lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 55 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 22 1 1 4444 11 777777777777777 222222222222222 33333333333333 33 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 11111 444444444444444444444 111 888888888 222 4
lowQualScore : 55 6 0 6 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 7 5 6 33 6 6 7 6 6 7 6 4444 6 6 11 777777777777777 5 0 22 999999 888888 4 888 1 0 222222222222222 44 44444444444444 5 11 2 55 444 3 0 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 999 666 0 22 4 777 11111 4 0 7 4 555555555555555555555 66 222 444444444 333 0
lowQualScore : .. . . . . ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ . . . . .. . . . . . . . .... . . .. ............... . . .. ...... ...... . ... . . ............... .. .............. . .. . .. ... . . . ...................................................................................... ... ... . .. . ... ..... . . . . ..................... .. ... ......... ... .
lowQualScore : 00 0 0 0 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 0 0 00 0 0 0 0 0 0 0 0000 0 0 00 000000000000000 1 3 11 111111 999999 8 333 0 5 222222222222222 22 66666666666666 0 11 4 66 111 2 5 7 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 444 7 00 4 333 11111 4 1 2 4 222222222222222222222 55 000 000000000 000 0
consensus : AGTT--GTGATA-CTCCATTGTG---ATTTGGCAAATATGACTTACAAAATATTTAAAATTGGGAAGTGGTTACTGGNACATT--AGCGTGCTTT------TAAAAC-CTTAAGTNAAATT----T-CTAAGTATAAAA-G-GGC---AAT----T-CTATTCG-TC------G---NAAAACAN-AGTTATCTCACTTG-GCCNNTGAGTCTTACTGGTAGT---GAAGAC--A-CGAGATATTCCA-TCGATGNACGACTAGTAA---TAACCGAGATATGAG-----C----AAATNTT--CTAAGTAT-AAAA--CGGCCA-TAAT--TCT-GC--CTAAAATCT-ATT-CAAGC-AG---TACCCCATTT-GTCCCCTTGTGTG-CTCTTA--ATGGC----AANA--CAC---A-G--T-G-AAATTTCATTGATGTATGANTAGTA---GTTACCGA-----GATA---GGA-CTAATTT-----CAAACTTGAAC-AATTTTTTNTA-------A--AT-TA-AAAG---GGCCATAATT-CTGC--CTAAAA-NNAA----AA-GT-GAGTTATC------CC-------ACTTG--TCCCC------------TNGAGANCTNTGAGGCG------GTGG-T-AC-GAGATG--TG-AA-GCGT-NCTTAATAACTTTAACTGAAT-TT-T---------TNTA---A-GTATAAAAGGG-C--C-ATAAATTCTGCCTNAAATCAA-----AA-NGGAGTTATCCCACTTGTTGTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCAC-TGGGCA--AAG---CA-----ATTCTCTAAATGCTTAT--AGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTNNNTGATGGTAGT--GAAGACACACGNGA-GTA-TT---ATTGATGTATGAGTAGTG---GTTACCGAGATA-T----GAGCATGCCTAAAAACTTCAAACGA-A----TTTTC--T-NAG----------TAT-AAAA-GGGGC-CAT--AAT---TCTGCCTAAAATCAAA-AT---G------AGTT-ATC---CC--AC--------TT--------G--------AG----------TC---C--------C-----CTTA-ATGATAGT---GAAGACACACGT-GA--AGTT-----TC-GTTGAT-GTATNNG-T------AG-------TGATNNCCNANATACGAAGCTAGCTAGCCAACAAAC-TTTAACCAA
Reference ( gi|1 ) : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACATGGT-----GAATATCCAA---TGAAAAGTG-----TGGG-TATTTAAGAGTGCATT------TAAAACATTTAAATCAAATT----T-CTATGTATAAAA-G-AGC---AAT----T-TTATTCT-TC------G---TAAAACAG-AATTACCGGACTTGTGCCACTAA-TGGTACTGGTAGT---GGAGAC--AGTGTGGTATTTCA-TTTATGCATGTCTAGTAA---TAACTGAGATGTGAG-----C----AAATTTT--CTTAATATTGAAA--GGGCTC-TAAT--GCT-AC--CCAAAATCTTATC-CAAGC------TACCCCAAAT-GTCCACTTGAGTG-CTGTTA--ATGG-----AAAA--CAT---AAGTGT-GCAAGTTTCATTGATGTATGACTAGTA---GTTACAAA-----CATA---AGATCTAATTT-----TAAACTTGAACCAATTTTTTTTA-------A--AT-TA-AAAA---GGCCATAGTT-CTGC--CAAAAA-ATAA----CA-GT-GAGTTAAC------CC-------ACTTG--TCCCC-----------ATCGAGAGCTATTA-ACG------GTGG-T-AC--AGATA--TG-AA-ATGT-CCTTGATAACTTTAACTGAAT-TT-T---------TTTA---A-GTATAAAAAGG-T--C-TTAAATTCTGCCTTAAATCAA-----AA-GGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAAT--GAAGACACATGTGAAGTA-TC---ATTGATGTATGGGTAGTG---GTAACTGAGATA-T----GAGCATTCCTAAAAACTTCAAATGA-A----TTTTC--T-TAT----------TAT-AAAATGGGGC-CAT--AAT---TCTACCTAAAATCAAA-AT---G------AGTA-ATC---CA--AC--------TT--------G--------AG----------TC---C--------C-----CTTA-ATGATAGT---GAAGACACACAT-GC--AGTT-----TC-ATTAAT-GTATTTG-T------AG-------TGATGACTGACATATAA---TAA--GGCCTAAAAACTTTTAACCAAACAAGGATATCAGTAGAACTGATGGATGCTCCCTGAACAAGTGTTTGATTGTGAAGCG
gi|2 : AGTT--GTGATA-CTCCATTGTG---ATTTGGCAAATATGACTTACAAAATATTTAAAATTAAAAAG---------GC-CAT-----AATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTT-CTAGGTATAAAA-GGAGT---CATAAAAT-TTGTTTG-TCTAAACTG----AAAATAT-AGTTATCTGACGTAAGCTCCTGAGTCTTTTTGATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGTTGCC----AAATATT--CTAAGTAT--AAA--TGGTCA-TAAT--TCT-GC--CCAAAA------C-CAAGA------T----CAAATAGTTCA
gi|3 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtact---TGGGAAGTGGTTACTGGGATATT--AGCGTGC-CT------TATAAC-TTTAA-TAAAATT----TTCTAAGTATAAAA-C-GGC-----T----CGTTATTCTGTC------G---AAAATCA--AATTGCatattttcgcttata
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgTT------TAAA-CACTTTAATCAAA-T----T-CTAAGTATAAAAGG-GGC---AAT----A-CTA--CG-GC------A---TAAAACAATAGTTATCTCCCTTGTACCTATAA-----AC--GTAGT---GGAGAT--Aaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacacgaagtttcattgatttaaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|8 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataaggttatgacactattttactttaatactgaacaaacaaattaattttcaattaaaaactgatactatattcagagatatgggcttcATGTATAAAG-G--GCCATAAT----T-CTA--CT-TC------AAGCCAAAACAG-AGTTATCCCACTTG-GCCA
gi|7 : cacttgcccatttgatggtagtgattattgacagcggacaagtggctaccgagatacatgcgagtatgcctaaagactttgaaggaattttctgtatatgtttaACTGGTAGT---GAAGAC--A-----------CA-ACGATGAACGACTAGTAACTGTAACAGAGGAAGGAT-----CTTATAAATCTGAACTTAGTAT--AAACGGGGCCA-TAATCTGCTTACAATTAAAATCT-------AGT------TACCCCATTT-GTCCCCTTGTGTG-C---TA--ATGT------TCA--CAC---A----T-GGAAATTCCGTTGCTGTGTGGGTAGTA---Gt
gi|19 : TTTTA-TTGATGTATGGGTAGTAA---TAACTTAGATATGAG-----gc
gi|3 : tggtagttagcatacacat----AAATTTT--CTAAGTAT-AAAA--CGGCTCGTTAT--TCT-GT--CGAAAATCAAATTGCAAACCAG---TATCCCATTT-GGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCAC---ACG------AAGTTTCATTGATTTAaatgcaaaaacaatg
gi|5 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataAATATCAAAA--TAGCCA-CAAT--TCT-GC--CT------TTATT-CAAACAAAAGTTACCCCACTT-GCCTTCTTGAGTG-TTCTGA--ATGGCTGTGAAGA--CACTTGAAATGTTACAGATGT-ACT--TGTATTAACAGTT---GTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCA-------A--GTGTA-CAAG---GGCAACAATT-TTGC--CTGAAT-TTAA----AACGT-GAGTGATC------TC-------ACTTG--TCTCT-----------CTC-AGGTCCTTGA-GTG------CTGG-TGACA-AGATG--TG-TA-ATGT-aagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|2 : ATTGATGCATGACTAGTA---CTTACCAA-----GATA-------------------TGAGGTTG--CCAAATATTCT---------A--AG-TATAAAT---GGTCATAATT-CTGC--CCAAAA-accattg
gi|7 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaGATGAACGACTAGTAACTGTAACAGA-----GGAA---GGATCTTAT--------AAATCTGAAC---------TTA-------GT-AT-AA-ACGG---GGCCATAAT--CTGC--TTACAA-TTAA----AA-TC-TAGTTACC------CC-------ATTTG--TCCCC------------TTGTGTGCTAccaagatcaaatagttcaatattttcgcttata
gi|17 : actggtagtgaagacacaacAATTT-----CA---TTGAA---ATTTTGTACA-------A--AG-TA-AAAAAGGGGACATAATT-CTGC--CTAAAA-TCAA----AA-TG-GAGGTACC------CC-------ACTTG--Tatgttcacacatggaaattccgttgctgtgtgggtagtaggc
gi|9 : aTT-----AAAACTTAAAC--ATATATTCTA-------AGTAT-TG-AAA----GGCCATAATT-CTG---TATAAA-ATCA----AA-ATAGAGTTATC------CA-------ACTTG--GCCCC------------TGGAGACCTCTTtgttaat
gi|8 : gacatatgtgagcatgccTTGAAGGAATTTTCTGTATATGTTTA--ATGTATAAAG---GGCCATAATT-CTACTTCAAGCC-AAAA----CA-G---AGTTATC------CC-------ACTTG--GCCtttggtcaagaacactcacatgaagttaaaattatgtatctgttagtg
gi|20 : cacttgcccatttgatggtagtgattattgacagcggacaagtggctaccgagatacatgcgagtatgcctaaagactTTTCTA-------A--GTATG-AAAG---GGCCATAAATACTGC--CTACAATAAAA----TA-G--GAGTTATC------CC-------ACTTGGCTCCCC-----------at
gi|3 : -TA-AAAG---GACCACACGC-CTGC--CTAAAA-TCAAAATGCA-GT-GATTTCACTTGTCCCCTGACTTTACTTG--CCCACTTGATATGGTAATGAAGAGATATGAGACGTGGGAAGTGG-TTACTGGGATA--TT-AG--CGTGCCTT-ATAACTTTAA-TAAAA-TT-T---------TCTA---A-GTATAAAACGGCT--CGTT--ATTCTGTCGAAAATCAAATTGCAA-ACCAG-TATCCCATTgag
gi|8 : aagta------GTGGCT-ACCGAGATACATGCGA-GTAT-GCCTAAAGACTTTGAAGGAAT-TT-TCTGTATATGTTTA---ATGTATAAAG-GG-C--C-ATAA-TTCTACTTCAAGCCAA-----AA-CAGAGTTATCCCACTtggctccttgtgtttcttttattatagtaaaatgcacacgaagtttcattgatttaaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|2 : cacttgcccatttgatggtagtgattattgacagcggacaaG-T-AC---GAC---TG-AA-GCAT-GCTTTATAAATCTAACT--AT-AG-T---------TTTA---A-GTATAAAAAGG-tggccat
gi|9 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaact-AC--ATATG--TG-AGCATG--CCTTAA-AACTTAAAC---AT-ATAT---------TCTA---A-GTATTGAAAGG-C--C-ATAA-TTCTGTATAAAATCAA-----AA-TAGAGTTATCCgatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|5 : gAACTTTAACC-AATGTT-T---------TGCA---A-GTGTACAAGGG-CAAC----AATTTTGCCTGAATTTAA-----AACGTGAGTGATCTCACTaacttggcccctggagacctctttttggtcaagaacactcacatgaagttaaaattatgtatctgttagtg
gi|17 : aatatcaaaatagccacaattctgcctttattcaaacaaaagttaccccacttgccttcttgagtgttctgaatggctgtgaagacacttgaaatgttacagatgtacttgtattaacagttgtttctgatgtctcatatacaaagctagctagccaacaAAATTTCATTGAAA-TT-T---------TGTACAAA-GTA-AAAAAGG-GGAC-ATAA-TTCTGCCTAAAATCAA-----AA-TGGAGGTACCCCACTTGTTGTTAATtgtctctctcaggtccttgagtgctggtgacaagatgtgtaatgtaccattg
gi|16 : T-T---------TATG---A-TTATAAAAGGG-G--C-CATAATCTTGCCTTAAATCAA-----AA-TGGAGTTGTC
gi|20 : T-T---------TCTA---A-GTATGAAAGGG-C--C-ATAAATACTGCCTACAATAAA-----AT-AGGAGTTATCCCACTtaacttagcccattgatctccttttaatgatagtgaatg
gi|5 : AATTCTGCCTTTATTCAA-----AC-AAAAGTTACCCCACTtggctccccgag
gi|6 : aatatcaaaatagccacAGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCAC-TGGGCA--AAG---CA-----ATTCTCTAAATGCTTAT--AGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTtgccttcttgagtgttctgaatggctgtgaagacacttgaaatgttacagatgtacttgtattaacagttgtttctgatgtctcatatacaaagctagctagccaacaaactttaaccaatgttttgcaagtgtacaagggcaacaattttgcctgaatttaaaacgtgagtgatctcacttgtctctctcaggtccttgagtgctggtgacaagatgtgtaatgtaccattg
gi|2 : ttcTGATAGTAAG--GAAGACTCACGAGA--TA-TTCCAATTGATGCATGACTAGTA---CTTACCAAGATA-T----GAG-GTTGC---------CAAATA---------TTC--T-AAG----------TAT--AAAT--GGT-CAT--AAT---TCTGCCCAAAACCAAG-ATC--A------AATA-GTT---CA--Atatcttggtaaagga
gi|3 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtcttttATGGTAAT--GAAGAGATATGAGACGT-----------------GGGAAGTG---GTTACTGGGATA-T----TAGCGTGCCTTATAACTTTAATAAA-A----TTTTC--T-AAG----------TAT-AAAAC--GGCTCGT--TAT---TCTGTCGAAAATCAAA-TT---GCAAACCAGT--ATC---CC--AT--------TT--------G--------GC----------TC---CTTGTGTTTC-----TTTT-ATTATAGT----AAAATGCACAC-GA--AGTT-----TC-ATTGAT-TTAtattttcgcttata
gi|12 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatATGATAGT--GAAGACATAAGTGAAGAC-GT---ATTGTTGTATGACTA--A---GTAACTGAGATATT----TACCAGT--TAAAGAATTTAAACCAGA----TATTC--G-GAA----------TAT-AAAA-GAGAC-CAT--AAC---Taagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|7 : TGGTAGT--GAAGACACA---------------AC-GATGAACGACTAGTAACTGTAACAGAGGAA-G----GA----TCTTATAAA--TC---TGA-A--------C--T-TAG----------TAT-AAA-CGGGGC-CAT--AA----TCTGCTTACAATTAAA-ATC--T------AGTT-ACC---CC--AT--------TT------------------G----------TC---C--------C-----CTTGTGTGCTAAT---G--TTCACACATGGA--AATT-----CC-GTTGCT-GTGTGGG-T------AG-------T
gi|19 : acTGGTAGTTAGCATACACATTT-------TT---ATTGATGTATGGGTAGTA---ATAACTTAGATA-T----GAGAATGC--AAAAACaggc
gi|10 : GTAGTT---ACTGACATATGAGAAGTG---ATTACTGAGAAA-C----GAATATGCCTCAAAACATAAAATG--A----TTTTC--T-T-----------------AAATGATAC-CAT--TAT---CCTGTTTAAAaatg
gi|18 : GTA-T----ATAAATGTATGAGTAGTG---CTTACTGAGTTA-T----GTGTATGCTTAAcatagttgacccacttggc
gi|8 : acatttatattcatcaatAGTG---GCTACCGAGATA-CATGCGAGTATGCCTAAAGACTTTGAAGGA-A----TTTTC--TGTATATGTTTAATGTAT-AAA---GGGC-CAT--AAT---TCTACTTCAAGCCAAA-ACA--G------AGTT-ATC---CC--AC--------TT--------G--------ttgctttaaccaaa
gi|4 : cacttgcccatttgatggtagtgattattgacagcggacaGAGATA-T----GGGCTTCTTTAAACACTTTAATCAA-A------TTC--T-AAG----------TAT-AAAA-GGGGC-AAT--ACT---ACGGCATAAAAC---A-AT----------AGTT-ATC---TC--CC--------TT------------------G----------TA---C--------C-----TATA-AACGTAGT---GGAGATAgccat
gi|9 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataaggttatgacactattttactttaatactgaacaaacaaattaattttcaattaaaaactgatactatattcaATG-T----GAGCATGCCTTAAAACTT-AAACAT-A----TATTC--T-AAG----------TATTGAAA---GGC-CAT--AAT---TCTGTATAAAATCAAA-ATA--G------AGTT-ATC---CA--AC--------TTGGCCCCTGG--------AG----------AC---C--------T-----CTTT-TTGGTCAA---GAACACTCACAT-GA--AGTT-----AA-AATTAT-GTATCTGTT------AG-------TG
gi|2 : gacatAAACTT-AAGTTA-AATTATTTTC--T-AGG----------TAT-AAAA-GGAGT-CATAAAATTTGTTTGTCTAAACTGAAA-AT---AT-----AGTT-ATC---TG--AC--------GT--------A--------AG----------CT---C--------CTGAGTCTTT-TTGATAGTAAGGAAGACTCACGA-GA--TATT-----CCAATTGAT-GCATGAC-T------AG-------TACTTACCAAGATATGA---
gi|17 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcAAATTTCAT-TGA-A----ATTTT--G-TACAAAG------TAA-AAAA-GGGGA-CAT--AAT---TCTGCCTAAAATCAAA-ATG--G------AGGT-ACC---CC--AC--------TT--------G--------ggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|14 : GA-A----GTTTCATT-TATG---------TAT-AAAA--GGG----------------ACCCAAAATCACA-AT---G------ACTTTATC---CC--TA--------TT--------G--------AG----------AC---C--------C-----CT-A-ATGGTGAT---GAACACAAAAAT-GC--AGTT-----TT-GCTGAT-Gttgttaat
gi|16 : TTTA--T-GAT----------TAT-AAAA-GGGGC-CAT--AAT---CTTGCCTTAAATCAAA-ATG--G------AGTT-GTC---TA--AC--------TT-----------------AGCCCATTGATCTC---C--------T-----TTTA-ATGATAGT---GAA
gi|20 : TTTC--T-AAG----------TAT-GAAA--GGGC-CATA-AAT---ACTGCCTACAAT-AAA-ATAG-G------AGTT-ATC---CC--AC--------TT--------G--------GC----------TC---C--------C-----Ctg
gi|5 : ----------TATCAAAATAG--C-CAC--AAT---TCTGCCTTTATTCAAACAA---A------AGTT-ACC---CC--AC--------TT--------GCCTTCTTGAG----------TG---T--------T-----CTGA-ATGGCTGT---GAAG--ACACTT-GA--AATG-----TT-ACAGAT-GTACTTG-TATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAAC-TTTAACCAAgag
gi|11 : aa----------TAT-AAAA-ATGAC-CAT--AAT---TCTGA-TGAAATTAAA-AC---AGA----AGCT-ATCAGCCT--CC--------TT--------G--------AG----------TG---C--------C-----CCAA-ATGACGAC---AAAGGTACATTT-GA--AATTTCATGTC-ATTGAT-GTATTtgttttgcaagtgtacaagggcaacaattttgcctgaatttaaaacgtgagtgatctcacttgtctctctcaggtccttgagtgctggtgacaagatgtgtaatgtaccattg
gi|13 : gT-AAAA---GGC-CAT--AAT---TCTGCCTATATTCAAA-ATAGCG------A-TA-TTT---CA-------------T--------G--------TG----------TCTTTC--------T-----CCTA-GTGAAAGT---GCAGACACA-AT-GTTAAGTT-----TC-GTTGGTAGTA------------AG-------TGAaa
gi|15 : GGT-CAT--AAT---TATACCTAAAATCAAC-AT---G------A--A-ACC---TATCACTTGTAACATT--------G--------AG---------------C--------C-----CTAACATGATAGG---GAAAACATATGT-GA--ATTT-----TC-AATGAA-GTAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111 1111111111111111111111111 11111111111111111111111111111111111 111111111111
lowQualScore : 11 1 11 2222 1111 1 3333 1 111 4444444444444444444444444444444444444 1111 1 33333 1 2222222222222222 22222222222222222 33 666666666666666666666 111 55555555555555555555 1111 1111111111111111111111111 11 11 1111 555555555555555555555555555555555 1 11 44444444444444444444 1 11 1 33333333333333333333333333333333333 4 2 2 2222 4444 1 111 1 111 1 11 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777 4444 2 1 8888888888 222 2 22 7777777777 333 2222 1 333 22222 4444444444444 222222222 22222222 33333333333333333333333333333333333333333333333333333 11111 22222 222222222222 222 4
lowQualScore : 88 3 00 7777 2222 3 2222 3 7 222 6666666666666666666666666666666666666 4 9999 2 1 55555 1 0 7777777777777777 0 77 55555555555555555 2 00 22 666666666666666666666 444 55555555555555555555 1 4 2 8888 4 4 3333333333333333333333333 1 33 4 99 22 2222 5 222222222222222222222222222222222 1 0 0 4 0 99 33 99999999999999999999 0 33 3 1 88888888888888888888888888888888888 2 0 3 1 0 3 2 4 666 3 0 3 4 2222 1 1 2 5555 6 2 000 11 1 1 6 6 1 777 0 66 9 1 2 1 0 33 1 4 9999999999999999999999999999999999999999999999999999999999999999999999999999999 2 2222 0 5 3 7777777777 111 0 2 77 4444444444 2 4 3 000 4 2 4444 2 5 3 4 555 2 666 66666 4 3 4 4 4 4 3 333 3 3 1 2222222222222 2 2 3 9999 1 0 777 7 4 555555555 4 44 3 3 1 33 3 1 88888888 3 44 555 55555555555555555555555555555555555555555555555555555 1 4 0 5 33 44444 22 5 33333 22 77 1 222222222222 333 0
lowQualScore : .. . .. .... .... . .... . . ... ..................................... . .... . . ..... . . ................ . .. ................. . .. .. ..................... ... .................... . . . .... . . ......................... . .. . .. .. .... . ................................. . . . . . .. .. .................... . .. . . ................................... . . . . . . . . ... . . . . .... . . . .... . . ... .. . . . . . ... . .. . . . . . .. . . ............................................................................... . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . ... ..... . . . . . . . ... . . . ............. . . . .... . . ... . . ......... . .. . . . .. . . ........ . .. ... ..................................................... . . . . .. ..... .. . ..... .. .. . ............ ... .
lowQualScore : 33 3 33 3333 7777 3 3333 3 3 777 0000000000000000000000000000000000000 7 7777 0 0 77777 2 0 8888888888888888 8 55 55555555555555555 5 22 00 444444444444444444444 000 00000000000000000000 0 2 5 2222 0 2 8888888888888888888888888 0 88 0 88 22 2222 6 222222222222222222222222222222222 2 8 2 0 0 88 88 22222222222222222222 0 88 3 0 55555555555555555555555555555555555 5 0 0 0 0 0 5 0 000 0 0 0 0 0000 0 0 5 0000 7 0 000 33 0 5 7 7 0 555 0 55 2 2 5 0 0 88 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5555 0 5 0 5555555555 000 0 5 55 0000000000 5 0 0 555 0 5 5555 5 5 0 0 000 5 000 55555 0 0 0 0 0 0 0 000 8 2 4 8888888888888 1 1 7 4444 0 9 000 2 0 555555555 9 88 3 3 9 33 3 0 44444444 3 66 888 00000000000000000000000000000000000000000000000000000 5 0 2 7 11 33333 00 7 88888 00 00 0 000000000000 000 0
consensus : AGTT--GTGATA-CTCCATTGTG---NTTTGGCGAATA-TGA-C--ACAAAATA-TTTAAAATTAAAAAGTG---------T--GGG-TATN--A-GCTT-CTT---TNAAAAC-TTTAAGTCAAATT----TCTAAGTATAAAA-GGG--CA----ATNCTGTTCGTCNNAA-----AAC-ANA-----GTTATCTNACTTGTGCCCCTGA-T---CTTAC----------TGGTAGT---GAAGAC--A-CGAGATATTCCA-TCGATGCGCGACTAGTAA---TNACCGAGATATGAG-----C-TGC---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCA------AAATC-T-AT-T-CAAA-CAG----TACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA---TCG-AAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGATNTCTCATATACGANGCTAGCTNGCCAACAAACTTNAACCAATNTTTTNCAAGTGTANAAGGGCNACAGTTCTGCCNGAANNTAANACGTGAGTNANCCCACTTGTCCCCACCGAGGNCCNTNAGTGCTGGTGGTACGAGATGTGAAACGTNCTTNATAAATTTAACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAAATTCTGCCTAAAAT-CAA--AAAGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-AGTA-T-TATTGACGTATGGGNAGTGGTNACTGAGATAT----GAGCATGCC---TAAAAACTTTAAACGA-ATTTTC---------TNA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G------A-G--TTATC---CC-----A--------C-TTG--------AG----------TC---C--------CCTTA-ATGATAGTGAAGACAC-ACGTGAAGTT-----TCGTTGAT-GTATCTG-TAGTGATGACTGACATATAA---TAA--GGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTG---ATTTGGCAAATA-TGA-CTTACAAAATA-TTTAAAATTGGGAAGTGGT----TACT--GGNACATT--A-GCGTGCTT---TTAAAAC-CTTAAGTNAAATT----TCTAAGTATAAAA-GGG--CA----ATTCTATTCGTCGNAA-----AAC-ANA-----GTTATCTCACTTG-GCCNNTGAGT---CTTAC----------TGGTAGT---GAAGAC--A-CGAGATATTCCA-TCGATGNACGACTAGTAA---TAACCGAGATATGAG-----C-------------------AAATNTT--CTAAGTAT-AAAACGG--C-CATAATTCTGCCTA------AAATC-T-AT-T-CAAG-CAG----TACCCCATTTGTCCCCTTGTG-TGCTCTTA--ATGGC----AANA--CACA---GTG-AAATTTCATTGATGTA--TG-ANTAGTAGTTA---CCGA-G------ATAGGA--CTAATTT-----CAAACTTGAAC-AATTTTTTNTAAAT-TAAAAGGGCCATAATTCTGCCTAAAANNAAAA-GTGAGTTATCCCACTTGTCCCC-TNGAGANCTNTGAG-GC-GGTGGTACGAGATGTGAAGCGTNCTTAATAACTTTAACTGAATTTTTNTA---AGTAT-AAAAGGGC-CATAAATTCTGCCTNAAAT-CAA--AANGGAGTTATCCCACTTGTTGTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTNNNTGATGGTAGTGAAGACACACGNG-AGTA-T-TATTGATGTATGAGTAGTGGTTACCGAGATAT----GAGCATGCC---TAAAAACTTCAAACGA-ATTTTC---------TNA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G------A-G--TTATC---CC-----A--------C-TTG--------AG----------TC---C--------CCTTA-ATGATAGTGAAGACAC-ACGTGAAGTT-----TCGTTGAT-GTATNNG-TAGTGATNNCCNANATACGAAGCTAGCTAGCCAACAAAC-TTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGG-T-----GAATA-TCCAA---TGAAAAGTG---------T--GGG-TATTTAA-GAGTGCAT---TTAAAACATTTAAATCAAATT----TCTATGTATAAAA-GAG--CA----ATTTTATTCTTCGTAA-----AAC-AGA-----ATTACCGGACTTGTGCCACTAA-T---GGTAC----------TGGTAGT---GGAGAC--AGTGTGGTATTTCA-TTTATGCATGTCTAGTAA---TAACTGAGATGTGAG-----C-------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCA------AAATC-TTAT-C-CAAG-C------TACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAA-C------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATAGTTCTGCCAAAAAATAACA-GTGAGTTAACCCACTTGTCCCCATCGAGAGCTATTAA--C-GGTGGTAC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAAGTA-T-CATTGATGTATGGGTAGTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT-G------A-G--TAATC---CA-----A--------C-TTG--------AG----------TC---C--------CCTTA-ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAA---TAA--GGCCTAAAAACTTTTAACCAA
gi|10 : GTAGT-TACTGACATATGAGAAGTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATGA--TTTTC---------T------T-AAAT-GATACCATTATCCTGTTTAAACAT--------------A-G--TTGAC---CC-----A--------C-TTG--------acaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTGA-TGAA-ATTAAAAC-AGA----A-G--CTATCAGCCT-----C--------C-TTG--------AG----------TG---C--------CCCAA-ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTATgc
gi|12 : ATGATAGTGAAGACATAAGTG-AAGA-CGTATTGTTGTATGACTAA--GTAACTGAGATAT----T----TACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATAG------C-G--ATATT---TC-----A-----------TG--------TG----------TCTTTC--------TCCTA-GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT-G------ACT--TTATC---CC-----T--------A-TTG--------AG----------AC---C--------CC-TA-ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT-G------A-AACCTATC---ACTTGTAA--------CATTG--------AG---------------C--------CCTAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TTTA---------TGA-TTAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATGG------A-G--TTGTC---TA-----A--------C-TT---------AGCCCATTGATCTC---C--------TTTTA-ATGATAGTGAA
gi|17 : AAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|18 : GTA-T--ATAAATGTATGAGTAGTGCTTACTGAGTTAT----GTGTATGCT---TAATTGCTTTAACCAA-A
gi|19 : acatttatattcatcaatTGGTAGTTAGCATACAC----ATTT-T-TATTGATGTATGGGTAGTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GTACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTG---ATTTGGCAAATA-TGA-CTTACAAAATA-TTTAAAATTAAAAAG---------------GC-CATA--ATGCTTTCTTCAGTCAAA---CTTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATT-TGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGT---CTTTT----------TGATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGTTGCC-------------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCA------AAACC-A-AGAT-CAAA-TAG----Tttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GGA--CC----ACAC-GCCTGCCTAAA-----ATC-AAAATGCAGTGATTTCACTTG-TCCCCTGACTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG--A---GACGTGGGA--AGTGG---TTACTGGGATATTAG-----CGTGCCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGA------AAATCAA-AT-TGCAAACCAG----TATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA----CG-AAGTTTCATTGATTTA--gctccccgag
gi|3 : ATGGTAATGAAGAGATATGAG-A--------------CGTGGGAAGTGGTTACTGGGATAT----TAGCGTGCC---TTATAACTTTAATAAA-ATTTTC---------TAA-GTAT-AAAA-CGGCTCGTTATTCTGTCGAAA-ATCAAATT-GCAAACCA-G---TATC---CC-----A--------T-TTG--------GC----------TC---CTTGTGTTTCTTTT-ATTATAGT-AAAATGC-ACACGAAGTT-----TCATTGAT-TTAaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgat---TAAAA--TGCACACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATGG------A-G--TTATC---CC-----ACTAAGTCTC-TCG--------AA----------TC---T--------CATTT-ATGGTAGCGAAaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagGTT--ATGACA-CT--ATTTTA---CTTT----AATACTGAACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG--G-GCTT-CTT---TAAACAC-TTTAA-TCAAATT-----CTAAGTATAAAAGGGG--CA----ATACTA--CGGCATAA-----AACAATA-----GTTATCTCCCTTGTACCTATAA--------AC------------GTAGT---GGAGAT--A-tt
gi|4 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagGAGATAT----GGGCTTCTT---TAAACACTTTAATCAA-ATT--C---------TAA-GTAT-AAAA-GGGGCAATACTACGGCATAAA-AC---AAT--------A-G--TTATC---TC-----C--------C-TT----------G----------TA---C--------CTATA-AACGTAGTGGAGATA
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataaggttatgacactattttactttaatactgaacaaacaaattaattttcaattaaaaactgatactatattcaAATATCAAAATAG--C-CACAATTCTGCCT-----------T-T-AT-T-CAAA-CAAAAGTTACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC----TTG-AAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACAATTTTGCCTGAATTTAAAACGTGAGTGATCTCACTTGTCTCT-CTCAGGTCCTTGAGTGCTGGTG--ACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcAC----------TGGTAGT---GAAGAC--A-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGAT-----CTTAT---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAATTAAAATC-T-AG-T-------------TACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA---TGG-AAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA-----------------T-TATTGACAGCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACAG------A-G--TTATC---CC-----A--------C-TTG--------gc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATAG------A-G--TTATC---CA-----A--------C-TTGGCCCCTGGAG----------AC---C--------TCTTT-TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTGgccat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 11 1 11 2222 1111 1 444444444444444 99999999999999999999999999999 222 22 1 2222 1 1 444444444444444444 1 22222 6666666666666666666666 111 55555555555555555555 1111 999999999999999999999999 11 11 1111 33333333333333333333333 1 11 444444444444444444444 11 1 222 3333333 11 222222 1 111 111 2222 1 3333333333 111 111111 1111 1111 1 1 11 2222 1 1 4444444444 222 1 11 3333333333 111 2222 1 222 22222 44444444444444444 1111 111 33333333333333 2 3333333333333333333333333333333333333333333333333 11111 11111
lowQualScore : 88 3 00 4444 2222 3 555555555555555 7 33333333333333333333333333333 6 4 1 333 00 2 8888 7 1 0 0 3 999999999999999999 22 0 1 55555 1 6 0 0000000000000000000000 444 55555555555555555555 666 2 8888 1 4 666666666666666666666666 1 33 1 99 22 2222 4 5 8 0 44444444444444444444444 8 1 0 0 1 0 77 33 333333333333333333333 33 3 1 111 1 7777777 2 66 777777 1 88 11 2 1 3 88 999 11 22 222 8888 4 1 9999999999 1 1 88 777 8 999999 2 1 1 7 0 3 2 0000 4444 8 99 0 0 8 11 4 0 1 1 4444 5 5 1 1111111111 111 5 1 88 7777777777 1 1 1 888 1 1 4444 1 5 1 1 111 1 1 1 66666 1 1 1 1 1 1 2 00000000000000000 6 1 2 1 6 1 2222 1 4 000 6 55 55555555555555 4 4 33 33 4 0 55 4 55 5555555555555555555555555555555555555555555555555 0 5 1 1 6 44 66666 22 6 55555
lowQualScore : .. . .. .... .... . ............... . ............................. . . . ... .. . .... . . . . . .................. .. . . ..... . . . ...................... ... .................... ... . .... . . ........................ . .. . .. .. .... . . . . ....................... . . . . . . .. .. ..................... .. . . ... . ....... . .. ...... . .. .. . . . .. ... .. .. ... .... . . .......... . . .. ... . ...... . . . . . . . .... .... . .. . . . .. . . . . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . . . ..... . . . . . . . ................. . . . . . . .... . . ... . .. .............. . . .. .. . . .. . .. ................................................. . . . . . .. ..... .. . .....
lowQualScore : 33 3 33 3333 3333 3 777777777777777 3 77777777777777777777777777777 7 7 0 333 77 0 3333 3 2 0 0 0 222222222222222222 00 0 0 00000 0 5 2 7777777777777777777777 000 00000000000000000000 555 5 2222 0 2 555555555555555555555555 2 88 0 88 22 2222 6 6 2 6 44444444444444444444444 0 2 8 2 0 0 88 88 222222222222222222222 88 3 0 555 0 5555555 5 00 000000 0 33 77 0 0 7 33 000 77 00 777 3333 0 0 0000000000 0 0 33 777 8 000000 0 0 0 3 8 0 5 8888 8888 0 00 8 0 0 00 4 7 0 0 0000 5 5 0 0000000000 000 0 0 00 0000000000 0 0 0 555 0 0 5555 0 5 0 0 000 0 0 0 55555 0 0 0 0 0 0 5 77777777777777777 7 7 2 0 7 0 1111 7 0 000 0 44 77777777777777 0 0 22 99 0 0 55 0 55 9999999999999999999999999999999999999999999999999 9 0 0 0 7 33 77777 88 7 11111
consensus : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA-TG---------T---GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTCCCC-CC-AGGNCCNTTAGCGCT-GTGGTACGANATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTNACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TTG--------AG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTGN---TTTGGCGAATA-TGAC--ACAAA---AT--ATTTAAAATTAAAAAGTG---------T---GGGTATN----A-GCTTCTTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCAAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TCTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TCGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGATNTCTCATATACGANGCTAGCTNGCCAACAAACTTNAACCAATNTTTTNCAAGTGTANAAGGGCNACA--GTTCTGCCNGAANNTAANACGTGA----GTNANCCCACTTGTCCCCACCGAGGNCCNTNAGTGCTGGTGGTACGAGATGTGAAACGTNCTTNATAAATTTAACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAAATTCTGCCTAAAAT-CAA--AAAGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGNA-GTGGTNACTGAGATAT----GAGCATGCC---TAAAAACTTTAAACGA-ATTTTC---------TNA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TTG--------AG----------TC---CCCTTA-ATGATAGTGAAGACAC-ACGTGAAGTT-----TCGTTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGGT--G---A---AT--ATCCAA---TGAAAAGTG---------T---GGGTATTTAAGA-G-TGCATTTA---AAACATTTAAATCAAA----TTTCTATGTATAAAA-GA-GCAAT----TTTATTCTT-----CGTAAAAC-AGA-----ATTACCGGACTTGTGCCACTAA-TGGTACT--------------GGTAGT---GGAGA--CAGTGTGGTATTTC-ATTTATGCATGTCTAGTAA---TAACTGAGATGTGA-GC---------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCAAAATC-TTAT-C-CAAG-C--------T-ACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAAC-------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATA--GTTCTGCCAAAAAATAACA-GTGA----GTTAACCCACTTGTCCCCATCGAGAGCTATTAACG---GTGGTAC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAA----GTA-TCATTGATGTATGGGTA-GTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT-G--A-G--TAATC---CA-----A--------C-TTG--------AG----------TC---CCCTTA-ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|10 : ----GTAGTTACTGACATATGAGAA-GTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATG--ATTTTC---------T------T-AAAT-GATACCATTATCCTGTTTAAACAT----------A-G--TTGAC---CC-----A--------C-TTG--------acaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTGA-TGAA-ATTAAAAC-AGAA-G--CTATCAGCCT-----C--------C-TTG--------AG----------TG---CCCCAA-ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTATgc
gi|12 : ATGATAGTGAAGACATAAGTG-AAGACGTA-TTGTTG---TATGACTA-A--GTAACTGAGATAT----T----TACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATAG--C-G--ATATT---TC-----A-----------TG--------TG----------TCTTTCTCCTA-GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT-G--ACT--TTATC---CC-----T--------A-TTG--------AG----------AC---CCC-TA-ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT-G--A-AACCTATC---ACTTGTAA--------CATTG--------AG---------------CCCTAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TTTA---------TGA-TTAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATGG--A-G--TTGTC---TA-----A--------C-TT---------AGCCCATTGATCTC---CTTTTA-ATGATAGTGAA
gi|17 : AAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|18 : ----GTA-T-ATAAATGTATGAGTA-GTGCTTACTGAGTTAT----GTGTATGCT---TAATTGCTTTAACCAA-A
gi|19 : acatttatattcatcaatTGGTAGTTAGCATACACAT--------TT-TTATTGATGTATGGGTA-GTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GTACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTGA---TTTGGCAAATA-TGACTTACAAA---AT--ATTTAAAATTAAAAA----------------GGCCATA----ATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATTTGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGTCTTTTT--------------GATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGT-T-GCC---------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCAAAACC-A-AGAT-CAAA-T--AG----T-ttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GG-ACCAC----AC-GCCTGC-----CTAAAATC-AAAATGCAGTGATTTCACTTGT-CCCCTGA-CTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG---A--GACGTGGGA--AGTGG---TTACTGGGATATTA-GCGT-G-CCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGAAAATCAA-AT-TGCAAACC--AG----T-ATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA-----CGAAGTTTCATTGATTTA--gctccccgag
gi|3 : AACTTTAATAAA-ATTTTCTAAGTATAAAACGGCT-CGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTT-----------GGCTCCTT-GTGTTTCTTTTATTATA-GTAAAATGCACACGA--AGTTTCATTGA------TT--------T-AAAGGGAC-CATACTTTATAC-TAAAAT-TAA--AATGGAGTTATCCCACTaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttatACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATGG--A-G--TTATC---CC-----ACTAAGTCTC-TCG--------AA----------TC---TCATTT-ATGGTAGCGAAaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacGTT--ATGACA-CT--ATTTTAC---TTT----AATACTGA---ACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG----G-GCTTCTTTAA---ACAC-TTTAA-TCAAA----TT-CTAAGTATAAAAGGG-GCAAT----ACTA--CGG-----CATAAAACAATA-----GTTATCTCCCTTGTACCTATAA-----AC----------------GTAGT---GGAGA--TA-tt
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagAATATCAAAATAG--C-CACAATTCTGCC-----TT-T-AT-T-CAAA-C--AAAAGTT-ACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC-----TTGAAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACA--ATTTTGCCTGAATTTAAAACGTGA----GTGATCTCACTTGTCTCT-CTCAGGTCCTTGAGTGCTGGTG--ACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcACT--------------GGTAGT---GAAGA--CA-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGA-TC-TTA-T---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAAT--T-A-----AAA-TCTAG----TTACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA----TGGAAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA---------------------TTATTGACA-GCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACAG--A-G--TTATC---CC-----A--------C-TTG--------gc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATAG--A-G--TTATC---CA-----A--------C-TTGGCCCCTGGAG----------AC---CTCTTT-TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTGgccat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 11 1 11 222 1111 1 555555555555555 99999999999999999999999999999 222 22 1 2222 1 1 444444444444444444 1 22222 5555555555555555555555 111 55555555555555555555 1111 999999999999999999999999 11 11 1111 33333333333333333333333 1 11 333333333333333333333 11 1 222 3333333 11 222222 1 222222 1 3333333 1 444444444444444444444444444444444 11 111 11 2222 1 1 4444444444 222 1 11 3333333333 111 2222 1 222 22222 444444444444444444444 22222 111 333333333 2 3333333333333333333333333333333333333333333333333 11111 11111
lowQualScore : 88 3 00 333 2222 3 000000000000000 7 44444444444444444444444444444 6 1 1 333 00 2 8888 7 1 0 0 1 999999999999999999 22 0 1 55555 1 6 0 8888888888888888888888 444 55555555555555555555 666 2 8888 1 4 666666666666666666666666 1 33 1 99 22 2222 4 5 8 0 44444444444444444444444 8 1 0 0 1 0 77 33 777777777777777777777 33 3 1 111 1 2222222 2 66 777777 88 1 2 1 222222 3 2 0 6666666 3 888888888888888888888888888888888 2 0 0 7 0 1 11 5 3 444 8 99 8 8 11 1 0 1 1 4444 5 5 1 1111111111 111 5 1 88 7777777777 1 1 1 888 1 1 4444 1 5 1 1 111 1 1 1 66666 1 1 1 1 1 1 2 888888888888888888888 4444 8 0 1 00000 0 111 9 77 666666666 66 4 4 44 33 4 0 55 4 55 5555555555555555555555555555555555555555555555555 0 5 4 1 6 44 66666 11 6 55555
lowQualScore : .. . .. ... .... . ............... . ............................. . . . ... .. . .... . . . . . .................. .. . . ..... . . . ...................... ... .................... ... . .... . . ........................ . .. . .. .. .... . . . . ....................... . . . . . . .. .. ..................... .. . . ... . ....... . .. ...... .. . . . ...... . . . ....... . ................................. . . . . . . .. . . ... . .. . . .. . . . . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . . . ..... . . . . . . . ..................... .... . . . ..... . ... . .. ......... .. . . .. .. . . .. . .. ................................................. . . . . . .. ..... .. . .....
lowQualScore : 33 3 33 333 3333 3 333333333333333 3 77777777777777777777777777777 7 0 0 333 77 0 3333 3 2 0 0 0 222222222222222222 00 0 0 00000 0 5 2 7777777777777777777777 000 00000000000000000000 555 5 2222 0 2 555555555555555555555555 2 88 0 88 22 2222 6 6 2 6 44444444444444444444444 0 2 8 2 0 0 88 88 888888888888888888888 88 3 0 555 0 0000000 5 00 000000 33 0 0 0 777777 7 0 7 0000000 3 999999999999999999999999999999999 0 8 7 3 8 0 88 6 6 000 0 00 8 0 00 0 7 0 0 0000 5 5 0 0000000000 000 0 0 00 0000000000 0 0 0 555 0 0 5555 0 5 0 0 000 0 0 0 55555 0 0 0 0 0 0 5 333333333333333333333 4444 0 8 0 55555 3 777 0 44 444444444 11 0 0 00 99 0 0 55 0 55 9999999999999999999999999999999999999999999999999 9 0 2 0 7 33 77777 77 7 11111
consensus : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC--TCGGGTCTNTTAGCGC-GTGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC--CCAGGNCCNTTAGCGCTGTGGT-ACGANATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTNACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGGT--G---A---AT--ATCCAA--TGAAAAG---------TGT----GGGTATTTAAGA-G-TGCATTTA---AAACATTTAAATCAAA----TTTCTATGTATAAAA-GA-GCAAT----TTTATTCTT-----CGTAAAAC-AGA-----ATTACCGGACTTGTGCCACTAA-TGGTACT--------------GGTAGT---GGAGA--CAGTGTGGTATTTC-ATTTATGCATGTCTAGTAA---TAACTGAGATGTGA-GC---------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCAAAATC-TTAT-C-CAAG-C--------T-ACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAAC-------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATA--GTTCTGCCAAAAAATAACA-GTGA----GTTAACCCACTTGTC-CCCATCGAGAGCTATTAACG--GTGGT-AC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAA----GTA-TCATTGATGTATGGGTA-GTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT-G--A-G--TAATC---CA-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|10 : ----GTAGTTACTGACATATGAGAA-GTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATG--ATTTTC---------TTA-A-AT-GATA-----CCATTATCCTGTTTAAACAT----------A-G--TTGAC---CC-----A--------C-TT--------Gacaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTGA-TGAA-ATTAAAAC-AGAA-G--CTATCAGCCT-----C--------C-TT--------GAG----------TG---CCCCAA-ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTATgc
gi|12 : ATGATAGTGAAGACATAAGTG-AAGACGTA-TTGTTG---TATGACTA-A--GTAACTGAGATA--------TTTACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATAG--C-G--ATATT---TC-----A-----------T--------GTG----------TCTTTCTCCTA-GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT-G--ACT--TTATC---CC-----T--------A-TT--------GAG----------AC---CCC-TA-ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT-G--A-AACCTATC---ACTTGTAA--------CATT--------GAG---------------CCCTAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATGG--A-G--TTGTC---TA-----A--------C-TT---------AGCCCATTGATCTC---CTTTTA-ATGATAGTGAA
gi|17 : tttatgatAAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|19 : TGGTAGTTAGCATACACAT--------TT-TTATTGATGTATGGGTA-GTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GT-ACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTGA---TTTGGCAAATA-TGACTTACAAA---AT--ATTTAAAATTAAAAA----------------GGCCATA----ATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATTTGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGTCTTTTT--------------GATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGT-T-GCC---------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCAAAACC-A-AGAT-CAAA-T--AG----T-ttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GG-ACCAC----AC-GCCTGC-----CTAAAATC-AAAATGCAGTGATTTCACTTGT-CCCCTGA-CTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG---A--GACGTGGGA--AGTGG---TTACTGGGATATTA-GCGT-G-CCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGAAAATCAA-AT-TGCAAACC--AG----T-ATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA-----CGAAGTTTCATTGATTTA--gctccccgag
gi|3 : AACTTTAATAAA-ATTTTCTAAGTATAAAACGGCT-CGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTTGGC-TCC--TTGTGTTTCTT----TTATTAT-A------GTAAAATGCACACG--AAGTTTCATTG-ATT-------------T-AAAGGGAC-CATACTTTATA-CTAAAAT-TAA--AATGGAGTTATCCCACTaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttatACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATGG--A-G--TTATC---CC-----ACTAAGTCTC-TC--------GAA----------TC---TCATTT-ATGGTAGCGAAaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacGTT--ATGACA-CT--ATTTTAC---TTT----AATACTGA---ACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG----G-GCTTCTTTAA---ACAC-TTTAA-TCAAA----TT-CTAAGTATAAAAGGG-GCAAT----ACTA--CGG-----CATAAAACAATA-----GTTATCTCCCTTGTACCTATAA-----AC----------------GTAGT---GGAGA--TA-tt
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagAATATCAAAATAG--C-CACAATTCTGCC-----TT-T-AT-T-CAAA-C--AAAAGTT-ACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC-----TTGAAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACA--ATTTTGCCTGAATTTAAAACGTGA----GTGATCTCACTTGTCTCTC--TCAGGTCCTTGAGTGC--TGGTGACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcACT--------------GGTAGT---GAAGA--CA-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGA-TC-TTA-T---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAAT--T-A-----AAA-TCTAG----TTACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA----TGGAAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA---------------------TTATTGACA-GCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACAG--A-G--TTATC---CC-----A--------C-TT--------Ggc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATAG--A-G--TTATC---CA-----A--------C-TTGGCCCCTGGAG----------AC---CTCTTT-TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTGgccat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACATTTATATTCATCAATGTATATAAATGTATGAGTAGTGCTTACTGAGTTATGTGTATGCTTAATTGCTTTAACCAAA
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 11 1 11 222 1111 1 555555555555555 99999999999999999999999999999 222 22 1 2222 1 1 444444444444444444 1 22222 5555555555555555555555 111 55555555555555555555 1111 999999999999999999999999 11 11 1111 33333333333333333333333 1 11 333333333333333333333 11 1 222 3333333 11 222222 1 222222 1 3333333 1 1 33 444444444444444444 11 111 11 2222 1 1 4444444444 222 1 11 3333333333 111 2222 1 222 22222 444444444444444444444 22222 111 333333333 2 3333333333333333333333333333333333333333333333333 11111 11111
lowQualScore : 88 3 00 333 2222 3 000000000000000 7 44444444444444444444444444444 6 1 1 333 00 2 8888 7 1 0 0 1 999999999999999999 22 0 1 55555 1 6 0 8888888888888888888888 444 55555555555555555555 666 2 8888 1 4 666666666666666666666666 1 33 1 99 22 2222 4 5 8 0 44444444444444444444444 8 1 0 0 1 0 77 33 777777777777777777777 33 3 1 111 1 2222222 2 66 777777 88 1 2 1 222222 3 2 0 6666666 3 3 3 11 1 666666666666666666 2 0 0 7 0 1 11 5 3 444 8 99 8 8 11 1 0 1 1 4444 5 5 1 1111111111 111 5 1 88 7777777777 1 1 1 888 1 1 4444 1 5 1 1 111 1 1 1 66666 1 1 1 1 1 1 2 888888888888888888888 4444 8 0 1 00000 0 111 9 77 666666666 66 4 4 44 33 4 0 55 4 55 5555555555555555555555555555555555555555555555555 0 5 4 1 6 44 66666 11 6 55555
lowQualScore : .. . .. ... .... . ............... . ............................. . . . ... .. . .... . . . . . .................. .. . . ..... . . . ...................... ... .................... ... . .... . . ........................ . .. . .. .. .... . . . . ....................... . . . . . . .. .. ..................... .. . . ... . ....... . .. ...... .. . . . ...... . . . ....... . . . .. . .................. . . . . . . .. . . ... . .. . . .. . . . . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . . . ..... . . . . . . . ..................... .... . . . ..... . ... . .. ......... .. . . .. .. . . .. . .. ................................................. . . . . . .. ..... .. . .....
lowQualScore : 33 3 33 333 3333 3 333333333333333 3 77777777777777777777777777777 7 0 0 333 77 0 3333 3 2 0 0 0 222222222222222222 00 0 0 00000 0 5 2 7777777777777777777777 000 00000000000000000000 555 5 2222 0 2 555555555555555555555555 2 88 0 88 22 2222 6 6 2 6 44444444444444444444444 0 2 8 2 0 0 88 88 888888888888888888888 88 3 0 555 0 0000000 5 00 000000 33 0 0 0 777777 7 0 7 0000000 3 3 7 77 0 666666666666666666 0 8 7 3 8 0 88 6 6 000 0 00 8 0 00 0 7 0 0 0000 5 5 0 0000000000 000 0 0 00 0000000000 0 0 0 555 0 0 5555 0 5 0 0 000 0 0 0 55555 0 0 0 0 0 0 5 333333333333333333333 4444 0 8 4 55555 3 777 0 44 444444444 11 0 0 00 99 0 0 55 0 55 9999999999999999999999999999999999999999999999999 9 0 2 0 7 33 77777 77 7 11111
consensus : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTAGCG--TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGGG--TCTNTTAGCGCGTGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGGT--G---A---AT--ATCCAA--TGAAAAG---------TGT----GGGTATTTAAGA-G-TGCATTTA---AAACATTTAAATCAAA----TTTCTATGTATAAAA-GA-GCAAT----TTTATTCTT-----CGTAAAAC-AGA-----ATTACCGGACTTGTGCCACTAA-TGGTACT--------------GGTAGT---GGAGA--CAGTGTGGTATTTC-ATTTATGCATGTCTAGTAA---TAACTGAGATGTGA-GC---------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCAAAATC-TTAT-C-CAAG-C--------T-ACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAAC-------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATA--GTTCTGCCAAAAAATAACA-GTGA----GTTAACCCACTTGTC-CCCATCGAGA-GCTATTAACG-GTGGT-AC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAA----GTA-TCATTGATGTATGGGTA-GTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT-G--A-G--TAATC---CA-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|10 : ----GTAGTTACTGACATATGAGAA-GTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATG--ATTTTC---------TTA-A-AT-GATA-----CCATTATCCTGTTTAAACAT----------A-G--TTGAC---CC-----A--------C-TT--------Gacaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTGA-TGAA-ATTAAAAC-AGAA-G--CTATCAGCCT-----C--------C-TT--------GAG----------TG---CCCCAA-ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTATgc
gi|12 : ATGATAGTGAAGACATAAGTG-AAGACGTA-TTGTTG---TATGACTA-A--GTAACTGAGATA--------TTTACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATAG--C-G--ATATT---TC-----A-----------T--------GTG----------TCTTTCTCCTA-GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT-G--ACT--TTATC---CC-----T--------A-TT--------GAG----------AC---CCC-TA-ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT-G--A-AACCTATC---ACTTGTAA--------CATT--------GAG---------------CCCTAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATGG--A-G--TTGTC---TA-----A--------C-TT---------AGCCCATTGATCTC---CTTTTA-ATGATAGTGAA
gi|17 : tttatgatAAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|19 : TGGTAGTTAGCATACACAT--------TT-TTATTGATGTATGGGTA-GTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GT-ACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTGA---TTTGGCAAATA-TGACTTACAAA---AT--ATTTAAAATTAAAAA----------------GGCCATA----ATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATTTGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGTCTTTTT--------------GATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGT-T-GCC---------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCAAAACC-A-AGAT-CAAA-T--AG----T-ttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GG-ACCAC----AC-GCCTGC-----CTAAAATC-AAAATGCAGTGATTTCACTTGT-CCCCTGA-CTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG---A--GACGTGGGA--AGTGG---TTACTGGGATATTA-GCGT-G-CCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGAAAATCAA-AT-TGCAAACC--AG----T-ATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA-----CGAAGTTTCATTGATTTA--gctccccgag
gi|3 : AACTTTAATAAA-ATTTTCTAAGTATAAAACGGCT-CGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTTGGC-TCC-TTGTGTTTCTTTTA-----TTAT-A------GTAAAATGCACACG--AAGTTTCATTG-ATT-------------T-AAAGGGAC-CATACTTTATA-CTAAAAT-TAA--AATGGAGTTATCCCACTaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttatACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATGG--A-G--TTATC---CC-----ACTAAGTCTC-TC--------GAA----------TC---TCATTT-ATGGTAGCGAAaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacGTT--ATGACA-CT--ATTTTAC---TTT----AATACTGA---ACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG----G-GCTTCTTTAA---ACAC-TTTAA-TCAAA----TT-CTAAGTATAAAAGGG-GCAAT----ACTA--CGG-----CATAAAACAATA-----GTTATCTCCCTTGTACCTATAA-----AC----------------GTAGT---GGAGA--TA-tt
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagAATATCAAAATAG--C-CACAATTCTGCC-----TT-T-AT-T-CAAA-C--AAAAGTT-ACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC-----TTGAAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACA--ATTTTGCCTGAATTTAAAACGTGA----GTGATCTCACTTGTCTCTC-TCAGG--TCCTTGAGTGC-TGGTGACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcACT--------------GGTAGT---GAAGA--CA-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGA-TC-TTA-T---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAAT--T-A-----AAA-TCTAG----TTACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA----TGGAAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA---------------------TTATTGACA-GCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACAG--A-G--TTATC---CC-----A--------C-TT--------Ggc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATAG--A-G--TTATC---CA-----A--------C-TTGGCCCCTGGAG----------AC---CTCTTT-TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTGgccat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACATTTATATTCATCAATGTATATAAATGTATGAGTAGTGCTTACTGAGTTATGTGTATGCTTAATTGCTTTAACCAAA
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 11 1 11 222 1111 1 555555555555555 99999999999999999999999999999 222 22 1 33333 1 1 444444444444444444 1 22222 5555555555555555555555 111 55555555555555555555 1111 999999999999999999999999 11 11 1111 33333333333333333333333 1 11 333333333333333333333 11 1 222 3333333 11 222222 1 222222 1 3333333 1 1 33 2 333333333 11 111 11 2222 1 1 4444444444 222 1 11 3333333333 111 2222 1 222 22222 444444444444444444444 22222 111 333333333 2 3333333333333333333333333333333333333333333333333 11111 11111
lowQualScore : 88 3 00 333 2222 3 000000000000000 7 44444444444444444444444444444 6 1 1 333 00 2 55555 1 0 0 1 999999999999999999 22 0 1 55555 1 6 0 8888888888888888888888 444 55555555555555555555 666 2 8888 1 4 666666666666666666666666 1 33 1 99 22 2222 4 5 8 0 44444444444444444444444 8 1 0 0 1 0 77 33 777777777777777777777 33 3 1 111 1 2222222 2 66 777777 88 1 2 1 222222 3 2 0 6666666 3 3 1 11 44 6 444444444 2 0 0 7 0 1 11 5 3 444 8 99 8 8 11 1 0 1 1 4444 5 5 1 1111111111 111 5 1 88 7777777777 1 1 1 888 1 1 4444 1 5 1 1 111 1 1 1 66666 1 1 1 1 1 1 2 888888888888888888888 4444 8 0 1 00000 0 111 9 77 666666666 66 4 4 44 33 4 0 55 4 55 5555555555555555555555555555555555555555555555555 0 5 4 1 6 44 66666 11 6 55555
lowQualScore : .. . .. ... .... . ............... . ............................. . . . ... .. . ..... . . . . .................. .. . . ..... . . . ...................... ... .................... ... . .... . . ........................ . .. . .. .. .... . . . . ....................... . . . . . . .. .. ..................... .. . . ... . ....... . .. ...... .. . . . ...... . . . ....... . . . .. .. . ......... . . . . . . .. . . ... . .. . . .. . . . . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . . . ..... . . . . . . . ..................... .... . . . ..... . ... . .. ......... .. . . .. .. . . .. . .. ................................................. . . . . . .. ..... .. . .....
lowQualScore : 33 3 33 333 3333 3 333333333333333 3 77777777777777777777777777777 7 0 0 333 77 0 77777 2 0 0 0 222222222222222222 00 0 0 00000 0 5 2 7777777777777777777777 000 00000000000000000000 555 5 2222 0 2 555555555555555555555555 2 88 0 88 22 2222 6 6 2 6 44444444444444444444444 0 2 8 2 0 0 88 88 888888888888888888888 88 3 0 555 0 0000000 5 00 000000 33 0 0 0 777777 7 0 7 0000000 3 3 0 77 33 7 555555555 0 8 7 3 8 0 88 6 6 000 0 00 8 0 00 0 7 0 0 0000 5 5 0 0000000000 000 0 0 00 0000000000 0 0 0 555 0 0 5555 0 5 0 0 000 0 0 0 55555 0 0 0 0 0 0 5 333333333333333333333 4444 0 8 4 55555 3 777 0 44 444444444 11 0 0 00 99 0 0 55 0 55 9999999999999999999999999999999999999999999999999 9 0 2 0 7 33 77777 77 7 11111
consensus : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTAGCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGGT--G---A---AT--ATCCAA--TGAAAAG---------TGT----GGGTATTTAAGA-G-TGCATTTA---AAACATTTAAATCAAA----TTTCTATGTATAAAA-GA-GCAAT----TTTATTCTT-----CGTAAAAC-AGA-----ATTACCGGACTTGTGCCACTAA-TGGTACT--------------GGTAGT---GGAGA--CAGTGTGGTATTTC-ATTTATGCATGTCTAGTAA---TAACTGAGATGTGA-GC---------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCAAAATC-TTAT-C-CAAG-C--------T-ACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAAC-------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATA--GTTCTGCCAAAAAATAACA-GTGA----GTTAACCCACTTGTC-CCCATCGAGA-GCTATTAACGGTGGT-AC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAA----GTA-TCATTGATGTATGGGTA-GTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT-G--A-G--TAATC---CA-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|10 : ----GTAGTTACTGACATATGAGAA-GTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATG--ATTTTC---------TTA-A-AT-GATA-----CCATTATCCTGTTTAAACAT----------A-G--TTGAC---CC-----A--------C-TT--------Gacaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTGA-TGAA-ATTAAAAC-AGAA-G--CTATCAGCCT-----C--------C-TT--------GAG----------TG---CCCCAA-ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTATgc
gi|12 : ATGATAGTGAAGACATAAGTG-AAGACGTA-TTGTTG---TATGACTA-A--GTAACTGAGATA--------TTTACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATAG--C-G--ATATT---TC-----A-----------T--------GTG----------TCTTTCTCCTA-GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT-G--ACT--TTATC---CC-----T--------A-TT--------GAG----------AC---CCC-TA-ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT-G--A-AACCTATC---ACTTGTAA--------CATT--------GAG---------------CCCTAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATGG--A-G--TTGTC---TA-----A--------C-TT---------AGCCCATTGATCTC---CTTTTA-ATGATAGTGAA
gi|17 : tttatgatAAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|19 : TGGTAGTTAGCATACACAT--------TT-TTATTGATGTATGGGTA-GTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GT-ACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTGA---TTTGGCAAATA-TGACTTACAAA---AT--ATTTAAAATTAAAAA----------------GGCCATA----ATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATTTGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGTCTTTTT--------------GATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGT-T-GCC---------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCAAAACC-A-AGAT-CAAA-T--AG----T-ttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GG-ACCAC----AC-GCCTGC-----CTAAAATC-AAAATGCAGTGATTTCACTTGT-CCCCTGA-CTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG---A--GACGTGGGA--AGTGG---TTACTGGGATATTA-GCGT-G-CCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGAAAATCAA-AT-TGCAAACC--AG----T-ATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA-----CGAAGTTTCATTGATTTA--gctccccgag
gi|3 : AACTTTAATAAA-ATTTTCTAAGTATAAAACGGCT-CGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTTGGC-TCC-TTGTGTTTCTTTTATTA-TAGT-A---------AAATGCACACG--AAGTTTCATTG-ATT-------------T-AAAGGGAC-CATACTTTATA-CTAAAAT-TAA--AATGGAGTTATCCCACTaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttatACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATGG--A-G--TTATC---CC-----ACTAAGTCTC-TC--------GAA----------TC---TCATTT-ATGGTAGCGAAaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacGTT--ATGACA-CT--ATTTTAC---TTT----AATACTGA---ACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG----G-GCTTCTTTAA---ACAC-TTTAA-TCAAA-----TTCTAAGTATAAAAGGG-GCAAT----ACTA--CGG-----CATAAAACAATA-----GTTATCTCCCTTGTACCTATAA-----AC----------------GTAGT---GGAGA--TA-tt
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagAATATCAAAATAG--C-CACAATTCTGCC-----TT-T-AT-T-CAAA-C--AAAAGTT-ACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC-----TTGAAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACA--ATTTTGCCTGAATTTAAAACGTGA----GTGATCTCACTTGTCTCTC-TCAGG--TCCTTGAGTGCTGGTGACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcACT--------------GGTAGT---GAAGA--CA-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGA-TC-TTA-T---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAAT--T-A-----AAA-TCTAG----TTACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA----TGGAAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA---------------------TTATTGACA-GCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACAG--A-G--TTATC---CC-----A--------C-TT--------Ggc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATAG--A-G--TTATC---CA-----A--------C-TTGGCCCCTGGAG----------AC---CTCTTT-TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTGgccat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACATTTATATTCATCAATGTATATAAATGTATGAGTAGTGCTTACTGAGTTATGTGTATGCTTAATTGCTTTAACCAAA
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 11 1 11 222 1111 1 555555555555555 99999999999999999999999999999 222 22 1 33333 1 1 444444444444444444 1 22222 5555555555555555555555 111 55555555555555555555 1111 999999999999999999999999 11 11 1111 33333333333333333333333 1 11 333333333333333333333 11 1 222 3333333 11 222222 1 222222 1 3333333 1 1 33 2 333333333 11 111 11 2222 1 1 4444444444 222 1 11 3333333333 111 2222 1 222 22222 444444444444444444444 22222 111 333333333 2 3333333333333333333333333333333333333333333333333 11111 11111
lowQualScore : 88 3 00 333 2222 3 000000000000000 7 44444444444444444444444444444 6 1 1 333 00 2 55555 1 0 0 1 999999999999999999 22 0 1 55555 1 6 0 8888888888888888888888 444 55555555555555555555 666 2 8888 1 4 666666666666666666666666 1 33 1 99 22 2222 4 5 8 0 44444444444444444444444 8 1 0 0 1 0 77 33 777777777777777777777 33 3 1 111 1 2222222 2 66 777777 88 1 2 1 222222 3 2 0 6666666 3 3 1 11 11 6 444444444 2 0 0 7 0 1 11 5 3 444 8 99 8 8 11 1 0 1 1 4444 5 5 1 1111111111 111 5 1 88 7777777777 1 1 1 888 1 1 4444 1 5 1 1 111 1 1 1 66666 1 1 1 1 1 1 2 888888888888888888888 4444 8 0 1 00000 0 111 9 77 666666666 66 4 4 44 33 4 0 55 4 55 5555555555555555555555555555555555555555555555555 0 5 4 1 6 44 66666 11 6 55555
lowQualScore : .. . .. ... .... . ............... . ............................. . . . ... .. . ..... . . . . .................. .. . . ..... . . . ...................... ... .................... ... . .... . . ........................ . .. . .. .. .... . . . . ....................... . . . . . . .. .. ..................... .. . . ... . ....... . .. ...... .. . . . ...... . . . ....... . . . .. .. . ......... . . . . . . .. . . ... . .. . . .. . . . . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . . . ..... . . . . . . . ..................... .... . . . ..... . ... . .. ......... .. . . .. .. . . .. . .. ................................................. . . . . . .. ..... .. . .....
lowQualScore : 33 3 33 333 3333 3 333333333333333 3 77777777777777777777777777777 7 0 0 333 77 0 77777 2 0 0 0 222222222222222222 00 0 0 00000 0 5 2 7777777777777777777777 000 00000000000000000000 555 5 2222 0 2 555555555555555555555555 2 88 0 88 22 2222 6 6 2 6 44444444444444444444444 0 2 8 2 0 0 88 88 888888888888888888888 88 3 0 555 0 0000000 5 00 000000 33 0 0 0 777777 7 0 7 0000000 3 3 0 77 77 7 555555555 0 8 7 3 8 0 88 6 6 000 0 00 8 0 00 0 7 0 0 0000 5 5 0 0000000000 000 0 0 00 0000000000 0 0 0 555 0 0 5555 0 5 0 0 000 0 0 0 55555 0 0 0 0 0 0 5 333333333333333333333 4444 0 8 4 55555 3 777 0 44 444444444 11 0 0 00 99 0 0 55 0 55 9999999999999999999999999999999999999999999999999 9 0 2 0 7 33 77777 77 7 11111
consensus : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGGT--G---A---AT--ATCCAA--TGAAAAG---------TGT----GGGTATTTAAGA-G-TGCATTTA---AAACATTTAAATCAAA----TTTCTATGTATAAAA-GA-GCAAT----TTTATTCTT-----CGTAAAAC-AGA-----ATTACCGGACTTGTGCCACTAA-TGGTACT--------------GGTAGT---GGAGA--CAGTGTGGTATTTC-ATTTATGCATGTCTAGTAA---TAACTGAGATGTGA-GC---------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCAAAATC-TTAT-C-CAAG-C--------T-ACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAAC-------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATA--GTTCTGCCAAAAAATAACA-GTGA----GTTAACCCACTTGTC-CCCATCGAGA-GCTATTAACGGTGGT-AC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAA----GTA-TCATTGATGTATGGGTA-GTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT-G--A-G--TAATC---CA-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|10 : ----GTAGTTACTGACATATGAGAA-GTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATG--ATTTTC---------TTA-A-AT-GATA-----CCATTATCCTGTTTAAACAT----------A-G--TTGAC---CC-----A--------C-TT--------Gacaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTGA-TGAA-ATTAAAAC-AGAA-G--CTATCAGCCT-----C--------C-TT--------GAG----------TG---CCCCAA-ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTATgc
gi|12 : ATGATAGTGAAGACATAAGTG-AAGACGTA-TTGTTG---TATGACTA-A--GTAACTGAGATA--------TTTACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATAG--C-G--ATATT---TC-----A-----------T--------GTG----------TCTTTCTCCTA-GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT-G--ACT--TTATC---CC-----T--------A-TT--------GAG----------AC---CCC-TA-ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT-G--A-AACCTATC---ACTTGTAA--------CATT--------GAG---------------CCCTAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATGG--A-G--TTGTC---TA-----A--------C-TT---------AGCCCATTGATCTC---CTTTTA-ATGATAGTGAA
gi|17 : tttatgatAAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|19 : TGGTAGTTAGCATACACAT--------TT-TTATTGATGTATGGGTA-GTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GT-ACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTGA---TTTGGCAAATA-TGACTTACAAA---AT--ATTTAAAATTAAAAA----------------GGCCATA----ATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATTTGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGTCTTTTT--------------GATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGT-T-GCC---------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCAAAACC-A-AGAT-CAAA-T--AG----T-ttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GG-ACCAC----AC-GCCTGC-----CTAAAATC-AAAATGCAGTGATTTCACTTGT-CCCCTGA-CTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG---A--GACGTGGGA--AGTGG---TTACTGGGATATTA-GCGT-G-CCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGAAAATCAA-AT-TGCAAACC--AG----T-ATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA-----CGAAGTTTCATTGATTTA--gctccccgag
gi|3 : AACTTTAATAAA-ATTTTCTAAGTATAAAACGGCT-CGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTTGGC-TCC-TTGTGTTTCTTTTATTA-TAGT-A---------AAATGCACACG--AAGTTTCATTG-ATT-------------T-AAAGGGAC-CATACTTTATA-CTAAAAT-TAA--AATGGAGTTATCCCACTaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttatACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATGG--A-G--TTATC---CC-----ACTAAGTCTC-TC--------GAA----------TC---TCATTT-ATGGTAGCGAAaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacGTT--ATGACA-CT--ATTTTAC---TTT----AATACTGA---ACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG----G-GCTTCTTTAA---ACAC-TTTAA-TCAAA-----TTCTAAGTATAAAAGGG-GCAAT----ACTA--CGG-----CATAAAACAATA-----GTTATCTCCCTTGTACCTATAA-----AC----------------GTAGT---GGAGA--TA-tt
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagAATATCAAAATAG--C-CACAATTCTGCC-----TT-T-AT-T-CAAA-C--AAAAGTT-ACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC-----TTGAAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACA--ATTTTGCCTGAATTTAAAACGTGA----GTGATCTCACTTGTCTCTC-TCAGG--TCCTTGAGTGCTGGTGACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcACT--------------GGTAGT---GAAGA--CA-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGA-TC-TTA-T---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAAT--T-A-----AAA-TCTAG----TTACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA----TGGAAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA---------------------TTATTGACA-GCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACAG--A-G--TTATC---CC-----A--------C-TT--------Ggc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATAG--A-G--TTATC---CA-----A--------C-TTGGCCCCTGGAG----------AC---CTCTTT-TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTGgccat
blockSeqs : . . CC . GGCA C ACAAACAAATTA A CTGATACTATATTCAGAGATATGG C C C GTC T G TTATT G G A C AAAATTTGTTTGTCTAAA TG A T ATGCA G G CTTTACTTGCCCACTTGATAT AAG CTCACGAGATATTCCAATT CAT C ACTG T C GCGTGCCTTATAACTTTAATA A AA A CA AT GGC A T C TTATTCAAACAAAAGT T T T T TT TT CTGTGAAGACACTT CT T T TTT T GTCTCAT C AG AGCCAA TG C A C TCGTT G T ACCAGT T . T TT TT C GACAAGATG C A C GA T G CAA A GA C A GT T T G . . T A . TAC . G . CA C A T T T C ATTT G A A A . G A A TCATG A A T T A T T AGACATAAGTGAAGACGTA ACAT A T CATGC AGT A AG TGTATATGT TG T . GA TT C A GA C AC TAACTTAGCCCATTGATCTC C C G A TT TCATG AT A TCTGT
blockSeqs : . . . . . . CTTACAAAAT A GGCCATAAT C T A . . . . A . . C ACGCCTGC TA . A . C A GTCTTTTT . GATATGA TGG C C T T GGTTGCC T . A A AC CT G T G CAAATTGCAAACCAG . C A . TC . TAAAATGCACAC . . G A G G G AACA T C GTG . . G . GT . ACGAC T . A G G T . . A A . . A GCATACACATTT ATGT . A C . T A AT A . . GA CC . G . . . CCACTAAGTCTCTCGAATC . T G . TG . GT . .
blockSeqs : A . . A ACTACGG AT . T . C . AC . CACAAC AAC . G A A TCTTAT C . T A AT T A T T CAAGATCAAATAG . T T . . . TCACACATG . A T C . T C . . C T . . A . ACA . A T . T A A G . . GA CC . G . . . CAACTTGGCCCCTGGAGAC . T C . AA . GC .
blockSeqs : . . C C A . . TAAAATCTAG . . . . . C . . . T T . T T . . A . A . . GG CC . A . . . ACTTGTAACATTGAG . G A . TG . AA .
blockSeqs : . . T . A . . GG AC . A . . . AGCCTCCTTGAGTG . T C . CA . AA .
blockSeqs : . . A . . GA CT . . . . . TCATGTGTCTTT . C
blockSeqs : G . . GG TA . . . . . CCTATTGAGAC . A
blockSeqs : . . . A . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : .
blockSeqCons : A* CAAAATCAAACAG********** CAACTTGGCCNTTGAGC********************************
originalCons : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATC-T-AT-T-CAAA-C--AG----T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATC---CC-----A--------C-TT--------GAG----------TC---CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
finalCons : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTATA-AAACGG--C-CGTAATTCTGCCCAAAATCAAAATCAAACAG----------T-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT-G--A-G--TTATCCAACTTGGCCNTTGAGC--------------------------------CCCTTA-ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACATTTATATTCATCAATGTATATAAATGTATGAGTAGTGCTTACTGAGTTATGTGTATGCTTAATTGCTTTAACCAAA
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA
Alignments
lowQualScore : 11 1 11 222 1111 1 555555555555555 99999999999999999999999999999 222 22 1 2222 1 1 444444444444444444 1 22222 5555555555555555555555 111 55555555555555555555 1111 999999999999999999999999 11 11 1111 2222222222222 1 11 333333333333333333333 11 1 222 3333333 11 222222 1 222222 1 3333333 1 1 33 2 333333333 11 111 11 2222 1 1 4444444444 222 1 11 3333333333 111 2222 1 222 22222 444444444444444444444 22222 111 333333333 22 111111111 111 11 11111 11111
lowQualScore : 88 3 00 333 2222 3 000000000000000 7 44444444444444444444444444444 6 1 1 333 00 2 8888 7 1 0 0 1 999999999999999999 22 0 1 55555 1 6 0 8888888888888888888888 444 55555555555555555555 666 2 8888 1 4 666666666666666666666666 1 33 1 99 22 2222 4 5 1 1 0000000000000 1 0 0 1 0 77 33 777777777777777777777 33 3 1 111 1 2222222 2 66 777777 88 1 2 1 222222 3 2 0 6666666 3 3 1 11 11 6 444444444 2 0 0 7 0 1 11 5 3 444 8 99 8 8 11 1 0 1 1 4444 5 5 1 1111111111 111 5 1 88 7777777777 1 1 1 888 1 1 4444 1 5 1 1 111 1 1 1 66666 1 1 1 1 1 1 2 888888888888888888888 4444 8 0 1 00000 0 111 9 77 666666666 66 4 4 44 33 4 55 4 55 4 999999999 2 5 555 11 66 4 1 6 44 66666 11 6 55555
lowQualScore : .. . .. ... .... . ............... . ............................. . . . ... .. . .... . . . . . .................. .. . . ..... . . . ...................... ... .................... ... . .... . . ........................ . .. . .. .. .... . . . . ............. . . . . . .. .. ..................... .. . . ... . ....... . .. ...... .. . . . ...... . . . ....... . . . .. .. . ......... . . . . . . .. . . ... . .. . . .. . . . . .... . . . .......... ... . . .. .......... . . . ... . . .... . . . . ... . . . ..... . . . . . . . ..................... .... . . . ..... . ... . .. ......... .. . . .. .. . .. . .. . ......... . . ... .. .. . . . .. ..... .. . .....
lowQualScore : 33 3 33 333 3333 3 333333333333333 3 77777777777777777777777777777 7 0 0 333 77 0 3333 3 2 0 0 0 222222222222222222 00 0 0 00000 0 5 2 7777777777777777777777 000 00000000000000000000 555 5 2222 0 2 555555555555555555555555 2 88 0 88 22 2222 6 6 4 0 6666666666666 2 8 2 0 0 88 88 888888888888888888888 88 3 0 555 0 0000000 5 00 000000 33 0 0 0 777777 7 0 7 0000000 3 3 0 77 77 7 555555555 0 8 7 3 8 0 88 6 6 000 0 00 8 0 00 0 7 0 0 0000 5 5 0 0000000000 000 0 0 00 0000000000 0 0 0 555 0 0 5555 0 5 0 0 000 0 0 0 55555 0 0 0 0 0 0 5 333333333333333333333 4444 0 8 4 55555 3 777 0 44 444444444 11 0 0 00 99 0 55 0 55 0 222222222 6 0 222 99 99 2 0 7 33 77777 77 7 11111
consensus : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATCAAANT-CAAA-CAGTTACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAATA-GA-G--TTA-TCCAACTTG-G-CCNTT-GAG-C-CCC--CTA--ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
Reference ( family-1615 ) : AGTT--GTGATA-CTCCATTGTGC---TTTGGCGAATA-TGAC--GCAAA---AT--ATTTAAAATTAAAAA---------TGT----GGNTATN----A-GCTTCNTTNA---AAAC-TTTAAGTCAAA----TTTCTAAGTATAAAA-GG-GCNAT----NCTGTTCGT-----CNNAAAAC-ANA-----GTTATCTNACTTGTGCCCCTGA-TNTTACT--------------GGTAGT---GAAGA--CA-CGAGATATTCC-ATCGATGCGCGACTAGTAA---TNACCGAGATATGA-GC-T-G-C---------------AAATTTT--CTNAGTAT-AAAACGG--C-CGTAATTCTGCCCAAAATCAAAAT-CAAA-CAGT-ACCCCATTTGTCCCCTTGNG-TGCTNTTA--ATGGT----AAAA--CACA----TNGAAGTTTCATTGATGTA--TG-ANTAGTAGTTGTTTCNGACGTCTCATATACGANGCTAGCTNGCCAACAAACTTTAACCAATNTTTTNTAAGTGTAAAANGGCNACG--ATTCTGCCGAAAATTAAAACGCGA----GT-ATCCCACTTGTC-CCC-TCGNG--TCTTTTANCG-TGGT-ACGAGATGTGAAACGTACTCGATAAATTTNACTGAATTTTTTTA---AGTAT-AAAAGGGN-CATAANTTCTGCCTAAAAT-CAA--AANGGAGTTATCCCACTCGTTGNTAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGNACTGCGACATCTGAGTATCTATGNTGTGGACACATGATATGATACTCTACCCAGTCACATTACACTGGCACCTGGNCACTAAGACTCAGAAATATCCTNTNAATGCTNAGCNAGNANCATTTTCTAAGGAAANTATCTGGTANCATTNTTCAAGNTNCNTGTATGATCATGCCAGGCTGNGGGNACGAACCAGNGACCTCCTGCANGCGAGGCGGATGCTCTNCCACTAGACANCCGCTGCAGTAAATGATGGTAGTGAAGACACACGTG-A----GTA-TTATTGACGTATGGGTA-GTGGTAACTGAGATAC----GAGTATGCC---TAAAAACTTTAAACGA-ATTTTC---------TTA-GTAT-AAAA-GGGGCCATAATTCTGCCTAAA-ATCAAAAT--GA-G--TTA-TCCAACTTG-G-CCNTT-GAG-C-CCC--TTA--ATGATAGCGAAGACAC-ACGTGAAGTT-----TCGNTGAT-GTATCTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|1 : AGTTTGGTAATAACTCTACTGTGCGAGTTTGGTGAACA-TGGT--G---A---AT--ATCCAA--TGAAAAG---------TGT----GGGTATTTAAGA-G-TGCATTTA---AAACATTTAAATCAAA----TTTCTATGTATAAAA-GA-GCAAT----TTTATTCTT-----CGTAAAAC-AGA-----ATTACCGGACTTGTGCCACTAA-TGGTACT--------------GGTAGT---GGAGA--CAGTGTGGTATTTC-ATTTATGCATGTCTAGTAA---TAACTGAGATGTGA-GC---------------------AAATTTT--CTTAATATTGAAAGGG--C-TCTAATGCTACCCAAAATCTTATC-CAAG-C--T-ACCCCAAATGTCCACTTGAG-TGCTGTTA--ATGG-----AAAA--CATAAGTGTGCAAGTTTCATTGATGTA--TG-ACTAGTAGTTA---CAAAC-------ATAAGAT-CTAATTT-----TAAACTTGAACCAATTTTTTTTAAAT-TAAAAAGGCCATA--GTTCTGCCAAAAAATAACA-GTGA----GTTAACCCACTTGTC-CCCATCGAGA-GCTATTAACGGTGGT-AC-AGATATGAAATGTCCTTGATAACTTTAACTGAATTTTTTTA---AGTAT-AAAAAGGT-CTTAAATTCTGCCTTAAAT-CAA--AAGGGAGTTATCCCATTCATTAATAATAAAGTTGTTGTATGGTGTTTAATGTCACTTTCAACAATTTTCAGTCAAATTGCATGTGTCTACTGGAGATAGTATTCCAAGTACTGCGACATCTGAGTATC-ATGCTGTAGACACATGATATGATACTCTACCCAGTCACAT---ACTGACACCTGGCCACTAAGACTTAGAAATATCCTGTTAATGCTGAGCGAGAAGC----TCTAAGGAAATT-TCTAGTACCATTTTTCAAGTTTTTTGTATGA-----CCAGGCTGTGGGCACGAACCAAAGACCTTCTGCAAGCGAGGCGGATGCTCTTCCATTAGACAACCGCTGCAGTAAATAATGGTAATGAAGACACATGTGAA----GTA-TCATTGATGTATGGGTA-GTGGTAACTGAGATAT----GAGCATTCC---TAAAAACTTCAAATGA-ATTTTC---------TTA-TTAT-AAAATGGGGCCATAATTCTACCTAAA-ATCAAAAT--GA-G--TAA-TCCAAC---------TT-GAGTC-CCC--TTA--ATGATAGTGAAGACAC-ACATGCAGTT-----TCATTAAT-GTATTTG-TAGTGATGACTGACATATAATAAGGCCTAAAAACTTTTAACCAA
gi|10 : ----GTAGTTACTGACATATGAGAA-GTGATTACTGAGAAAC----GAATATGCC---TCAAAACATAAAATG--ATTTTC---------TTA-A-AT-GATA-----CCATTATCCTGTTTAAACAT---------A-G--TTG-ACCCACTTG-G-Cacaaggatatcagtagaactgatggatgctccctgaacaagtgtttgattgtgaagcg
gi|11 : -GTAT-AAAA-ATGACCATAATTCTG-ATGAA-ATTAAAACAGAA-G--CTA-T-CAGCCT-----CCTT-GAG-TGCCC--CAA--ATGACGACAAAGGTAC-ATTTGAAATTTCATGTCATTGAT-GTAT
gi|12 : ATGATAGTGAAGACATAAGTG-AAGACGTA-TTGTTG---TATGACTA-A--GTAACTGAGATA--------TTTACCAGTTAAAGAATTTAAACCAGATATTC---------GGA-ATAT-AAAA-GAGACCATAACTtaa
gi|13 : T-AAAA-GG--CCATAATTCTGCCTATA-TTCAAAATA-GC-G--ATATTTCA---TGTG-TCTTT-------CTC--CTA--GTGAAAGTGCAGACACAATGTTAAGTT-----TCGTTGGTAGTA------AGTGA
gi|14 : GA-AGTTTCAT-------TTATGTAT-AAAA-GGGACC-----------CAAA-ATCACAAT--GACT--TTA-TCC---------CTATT-GAG-A-CCC--CTA--ATGGTGATGAACACAA-AAATGCAGTT-----TTGCTGAT-G
gi|15 : GGTCATAATTATACCTAAA-ATCAACAT--GA-AACCTA-TC--ACTTGTA-ACATT-GAG-C-CC----TAACATGATAGGGAAAACAT-ATGTGAATTT-----TCAATGAA-GTAT
gi|16 : TAT-AAAA-GGGGCCATAATCTTGCCTTAA-ATCAAAATG-GA-G--TTG-TCTAACTTA-GCCCATT-GAT-C-TCCTTTTA--ATGATAGTGAA
gi|17 : tttatgatAAATTTCATTGAAATTTTGTACAAAGTAA-AAAAGGGGACATAA-TTCTGCCTAAAAT-CAA--AATGGAGGTACCCCACTTGTTGTTAATtg
gi|19 : TGGTAGTTAGCATACACAT--------TT-TTATTGATGTATGGGTA-GTAATAACTTAGATAT----GAGAATGC-----AAAAAC
gi|2 : GT-ACGAC---TGAAGCATGCTTTATAAATCTAACT--ATAGTTTTA---AGTATAAAAAGGGA-TATAGCTCCTAC--AAAATACAAGTAAAGGaatg
gi|2 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactAGTT--GTGATA-CTCCATTGTGA---TTTGGCAAATA-TGACTTACAAA---AT--ATTTAAAATTAAAAA----------------GGCCATA----ATGCTTTCTTCAGTCAAAC--TTAAGTTAAATTATTTTCTAGGTATAAAA-GGAGTCATAAAATTTGTTTGTCTAAACTGAAAAT-ATA-----GTTATCTGACGTAAGCTCCTGAGTCTTTTT--------------GATAGTAAGGAAGACTCA-CGAGATATTCCAATTGATGCATGACTAGTAC---TTACCAAGATATGAGGT-T-GCC---------------AAATATT--CTAAGTAT--AAATGG--T-CATAATTCTGCCCAAAACCAAGAT-CAAA-TAGT-ttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactagttgtgatactccattgtgatttggcaaatatgacttacaaaatatttaaaattaaaaaggccataatgctttcttcagtcaaacttaagttaaattattttctaggtataaaaggagtcataaaatttgtttgtctaaactgaaaatatagttatctgacgtaagctcctgagtctttttgatagtaaggaagactcacgagatattccaattgatgcatgactagtacttaccaagatatgaggttgccaaatattctaagtataaatggtcataattctgcccaaaaccaagatcaaatagttcaatattttcgcttata
gi|20 : atgataacacgctcaaccttttgataaggatctcaaatagttgcgatcgcatgactgagaactgtacgactgaagcatgctttataaatctaactatagttttaagtataaaaagggatatagctcctacaaaatacaagtaaaggttaaaacattaactttaatagtgaaaacaccaataacttttcaattaaagcacttagcattttctgagatatttctaaaacactattattaaaatatcttaaaacagggcatcgattctgccttaaattaagttaaacctttcgtgcctttaatagtactTTTCTA---AGTAT-GAAAGGGC-CATAAATACTGCCTACAAT-AAA--ATAGGAGTTATCCCACTTGtcaatattttcgcttata
gi|3 : AAGTATAAAA-GG-ACCAC----AC-GCCTGC-----CTAAAATC-AAAATGCAGTGATTTCACTTGT-CCCCTGA-CTTTACTTGCCCACTTGATATGGTAAT---GAAGA--------GATATG---A--GACGTGGGA--AGTGG---TTACTGGGATATTA-GCGT-G-CCTTATAACTTTAATAAAATTTT--CTAAGTAT-AAAACGG--CTCGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTTGGCTCCTTGTGTTTCTTTTATTATAGT----AAAATGCACA-----CGAAGTTTCATTGATTTA--gctccccgag
gi|3 : AACTTTAATAAA-ATTTTCTAAGTATAAAACGGCT-CGTTATTCTGTCGAAAATCAAATTGCAAACCAGT-ATCCCATTTGGC-TCC-TTGTGTTTCTTTTATTA-TAGT-A---------AAATGCACACG--AAGTTTCATTG-ATT-------------T-AAAGGGAC-CATACTTTATA-CTAAAAT-TAA--AATGGAGTTATCCCACTaagggaccatactttatactaaaattaaaatggagttatcccactaagtctctcgaatctcatttatggtagcgaatt
gi|3 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttatACGA-AGTTTCA--------TTG-ATTT-AAA--GGGACCATACTTTATACTAAA-ATTAAAATG-GA-G--TTA-TCCCACTAA-GTCTCTC-GAA-T-CTCA-TTT--ATGGTAGCGAAaagtctctcgaatctcatttatggtagcgaatt
gi|4 : aagtataaaaggaccacacgcctgcctaaaatcaaaatgcagtgatttcacttgtcccctgactttacttgcccacttgatatggtaatgaagagatatgagacgtgggaagtggttactgggatattagcgtgccttataactttaataaaattttctaagtataaaacggctcgttattctgtcgaaaatcaaattgcaaaccagtatcccatttggctccttgtgtttcttttattatagtaaaatgcacGTT--ATGACA-CT--ATTTTAC---TTT----AATACTGA---ACAAACAAATTAATTTTCAATTAAAAACTGATACTATATTCAGAGATATG----G-GCTTCTTTAA---ACAC-TTTAA-TCAAA----TT-CTAAGTATAAAAGGG-GCAAT----ACTA--CGG-----CATAAAACAATA-----GTTATCTCCCTTGTACCTATAA-----AC----------------GTAGT---GGAGA--TA-tt
gi|5 : gaggacatcacactcgacgtttttgaagcttctcttaaaagtagagcgattggactgaaactggataacgacataatgcatcctatacaaatctaacgcgattttttaataaacaaatttaaacgagtataacttttaacacaacagaagataagAATATCAAAATAG--C-CACAATTCTGCCTTTATTCAAA---CAAA--AGTTACCCCACTTGCCTTCTTGAG-TGTTCTGA--ATGGCTGTGAAGA--CAC-----TTGAAATGTTACAGATGTACTTGTATTAACAGTTGTTTCTGATGTCTCATATACAAAGCTAGCTAGCCAACAAACTTTAACCAATGTTTTGCAAGTGTACAAGGGCAACA--ATTTTGCCTGAATTTAAAACGTGA----GTGATCTCACTTGTCTCTC-TCAGG--TCCTTGAGTGCTGGTGACAAGATGTGTAATGTAC
gi|6 : AGGACTGCA----CTGAG-ATCTATGATGTGGACACAT----------TCTATTCAATTACATTACACTAGCA-CTGGGCA--AAG---CA-----ATTCTCTAAATGCTTA--TAGTACCATTTTTTAAAAAAAGTATCTGATAATATTAT---AGGTACATGTATAATCATGCCAGACTGAGGGAATGAACCAGTGACCTCCTGTATGCAAGGCGGATGCTTTACCACTAGACATTTTCTACAGTcattg
gi|7 : ttcACT--------------GGTAGT---GAAGA--CA-CAA-----------CGATGAACGACTAGTAACTGTAACAGAGGAAGGA-TC-TTA-T---------------AAATCTGAACTTAGTAT-AAA-CGGGGC-CATAAT-CTGCTTACAATTAAAAT-C----TAGTTACCCCATTTGTCCCCTTGTG-TGC---TA--ATGTT------CA--CACA----TGGAAATTCCGTTGCTGTG--TG-GGTAGTAGtatcttggtaaagga
gi|8 : TGATGGTAGTGA---------------------TTATTGACA-GCGGACAAGTGGCTACCGAGATACATGCGAGTATGCC---TAAAGACTTTGAAGGA-ATTTTCTGTATATGTTTA-ATGT-ATAA-AGGGCCATAATTCTACTTCAA-GCCAAAACA-GA-G--TTA-TCCCACTTG-G-CCATgc
gi|9 : cacttgcccattATGT----GAGCATGCC---TTAAAACTT-AAACAT-ATATTC---------TAA-GTATTGAAA-GG--CCATAATTCTGTATAAA-ATCAAAATA-GA-G--TTA-TCCAACTTG-G-CCCCTGGAGAC-CTC--TTT--TTGGTCAAGAACACTC-ACATGAAGTT-----AAAATTAT-GTATCTGTTAGTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACATTTATATTCATCAATGTATATAAATGTATGAGTAGTGCTTACTGAGTTATGTGTATGCTTAATTGCTTTAACCAAA
Unaligned ( gi|21 ): AGTGAAAATGATTATCACGAAATAGAACTTA