lowQualScore : 11111 11 1 1 1 22222 111111111111111 1111 11
lowQualScore : 55 4444 0 2 2 33 2 33 333 44444 4 2 2 2 55555 2 2 2 33 2 33 2 55 2 0 2 4444 9 2 555555 4 2 88888 333 2 2 0 2 2 22 2 6 22 2 22 2 22 66 4 22 22 4444 1 333 555555 1 66666666 777777 333 22 333 3333 22 33333 1 111111111111111 333 1111 1 777777777 11 55
lowQualScore : .. .... . . . .. . .. ... ..... . . . . ..... . . . .. . .. . .. . . . .... . . ...... . . ..... ... . . . . . .. . . .. . .. . .. .. . .. .. .... . ... ...... . ........ ...... ... .. ... .... .. ..... . ............... ... .... . ......... .. ..
lowQualScore : 99 5555 1 7 2 11 2 11 999 00000 7 5 1 4 99999 9 5 4 22 4 44 4 88 2 5 1 5555 7 0 888888 9 0 55555 555 0 0 2 8 1 88 2 7 88 0 88 0 88 00 2 88 66 0000 9 222 222222 8 66666666 000000 222 55 222 9999 44 99999 9 999999999999999 333 1111 9 666666666 00 99
consensus : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAGAGA----CCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAA-TCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ANTTTTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--A-AAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--CGAGGATTAT-T---------------TA---TAACCGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
Reference ( gi|4 ) : GTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAGAGT----CTCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAA-TCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ATTTTTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--A-AAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAT--TGAGGATTAT-T---------------TA---TAACCGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|5 : GTGTAAC-CCCACCATTGATTTTTGTTCTTAATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAAAGGGT----CCCAAATGAAAAAAAGTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ACAAGAG-AT-TGTTT-TT-CTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAA-TCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ATTTT-TTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--A-AAATAC--ATCAATAA-TGACATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAT--TGAGGATTAT-T---------------TA---TAACCGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|3 : GTGTAAC-CCCACCACTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAGAAT----CCCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTAGTCAACCTCTGCATTATCAATATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGA----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAA-TCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-AATTGTTTTTTCTTAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--A-AAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--TGAGGATTAT-T---------------TA---TAACCGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|6 : GTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATGATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAGAAT----CCCAA-TGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TTATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTT--GCTCAGT-TTGT----ACACTGGTGACAAAGTGAAAGAAGACTTCCGAAA-TCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ATTTT-TTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAACTGTTC--A-AAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTCAAA---T------AA-G--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--TGAGGATTAT-G---------------TA---TAACCGTCAT---CATG-C---------GACTTCCCCACAGAAGCACTTCCTTTTT-GCAATGGTGG-TACTATgcct
gi|2 : GTGTAAT-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TAA-AGGCT--TGTC---ATTCATAGAAAAT----CCCAATTGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-GGATGAGAAAA-GTAGGGGT--CA-TTTGTCAT-ATTAGAG-A--TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAA-TCAT------GTATTCAT-ACCC-----AA---ATTT-CCAAGCATC-AAATTTTTTTTCTAAA-TGCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--A-AAATAC--ATCAATAA-TGCCATTCA--AATAAAAA-AA--A--T----GAGC-ATTAAAA---T------AA-A--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--TGAGGATTAT-T---------------TATATTAACCGCCAT---CATC-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTATg
gi|7 : GTGTAAA-ACCACCACTGATTTTTGTTGTCTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGGA--TGTC---ATTCATAGAGAAT----CCCAAATGACAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGACAAAA-GTAGGGGC--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGC----ACACTGTTGAAAAAGTGAAAGTAGAGTTCCGAAA-TCAT------GTATTCAT-ACCG-----CA---ATTT-CCAACCA---ATTTT----TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--A-AAATAC--ATCAATAA-TGTCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-A--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--CGAGGATTAT-T---------------TA---TAACCGTCAT---TATG-C---------AACTATCCCACGGAAGCACTTCCTGTTT-CCAATGGTGG-TTCTAg
gi|1 : GTGTAACACTCACCGTCGATTTTTGTTCTTTGTTCTAT----AGTAAAAAATAAAA-GTT--TAA-AGACT--TGTC---ATTTATACAGAGA----CCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGACAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAT-A---TTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCAAAA-TCAT------GTATTCCC-ACCC-----AA---AAAT-TCAAACATC-A--TTTTTTTTCTTAA-TCCACGATTCGAAC--GCGACAATGCTTTAAAAATGTTC--C-AAATAC--ATCAATAA-TGCCATTTA--AAT-AAAACAA--A--T----GAGC-GTTCAAA---T------AA-G--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--CAAGGATTAT-T---------------TA---TAACCGCCAT---TAAGACCTAAAAACAGACTACCCCACGAAAGCACTTCCTTTTTCCCAATGGAGG-TACTAT
gi|11 : GTATAAC-CCCACCATTGATATTTCTGCTTTATTCTAT----AGTAAATAATACAA-GTT--TGA-AGGTT--TGTC---ATTCGTAGAGAGA----CCCAAATGAAAGAA-GTGAAACTGA-CATT-----TTACTGTTCGTCAACCTCTGCACTATCAAAATA-TGATGAGGAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-A--TTTTT-TTTCTGCTCAGT-GTGT----A----------------------GACTTCCAAAA-TCAT------GTACTCAT-ACCC-----CA---ATTT-CCATACATC-AGTTTTTTATTCTAAA-TTCACAATTCAAAT--ATGACAGTGCTTTCAAAATGTTC--A-AAGTACTGTTCAATAA-CGCCATTTA--AAT-AAAAGAA--A--T----GAGC-ATTAAAA---T------AAGG--------GAAAA------GGCA---TTTT--T---AAA----GAAG--AAGAAA--CAAAGATTAT-A---------------TA---TAACTGCCAT---TATG-C---------GACTACCTC-----AGCACTTCCTTTTC-CCAATAGTGGTTACTATgct
gi|10 : agGTGTAAG-CCCACCATAGATATTTGTTCTTTTTTCTAT----AGTATGTAACAAAA-GTT--TGA-AGGCT--TGTC---TTTCACCGAGAGA----CCAAAATAAAAGAG-GTGAAACTTA-CATT-----TTATTGTTTGTTAACCTCTGCACTA-CTAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAACTG-A--TTTAT-TTTCTGTTCAGT-ATGT----GCGCTGTTGACAAAGTGAAAGTATACTGTCGAAA-TCAT------GTATTCAT-A---------------TT-CCAAACATCAATTATTTTTTTCTTTA-TTCACAATTCAAAC--ATGAGTATGCTTTCAAAATGTTC--A-AAATAC--ATCAAAAA-TGCTTTTCA--AATAAAAA-AA--A--T----GAGC-ATTAAAT---T------TA-G--------GAAAA------TGCA----TTT--T---AAA----GAAG--AAACA-----AGGATTAT-T---------------TA---TAATCG---------------------------CTCCACGGAAGCATTTTATTTTT-CCAAAGGTGG-TTCTATg
gi|14 : gGTGTTAG-CCCACCATTGATTTTTATTTTTTGTTCTGC----AGTAAA----AAAA-GTT--TAC-ATACT--TGTC---ATACAGAGAG-GT----ACCAATTG---------------TATCATT-----TTATTGTATGTCAATCACTGCACTACCAAAATT-TGATGAGAAAA-ATAAGGGT--AA-TGTGTCAT-----GAG-AT-TTTTT-TT-CTATTCAAT-ATAT----ATACTGTTGACAAAGTGAAAGCAGACTTCCGTAA-TCCT----------TCAT-ACCC-----CA---ATTT-CCAAGCATC-AGTTTCTATTTCTAA--TTAACAATTTAAAC--ATGACAGTGCTTTCAAAGTATTC--A-AAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAAA-ATTAAAA---T------AA-A--------GAAAA------TGCA---TTTT--T---AAA----GAAG--AAGAAA--CAAGGATTAT-T---------------TA---TAACTGTCAT---TATG-C---------GACTACCCCACAGAAGCAGTTgcct
gi|12 : GTATAAG-CTCACTATAAATTCGTTATCTTTACACTATTAATAATAAATAA-AGAA-ATA--TGC-ATGCT--TGTC---ATTCACAGACAGA----CTGAAATGAAAGAA-GTGCACCTTA-CATT-----GTATTGTTTGCCAACCTCTGCATTACCATG-TACTGATGAGGAGA-GTAGGGAG--TA-CGTTTCAT-CCAAGAG-ATGTTCTT-TTTCTGTTCAGT-GCGT----ACACTGTTGACAAAGCAAAAGTAGACATCAGAAA-GCAT------GTATTCAT-GTCC-----CA---ATTT-CCAAGCATT-ATTTTT---------A-CTTACATTTCAAAC--ATGACAACGCT---------TTC--ATAAATAC--ATCAAATA-TACCATTCA--AGT-AAAA-AA--A--T----AAGC-ATTAAAA---T------AA-G--------GAAAA------TGCA---ATTT--T---GAA----TAAG--AAGAAA--AAATGATTAT-T---------------TA---TAACCGCCAT---TAT---------------------------GCATTTCTCGTTT-CCAATGGTGG-TGCTATt
gi|17 : GTGTAAC-C-----ATTGATTTTTGTTCTTTGTTCTAT----AGTAAA----AAAACGTT--TTA-AGGCT--TTTC---ATTCATTGAGAGA----CCCAAATGAAAGAA-GTGAAACTTA-CATT-----TAAATGTTTGTCAACCTCTGCACTACTAAAATA-TGATGAGAAAA-GTAGCAGTTATA-TATGTC-T-TTAAAAG-A--TTTTT-TTTATGTTAAGT-GTGT----ACACTGTTGTCAAAGTGAAAGTAAACTTCTGAAA-TCAT------ATATTCAT-ACCC-----TG---ATTC-CCAAGCA---------TTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTT--A-AAATAT--ATCAGTAA--GCCCTCTATTAAT-AAg
gi|29 : gGTGTTAC-CTCACCATTGATTTTTGTTTTTTATTCTAT----AGTAAATACTAAAA-GTT--TGA-AGTCT--TGTCACAATTCA
gi|9 : ggTGTAAG-CCCATCATTAATTATTGTACTATATTCTAT----AGTAGATAATAAAA-GTT--CGA-AGGCT--TGTA---AATCATAGAGAGAGAGACCCAAATGATAGAA-GTAAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAAGAGG--TA-TATGTCAT-ATAAGAG-A--TTATT-TTTCTGCTCAGT-GTGT----ACACTGCTGACAACGTGAAAGTAGACTTCTGAAA-TCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A--TTTTTTTTCTAAA-TTCACTATTCAAAC--ATAACAATGCTTTCAAAATGTTTTAA-AAAAAC--ATCAATAA-TGTCATTCA--AA--------------------------TAAAA---T------AT-G--------G-AAA------TGCA---ATTT--T---AAA----GAAG--GAGAAA--CGAGGATTAT-T---------------TA---GATCCGCCAT---TATA-C---------GACTACCCCACGGAAGCATTTCCTGTTT-CCAATGATGG-TACTa
gi|13 : TGTAAT-TCCACCGTTGATTTATGTTCTTTATTCTAT----AGTAAATAATAAAA-AAA--TGA-ACGCT--TGTC---ATTCATAGAGAG-----------------------------A-CATT-----TTACTGTTTGTCAACCTATGTACTACCAAAATA-TGAGGGGAAAT-GAAGGGGT--CA-T-TGTCAT-ATAAGAA----TTTTT-TTTCTGCTCAAT-GTGT----ACACTGTTGTCAAAGTGAAAGTAGACTTCCGGAA-GCAT------GGATTCATTATTCATA--TA---ATTTTCCAAGCATC-AATCTTTTTTTA-AAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--A-AAATAC--ATCAATAA-TGCCATTCA--TAT--AAA-AA--A--T----GAGC-ATTAAAC---G------AA-G--------TAGAA------TGCA---TTTT--T---AAA----GAAG--AAAAA----AA-----AT-C---------------TA---TAACCGCCAT---TATG-C---------GACTACCCCATGAAAGCACGTCCTTTTT-ACAATGGTGG-TACTATttgcc
gi|16 : TGTAAG-TCCATCATTGATTATTGTACTTTATTTTGT----AGTAAATAA-AAAA-GT-----ACATGCT--TGGC---ATTCATTGAATGA----CCCAAA-GAAAGGA-GTGAAACTTA-CATT-----TTATTGTTTGCCAACTTTTGAACTTCCAAAATC-TGATTAGAAAA-TCAGGGGT--CA-CTTAGCAT-CCAAGAT-A--TTTTG-TTTCTGTTCAGTGGGGT----GAAATGTCGAC-AAGTAAAAATAGACGCTAGAAA-TCAT------GTATTCAT-ACCA-----CA---ATTT-CCAAGCATC-A
gi|30 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagaTGTAAA-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCTCCTGTC---atgattatttataaccgccattatgcctgtatccaatggtaatgctttgcaa
gi|32 : TGTTAG-CTCACCATAGATTTTT-TTTATTATTCTAT----AGTAAATAg
gi|19 : aaaga-CCCACCATTGATTTGTGTTCTTTATTTCAA----AATAAATAA-ACAC-CTTCTTGC-GTGCA--TGTC---ATTTATTGAAGGA----CCTAAATGAATGAT-ATGAATCTTT-CATT-----TTATTGTTTGTCAACCTA-GCA-TATAAAAA
gi|8 : gtatgCCACCATTGATTTTTTGTGTGTATT-----------AAA-AATAG-----T--TAT-ATGTT--TGTC---ATTCATAGAGAGA----CTCAAATGAAAGAA-GTGAAACTCA-CATTAACTTTTATTATTTGTCAGCATCTGCACTATCAAAA-A-TGATGAAAAAAAGTAGGGGC--CA-TGTGCCAT-CGAAGAGTGT-TTTTT-TTTCTGCTCAGT-GTCT----ACACTGTTGACAAAGTGAAAATCGACTTCCGTAA-TCAT------GTATTCAT-ACCC-----CG---ATTT-CAAAGCATC-AATTCTTGTTTATAAA-TTCACACTTAAAAC--ATAACAATGCTTTCACAATGTTC--A-AAATAC--ATCAATAA-TACCATTCA--AAT---AA-AA--A--T----GAAC-ATTAAAA---T------AA----------GAAAA------TGTA---TATT--CAAAAAA----GAAG--AAGAAA--CAATGATTATATATATATATATATATATA---TAACCGCTTT---TATG-T---------GATTATCCCACGGCAGCACTGCTTATTT-aaatctcttgtgtacactgttgacaaagtgaaagtagacgtcaaaaagttgtcatcttaattcaccattcaaatacgacaatgctttcaaaatgttcaaaatacatcaacaatgccattcaaataaaataaacattaaaataaggaaaatgcattattaaaaagg
gi|15 : TA-CATT-----TTAC---------ACCT--GCAGGG-CAAAATT-TCATTAAAAAA-GTAGGGTT--TAATTTATCATCATT-GAG-TT-GTTTTGTTTGTATT---T-GTGCTTAAACACTGTTGATTAAGTGAAAGTACACTTTC-AAA-TAGT------GTATTCAT-ACCCACCCACACTCATTT-CCAGGCA-C-AATTTCTTTTTCTAAA-TTCCCAATTCAAGCATATGACAATGCTTTCCGTTTGTTC--C-AAACAG--AATAATAAGTGCCATTTA--AAC-CACA-AATGA--TCACCGAGCTAGTAAAAGGTC------AA-GTCTTTTAAGAATA------TGCA---TTTT--A---AGA----TAAGACAAAAATAAAGAGGACTAcctat
gi|18 : ttacatgattgtgaAAA-GTAGGGGT--CA-TGTTTCAT-CCAAAAT-AC-TGTTC-T--CTATTCAGT-GTGT----ACACTGTTGACAAGGTGAAAGTAGTCGTCGGAAA-TCATTTGCATGTATTCAT-ATCC-----CA---ATTT-CCAAGCATC-ACTTTTTTCTTCTAAA-TTCATAATTCAAAC--ATGACAATATGTTCAAAATGTTC--A-AAATA------GATAA-CGCCATTCA--AGT-CACA-AA--A--T----GAGC-ATTAAAA----------AT-G--------GACAT------TGCA---TTTT--T---AAT----TAAG--AAAAAA--CCATGATTA--C---------------TG---TCACCGCCAT---------------------TACCCAACGGAAACATTTTCTGTTT-CCAATGTTGG-cacggtagttatggccaaggtcaccattatgttact
gi|22 : TTTT-TTTCT-CTAA-----------AAATTGTAGACATAGTTAAATTAGACTT---AAA-T-GT------AA--TCAT-ACTC-----TA---ATTT-CCA--CATC-ATTTATTT----TAAAGTTCACAAAT-AAAC--ATGATTAT--TTTTAA--TATTC--A-AAAAAT--ATAAATAA-T-CCA--CA--AA--ATAA-CA--A--T----------TTAAAA---T------AA-G--------GACAA------T-TATTCTTTT--T---AAA----AAAG--AAtgttgtgc
gi|19 : ggT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACGTCAAAAAGT--T------G---TCAT---CT-----TA---ATT-------CACC-ATT------------------CAA-----AT--ACGACAATGCTTTCAAAATGTTC--A-AAATAC--ATCAACAA-TGCCATTCA--AAT----A-AA--A--T----AAAC-ATTAAAA---T------AA-G--------GAAAA------TGCA---TTAT--T---AAA----AAGG--acaa
gi|20 : gtatgcccaccattgatttgtgttctttatttcaaaataaataaacaccttcttgcgtgcatgtcatttattgaaggacctaaatgaatgatatgaatctttcattttattgtttgtcaacctagcatataaaaaaaatctctCCGAAA-TCAT------GTATTCAT-ACCC-----CA---ATTT-TCAAGTATC-A--TATTTTTTCTAAA-TTCATATTTCAAAC--AAGACAATGCT---------TTC--A-A----------AATAA-TACCATT------T-AAAA-AA--A--T----GAGC-ATTAAAA---TTTTTTAAA-A--------TAAGATTTTTTTGCA---TTTT--T---AAA----GAAG--AAGAAA--AAAGGATTAT-T---------------TA---TACTTGCCAT---TATG-C---------GACTACCCAACGGAAGCACTTCCTTTTC--CAATGGTGG-
gi|21 : TCACAATTCAAAG--ATGATTATGCTGTCAAAATGTTC--A-AAATAC--ATCAATAA-TGTAATTCA--AAT-AAAA-AA--AAAT----GAGC-ATTAAAA---T------GA-G--------GAAAA------TGCA---TTTTAAT---AAA-----AAG--AAGAAA--CGAGGATTAT-T---------------TA---CAACCGCCAT---TATG-C---------GACTTCCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTttctgtgc
gi|26 : --A--T----GAGC-AATAAAA---T------AA-G--------GAAAAC-----TGCA---TTTT--T---AAATAAAGCAG--AAGCAA--CAAGGATTAT-T---------------TA---TA---------------------------ACTTCCCCATGGAAGCACTTCCTTTTT-CCAATGGTGG-ctgc
gi|27 : --T----GAGC-ATTAAAA---T------AA-G--------GGAAA------TGCA---TTTT--T---AAA----GAAG--AAACA-----AGGATTAT-T---------------TA---TAACCGCCAT-----------------------------GGAAGCACTTCCTTTTT-CCAATGGTGG-TACTATttct
gi|25 : AANN---N------NN-N--------NNNNA------TGCA---TTTT--T---AAA----GAAG--AAGAAT--TGAGGATTAT-T---------------TA---CAACCGCCATTTATATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTATgc
gi|16 : --AAGCAT--CAATGATTAT-T---------------TA---TAACCGCCAT---TATG-C---------gc
gi|24 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagatgtaagtccatcattgattattgtactttattttgtagtaaataaaaaagtacatgcttggcattcattgaatgacccaaagaaaggagtgaaacttacattttattgtttgccaacttttgaacttccaaaatctgattagaaaatcaggggtcacttagcatccaagatattttgtttctgttcagtggggtgaaatgtcgacaagtaaaaatagacgctagaaatcatgtattcataccacaatttccAGAAA--CAAGGATTAT-T---------------CA---TGGTAGCCAT---TATG-A---------GACTAACCCACGGAAGCGCATCCTGTTT-CCAATTGTGG-ctgtatccaatggtaatgctttgcaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): ACAAAACTCTGATCTATTTTACACACTTTTGACCAACACCAGCTGTGTTTATATCATTTCATGTCAGTATTATGCACGCTTTACGGCTTATACTGCGGTTACCATGCTAACGATTTAAAGATATTAA
Unaligned ( gi|28 ): TGTGTCTTATGACATGAAGAAGTTATTATTCAGTTATGAAGCAAATGTGATAAATTGTCATTGCATAACATTCTAAATCAGTTATA
Unaligned ( gi|31 ): TTTAAATTGTGTTAATTATACTACAATAAACATACGGTAATTTCGATAGTTTTGAACTGATCAG
Unaligned ( gi|33 ): TTTGCATTCATTGGCCCCGTATTGCCAAAAGGATACATATTTAA
Unaligned ( gi|34 ): ATTTAAGTTTTATCATCAAAAAGTTTATATA
Alignments
lowQualScore : 1 11111111111111111111111
lowQualScore : 55 4444 2 2 22 2 22 333 5555 2 2 55555 2 2 33 2 22 2 99 2 5 2 4444 555555 1 88888 333 1 3 1 2 22 22 22 1 22 33 4 22 44 3333 1 333 555555 1 66666666 1 555555 333 22 333 3333 1 333 22222222222222222222222 333 555555 333 1 777777777 2 2
lowQualScore : .. .... . . .. . .. ... .... . . ..... . . .. . .. . .. . . . .... ...... . ..... ... . . . . .. .. .. . .. .. . .. .. .... . ... ...... . ........ . ...... ... .. ... .... . ... ....................... ... ...... ... . ......... . .
lowQualScore : 22 2222 1 1 99 1 99 777 0000 4 2 66666 4 2 11 2 77 2 00 1 2 0 2222 555555 9 11111 333 9 5 9 0 66 66 66 9 66 33 0 66 33 9999 8 000 000000 7 33333333 7 000000 000 44 000 7777 7 000 77777777777777777777777 000 000000 000 7 000000000 0 1
consensus : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCA-TT-TTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
Reference ( family-1480 ) : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCANTT-TTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|1 : GTGTAACACTCACCGTCGATTTTTGTTCTTTGTTCTAT----AGTAAAAAATAAAA-GTT--TAA-AGACT--TGTC---ATTTATACAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGACAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAT-A---TTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCAAAATCAT------GTATTCCC-ACCC-----AA---AAAT-TCAAACATCA--T-TTTTTTTCTTAA-TCCACGATTCGAAC--GCGACAATGCTTTAAAAATGTTC--CAAATAC--ATCAATAA-TGCCATTTA--AAT-AAAACAA--A--T----GAGC-GTTCAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT---TAAGACCTAAAAACAGACTACCCCACGAAAGCACTTCCTTTTTCCCAATGGAGG-TACTAT
gi|10 : GTGTAAG-CCCACCATAGATATTTGTTCTTTTTTCTAT----AGTATGTAACAAAA-GTT--TGA-AGGCT--TGTC---TTTCACCGAG----AGACCAAAATAAAAGAG-GTGAAACTTA-CATT-----TTATTGTTTGTTAACCTCTGCACTACTAAA-TA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAACTG-AT-TTATT-TT-CTGTTCAGT-ATGT----GCGCTGTTGACAAAGTGAAAGTATACTGTCGAAATCAT------GTATTCAT-A---------------TT-CCAAACATCAATTATTTTTTTCTTTA-TTCACAATTCAAAC--ATGAGTATGCTTTCAAAATGTTC--AAAATAC--ATCAAAAA-TGCTTTTCA--AAT-AAAA-AA--AA-T----GAGC-ATTAAAT---T------TA-G--------GAAAA-T------GCA---TTTT-------------AAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAT------CGCT---------------------------CCACGGAAGCATTTTATTTTT-CCAAAGGTGG-TTCTATgct
gi|11 : gGTATAAC-CCCACCATTGATATTTCTGCTTTATTCTAT----AGTAAATAATACAA-GTT--TGA-AGGTT--TGTC---ATTCGTAGAG----AGACCCAAATGAAAGAA-GTGAAACTGA-CATT-----TTACTGTTCGTCAACCTCTGCACTATCAAAATA-TGATGAGGAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGT----A----------------------GACTTCCAAAATCAT------GTACTCAT-ACCC-----CA---ATTT-CCATACATCAGTT-TTTTATTCTAAA-TTCACAATTCAAAT--ATGACAGTGCTTTCAAAATGTTC--AAAGTACTGTTCAATAA-CGCCATTTA--AAT-AAAAGAA--A--T----GAGC-ATTAAAA---T------AAGG--------GAAAA-G------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAAGATTAT-------A---------------TA---TAAC------TGCCAT---TATG-C---------GACTACCTC-----AGCACTTCCTTTTC-CCAATAGTGGTTACTATgcct
gi|12 : agGTATAAG-CTCACTATAAATTCGTTATCTTTACACTATTAATAATAAATAA-AGAA-ATA--TGC-ATGCT--TGTC---ATTCACAGAC----AGACTGAAATGAAAGAA-GTGCACCTTA-CATT-----GTATTGTTTGCCAACCTCTGCATTACCATG-TACTGATGAGGAGA-GTAGGGAG--TA-CGTTTCAT-CCAAGAG-ATGTTCTT-TTTCTGTTCAGT-GCGT----ACACTGTTGACAAAGCAAAAGTAGACATCAGAAAGCAT------GTATTCAT-GTCC-----CA---ATTT-CCAAGCATTATTT-TT---------A-CTTACATTTCAAAC--ATGACAACGCTTTCA------T----AAATAC--ATCAAATA-TACCATTCA--AGT-AAAA-AA--A--T----AAGC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---ATTT--T---GAA----TAAGA-AGAAAA---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TAT---------------------------GCATTTCTCGTTT-CCAATGGTGG-TGCTATg
gi|13 : TGTAAT-TCCACCGTTGATTTATGTTCTTTATTCTAT----AGTAAATAATAAAA-AAA--TGA-ACGCT--TGTC---ATTCATAGAG----AGAC--------------------------ATT-----TTACTGTTTGTCAACCTATGTACTACCAAAATA-TGAGGGGAAAT-GAAGGGGT--CA-T-TGTCAT-ATAAGAA----TTTTT-TTTCTGCTCAAT-GTGT----ACACTGTTGTCAAAGTGAAAGTAGACTTCCGGAAGCAT------GGATTCATTATTCATA--TA---ATTTTCCAAGCATCAATC-TTTTTTTA-AAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATAC--ATCAATAA-TGCCATTCA--TAT--AAA-AA--A--T----GAGC-ATTAAAC---G------AA-G--------TAGAA-T------GCA---TTTT--T---AAA----GAAGA-AAAAA-----A-----AT-------C---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCATGAAAGCACGTCCTTTTT-ACAATGGTGG-TACTATg
gi|14 : GTGTTAG-CCCACCATTGATTTTTATTTTTTGTTCTGC----AGTAAA----AAAA-GTT--TAC-ATACT--TGTC---ATACAGAGAG----GTACC--AAT---------TG-----TATCATT-----TTATTGTATGTCAATCACTGCACTACCAAAATT-TGATGAGAAAA-ATAAGGGT--AA-TGTGTCAT-----GAG-AT-TTTTT-TT-CTATTCAAT-ATAT----ATACTGTTGACAAAGTGAAAGCAGACTTCCGTAATCCT----------TCAT-ACCC-----CA---ATTT-CCAAGCATCAGTT-TCTATTTCTAA--TTAACAATTTAAAC--ATGACAGTGCTTTCAAAGTATTC--AAAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAAA-ATTAAAA---T------AA-A--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------TGTCAT---TATG-C---------GACTACCCCACAGAAGCAGTT
gi|15 : TA-CATT-----TTAC---------ACCT--GCAGGGC-AAAATT-TCATTAAAAAA-GTAGGGTT--TAATTTATCATCATT-GAG-TT-GTTTTGTTTGTATT---T-GTGCTTAAACACTGTTGATTAAGTGAAAGTACACTTTC-AAATAGT------GTATTCAT-ACCCACCCACACTCATTT-CCAGGCA-CAATT-TCTTTTTCTAAA-TTCCCAATTCAAGCATATGACAATGCTTTCCGTTTGTTC--CAAACAG--AATAATAAGTGCCATTTA--AAC-CACA-AATGA--TCACCGAGCTAGTAAAAGGTC------AA-GTCTTTTAAGAATA-T------GCA---TTTT--A---AGA----TAAGACAAAAATAAAGAGGACTACACGGTAGT---------------TA---TGGCCAAGGTCACCAT---TATG-T---------TACTt
gi|16 : ttacatgattgtgaTGTAAG-TCCATCATTGATTATTGTACTTTATTTTGT----AGTAAATAA-AAAA-GT-----ACATGCT--TGGC---ATTCATTGAA----TGACCCAAA-GAAAGGA-GTGAAACTTA-CATT-----TTATTGTTTGCCAACTTTTGAACTTCCAAAATC-TGATTAGAAAA-TCAGGGGT--CA-CTTAGCAT-CCAAGAT-A--TTTTG-TTTCTGTTCAGTGGGGT----GAAATGTCGAC-AAGTAAAAATAGACGCTAGAAATCAT------GTATTCAT-ACCA-----CA---ATTT-CCAAGCATCAATG-ATTATTTATAA
gi|16 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagaA-AGCATC---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------ccgccattatgcctgtatccaatggtaatgctttgcaa
gi|17 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagatgtaagtccatcattgattattgtactttattttgtagtaaataaaaaagtacatgcttggcattcattgaatgacccaaagaaaggagtgaaacttacattttattgtttgccaacttttgaacttccaaaatctgattagaaaatcaggggtcacttagcatccaagatattttgtttctgttcagtggggtgaaatgtcgacaagtaaaaatagacgctagaaatcatgtattcataccacaatttccGTGTAA------CCATTGATTTTTGTTCTTTGTTCTAT----AGTAAA----AAAACGTT--TTA-AGGCT--TTTC---ATTCATTGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TAAATGTTTGTCAACCTCTGCACTACTAAAATA-TGATGAGAAAA-GTAGCAGTTATA-TATGTC-T-TTAAAAG-A--TTTTT-TTTATGTTAAGT-GTGT----ACACTGTTGTCAAAGTGAAAGTAAACTTCTGAAATCAT------ATATTCAT-ACCC-----TG---ATTC-CCAAGCA---------TTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTT--AAAATAT--ATCAGTAA--GCCCTCTATTAAT-AActgtatccaatggtaatgctttgcaa
gi|18 : gAAA-GTAGGGGT--CA-TGTTTCAT-CCAAAAT-AC-TGTTC-T--CTATTCAGT-GTGT----ACACTGTTGACAAGGTGAAAGTAGTCGTCGGAAATCATTTGCATGTATTCAT-ATCC-----CA---ATTT-CCAAGCATCACTT-TTTTCTTCTAAA-TTCATAATTCAAAC--ATGACAATATGTTCAAAATGTTC--AAAATA------GATAA-CGCCATTCA--AGT-CACA-AA--A--T----GAGC-ATTAAAA----------AT-G--------GACAT-T------GCA---TTTT--T---AAT----TAAGA-AAAAAC---CATGATTA--------C---------------TG---TCAC------CGCCAT---------------------TACCCAACGGAAACATTTTCTGTTT-CCAATGTTGG-
gi|19 : GTATG-CCCACCATTGATTTGTGTTCTTTATTTCAA----AATAAATAA-ACAC-CTTCTTGC-GTGCA--TGTC---ATTTATTGAA----GGACCTAAATGAATGAT-ATGAATCTTT-CATT-----TTATTGTTTGTCAACCTgttgtgc
gi|19 : T-GTGT----ACACTGTTGACAAAGTGAAAGTAGACGTCAAAAA----------GTTGTCAT---CT-----TA---ATT-------CACC----------------A-TTCA-------AAT--ACGACAATGCTTTCAAAATGTTC--AAAATAC--ATCAACAA-TGCCATTCA--AAT----A-AA--A--T----AAAC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---TTAT--T---AAA----AAGGagcatataaaaaaaatctcttgtgtacactgttgacaaagtgaaagtagacgtcaaaaagttgtcatcttaattcaccattcaaatacgacaatgctttcaaaatgttcaaaatacatcaacaatgccattcaaataaaataaacattaaaataaggaaaatgcattattaaaaagg
gi|2 : gtatgcccaccattgatttgtgttctttatttcaaaataaataaacaccttcttgcgtgcatgtcatttattgaaggacctaaatgaatgatatgaatctttcattttattgtttgtcaacctagcatataaaaaaaatctctGTGTAAT-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TAA-AGGCT--TGTC---ATTCATAGAA----AATCCCAATTGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-GGATGAGAAAA-GTAGGGGT--CA-TTTGTCAT-ATTAGAG-A--TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----AA---ATTT-CCAAGCATCAAAT-TTTTTTTCTAAA-TGCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATAC--ATCAATAA-TGCCATTCA--AATAAAAA-AA--A--T----GAGC-ATTAAAA---T------AA-A--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TATATTAAC------CGCCAT---CATC-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|20 : CCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-TCAAGTATCA--T-ATTTTTTCTAAA-TTCATATTTCAAAC--AAGACAATGCTTTCAAAAT---------------------AA-TACCATT------T-AAAA-AA--A--T----GAGC-ATTAAAA---TTTTTTAAA-A--------TAAGA-TTTTTTTGCA---TTTT--T---AAA----GAAGA-AGAAAA---AAGGATTAT-------T---------------TA---TACT------TGCCAT---TATG-C---------GACTACCCAACGGAAGCACTTCC-TTTT-CCAATGGTGG-TTCTGTg
gi|21 : TCACAATTCAAAG--ATGATTATGCTGTCAAAATGTTC--AAAATAC--ATCAATAA-TGTAATTCA--AAT-AAAA-AA--AAAT----GAGC-ATTAAAA---T------GA-G--------GAAAA-T------GCA---TTTTAAT---AAA-----AAGA-AGAAAC---GAGGATTAT-------T---------------TA---CAAC------CGCCAT---TATG-C---------GACTTCCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTgc
gi|22 : TTTT-TTTCT-CTAA-----------AAATTGTAGACATAGTTAAATTAGACTT----AA--AT------GTAATCAT-ACTC-----TA---ATTT-CCA--CATCATTT-ATTT----TAAAGTTCACAAAT-AAAC--ATGATTAT-TTTT---AATATTC--AAAAAAT--ATAAATAA-T-CCA--CA--AA--ATAA-CA--A--T----------TTAAAA---T------AA-G--------GACAA-T-------TATTCTTTT--T---AAA----AAAGA-Actgc
gi|24 : gg-AGAAAC---AAGGATTAT-------T---------------CA---TGGT------AGCCAT---TATG-A---------GACTAACCCACGGAAGCGCATCCTGTTT-CCAATTGTGG-acaa
gi|25 : aaatacattcgattcttaacaaaaaacaaatgttctaaagcattcattcAANN---N------NN-N--------NNNNA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---CAAC------CGCCATTTATATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|26 : --A--T----GAGC-AATAAAA---T------AA-G--------GAAAACT------GCA---TTTT--T---AAATAAAGCAGA-AGCAAC---AAGGATTAT-------T---------------TA---TAAC-----------T---T-------------------CCCCATGGAAGCACTTCCTTTTT-CCAATGGTGG-TTCTgc
gi|27 : --T----GAGC-ATTAAAA---T------AA-G--------GGAAA-T------GCA---TTTT--T---A-------AAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT-----------------------------GGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|29 : GTGTTAC-CTCACCATTGATTTTTGTTTTTTATTCTAT----AGTAAATACTAAAA-GTT--TGA-AGTCT--TGTCACAATTCAgc
gi|3 : ggGTGTAAC-CCCACCACTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AATCCCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTAGTCAACCTCTGCATTATCAATATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGA----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCAATT-GTTTTTTCTTAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTATa
gi|30 : TGTAAA-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCTCCTGTC---gcct
gi|32 : TGTTAG-CTCACCATAGATTTTT-TTTATTATTCTAT----AGTAAATAg
gi|4 : aaagaGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGTCTCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATCATTT-TTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|5 : GTGTAAC-CCCACCATTGATTTTTGTTCTTAATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAAAG----GGTCCCAAATGAAAAAAAGTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ACAAGAG-AT-TGTTT-TT-CTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATCA-TT-TTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATAC--ATCAATAA-TGACATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|6 : GTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATGATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----A-ATCCCAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TTATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTT--GCTCAGT-TTGT----ACACTGGTGACAAAGTGAAAGAAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCA-TT-TTTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAACTGTTC--AAAATAC--ATCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTCAAA---T------AA-G--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------G---------------TA---TAAC------CGTCAT---CATG-C---------GACTTCCCCACAGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|7 : GTGTAAA-ACCACCACTGATTTTTGTTGTCTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGGA--TGTC---ATTCATAGAG----AATCCCAAATGACAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGACAAAA-GTAGGGGC--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGC----ACACTGTTGAAAAAGTGAAAGTAGAGTTCCGAAATCAT------GTATTCAT-ACCG-----CA---ATTT-CCAACCA--A-----TTTTTTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATAC--ATCAATAA-TGTCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AA-A--------GAAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGTCAT---TATG-C---------AACTATCCCACGGAAGCACTTCCTGTTT-CCAATGGTGG-TTCTAg
gi|8 : CCACCATTGATTTTTTGTGTGTATT-----------AAA-AATAG-----T--TAT-ATGTT--TGTC---ATTCATAGAG----AGACTCAAATGAAAGAA-GTGAAACTCA-CATTAACTTTTATTATTTGTCAGCATCTGCACTATCAAAA-A-TGATGAAAAAAAGTAGGGGC--CA-TGTGCCAT-CGAAGAGTGT-TTTTT-TTTCTGCTCAGT-GTCT----ACACTGTTGACAAAGTGAAAATCGACTTCCGTAATCAT------GTATTCAT-ACCC-----CG---ATTT-CAAAGCATCAATT-CTTGTTTATAAA-TTCACACTTAAAAC--ATAACAATGCTTTCACAATGTTC--AAAATAC--ATCAATAA-TACCATTCA--AAT---AA-AA--A--T----GAAC-ATTAAAA---T------AA----------GAAAA-T------GTA---TATT--CAAAAAA----GAAGA-AGAAAC---AATGATTATA------TATATATATATATATATA---TAAC------CGCTTT---TATG-T---------GATTATCCCACGGCAGCACTGCTTATTT-CCTAT
gi|9 : TGTAAG-CCCATCATTAATTATTGTACTATATTCTAT----AGTAGATAATAAAA-GTT--CGA-AGGCT--TGTA---AATCATAGAGAGAGAGACCCAAATGATAGAA-GTAAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAAGAGG--TA-TATGTCAT-ATAAGAG-A--TTATT-TTTCTGCTCAGT-GTGT----ACACTGCTGACAACGTGAAAGTAGACTTCTGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCA--T-TTTTTTTCTAAA-TTCACTATTCAAAC--ATAACAATGCTTTCAAAATGTTTTAAAAAAAC--ATCAATAA-TGTCATTCA--AA--------------------------TAAAA---T------AT-G--------G-AAA-T------GCA---ATTT--T---AAA----GAAGG-AGAAAC---GAGGATTAT-------T---------------TA---GATC------CGCCAT---TATA-C---------GACTACCCCACGGAAGCATTTCCTGTTT-CCAATGATGG-TACT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAAAACTCTGATCTATTTTACACACTTTTGACCAACACCAGCTGTGTTTATATCATTTCATGTCAGTATTATGCACGCTTTACGGCTTATACTGCGGTTACCATGCTAACGATTTAAAGATATTAA
Unaligned ( gi|28 ): TGTGTCTTATGACATGAAGAAGTTATTATTCAGTTATGAAGCAAATGTGATAAATTGTCATTGCATAACATTCTAAATCAGTTATA
Unaligned ( gi|31 ): TTTAAATTGTGTTAATTATACTACAATAAACATACGGTAATTTCGATAGTTTTGAACTGATCAG
Unaligned ( gi|33 ): TTTGCATTCATTGGCCCCGTATTGCCAAAAGGATACATATTTAA
Unaligned ( gi|34 ): ATTTAAGTTTTATCATCAAAAAGTTTATATA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 55 4444 2 2 22 2 22 333 5555 2 2 55555 2 2 33 2 22 2 99 2 2 2 4444 555555 1 88888 333 1 5 66 2 2 4 2 22 22 22 1 22 33 4 22 44 3333 1 333 555555 66666666 1 1 555555 333 22 333 3333 1 333 22222222222222222222222 333 555555 333 1 777777777 2 2
lowQualScore : .. .... . . .. . .. ... .... . . ..... . . .. . .. . .. . . . .... ...... . ..... ... . . .. . . . . .. .. .. . .. .. . .. .. .... . ... ...... ........ . . ...... ... .. ... .... . ... ....................... ... ...... ... . ......... . .
lowQualScore : 22 2222 1 1 99 1 99 777 0000 4 2 66666 4 2 11 2 77 2 00 1 6 0 2222 555555 9 11111 333 9 7 77 0 0 0 0 66 66 66 9 66 33 0 66 33 9999 8 000 000000 33333333 7 7 000000 000 44 000 7777 7 000 77777777777777777777777 000 000000 000 7 000000000 0 1
consensus : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
Reference ( family-1480 ) : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|1 : GTGTAACACTCACCGTCGATTTTTGTTCTTTGTTCTAT----AGTAAAAAATAAAA-GTT--TAA-AGACT--TGTC---ATTTATACAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGACAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAT-A---TTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCAAAATCAT------GTATTCCC-ACCC-----AA---AAAT-TCAAACATC-A--T-TTTT-T-TTCTTAA-TCCACGATTCGAAC--GCGACAATGCTTTAAAAATGTTC--CAAATACA--TCAATAA-TGCCATTTA--AAT-AAAACAA--A--T----GAGC-GTTCAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT---TAAGACCTAAAAACAGACTACCCCACGAAAGCACTTCCTTTTTCCCAATGGAGG-TACTAT
gi|10 : GTGTAAG-CCCACCATAGATATTTGTTCTTTTTTCTAT----AGTATGTAACAAAA-GTT--TGA-AGGCT--TGTC---TTTCACCGAG----AGACCAAAATAAAAGAG-GTGAAACTTA-CATT-----TTATTGTTTGTTAACCTCTGCACTACTAAA-TA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAACTG-AT-TTATT-TT-CTGTTCAGT-ATGT----GCGCTGTTGACAAAGTGAAAGTATACTGTCGAAATCAT------GTATTCAT-A---------------TT-CCAAACATC-AATTATTTT-T-TTCTTTA-TTCACAATTCAAAC--ATGAGTATGCTTTCAAAATGTTC--AAAATACA--TCAAAAA-TGCTTTTCA--AAT-AAAA-AA--AA-T----GAGC-ATTAAAT---T------TAG--------G-AAAA-T------GCA---TTTT-------------AAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAT------CGCT---------------------------CCACGGAAGCATTTTATTTTT-CCAAAGGTGG-TTCTATgct
gi|11 : gGTATAAC-CCCACCATTGATATTTCTGCTTTATTCTAT----AGTAAATAATACAA-GTT--TGA-AGGTT--TGTC---ATTCGTAGAG----AGACCCAAATGAAAGAA-GTGAAACTGA-CATT-----TTACTGTTCGTCAACCTCTGCACTATCAAAATA-TGATGAGGAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGT----A----------------------GACTTCCAAAATCAT------GTACTCAT-ACCC-----CA---ATTT-CCATACATC-A-GT-TTTT-TATTCTAAA-TTCACAATTCAAAT--ATGACAGTGCTTTCAAAATGTTC--AAAGTACTGTTCAATAA-CGCCATTTA--AAT-AAAAGAA--A--T----GAGC-ATTAAAA---T------AAG--------GGAAAA-G------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAAGATTAT-------A---------------TA---TAAC------TGCCAT---TATG-C---------GACTACCTC-----AGCACTTCCTTTTC-CCAATAGTGGTTACTATgcct
gi|12 : agGTATAAG-CTCACTATAAATTCGTTATCTTTACACTATTAATAATAAATAA-AGAA-ATA--TGC-ATGCT--TGTC---ATTCACAGAC----AGACTGAAATGAAAGAA-GTGCACCTTA-CATT-----GTATTGTTTGCCAACCTCTGCATTACCATG-TACTGATGAGGAGA-GTAGGGAG--TA-CGTTTCAT-CCAAGAG-ATGTTCTT-TTTCTGTTCAGT-GCGT----ACACTGTTGACAAAGCAAAAGTAGACATCAGAAAGCAT------GTATTCAT-GTCC-----CA---ATTT-CCAAGCATT-A-TT-TTT----------A-CTTACATTTCAAAC--ATGACAACGCTTTCA------T----AAATACA--TCAAATA-TACCATTCA--AGT-AAAA-AA--A--T----AAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---ATTT--T---GAA----TAAGA-AGAAAA---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TAT---------------------------GCATTTCTCGTTT-CCAATGGTGG-TGCTATg
gi|13 : TGTAAT-TCCACCGTTGATTTATGTTCTTTATTCTAT----AGTAAATAATAAAA-AAA--TGA-ACGCT--TGTC---ATTCATAGAG----AGAC--------------------------ATT-----TTACTGTTTGTCAACCTATGTACTACCAAAATA-TGAGGGGAAAT-GAAGGGGT--CA-T-TGTCAT-ATAAGAA----TTTTT-TTTCTGCTCAAT-GTGT----ACACTGTTGTCAAAGTGAAAGTAGACTTCCGGAAGCAT------GGATTCATTATTCATA--TA---ATTTTCCAAGCATC-A-AT-CTTT-T-TTTAAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--TAT--AAA-AA--A--T----GAGC-ATTAAAC---G------AAG--------T-AGAA-T------GCA---TTTT--T---AAA----GAAGA-AAAAA-----A-----AT-------C---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCATGAAAGCACGTCCTTTTT-ACAATGGTGG-TACTATg
gi|14 : GTGTTAG-CCCACCATTGATTTTTATTTTTTGTTCTGC----AGTAAA----AAAA-GTT--TAC-ATACT--TGTC---ATACAGAGAG----GTACC--AAT---------TG-----TATCATT-----TTATTGTATGTCAATCACTGCACTACCAAAATT-TGATGAGAAAA-ATAAGGGT--AA-TGTGTCAT-----GAG-AT-TTTTT-TT-CTATTCAAT-ATAT----ATACTGTTGACAAAGTGAAAGCAGACTTCCGTAATCCT----------TCAT-ACCC-----CA---ATTT-CCAAGCATC-A-GT-TTCTAT-TTCT-AA-TTAACAATTTAAAC--ATGACAGTGCTTTCAAAGTATTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAAA-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------TGTCAT---TATG-C---------GACTACCCCACAGAAGCAGTT
gi|15 : TA-CATT-----TTAC---------ACCT--GCAGGGC-AAAATT-TCATTAAAAAA-GTAGGGTT--TAATTTATCATCATT-GAG-TT-GTTTTGTTTGTATT---T-GTGCTTAAACACTGTTGATTAAGTGAAAGTACACTTTC-AAATAGT------GTATTCAT-ACCCACCCACACTCATTT-CCAGGCACA-A-TT-TCTT-T-TTCTAAA-TTCCCAATTCAAGCATATGACAATGCTTTCCGTTTGTTC--CAAACAGA--ATAATAAGTGCCATTTA--AAC-CACA-AATGA--TCACCGAGCTAGTAAAAGGTC------AAGTCTTTTAAG-AATA-T------GCA---TTTT--A---AGA----TAAGACAAAAATAAAGAGGACTACACGGTAGT---------------TA---TGGCCAAGGTCACCAT---TATG-T---------TACTt
gi|16 : ttacatgattgtgaTGTAAG-TCCATCATTGATTATTGTACTTTATTTTGT----AGTAAATAA-AAAA-GT-----ACATGCT--TGGC---ATTCATTGAA----TGACCCAAA-GAAAGGA-GTGAAACTTA-CATT-----TTATTGTTTGCCAACTTTTGAACTTCCAAAATC-TGATTAGAAAA-TCAGGGGT--CA-CTTAGCAT-CCAAGAT-A--TTTTG-TTTCTGTTCAGTGGGGT----GAAATGTCGAC-AAGTAAAAATAGACGCTAGAAATCAT------GTATTCAT-ACCA-----CA---ATTT-CCAAGCATC-A-
gi|16 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagaA-AGCATC---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------atgattatttataaccgccattatgcctgtatccaatggtaatgctttgcaa
gi|17 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagatgtaagtccatcattgattattgtactttattttgtagtaaataaaaaagtacatgcttggcattcattgaatgacccaaagaaaggagtgaaacttacattttattgtttgccaacttttgaacttccaaaatctgattagaaaatcaggggtcacttagcatccaagatattttgtttctgttcagtggggtgaaatgtcgacaagtaaaaatagacgctagaaatcatgtattcataccacaatttccGTGTAA------CCATTGATTTTTGTTCTTTGTTCTAT----AGTAAA----AAAACGTT--TTA-AGGCT--TTTC---ATTCATTGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TAAATGTTTGTCAACCTCTGCACTACTAAAATA-TGATGAGAAAA-GTAGCAGTTATA-TATGTC-T-TTAAAAG-A--TTTTT-TTTATGTTAAGT-GTGT----ACACTGTTGTCAAAGTGAAAGTAAACTTCTGAAATCAT------ATATTCAT-ACCC-----TG---ATTC-CCAAGCA----------TT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTT--AAAATATA--TCAGTAA--GCCCTCTATTAAT-AActgtatccaatggtaatgctttgcaa
gi|18 : gAAA-GTAGGGGT--CA-TGTTTCAT-CCAAAAT-AC-TGTTC-T--CTATTCAGT-GTGT----ACACTGTTGACAAGGTGAAAGTAGTCGTCGGAAATCATTTGCATGTATTCAT-ATCC-----CA---ATTT-CCAAGCATC-A-CT-TTTT-TCTTCTAAA-TTCATAATTCAAAC--ATGACAATATGTTCAAAATGTTC--AAAATA------GATAA-CGCCATTCA--AGT-CACA-AA--A--T----GAGC-ATTAAAA----------ATG--------G-ACAT-T------GCA---TTTT--T---AAT----TAAGA-AAAAAC---CATGATTA--------C---------------TG---TCAC------CGCCAT---------------------TACCCAACGGAAACATTTTCTGTTT-CCAATGTTGG-
gi|19 : GTATG-CCCACCATTGATTTGTGTTCTTTATTTCAA----AATAAATAA-ACAC-CTTCTTGC-GTGCA--TGTC---ATTTATTGAA----GGACCTAAATGAATGAT-ATGAATCTTT-CATT-----TTATTGTTTGTCAACCTgttgtgc
gi|19 : T-GTGT----ACACTGTTGACAAAGTGAAAGTAGACGTCAAAAA----------GTTGTCAT---CT-----TA---ATT-------CACC-A-TT-------------------------CAAAT--ACGACAATGCTTTCAAAATGTTC--AAAATACA--TCAACAA-TGCCATTCA--AAT----A-AA--A--T----AAAC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTAT--T---AAA----AAGGagcatataaaaaaaatctcttgtgtacactgttgacaaagtgaaagtagacgtcaaaaagttgtcatcttaattcaccattcaaatacgacaatgctttcaaaatgttcaaaatacatcaacaatgccattcaaataaaataaacattaaaataaggaaaatgcattattaaaaagg
gi|2 : gtatgcccaccattgatttgtgttctttatttcaaaataaataaacaccttcttgcgtgcatgtcatttattgaaggacctaaatgaatgatatgaatctttcattttattgtttgtcaacctagcatataaaaaaaatctctGTGTAAT-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TAA-AGGCT--TGTC---ATTCATAGAA----AATCCCAATTGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-GGATGAGAAAA-GTAGGGGT--CA-TTTGTCAT-ATTAGAG-A--TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----AA---ATTT-CCAAGCATCAA-AT-TTTT-T-TTCTAAA-TGCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AATAAAAA-AA--A--T----GAGC-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TATATTAAC------CGCCAT---CATC-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|20 : CCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-TCAAGTATC-A-TA-TTTT-T-T-CTAAA-TTCATATTTCAAAC--AAGACAATGCTTTCAAAAT---------------------AA-TACCATT------T-AAAA-AA--A--T----GAGC-ATTAAAA---TTTTTTAAAA--------T-AAGA-TTTTTTTGCA---TTTT--T---AAA----GAAGA-AGAAAA---AAGGATTAT-------T---------------TA---TACT------TGCCAT---TATG-C---------GACTACCCAACGGAAGCACTTCC-TTTT-CCAATGGTGG-TTCTGTg
gi|21 : TCACAATTCAAAG--ATGATTATGCTGTCAAAATGTTC--AAAATACA--TCAATAA-TGTAATTCA--AAT-AAAA-AA--AAAT----GAGC-ATTAAAA---T------GAG--------G-AAAA-T------GCA---TTTTAAT---AAA-----AAGA-AGAAAC---GAGGATTAT-------T---------------TA---CAAC------CGCCAT---TATG-C---------GACTTCCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTgc
gi|22 : TTTT-TTTCT-CTAA-----------AAATTGTAGACATAGTTAAATTAGACTT----AA--AT------GTAATCAT-ACTC-----TA---ATTT-CCA--CATC-A-TT-TATT-T----TAAAGTTCACAAAT-AAAC--ATGATTAT-TTTT---AATATTC--AAAAAATA--TAAATAA-T-CCA--CA--AA--ATAA-CA--A--T----------TTAAAA---T------AAG--------G-ACAA-T-------TATTCTTTT--T---AAA----AAAGA-Actgc
gi|24 : gg-AGAAAC---AAGGATTAT-------T---------------CA---TGGT------AGCCAT---TATG-A---------GACTAACCCACGGAAGCGCATCCTGTTT-CCAATTGTGG-acaa
gi|25 : aaatacattcgattcttaacaaaaaacaaatgttctaaagcattcattcAANN---N------NNN--------N-NNNA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---CAAC------CGCCATTTATATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|26 : --A--T----GAGC-AATAAAA---T------AAG--------G-AAAACT------GCA---TTTT--T---AAATAAAGCAGA-AGCAAC---AAGGATTAT-------T---------------TA---TAAC-----------T---T-------------------CCCCATGGAAGCACTTCCTTTTT-CCAATGGTGG-TTCTgc
gi|27 : --T----GAGC-ATTAAAA---T------AAG--------G-GAAA-T------GCA---TTTT--T---A-------AAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT-----------------------------GGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|29 : GTGTTAC-CTCACCATTGATTTTTGTTTTTTATTCTAT----AGTAAATACTAAAA-GTT--TGA-AGTCT--TGTCACAATTCAgc
gi|3 : ggGTGTAAC-CCCACCACTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AATCCCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTAGTCAACCTCTGCATTATCAATATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGA----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCAA-TT-GTTT-T-TTCTTAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTATa
gi|30 : TGTAAA-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCTCCTGTC---gcct
gi|32 : TGTTAG-CTCACCATAGATTTTT-TTTATTATTCTAT----AGTAAATAg
gi|4 : aaagaGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGTCTCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ATTT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|5 : GTGTAAC-CCCACCATTGATTTTTGTTCTTAATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAAAG----GGTCCCAAATGAAAAAAAGTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ACAAGAG-AT-TGTTT-T-TCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGACATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|6 : GTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATGATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----A-ATCCCAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TTATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTT--GCTCAGT-TTGT----ACACTGGTGACAAAGTGAAAGAAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAACTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTCAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------G---------------TA---TAAC------CGTCAT---CATG-C---------GACTTCCCCACAGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|7 : GTGTAAA-ACCACCACTGATTTTTGTTGTCTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGGA--TGTC---ATTCATAGAG----AATCCCAAATGACAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGACAAAA-GTAGGGGC--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGC----ACACTGTTGAAAAAGTGAAAGTAGAGTTCCGAAATCAT------GTATTCAT-ACCG-----CA---ATTT-CCAACCA---A-TT-TT-----TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGTCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGTCAT---TATG-C---------AACTATCCCACGGAAGCACTTCCTGTTT-CCAATGGTGG-TTCTAg
gi|8 : CCACCATTGATTTTTTGTGTGTATT-----------AAA-AATAG-----T--TAT-ATGTT--TGTC---ATTCATAGAG----AGACTCAAATGAAAGAA-GTGAAACTCA-CATTAACTTTTATTATTTGTCAGCATCTGCACTATCAAAA-A-TGATGAAAAAAAGTAGGGGC--CA-TGTGCCAT-CGAAGAGTGT-TTTTT-TTTCTGCTCAGT-GTCT----ACACTGTTGACAAAGTGAAAATCGACTTCCGTAATCAT------GTATTCAT-ACCC-----CG---ATTT-CAAAGCATCAA-TT-CTTG-T-TTATAAA-TTCACACTTAAAAC--ATAACAATGCTTTCACAATGTTC--AAAATACA--TCAATAA-TACCATTCA--AAT---AA-AA--A--T----GAAC-ATTAAAA---T------AA---------G-AAAA-T------GTA---TATT--CAAAAAA----GAAGA-AGAAAC---AATGATTATA------TATATATATATATATATA---TAAC------CGCTTT---TATG-T---------GATTATCCCACGGCAGCACTGCTTATTT-CCTAT
gi|9 : TGTAAG-CCCATCATTAATTATTGTACTATATTCTAT----AGTAGATAATAAAA-GTT--CGA-AGGCT--TGTA---AATCATAGAGAGAGAGACCCAAATGATAGAA-GTAAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAAGAGG--TA-TATGTCAT-ATAAGAG-A--TTATT-TTTCTGCTCAGT-GTGT----ACACTGCTGACAACGTGAAAGTAGACTTCTGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A--T-TTTT-T-TTCTAAA-TTCACTATTCAAAC--ATAACAATGCTTTCAAAATGTTTTAAAAAAACA--TCAATAA-TGTCATTCA--AA--------------------------TAAAA---T------ATG--------G--AAA-T------GCA---ATTT--T---AAA----GAAGG-AGAAAC---GAGGATTAT-------T---------------TA---GATC------CGCCAT---TATA-C---------GACTACCCCACGGAAGCATTTCCTGTTT-CCAATGATGG-TACT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAAAACTCTGATCTATTTTACACACTTTTGACCAACACCAGCTGTGTTTATATCATTTCATGTCAGTATTATGCACGCTTTACGGCTTATACTGCGGTTACCATGCTAACGATTTAAAGATATTAA
Unaligned ( gi|28 ): TGTGTCTTATGACATGAAGAAGTTATTATTCAGTTATGAAGCAAATGTGATAAATTGTCATTGCATAACATTCTAAATCAGTTATA
Unaligned ( gi|31 ): TTTAAATTGTGTTAATTATACTACAATAAACATACGGTAATTTCGATAGTTTTGAACTGATCAG
Unaligned ( gi|33 ): TTTGCATTCATTGGCCCCGTATTGCCAAAAGGATACATATTTAA
Unaligned ( gi|34 ): ATTTAAGTTTTATCATCAAAAAGTTTATATA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 55 4444 2 2 22 2 22 333 5555 2 2 55555 2 2 33 2 22 2 99 2 2 2 4444 555555 1 88888 333 1 5 66 2 2 4 2 22 22 22 1 22 33 4 22 44 3333 1 333 555555 66666666 1 1 555555 333 22 333 3333 1 333 22222222222222222222222 333 555555 333 1 777777777 2 2
lowQualScore : .. .... . . .. . .. ... .... . . ..... . . .. . .. . .. . . . .... ...... . ..... ... . . .. . . . . .. .. .. . .. .. . .. .. .... . ... ...... ........ . . ...... ... .. ... .... . ... ....................... ... ...... ... . ......... . .
lowQualScore : 22 2222 1 1 99 1 99 777 0000 4 2 66666 4 2 11 2 77 2 00 1 6 0 2222 555555 9 11111 333 9 7 77 0 0 0 0 66 66 66 9 66 33 0 66 33 9999 8 000 000000 33333333 7 7 000000 000 44 000 7777 7 000 77777777777777777777777 000 000000 000 7 000000000 0 1
consensus : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
Reference ( family-1480 ) : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|1 : GTGTAACACTCACCGTCGATTTTTGTTCTTTGTTCTAT----AGTAAAAAATAAAA-GTT--TAA-AGACT--TGTC---ATTTATACAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGACAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAT-A---TTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCAAAATCAT------GTATTCCC-ACCC-----AA---AAAT-TCAAACATC-A--T-TTTT-T-TTCTTAA-TCCACGATTCGAAC--GCGACAATGCTTTAAAAATGTTC--CAAATACA--TCAATAA-TGCCATTTA--AAT-AAAACAA--A--T----GAGC-GTTCAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT---TAAGACCTAAAAACAGACTACCCCACGAAAGCACTTCCTTTTTCCCAATGGAGG-TACTAT
gi|10 : GTGTAAG-CCCACCATAGATATTTGTTCTTTTTTCTAT----AGTATGTAACAAAA-GTT--TGA-AGGCT--TGTC---TTTCACCGAG----AGACCAAAATAAAAGAG-GTGAAACTTA-CATT-----TTATTGTTTGTTAACCTCTGCACTACTAAA-TA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAACTG-AT-TTATT-TT-CTGTTCAGT-ATGT----GCGCTGTTGACAAAGTGAAAGTATACTGTCGAAATCAT------GTATTCAT-A---------------TT-CCAAACATC-AATTATTTT-T-TTCTTTA-TTCACAATTCAAAC--ATGAGTATGCTTTCAAAATGTTC--AAAATACA--TCAAAAA-TGCTTTTCA--AAT-AAAA-AA--AA-T----GAGC-ATTAAAT---T------TAG--------G-AAAA-T------GCA---TTTT-------------AAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAT------CGCT---------------------------CCACGGAAGCATTTTATTTTT-CCAAAGGTGG-TTCTATgct
gi|11 : gGTATAAC-CCCACCATTGATATTTCTGCTTTATTCTAT----AGTAAATAATACAA-GTT--TGA-AGGTT--TGTC---ATTCGTAGAG----AGACCCAAATGAAAGAA-GTGAAACTGA-CATT-----TTACTGTTCGTCAACCTCTGCACTATCAAAATA-TGATGAGGAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGT----A----------------------GACTTCCAAAATCAT------GTACTCAT-ACCC-----CA---ATTT-CCATACATC-A-GT-TTTT-TATTCTAAA-TTCACAATTCAAAT--ATGACAGTGCTTTCAAAATGTTC--AAAGTACTGTTCAATAA-CGCCATTTA--AAT-AAAAGAA--A--T----GAGC-ATTAAAA---T------AAG--------GGAAAA-G------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAAGATTAT-------A---------------TA---TAAC------TGCCAT---TATG-C---------GACTACCTC-----AGCACTTCCTTTTC-CCAATAGTGGTTACTATgcct
gi|12 : agGTATAAG-CTCACTATAAATTCGTTATCTTTACACTATTAATAATAAATAA-AGAA-ATA--TGC-ATGCT--TGTC---ATTCACAGAC----AGACTGAAATGAAAGAA-GTGCACCTTA-CATT-----GTATTGTTTGCCAACCTCTGCATTACCATG-TACTGATGAGGAGA-GTAGGGAG--TA-CGTTTCAT-CCAAGAG-ATGTTCTT-TTTCTGTTCAGT-GCGT----ACACTGTTGACAAAGCAAAAGTAGACATCAGAAAGCAT------GTATTCAT-GTCC-----CA---ATTT-CCAAGCATT-A-TT-TTT----------A-CTTACATTTCAAAC--ATGACAACGCTTTCA------T----AAATACA--TCAAATA-TACCATTCA--AGT-AAAA-AA--A--T----AAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---ATTT--T---GAA----TAAGA-AGAAAA---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TAT---------------------------GCATTTCTCGTTT-CCAATGGTGG-TGCTATg
gi|13 : TGTAAT-TCCACCGTTGATTTATGTTCTTTATTCTAT----AGTAAATAATAAAA-AAA--TGA-ACGCT--TGTC---ATTCATAGAG----AGAC--------------------------ATT-----TTACTGTTTGTCAACCTATGTACTACCAAAATA-TGAGGGGAAAT-GAAGGGGT--CA-T-TGTCAT-ATAAGAA----TTTTT-TTTCTGCTCAAT-GTGT----ACACTGTTGTCAAAGTGAAAGTAGACTTCCGGAAGCAT------GGATTCATTATTCATA--TA---ATTTTCCAAGCATC-A-AT-CTTT-T-TTTAAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--TAT--AAA-AA--A--T----GAGC-ATTAAAC---G------AAG--------T-AGAA-T------GCA---TTTT--T---AAA----GAAGA-AAAAA-----A-----AT-------C---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCATGAAAGCACGTCCTTTTT-ACAATGGTGG-TACTATg
gi|14 : GTGTTAG-CCCACCATTGATTTTTATTTTTTGTTCTGC----AGTAAA----AAAA-GTT--TAC-ATACT--TGTC---ATACAGAGAG----GTACC--AAT---------TG-----TATCATT-----TTATTGTATGTCAATCACTGCACTACCAAAATT-TGATGAGAAAA-ATAAGGGT--AA-TGTGTCAT-----GAG-AT-TTTTT-TT-CTATTCAAT-ATAT----ATACTGTTGACAAAGTGAAAGCAGACTTCCGTAATCCT----------TCAT-ACCC-----CA---ATTT-CCAAGCATC-A-GT-TTCTAT-TTCT-AA-TTAACAATTTAAAC--ATGACAGTGCTTTCAAAGTATTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAAA-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------TGTCAT---TATG-C---------GACTACCCCACAGAAGCAGTT
gi|15 : TA-CATT-----TTAC---------ACCT--GCAGGGC-AAAATT-TCATTAAAAAA-GTAGGGTT--TAATTTATCATCATT-GAG-TT-GTTTTGTTTGTATT---T-GTGCTTAAACACTGTTGATTAAGTGAAAGTACACTTTC-AAATAGT------GTATTCAT-ACCCACCCACACTCATTT-CCAGGCACA-A-TT-TCTT-T-TTCTAAA-TTCCCAATTCAAGCATATGACAATGCTTTCCGTTTGTTC--CAAACAGA--ATAATAAGTGCCATTTA--AAC-CACA-AATGA--TCACCGAGCTAGTAAAAGGTC------AAGTCTTTTAAG-AATA-T------GCA---TTTT--A---AGA----TAAGACAAAAATAAAGAGGACTACACGGTAGT---------------TA---TGGCCAAGGTCACCAT---TATG-T---------TACTt
gi|16 : ttacatgattgtgaTGTAAG-TCCATCATTGATTATTGTACTTTATTTTGT----AGTAAATAA-AAAA-GT-----ACATGCT--TGGC---ATTCATTGAA----TGACCCAAA-GAAAGGA-GTGAAACTTA-CATT-----TTATTGTTTGCCAACTTTTGAACTTCCAAAATC-TGATTAGAAAA-TCAGGGGT--CA-CTTAGCAT-CCAAGAT-A--TTTTG-TTTCTGTTCAGTGGGGT----GAAATGTCGAC-AAGTAAAAATAGACGCTAGAAATCAT------GTATTCAT-ACCA-----CA---ATTT-CCAAGCATC-A-
gi|16 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagaA-AGCATC---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------atgattatttataaccgccattatgcctgtatccaatggtaatgctttgcaa
gi|17 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagatgtaagtccatcattgattattgtactttattttgtagtaaataaaaaagtacatgcttggcattcattgaatgacccaaagaaaggagtgaaacttacattttattgtttgccaacttttgaacttccaaaatctgattagaaaatcaggggtcacttagcatccaagatattttgtttctgttcagtggggtgaaatgtcgacaagtaaaaatagacgctagaaatcatgtattcataccacaatttccGTGTAA------CCATTGATTTTTGTTCTTTGTTCTAT----AGTAAA----AAAACGTT--TTA-AGGCT--TTTC---ATTCATTGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TAAATGTTTGTCAACCTCTGCACTACTAAAATA-TGATGAGAAAA-GTAGCAGTTATA-TATGTC-T-TTAAAAG-A--TTTTT-TTTATGTTAAGT-GTGT----ACACTGTTGTCAAAGTGAAAGTAAACTTCTGAAATCAT------ATATTCAT-ACCC-----TG---ATTC-CCAAGCA----------TT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTT--AAAATATA--TCAGTAA--GCCCTCTATTAAT-AActgtatccaatggtaatgctttgcaa
gi|18 : gAAA-GTAGGGGT--CA-TGTTTCAT-CCAAAAT-AC-TGTTC-T--CTATTCAGT-GTGT----ACACTGTTGACAAGGTGAAAGTAGTCGTCGGAAATCATTTGCATGTATTCAT-ATCC-----CA---ATTT-CCAAGCATC-A-CT-TTTT-TCTTCTAAA-TTCATAATTCAAAC--ATGACAATATGTTCAAAATGTTC--AAAATA------GATAA-CGCCATTCA--AGT-CACA-AA--A--T----GAGC-ATTAAAA----------ATG--------G-ACAT-T------GCA---TTTT--T---AAT----TAAGA-AAAAAC---CATGATTA--------C---------------TG---TCAC------CGCCAT---------------------TACCCAACGGAAACATTTTCTGTTT-CCAATGTTGG-
gi|19 : GTATG-CCCACCATTGATTTGTGTTCTTTATTTCAA----AATAAATAA-ACAC-CTTCTTGC-GTGCA--TGTC---ATTTATTGAA----GGACCTAAATGAATGAT-ATGAATCTTT-CATT-----TTATTGTTTGTCAACCTgttgtgc
gi|19 : T-GTGT----ACACTGTTGACAAAGTGAAAGTAGACGTCAAAAA----------GTTGTCAT---CT-----TA---ATT-------CACC-A-TT-------------------------CAAAT--ACGACAATGCTTTCAAAATGTTC--AAAATACA--TCAACAA-TGCCATTCA--AAT----A-AA--A--T----AAAC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTAT--T---AAA----AAGGagcatataaaaaaaatctcttgtgtacactgttgacaaagtgaaagtagacgtcaaaaagttgtcatcttaattcaccattcaaatacgacaatgctttcaaaatgttcaaaatacatcaacaatgccattcaaataaaataaacattaaaataaggaaaatgcattattaaaaagg
gi|2 : gtatgcccaccattgatttgtgttctttatttcaaaataaataaacaccttcttgcgtgcatgtcatttattgaaggacctaaatgaatgatatgaatctttcattttattgtttgtcaacctagcatataaaaaaaatctctGTGTAAT-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TAA-AGGCT--TGTC---ATTCATAGAA----AATCCCAATTGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-GGATGAGAAAA-GTAGGGGT--CA-TTTGTCAT-ATTAGAG-A--TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----AA---ATTT-CCAAGCATCAA-AT-TTTT-T-TTCTAAA-TGCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AATAAAAA-AA--A--T----GAGC-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TATATTAAC------CGCCAT---CATC-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|20 : CCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-TCAAGTATC-A-TA-TTTT-T-T-CTAAA-TTCATATTTCAAAC--AAGACAATGCTTTCAAAAT---------------------AA-TACCATT------T-AAAA-AA--A--T----GAGC-ATTAAAA---TTTTTTAAAA--------T-AAGA-TTTTTTTGCA---TTTT--T---AAA----GAAGA-AGAAAA---AAGGATTAT-------T---------------TA---TACT------TGCCAT---TATG-C---------GACTACCCAACGGAAGCACTTCC-TTTT-CCAATGGTGG-TTCTGTg
gi|21 : TCACAATTCAAAG--ATGATTATGCTGTCAAAATGTTC--AAAATACA--TCAATAA-TGTAATTCA--AAT-AAAA-AA--AAAT----GAGC-ATTAAAA---T------GAG--------G-AAAA-T------GCA---TTTTAAT---AAA-----AAGA-AGAAAC---GAGGATTAT-------T---------------TA---CAAC------CGCCAT---TATG-C---------GACTTCCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTgc
gi|22 : TTTT-TTTCT-CTAA-----------AAATTGTAGACATAGTTAAATTAGACTT----AA--AT------GTAATCAT-ACTC-----TA---ATTT-CCA--CATC-A-TT-TATT-T----TAAAGTTCACAAAT-AAAC--ATGATTAT-TTTT---AATATTC--AAAAAATA--TAAATAA-T-CCA--CA--AA--ATAA-CA--A--T----------TTAAAA---T------AAG--------G-ACAA-T-------TATTCTTTT--T---AAA----AAAGA-Actgc
gi|24 : gg-AGAAAC---AAGGATTAT-------T---------------CA---TGGT------AGCCAT---TATG-A---------GACTAACCCACGGAAGCGCATCCTGTTT-CCAATTGTGG-acaa
gi|25 : aaatacattcgattcttaacaaaaaacaaatgttctaaagcattcattcAANN---N------NNN--------N-NNNA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---CAAC------CGCCATTTATATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|26 : --A--T----GAGC-AATAAAA---T------AAG--------G-AAAACT------GCA---TTTT--T---AAATAAAGCAGA-AGCAAC---AAGGATTAT-------T---------------TA---TAAC-----------T---T-------------------CCCCATGGAAGCACTTCCTTTTT-CCAATGGTGG-TTCTgc
gi|27 : --T----GAGC-ATTAAAA---T------AAG--------G-GAAA-T------GCA---TTTT--T---A-------AAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT-----------------------------GGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|29 : GTGTTAC-CTCACCATTGATTTTTGTTTTTTATTCTAT----AGTAAATACTAAAA-GTT--TGA-AGTCT--TGTCACAATTCAgc
gi|3 : ggGTGTAAC-CCCACCACTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AATCCCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTAGTCAACCTCTGCATTATCAATATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGA----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCAA-TT-GTTT-T-TTCTTAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTATa
gi|30 : TGTAAA-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCTCCTGTC---gcct
gi|32 : TGTTAG-CTCACCATAGATTTTT-TTTATTATTCTAT----AGTAAATAg
gi|4 : aaagaGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGTCTCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ATTT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|5 : GTGTAAC-CCCACCATTGATTTTTGTTCTTAATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAAAG----GGTCCCAAATGAAAAAAAGTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ACAAGAG-AT-TGTTT-T-TCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGACATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|6 : GTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATGATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----A-ATCCCAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TTATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTT--GCTCAGT-TTGT----ACACTGGTGACAAAGTGAAAGAAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAACTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTCAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------G---------------TA---TAAC------CGTCAT---CATG-C---------GACTTCCCCACAGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|7 : GTGTAAA-ACCACCACTGATTTTTGTTGTCTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGGA--TGTC---ATTCATAGAG----AATCCCAAATGACAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGACAAAA-GTAGGGGC--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGC----ACACTGTTGAAAAAGTGAAAGTAGAGTTCCGAAATCAT------GTATTCAT-ACCG-----CA---ATTT-CCAACCA---A-TT-TT-----TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGTCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGTCAT---TATG-C---------AACTATCCCACGGAAGCACTTCCTGTTT-CCAATGGTGG-TTCTAg
gi|8 : CCACCATTGATTTTTTGTGTGTATT-----------AAA-AATAG-----T--TAT-ATGTT--TGTC---ATTCATAGAG----AGACTCAAATGAAAGAA-GTGAAACTCA-CATTAACTTTTATTATTTGTCAGCATCTGCACTATCAAAA-A-TGATGAAAAAAAGTAGGGGC--CA-TGTGCCAT-CGAAGAGTGT-TTTTT-TTTCTGCTCAGT-GTCT----ACACTGTTGACAAAGTGAAAATCGACTTCCGTAATCAT------GTATTCAT-ACCC-----CG---ATTT-CAAAGCATCAA-TT-CTTG-T-TTATAAA-TTCACACTTAAAAC--ATAACAATGCTTTCACAATGTTC--AAAATACA--TCAATAA-TACCATTCA--AAT---AA-AA--A--T----GAAC-ATTAAAA---T------AA---------G-AAAA-T------GTA---TATT--CAAAAAA----GAAGA-AGAAAC---AATGATTATA------TATATATATATATATATA---TAAC------CGCTTT---TATG-T---------GATTATCCCACGGCAGCACTGCTTATTT-CCTAT
gi|9 : TGTAAG-CCCATCATTAATTATTGTACTATATTCTAT----AGTAGATAATAAAA-GTT--CGA-AGGCT--TGTA---AATCATAGAGAGAGAGACCCAAATGATAGAA-GTAAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAAGAGG--TA-TATGTCAT-ATAAGAG-A--TTATT-TTTCTGCTCAGT-GTGT----ACACTGCTGACAACGTGAAAGTAGACTTCTGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A--T-TTTT-T-TTCTAAA-TTCACTATTCAAAC--ATAACAATGCTTTCAAAATGTTTTAAAAAAACA--TCAATAA-TGTCATTCA--AA--------------------------TAAAA---T------ATG--------G--AAA-T------GCA---ATTT--T---AAA----GAAGG-AGAAAC---GAGGATTAT-------T---------------TA---GATC------CGCCAT---TATA-C---------GACTACCCCACGGAAGCATTTCCTGTTT-CCAATGATGG-TACT
blockSeqs : G TAAT C C CT C CC ACA AGAG A T AACTT C A TA A CA T TG G T G TTAA TTGCAT T ACCCA CTC T A AT A A A G AT TA GT G TT AA G TG AA CACC T GGT TTTTTA TCTTTTAA G C TTTTTT TTC AA AAA TAAA C AAA ATATATATATATATATA TAT CAAGGT TTA . . . T
blockSeqs : C . T . . . . . . . . . . . . . A . T . T . . . . ATA . . A TT . . C . . . . . . A . . A . . . . . . . . . . . . . . ACGGTAGT . . . . . . .
blockSeqs : G . T . . . . . . . . . . . . . A . T . T . . . . . . . A G . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : T . T . . . . . . . . . . . . . C . T . T . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : G . T . . . . . . . . . . . . . A . T . T . . . . . . . . A . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : G . T . . . . . . . . . . . . . C . C . T . . . . . . . . G . . . . . . . . . C . . . . . . . . . . . . . . . . . C . . . . . . .
blockSeqs : G . T . . . . . . . . . . . . . T . T . T . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : T . T . . . . . . . . . . . . . C . T . T . . . . . . . . C . . . . . . . . . C . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : C . T . . . . . . . . . . . . . A . T . T . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . . . .
blockSeqs : C . T . . . . . . . . . . . . . A . T . T . . . . . . . . A . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : A . T . . . . . . . . . . . . . A . T . T . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : G . T . . . . . . . . . . . . . A . T . T . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : C . T . . . . . . . . . . . . . A . . . T . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . A . . . . . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . C . . . . . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . A . . . . . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : G . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . .
blockSeqs : .
blockSeqCons : N* T* T* *********
originalCons : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
finalCons : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-AT-T-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAAAACTCTGATCTATTTTACACACTTTTGACCAACACCAGCTGTGTTTATATCATTTCATGTCAGTATTATGCACGCTTTACGGCTTATACTGCGGTTACCATGCTAACGATTTAAAGATATTAA
Unaligned ( gi|28 ): TGTGTCTTATGACATGAAGAAGTTATTATTCAGTTATGAAGCAAATGTGATAAATTGTCATTGCATAACATTCTAAATCAGTTATA
Unaligned ( gi|31 ): TTTAAATTGTGTTAATTATACTACAATAAACATACGGTAATTTCGATAGTTTTGAACTGATCAG
Unaligned ( gi|33 ): TTTGCATTCATTGGCCCCGTATTGCCAAAAGGATACATATTTAA
Unaligned ( gi|34 ): ATTTAAGTTTTATCATCAAAAAGTTTATATA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 55 4444 2 2 22 2 22 333 5555 2 2 55555 2 2 33 2 22 2 99 2 2 2 4444 555555 1 88888 333 1 5 66 2 2 4 2 22 22 22 1 22 33 4 22 44 3333 1 333 555555 66666666 1 1 555555 333 22 333 3333 1 333 22222222222222222222222 333 555555 333 1 777777777 2 2
lowQualScore : .. .... . . .. . .. ... .... . . ..... . . .. . .. . .. . . . .... ...... . ..... ... . . .. . . . . .. .. .. . .. .. . .. .. .... . ... ...... ........ . . ...... ... .. ... .... . ... ....................... ... ...... ... . ......... . .
lowQualScore : 22 2222 1 1 99 1 99 777 0000 4 2 66666 4 2 11 2 77 2 00 1 6 0 2222 555555 9 11111 333 9 7 77 0 0 0 0 66 66 66 9 66 33 0 66 33 9999 8 000 000000 33333333 7 7 000000 000 44 000 7777 7 000 77777777777777777777777 000 000000 000 7 000000000 0 1
consensus : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
Reference ( family-1480 ) : GTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|1 : GTGTAACACTCACCGTCGATTTTTGTTCTTTGTTCTAT----AGTAAAAAATAAAA-GTT--TAA-AGACT--TGTC---ATTTATACAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGACAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAT-A---TTTT-TTTCTGCTCAGT-GTGT----ACACTGTTGACAAAGTGAAAGTAGACTTCCAAAATCAT------GTATTCCC-ACCC-----AA---AAAT-TCAAACATC-A--T-TTTT-T-TTCTTAA-TCCACGATTCGAAC--GCGACAATGCTTTAAAAATGTTC--CAAATACA--TCAATAA-TGCCATTTA--AAT-AAAACAA--A--T----GAGC-GTTCAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT---TAAGACCTAAAAACAGACTACCCCACGAAAGCACTTCCTTTTTCCCAATGGAGG-TACTAT
gi|10 : GTGTAAG-CCCACCATAGATATTTGTTCTTTTTTCTAT----AGTATGTAACAAAA-GTT--TGA-AGGCT--TGTC---TTTCACCGAG----AGACCAAAATAAAAGAG-GTGAAACTTA-CATT-----TTATTGTTTGTTAACCTCTGCACTACTAAA-TA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAACTG-AT-TTATT-TT-CTGTTCAGT-ATGT----GCGCTGTTGACAAAGTGAAAGTATACTGTCGAAATCAT------GTATTCAT-A---------------TT-CCAAACATC-AATTATTTT-T-TTCTTTA-TTCACAATTCAAAC--ATGAGTATGCTTTCAAAATGTTC--AAAATACA--TCAAAAA-TGCTTTTCA--AAT-AAAA-AA--AA-T----GAGC-ATTAAAT---T------TAG--------G-AAAA-T------GCA---TTTT-------------AAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAT------CGCT---------------------------CCACGGAAGCATTTTATTTTT-CCAAAGGTGG-TTCTATgct
gi|11 : gGTATAAC-CCCACCATTGATATTTCTGCTTTATTCTAT----AGTAAATAATACAA-GTT--TGA-AGGTT--TGTC---ATTCGTAGAG----AGACCCAAATGAAAGAA-GTGAAACTGA-CATT-----TTACTGTTCGTCAACCTCTGCACTATCAAAATA-TGATGAGGAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGT----A----------------------GACTTCCAAAATCAT------GTACTCAT-ACCC-----CA---ATTT-CCATACATC-A-GT-TTTT-TATTCTAAA-TTCACAATTCAAAT--ATGACAGTGCTTTCAAAATGTTC--AAAGTACTGTTCAATAA-CGCCATTTA--AAT-AAAAGAA--A--T----GAGC-ATTAAAA---T------AAG--------GGAAAA-G------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAAGATTAT-------A---------------TA---TAAC------TGCCAT---TATG-C---------GACTACCTC-----AGCACTTCCTTTTC-CCAATAGTGGTTACTATgcct
gi|12 : agGTATAAG-CTCACTATAAATTCGTTATCTTTACACTATTAATAATAAATAA-AGAA-ATA--TGC-ATGCT--TGTC---ATTCACAGAC----AGACTGAAATGAAAGAA-GTGCACCTTA-CATT-----GTATTGTTTGCCAACCTCTGCATTACCATG-TACTGATGAGGAGA-GTAGGGAG--TA-CGTTTCAT-CCAAGAG-ATGTTCTT-TTTCTGTTCAGT-GCGT----ACACTGTTGACAAAGCAAAAGTAGACATCAGAAAGCAT------GTATTCAT-GTCC-----CA---ATTT-CCAAGCATT-A-TT-TTT----------A-CTTACATTTCAAAC--ATGACAACGCTTTCA------T----AAATACA--TCAAATA-TACCATTCA--AGT-AAAA-AA--A--T----AAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---ATTT--T---GAA----TAAGA-AGAAAA---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TAT---------------------------GCATTTCTCGTTT-CCAATGGTGG-TGCTATg
gi|13 : TGTAAT-TCCACCGTTGATTTATGTTCTTTATTCTAT----AGTAAATAATAAAA-AAA--TGA-ACGCT--TGTC---ATTCATAGAG----AGAC--------------------------ATT-----TTACTGTTTGTCAACCTATGTACTACCAAAATA-TGAGGGGAAAT-GAAGGGGT--CA-T-TGTCAT-ATAAGAA----TTTTT-TTTCTGCTCAAT-GTGT----ACACTGTTGTCAAAGTGAAAGTAGACTTCCGGAAGCAT------GGATTCATTATTCATA--TA---ATTTTCCAAGCATC-A-AT-CTTT-T-TTTAAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--TAT--AAA-AA--A--T----GAGC-ATTAAAC---G------AAG--------T-AGAA-T------GCA---TTTT--T---AAA----GAAGA-AAAAA-----A-----AT-------C---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCATGAAAGCACGTCCTTTTT-ACAATGGTGG-TACTATg
gi|14 : GTGTTAG-CCCACCATTGATTTTTATTTTTTGTTCTGC----AGTAAA----AAAA-GTT--TAC-ATACT--TGTC---ATACAGAGAG----GTACC--AAT---------TG-----TATCATT-----TTATTGTATGTCAATCACTGCACTACCAAAATT-TGATGAGAAAA-ATAAGGGT--AA-TGTGTCAT-----GAG-AT-TTTTT-TT-CTATTCAAT-ATAT----ATACTGTTGACAAAGTGAAAGCAGACTTCCGTAATCCT----------TCAT-ACCC-----CA---ATTT-CCAAGCATC-A-GT-TTCTAT-TTCT-AA-TTAACAATTTAAAC--ATGACAGTGCTTTCAAAGTATTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAAA-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------TGTCAT---TATG-C---------GACTACCCCACAGAAGCAGTT
gi|15 : TA-CATT-----TTAC---------ACCT--GCAGGGC-AAAATT-TCATTAAAAAA-GTAGGGTT--TAATTTATCATCATT-GAG-TT-GTTTTGTTTGTATT---T-GTGCTTAAACACTGTTGATTAAGTGAAAGTACACTTTC-AAATAGT------GTATTCAT-ACCCACCCACACTCATTT-CCAGGCACA-A-TT-TCTT-T-TTCTAAA-TTCCCAATTCAAGCATATGACAATGCTTTCCGTTTGTTC--CAAACAGA--ATAATAAGTGCCATTTA--AAC-CACA-AATGA--TCACCGAGCTAGTAAAAGGTC------AAGTCTTTTAAG-AATA-T------GCA---TTTT--A---AGA----TAAGACAAAAATAAAGAGGACTACACGGTAGT---------------TA---TGGCCAAGGTCACCAT---TATG-T---------TACTt
gi|16 : ttacatgattgtgaTGTAAG-TCCATCATTGATTATTGTACTTTATTTTGT----AGTAAATAA-AAAA-GT-----ACATGCT--TGGC---ATTCATTGAA----TGACCCAAA-GAAAGGA-GTGAAACTTA-CATT-----TTATTGTTTGCCAACTTTTGAACTTCCAAAATC-TGATTAGAAAA-TCAGGGGT--CA-CTTAGCAT-CCAAGAT-A--TTTTG-TTTCTGTTCAGTGGGGT----GAAATGTCGAC-AAGTAAAAATAGACGCTAGAAATCAT------GTATTCAT-ACCA-----CA---ATTT-CCAAGCATC-A-
gi|16 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagaA-AGCATC---AATGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------atgattatttataaccgccattatgcctgtatccaatggtaatgctttgcaa
gi|17 : aaatagataagttcttgcaattgacaccatcttaatatcataagatcgtatagatgtaagtccatcattgattattgtactttattttgtagtaaataaaaaagtacatgcttggcattcattgaatgacccaaagaaaggagtgaaacttacattttattgtttgccaacttttgaacttccaaaatctgattagaaaatcaggggtcacttagcatccaagatattttgtttctgttcagtggggtgaaatgtcgacaagtaaaaatagacgctagaaatcatgtattcataccacaatttccGTGTAA------CCATTGATTTTTGTTCTTTGTTCTAT----AGTAAA----AAAACGTT--TTA-AGGCT--TTTC---ATTCATTGAG----AGACCCAAATGAAAGAA-GTGAAACTTA-CATT-----TAAATGTTTGTCAACCTCTGCACTACTAAAATA-TGATGAGAAAA-GTAGCAGTTATA-TATGTC-T-TTAAAAG-A--TTTTT-TTTATGTTAAGT-GTGT----ACACTGTTGTCAAAGTGAAAGTAAACTTCTGAAATCAT------ATATTCAT-ACCC-----TG---ATTC-CCAAGCA----------TT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTTTCAAAATGTTT--AAAATATA--TCAGTAA--GCCCTCTATTAAT-AActgtatccaatggtaatgctttgcaa
gi|18 : gAAA-GTAGGGGT--CA-TGTTTCAT-CCAAAAT-AC-TGTTC-T--CTATTCAGT-GTGT----ACACTGTTGACAAGGTGAAAGTAGTCGTCGGAAATCATTTGCATGTATTCAT-ATCC-----CA---ATTT-CCAAGCATC-A-CT-TTTT-TCTTCTAAA-TTCATAATTCAAAC--ATGACAATATGTTCAAAATGTTC--AAAATA------GATAA-CGCCATTCA--AGT-CACA-AA--A--T----GAGC-ATTAAAA----------ATG--------G-ACAT-T------GCA---TTTT--T---AAT----TAAGA-AAAAAC---CATGATTA--------C---------------TG---TCAC------CGCCAT---------------------TACCCAACGGAAACATTTTCTGTTT-CCAATGTTGG-
gi|19 : GTATG-CCCACCATTGATTTGTGTTCTTTATTTCAA----AATAAATAA-ACAC-CTTCTTGC-GTGCA--TGTC---ATTTATTGAA----GGACCTAAATGAATGAT-ATGAATCTTT-CATT-----TTATTGTTTGTCAACCTgttgtgc
gi|19 : T-GTGT----ACACTGTTGACAAAGTGAAAGTAGACGTCAAAAA----------GTTGTCAT---CT-----TA---ATT-------CACC-A-TT-------------------------CAAAT--ACGACAATGCTTTCAAAATGTTC--AAAATACA--TCAACAA-TGCCATTCA--AAT----A-AA--A--T----AAAC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTAT--T---AAA----AAGGagcatataaaaaaaatctcttgtgtacactgttgacaaagtgaaagtagacgtcaaaaagttgtcatcttaattcaccattcaaatacgacaatgctttcaaaatgttcaaaatacatcaacaatgccattcaaataaaataaacattaaaataaggaaaatgcattattaaaaagg
gi|2 : gtatgcccaccattgatttgtgttctttatttcaaaataaataaacaccttcttgcgtgcatgtcatttattgaaggacctaaatgaatgatatgaatctttcattttattgtttgtcaacctagcatataaaaaaaatctctGTGTAAT-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TAA-AGGCT--TGTC---ATTCATAGAA----AATCCCAATTGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-GGATGAGAAAA-GTAGGGGT--CA-TTTGTCAT-ATTAGAG-A--TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----AA---ATTT-CCAAGCATCAA-AT-TTTT-T-TTCTAAA-TGCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGCCATTCA--AATAAAAA-AA--A--T----GAGC-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TATATTAAC------CGCCAT---CATC-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|20 : CCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-TCAAGTATC-A-TA-TTTT-T-T-CTAAA-TTCATATTTCAAAC--AAGACAATGCTTTCAAAAT---------------------AA-TACCATT------T-AAAA-AA--A--T----GAGC-ATTAAAA---TTTTTTAAAA--------T-AAGA-TTTTTTTGCA---TTTT--T---AAA----GAAGA-AGAAAA---AAGGATTAT-------T---------------TA---TACT------TGCCAT---TATG-C---------GACTACCCAACGGAAGCACTTCC-TTTT-CCAATGGTGG-TTCTGTg
gi|21 : TCACAATTCAAAG--ATGATTATGCTGTCAAAATGTTC--AAAATACA--TCAATAA-TGTAATTCA--AAT-AAAA-AA--AAAT----GAGC-ATTAAAA---T------GAG--------G-AAAA-T------GCA---TTTTAAT---AAA-----AAGA-AGAAAC---GAGGATTAT-------T---------------TA---CAAC------CGCCAT---TATG-C---------GACTTCCCCACGGAAGCACTTCCTTTTT-CCAATGGTGG-TACTgc
gi|22 : TTTT-TTTCT-CTAA-----------AAATTGTAGACATAGTTAAATTAGACTT----AA--AT------GTAATCAT-ACTC-----TA---ATTT-CCA--CATC-A-TT-TATT-T----TAAAGTTCACAAAT-AAAC--ATGATTAT-TTTT---AATATTC--AAAAAATA--TAAATAA-T-CCA--CA--AA--ATAA-CA--A--T----------TTAAAA---T------AAG--------G-ACAA-T-------TATTCTTTT--T---AAA----AAAGA-Actgc
gi|24 : gg-AGAAAC---AAGGATTAT-------T---------------CA---TGGT------AGCCAT---TATG-A---------GACTAACCCACGGAAGCGCATCCTGTTT-CCAATTGTGG-acaa
gi|25 : aaatacattcgattcttaacaaaaaacaaatgttctaaagcattcattcAANN---N------NNN--------N-NNNA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---CAAC------CGCCATTTATATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|26 : --A--T----GAGC-AATAAAA---T------AAG--------G-AAAACT------GCA---TTTT--T---AAATAAAGCAGA-AGCAAC---AAGGATTAT-------T---------------TA---TAAC-----------T---T-------------------CCCCATGGAAGCACTTCCTTTTT-CCAATGGTGG-TTCTgc
gi|27 : --T----GAGC-ATTAAAA---T------AAG--------G-GAAA-T------GCA---TTTT--T---A-------AAGA-AGAAAC---AAGGATTAT-------T---------------TA---TAAC------CGCCAT-----------------------------GGAAGCACTTCCTTTTT-CCAATGGTGG-TACTAT
gi|29 : GTGTTAC-CTCACCATTGATTTTTGTTTTTTATTCTAT----AGTAAATACTAAAA-GTT--TGA-AGTCT--TGTCACAATTCAgc
gi|3 : ggGTGTAAC-CCCACCACTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AATCCCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTAGTCAACCTCTGCATTATCAATATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGA----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATCAA-TT-GTTT-T-TTCTTAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-TACTATa
gi|30 : TGTAAA-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCTCCTGTC---gcct
gi|32 : TGTTAG-CTCACCATAGATTTTT-TTTATTATTCTAT----AGTAAATAg
gi|4 : aaagaGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----AGTCTCAAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTTCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-ATTT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAGTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---CATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|5 : GTGTAAC-CCCACCATTGATTTTTGTTCTTAATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAAAG----GGTCCCAAATGAAAAAAAGTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ACAAGAG-AT-TGTTT-T-TCTGCTCAGT-GTGT----ACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCAT------GAATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGACATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAATT---GAGGATTAT-------T---------------TA---TAAC------CGCCAT---TATG-C---------GACTACCCCACGGAAGCACTTCCTTTTT-GCAATGGTGG-CACTAT
gi|6 : GTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTAT----AGTAAATGATAAAA-GTT--TGA-AGGCT--TGTC---ATTCATAGAG----A-ATCCCAATGAAAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TTATGAGAAAA-GTAGGGGT--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TTT--GCTCAGT-TTGT----ACACTGGTGACAAAGTGAAAGAAGACTTCCGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A-TT-TTTT-T-TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAACTGTTC--AAAATACA--TCAATAA-TGCCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTCAAA---T------AAG--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAT---GAGGATTAT-------G---------------TA---TAAC------CGTCAT---CATG-C---------GACTTCCCCACAGAAGCACTTCCTTTTT-GCAATGGTGG-TACTAT
gi|7 : GTGTAAA-ACCACCACTGATTTTTGTTGTCTATTCTAT----AGTAAATAATAAAA-GTT--TGA-AGGGA--TGTC---ATTCATAGAG----AATCCCAAATGACAGAA-GTGAAACCTA-CATT-----TTACTGTTTGTCAACCTCTGCACTATCAAAATA-TGATGACAAAA-GTAGGGGC--CA-TGTGTCAT-ATAAGAG-AT-TTTTT-TT-CTGCTCAGT-GTGC----ACACTGTTGAAAAAGTGAAAGTAGAGTTCCGAAATCAT------GTATTCAT-ACCG-----CA---ATTT-CCAACCA---A-TT-TT-----TTCTAAA-TTCACAATTCAAAC--ATGACAATGCTATCAAAATGTTC--AAAATACA--TCAATAA-TGTCATTCA--AAT-AAAA-AA--A--T----GAGC-ATTAAAA---T------AAA--------G-AAAA-T------GCA---TTTT--T---AAA----GAAGA-AGAAAC---GAGGATTAT-------T---------------TA---TAAC------CGTCAT---TATG-C---------AACTATCCCACGGAAGCACTTCCTGTTT-CCAATGGTGG-TTCTAg
gi|8 : CCACCATTGATTTTTTGTGTGTATT-----------AAA-AATAG-----T--TAT-ATGTT--TGTC---ATTCATAGAG----AGACTCAAATGAAAGAA-GTGAAACTCA-CATTAACTTTTATTATTTGTCAGCATCTGCACTATCAAAA-A-TGATGAAAAAAAGTAGGGGC--CA-TGTGCCAT-CGAAGAGTGT-TTTTT-TTTCTGCTCAGT-GTCT----ACACTGTTGACAAAGTGAAAATCGACTTCCGTAATCAT------GTATTCAT-ACCC-----CG---ATTT-CAAAGCATCAA-TT-CTTG-T-TTATAAA-TTCACACTTAAAAC--ATAACAATGCTTTCACAATGTTC--AAAATACA--TCAATAA-TACCATTCA--AAT---AA-AA--A--T----GAAC-ATTAAAA---T------AA---------G-AAAA-T------GTA---TATT--CAAAAAA----GAAGA-AGAAAC---AATGATTATA------TATATATATATATATATA---TAAC------CGCTTT---TATG-T---------GATTATCCCACGGCAGCACTGCTTATTT-CCTAT
gi|9 : TGTAAG-CCCATCATTAATTATTGTACTATATTCTAT----AGTAGATAATAAAA-GTT--CGA-AGGCT--TGTA---AATCATAGAGAGAGAGACCCAAATGATAGAA-GTAAAACTTA-CATT-----TTACTGTTTGTCAACCTCTGCACTACCAAAATA-TGATGAGAAAA-GTAAGAGG--TA-TATGTCAT-ATAAGAG-A--TTATT-TTTCTGCTCAGT-GTGT----ACACTGCTGACAACGTGAAAGTAGACTTCTGAAATCAT------GTATTCAT-ACCC-----CA---ATTT-CCAAGCATC-A--T-TTTT-T-TTCTAAA-TTCACTATTCAAAC--ATAACAATGCTTTCAAAATGTTTTAAAAAAACA--TCAATAA-TGTCATTCA--AA--------------------------TAAAA---T------ATG--------G--AAA-T------GCA---ATTT--T---AAA----GAAGG-AGAAAC---GAGGATTAT-------T---------------TA---GATC------CGCCAT---TATA-C---------GACTACCCCACGGAAGCATTTCCTGTTT-CCAATGATGG-TACT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAAAACTCTGATCTATTTTACACACTTTTGACCAACACCAGCTGTGTTTATATCATTTCATGTCAGTATTATGCACGCTTTACGGCTTATACTGCGGTTACCATGCTAACGATTTAAAGATATTAA
Unaligned ( gi|28 ): TGTGTCTTATGACATGAAGAAGTTATTATTCAGTTATGAAGCAAATGTGATAAATTGTCATTGCATAACATTCTAAATCAGTTATA
Unaligned ( gi|31 ): TTTAAATTGTGTTAATTATACTACAATAAACATACGGTAATTTCGATAGTTTTGAACTGATCAG
Unaligned ( gi|33 ): TTTGCATTCATTGGCCCCGTATTGCCAAAAGGATACATATTTAA
Unaligned ( gi|34 ): ATTTAAGTTTTATCATCAAAAAGTTTATATA