTTTTTTTA-----------TAAAA--ACAATAATTTT------G-AGGCAAA------A-A-------CTCTTA--------------T-----T----T---TTT---AT-GTATGCGTTTATCTTTA-ATAATG--TAA------ATTA---AAAA---------TAAA--GTT-------TTA-GGGTT---AA-TA-ATGTTTTTGA-ATAGTGTAGC---------TATCAG-------T-----TTTGG--G--AAAGTAAAAGTGC-A---GCTC-CAA----ACTTGTT-CT-TAA-AAAC-Taataaattcttgattaattttgtggagtataatatata
gi|8 : ctatcattaatcaaagaaaaaatgtgtaaaaaccgtaccaaagaagacactatcacagtgtcaggcatattcTG-TGTATATTCTAC-----TGAA--C-------T-------A-------A-------AATACATTTAA----CTATTGTGTGGTC---C-CTAG-A-AA-A-GATAATTG-AAAATGG-------AACCTTGC--TAATTAA--GT--TAATCATTA--TTCA---AATTATTCTTACAAATATTTT-T----GA----GA--------------------------------------------------------------------AAAA--AAT-TGAA--TTTTTA-A---------A-AT-----------T--T-GT--T----T--GAA---AA-AAATCTGATGTTAGA--------TG-------TAAGA-----------TTTAGCGGATATTTACAGCATA-CCTG--A-------TTTTTTAACACCAAA-AA-TGTATACA-TT-T-------T---A------T-TTT------GG----------------G-G------------A------TTTT------TGAAACTTGGAGAAT--------G-TTCC-----A--GCAATTCACCAG-----G-G-T--G-TTGGGAAA---------AC---AGTT--T-----GAT--AGT----------G-A-AAGA------A-----CAAGGCTTAATTTT-AAATGGATTA----A----TAAGAAC----TTTTCAA-----------GAAAGCTACAA-AATTTT------G-A-----------------------------GGCAAAA-AT---TG----TAGTTT---TTT---AA-TTATGCGTTCGTTTTTA-ATAATG--TAA------ATTA---AAAA---------TATA--TTT-------TTTAGGTTT---AAGTA-TTGTTTTTGA-ATA-TATTGCTCATACTTGTATCAGCATT-C-T-----TTTGACAT--AAAGTACTGGAGC-A---GATC-CAA----ACTCATT-TT-TAA-AAAC-TA--TTCA----T
gi|9 : tacactactcaaaatttgataagaatcatgccatgatTTT----GA----AATCT---A------------A--TT---T-T--------AAAAT------------T--TGT--------AAA--AAT----A--TATTTA-A-TCCG--GAA-ATAG--T--TTTCT--T-GTATT-------GGA-GTAATATAT-TTAT--TATA--------TG--GTCAGTAA-A-----------TAT-ACAAA-AAATGAAT-ATAAGCTG--ATGTTAGATGTA----------A-GACTGCA-TTA-TA-TGTGAAAAC---A--GC-ATATTTCACACCAA--ATTGTATAGTTTACG-GTTT---------A------TTTTGAAATTT-----TTTGAAAATCGAAGTGTG-GTTC-----A--A---TTTAAT-T-----G-G-T--G-TTGTAAAA---------AC---AATT--T-TTACAATTTAATT--TAATGTTG-A-AAGA------C-----CATAATTATATCTT-AAATTGA--A----A----TAATAAA----TTTTAAA-----------GAAAAATACAtttaaagtatcttctataggatattaatcaaattttgagtagtatgatattg
gi|9 : ataaattctactggccaaactgttcggtggacaaactcataaaattgaacgaaaacgattgtttgaaccttgcA-TA-TTGTTTTAGA--TA-TGTTTTCAATACTTGTG---GCAGT-C-A-----TTTTGCAT--AAAGAATCAGAGC-AGGTGCTT-CGA----ACTTGTT-TT-TAA-AAAA-TA--TAtttgcgatttcaattacattgttaaatatatttatacttattttttttttgggggggtggggggggggggggtaaaacattatattgttttagatatgttttcaatacttgtggcagtcattttgcataaagaatcagagcaggtgcttcgaacttgtttttaaaaaatataatctatgggaaatgaatgacatggctcttattt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCAAATAACCCACATATTTGCGAAAAAAATGTTTTTAAAAATTATTGCTGTGAGCATATAGAGAAATTGACGAGGTTTATC
Unaligned ( gi|22 ): TATATACTAGAACACCATTTTAATGTAAAATCCATGGGAAATAAATTACATGTTCCTTAACTTATTTTGTGGAGTA