lowQualScore : 11111
lowQualScore : 33 22 00000 4 4 11111111 1 11111111111 1 222222222 1111111 22222222222222222222222222222222222222222222222222222222222222222222 22222 11111111 1111111111111
lowQualScore : 44 6 11 00000 0 0 3 77777777 555 3 2 66666 7 4 66666 44 1 33 8 00000000000 444 0 55555 1 2 1 3 1 99999999 22 5 3 22 4444 999999999 44444 333 44 66666666666666666 444444 2 77777777 9999999 2 2 44 0 0 9999999999 4444 9 0 55555555555555555555555555555555555555555555555555555555555555555555 444 2 22222 1 33333333 7 8888888888888
lowQualScore : .. . .. ..... . . . ........ ... . . ..... . . ..... .. . .. . ........... ... . ..... . . . . . ........ .. . . .. .... ......... ..... ... .. ................. ...... . ........ ....... . . .. . . .......... .... . . .................................................................... ... . ..... . ........ . .............
lowQualScore : 00 0 00 00000 0 0 0 11111111 444 1 9 77777 0 4 22222 22 1 44 2 77777777777 444 0 99999 4 0 7 0 6 44444444 44 0 1 44 8888 777777777 00000 222 88 99999999999999999 888888 5 66666666 0000000 2 1 55 2 3 2222222222 4444 8 2 66666666666666666666666666666666666666666666666666666666666666666666 111 7 00000 3 11111111 1 0000000000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTTCTAGAACTACTATCGATAATT-GATATGTAATANT--G-----TACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATT-AAGTNAAG--TCGAAAC--------AA-C---GAAACTA-----CGATGGTGA-A-AAGTCGAAACAA-----CGA--AACNACGATGGTG--AAA----AGT---CG-A--AA-----CTA---CGATGGT-GAAAAGT--------C--------GAA------ACTAC--------GA------TGGT-GA-A--AAGTCGAAAC----------AA---CGAAACNACGATG----------G--T---GA-----AAAGTC-G--------------AAA--T-----CG-------T---TTCGAC-TTTTCACCAT---CGTAGTTTCG-------ACTNTTC---A-------CCATCGTAGTTTC
Reference ( gi|2 ) : AACCTTATTATTAAGAGAAAAAAAGTTGTAGCAGTTACATTATAAACTTTTTCGTAACTAAACTTACT-----TAATTTGATATG-AATAAT--G-----TACGGTGTCCCG---TT-G-GGG-----CAATCGTGGCATA-----TTTATTAAATT-AAGTTAAG--TCAAAAC--------AA-C---GAAACAA-----CGATGGTGA-A-AAGTCGAAATAA-----CGA--AACAACGATGGTG--AAA----AGT---TA-C--AA-----CTA---CGATGGC-GAAAAGT--------C--------GAA------ACTAC--------GA------GGGT-GA-A--AAGTCGAAAC----------AA---CGAAACAACGACG----------G--T---GA-----AAAGTC-G--------------AAA--T-----CA-------T---TTCGAC-TTTTCACCAT---AATAGTTTCG-------ACTGTTT---A-------CAATCGTAGTTTC
gi|6 : TCGTTTCTAGAACTACTATCGATAATT-GATATGTAATACTCCGACTTCTACGGTGTCCCG---TTCA-AGG-----CCATCGCGGCATA-----ATTATTTAATT-AATTAAAG--TCGAAACTACGAATCAA-C---GAAACTA-----CAATAGTGA-A-AAGT-G------------GA--AACAACGATGGTG--AAA----AG
gi|16 : tgatgaaacgatggcatgaaaatatttcggAT--C-----TACGGTGTCCAG---TG-G-GGG-----CCATCGCGGCATA-----Ttttcttttttctgggaatgacttg
gi|3 : T--G-----TACGGTATCCCG---TT-G-GGGGTGGTCAATCGCGGCAAA-----TTTATTATTTT-AAGAAAAG--TCAAAAC--------AA-C---GAAACTA-----CGATGGTGA-A-AAGTCG-AACAA-----CGA--AACAACGATGGTGAAAAA----AGT---C------A-----CTA---CGATAAT-GAAAAGT--------A--------GAA------ACAAC--------aac
gi|9 : atgttaatttgttgttat--G-----TACGGTATCCCG---TC-T-GGT-----TCATCGCGACATA-----TTTAT-AAATC-AAGTGAAG--TCCAAAC--------AA-C---GAAACTA-----CGACGATAA-A-AA---GAAGTAAAAAGTCGA--AACaaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|7 : --G-----TATGGTGTCCC----TT-GTGAG-----CCATCCCCGCAAA-----TTTA---AATG-ACGATA-G--T--GAAC--------AGTC---GA--CAA-----CGATAGTGA-A-AAGTCGCAATTA-----TT-------TCAATAGTG--AAA----AGT---CG-A--AA-----TTA---taacctgattttaactaaaaaattcaaatactaggttttacctgattatgacctcaaaactaaattgaataaagaata
gi|5 : gtcgacactattatggtaaaaggtcaaaacaacgatggtaaaatgttaaaaa-----TAAGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATT-AAGTCAAG--TCAAAAC--------AA-C---AAAACTA-----CAATGGTGA-A-AAGTCG-AATGT-----CGA--ATTAA-GATGGTG--AAA----AGT---CG-A--AA-----CTA---CGATGGT-G-AAAGT--------C--------GAA------ACTAC--------GA------TGGT-GA-A--AAATCtaaagatatatatggatgatttt
gi|12 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaa-----TACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATTAAAGT--AG--TCGAAAC--------AA-C---GAAACTA-----CGATAGTGA-A-AAGTCGAAAatagtttcgttgatt
gi|15 : g-----TACAGTGTCTAG---TT-A-GGG-----CAATTGTGGCATA-----TTTATTCAAataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|11 : -----TACGCTGTCCTG---TT-G-GGT-----TA-TCAAGACATACTAATTTTATTAAACA-TAG--AAACTTCGAGAC--------AA-CTTAAAAACAAAACTTCGATGGTGA-A-AATTAAAAAT
gi|4 : aaatatgttgtagatctagtctctaagtACGGTGTCCCGCCGTT-G-GGA-----CAATCACAGCATA-----TCT------TT-AAATTTAG--TC--------------------------------------------AAGTCGAAAAAA-----CGA--AACAAC----------------------TA----AA-----CTA---CGATGAT-GAAAAGT--------C--------GAA------ACAAT--------GA------TGTT-GA-A--AAGTCGA--------------------AAATAAT-----------------T--------------TC-G--------------A----------CG-------T---TTCGAC-TTTTCA-CAT---CGAAGTTTCG--------TTGTTTTG-ACCTATGTCAATCGTGGTTTCtatagcagtatattcatgg
gi|1 : agaagaaataatccgatgcatgtggacCAGTGTCCTG---TT-G-GGG-----TCATCAGGGCATA-----TTAATTATTTT-AAGTTAAG--TTGAAAC--------AA-T---GAAACTA-----CGGTAGTGA-A-AATTCG---TAA-----CT-------ATGATGGTG--AAATCATAGT---TT-C--AA-----CTgttgtttcgactttactttatttaataaatacgccgcgatggccccaacgagacacc
gi|4 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacacGGTGTCTCG---TT-G-GGG-----CCATCGCGGCGTA-----TTTATTAAATA-AAGTAAAG--TCGAAAC--------AA-C---GAAACCA-----CGAT--TGACATAGGTCAAAACAA-----CGA--AACTTCGAT-GTG--AAA----AGT----------------------------C-GAAACGT--------C--------GAA------ATTAtttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : agaagaaataatccgatgcatgtggacacggtgtcccgccgttgggacaatcacagcatatctttaaatttagtcaagtcgaaaaaacgaaacaactaaactacgatgatgaaaagtcgaaacaatgatgttgaaaagtcgaaaaGTGTCCTG---GT-A-GGG-----CCATCGCGGCATA-----TTTATTAAA--------GGA--TGAAAAT---------T-C---GAAACAA-----CAATGGTGA-A-AAGTTGAAACTA-----CGATGGGGAAAAGTGGTG--AAA----AGT---TG-A--AA-----CTA---CGATGGT-GAAATGT------------------------------------------------GGT-GA-A--AAGTTGAAAC----------TA---TGATTTCACCA------------------------------TC------------------A--T-----AG-------T---TACGAA-TTTTCACTAC---CGTAGTTTC--------ATTGTTT-----------CA
gi|14 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaag-GGG-----CCATCGTGTTATG-----TCTGTTATTTC-AAGTAAAG--TCGAAAC--------AA-C---GGAACTA-----CGATCGTGA-A-TAGTCGAATGAA-----CGaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|13 : -----CAACAGCGGCATT-----TTTA----ATT-GAGTCCAG--TC--------------------GAAACTA-----CGATGATGA-A-AAGCGGAAACAA-----CAA--AACTACAATCATG--AAA----AGT---TG-A--AA-----C
gi|8 : gacacgggtctagctctcctATTGTGGCATA-----TTTATTAAATC-AAGTAAAG------------------A-C---GAAACAA-----TGATGACGA-A-AAGT-------------CGA--AACAACGATGGTA--AAA----Aaa
gi|10 : aacatgaaactacgatggtgaaaacatgcaactacaatggtgaaaagtcgaaacagcaaaattttgaatgtgaaagtcgaaactatgatggtgaattatttcgactAAG--TCGAAAC--------GA-C---GAAACTA-----CGATTGTGA-A-AA----AAA-AA-----CGG--AACTAATATGTTG--AAA----AGTCGACA-C--AAAGAAGCAA---CGATGTT-GGAACAT--------C--------GAA------ACGTC--------AA------TGGT-GA-A--AAGTAGAAA
gi|8 : aataaattttcaataaatacaaaatcaG--TGAAAAC--------A--T---GCAACTA-----CAATGGTGA-A-AAGTCGAAACAG-----CAA--AATTTTGAATGTG---AA----AGT---CG-A--AA-----CTA---TGATGGT-GAAttcaacagt
gi|7 : aacatgaaactacgatgAAATGA-----CGATAGTGA-A-CAGTCGA-----------------CAACGATAGTG--AAA----AGT---CG-C--AA-----TTATTTCAATAGT-GAAAAGT--------C--------GAA------ATTAttatttcgacttttttaccatcgttgtttcgacttttcgtcatcattgtttcgtctttacttgatttaataaatatgccacaat
gi|10 : gtcgacactattatggtaaaaggtcaaaacaacgatggtaaaatgttaaaaaTGTTGA-A-AAGTCGAAACGA-----CGA--AACTACGATTGTG--AAA----AAA---AAACGGAA-----CTA---ATATGTT-GAAAAGT--------C--------GAC------ACAAA--------GA------AGC---A-ACGATGTTGGAAC----------AT---CGAAACGTCAATG----------G--T---GA-----AAAGTA-G--------------AAA--T-----GA-------T---TTTGaaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|6 : aataaattttcaataaata-A-AAGTCGAAACTA-----CGA--ATCAACGA--------------------------AA-----CTA---CAATAGT-GAAAAGT--------G--------GAA------ACAAC--------GA------TGGT-GA-A--AAGCCGAAAT----------Agt
gi|14 : tgatgaaacgatggcatgaaaa-A-AAGTCGAAACAA-----CGG--AACTACGATCGTG--AAT----AGT---aattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|12 : cgttcattcg-AAATTAAAGTAGT----CGA--AACAACGA--------------------------AA-----CTA---CGATAGT-GAAAAGT--------C--------GAA------ACacttgaaataacagacataacacgatggccc
gi|1 : -AAGTTGAAACAA-----TGA--AACTACGGTAGTG--AAA----ATT---CG-T--AA-----CTA---TGATGGT-GAAAaataaatatgccgcgatggccccaacgggacaccgtaataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|8 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagtt-AAGT--AAA-GA-----CGA--AACAATGATGACG--AAA----AGT---CG-A--AA-----CAA---CGATGGTAAAAAAGT--------C--------GAA------Atcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|12 : aacatgaaactacgatggtgaaaacatgcaactacaatggtgaaaagtcgaaacagcaaaattttgaatgtgaaagtcgaaactatgatggtgaattaAA-----CGA--AACTACGATAGTG--AAA----AGT---CG-A--AA-----Cgatttaataaatatgccacaat
gi|8 : A-----TGA--AACTACGATGGTG--AAA----ACA---TG-C--AA-----CTA---CAATGGT-GAAAAGT--------C--------GAA------ACAGCAAAATTTTGA------ATGT-G--A--AAGT---------------------CGAAACTATGATG----------G--T---G-----------------------------AA--T-----TA-------T---TTCGACTTTTTTACCAT---CGTTGTTTCG-------ACTTTTC---G-------TCATCATTGTTTCgtttcgactactttaatttaataaatatgccgcgatggccccaacgggacaccgtaataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|7 : aac-----CGA--CACTATTATGGTA--AAA----GGT---CA-A--AA-----CAA---CGATGGT-AAAATGT--------T--------AAA------AATAgtctttacttgatttaataaatatgccacaat
gi|1 : gtTG--AAAC---AAT---GA----AA-----CTA---CGGTAGT-GAAAATT--------C--------GTA------ACTAT--------GA------TGGT-GA-A--Aatttcgacttttcactattgaaataattgcgacttttcactatcgttgtcgactgttcactatcgtcatttaaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|6 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagtAA----AGT---CG-A--AA-----CTA---CGA-ATC-AA-------------C--------GAA------ACTAC--------AA------TAGT-GA-A--AAGT-G--------------------GAAACAACGATG----------G--T---GA-----AAAGCC-G--------------AAA--T------A-------T---TTtcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|7 : tgatgaaacgatggcatgaAA----ATT---TA----AA-----TGA---CGATAGT-GAACAGT--------C--------GAC------A--AC--------GA------TAGT-GA-A--AAGTCG---C----------AA---TTATTT--CAATA----------G--T---GA-----AAAGTC-G--------------AAA--T-----TAT------T---TTTAAC-ATTTTACCAT---CGTTGTTTTG-------ACCTTTT---A-------CCATAATAGTGTCaattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|13 : gtc----AGT---CG-A--AA-----CTA---CGATGAT-GAAAAGCGGAAACAAC--------AAA------ACTAC--------AA------TCAT-GA-A--AAGTTGAAAC----------AA---gcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|5 : gacacgggtctagctctcctcaacagcggcatttttaattgagtcc--AA-----CTA---CAATGGT-GAAAAGT--------C--------GAATGTCGAATTAA--------GA------TGGT-GA-A--AAGTCGAAACTACGATGGTGAAAGTCGAAACTACGATG----------G--T---GA-----AAAATC------------------A--T-----AG-------T---TTCG
gi|8 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaataaggtgtcccgttggggccatcgcggcatatttattaaattaagtcaagtcaaaacaacaa--AA-----CAA---TGATGAC-GAAAAGT--------C--------GAA------ACAAC--------GA------TGGTAAA-A--AAGTCGAAAT----------AA---TTCACCATC-ATA----------G--TTTCGACTTTCACATTC-A--------------AAA--TTTTGCTG-------T---TTCGAC-TTTTCACCAT---TGTAGTTGCA---------TGTTTTC-A-------CCATCGTAGTTTCttgatt
gi|12 : aacatC-GAAACAA--------C--------GAA------ACTAC--------GA------TAGT-GA-A--AAGTCGAAAC----------tcgtctttacttgatttaataaatatgccacaat
gi|3 : -GAAAAGT--------CAAAACAACGAA------ACTAC--------GA------TGGT-GA-A--AAGTCG-AAC----------AA---CGAAACAACGATG----------G--T---GA-----AAA-------------------AAG--T-----CA-------C---TACGAactactttaatttaataaatatgccgcgatggccccaacgggacaccgtaataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|4 : atgttaatttgttgttatgttgtttctacttttcattaAAAGT--------C--------GAA------ACAAC--------GAAACCACGATT-GACAT-AGGTCAAAAC----------AA---CGAAACTTCGAT-----------G--T---GA-----AAAGTC-G--------------AAACGT-----CGAAATTATT---TTCGAC-TTTTCAACAT---CATTGTTTCG-------ACTTTTC---A-------TCATCGTAGTTTttaaaataataaatttgccgcgattgaccacccccaacgggataccgtacaaaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|13 : agaagaaataatccgatgcatgtggacacggtgtcccgccgttgggacaatcacagcatatctttaaatttagtcaagtcgaaaaaacgaaacaactAGT--------C--------GAA------ACTAC--------GA------TGAT-GA-A--AAGCGGAAAC----------AA---CAAAACTACAATC----------A--T---GA-----AAAGTT-G--------------AAA--actttatttaataaatacgccgcgatggccccaacgagacacc
gi|7 : gacacgggtctagctctcctcaacagcggcatttttaattgagtccGT--------C--------GAC------ACTAT--------TA------TGGT-AA-A--AGGTCAAAAC----------AA-----------CGATG----------G--T---AA-----AATGTTAA--------------AAA--T-----AA-------T---TTCGAC-TTTTCACTATTGAAATAATTGCG-------ACTTTTC---A-------CTATCGTTGTcaa
gi|14 : -A--AAGTCGAAAC----------AA---CGGAACTACGATC----------G--T---GA-----ATAGTC-G--------------AAcgactgttcactatcgtcatttaaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|1 : cgttca--AAGTTGAAAC----------AA---TGAAACTACGGTA----------G--T---GA-----AAATTC-GTAACTATGATGGTGAAA--T-----CA-------TAGTTTCAAC-TTTTCACCAC---A----TTTC------------------A-------CCATCGTAGTTTCacttgaaataacagacataacacgatggccc
gi|9 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagtt--AAGTCCAAAC----------AA---CGAAACTACGACGATAAAAAGAAG--T---AA-----AAAGTC-G--------------AAA--aacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|12 : gAGTCGAAAC----------AA---CGAAACTACGATA----------G--T---GA-----AAAGTC-G--------------AAA--cacttgatttataaatatgtcgcgatgaaccagacgggataccgtactaacctgattttaactaaaaaattcaaatactaggttttacctgattatgacctcaaaactaaattgaataaagaata
gi|6 : gAACGATG----------GCAT---GA-----AAA------------------------------TA-------T---TTCGGC-TTTTCACCAT---CGTTGTTTCC-------ACTTTTC---A-------CTATTGTAGTTTCactttaatttaataaatatgccgcgatggccccaacgggacaccgtaataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|5 : tgatgaC-G--------------AAA--C-----TA-------T------GAT-TTTTCACCAT---CGTAGTTTCG-------ACT-TTC---A-------CCATCGTAGTTTCgttgattcgtagtttcgactttaattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|12 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaataaggtgtcccgttggggccatcgcggcatatttattaaattaagtcaagtcaaaacaacaaaactacaatggtgaaaagtcgaatgtcgaattaagatggtgaaaagtc-------T---TTCGAC-TTTTCACTAT---CGTAGTTTCG--------TTGTTT---ttgatt
gi|13 : g-------T---TTCCGC-TTTTCATCAT---CGTAGTTTCG-------ACTGcgactactttaatttaataaatatgccgcgatggccccaacgggacaccgtaataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|3 : gacacgggtctagctctcctcaacagcggcatttttaattgagtc---TTCGAC-TTTTCACCAT---CGTAGTTTCG--------TTGTTT---caacaaaactacaatcatgaaaagttgaaacaa
gi|10 : atgttaatttgttgttatgttgtttctacttttcattatcgtagtgacttttttcaccatcgttgtttcgttgTCGAC-TTTTCAACAT---ATTAGTTCCG-------TTTTTTTTTCA-------CAATCGTAGTTTCtgacttttcttaaaataataaatttgccgcgattgaccacccccaacgggataccgtacaaaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|3 : aataaattttcaataaatacaaaatcatttctacttttcaccattgacgtttcgatgttccaacatcgttgcttctttgtg-TTTTCACCAT---CGTTGTTTCGTTGTTCGACTTTTC---A-------CCATCGTAGTTTCgtcgtttcgacttttcaacagt
gi|12 : atgttaatttgttgttatgttgtttctacttttcattatcgtagtgacttGTTTCG-------ACTTTTC---A-------CTATCGTAGTTTCgttgttttgacttttcttaaaataataaatttgccgcgattgaccacccccaacgggataccgtacaaaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|14 : TTCG-------ACTATTC---A-------CGATCGTAGTTCCgttgtttcgactactttaatttaataaatatgccgcgatggccccaacgggacaccgtaataatgagcagcagcaacatgccgatacactaatttgaaaacttg
Alignments
lowQualScore : 22222 1 22222222 222222222222222222222222222222222 1111111111 2222222222 333333333333333333 111
lowQualScore : 88 3 66666 3 7 7 1 00000000 444 2 2 55555 55555 33 55 444444444444444444444444444444444 99999999 0000000000 2 0 5 1 3 44 3 3 7777 2 0 77777 2 7777777777 5 444444444444444444 66 3 1 1 3 555 5 5 5 1
lowQualScore : .. . ..... . . . . ........ ... . . ..... ..... .. .. ................................. ........ .......... . . . . . .. . . .... . . ..... . .......... . .................. .. . . . . ... . . . .
lowQualScore : 00 0 55555 3 3 3 0 55555555 444 5 4 99999 33333 22 66 111111111111111111111111111111111 77777777 9999999999 5 7 0 2 3 66 3 3 9999 2 7 22222 3 4444444444 7 222222222222222222 99 1 4 4 1 222 0 7 9 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATATT--G-----TACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATT-AAGTAAAGTCGAAA--------C--------AA--------------CGAAAC--------TACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACTACGATGG--TGAAAAGTCGAAATTA-TTTC-GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
Reference ( family-144 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTTCTAGAACTACTATCGATAATT-GATATGTAATANT--G-----TACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATT-AAGTNAAGTCGAAA--------C--------AA--------------CGAAAC--------TACGATG----------GTGAAAA-GTCGAAACAACGAAACNACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACNACGATGG--TGAAAAGTCGAAATCG-TTTC-GAC-TTTTCACCATCGTAGTTTCGACTNTTCACCATCGTAGTTTC
gi|1 : ATATT--------TATGGTGTCTTA---TT-G-GGA-----CCATTGCGGCATA-----TTTATTAAATT-AAG--AAGCCGAAT--------T--------AA--------------TTAAA
gi|1 : GGTGTCGCA---TT-G-GGG-----CCATCACAGCATA-----TTTATTTAATT-AAtaaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaaCAGTGTCCTG---TT-G-GGG-----TCATCAGGGCATA-----TTAATTATTTT-AAGTTAAGTTGAAA--------C--------AA--------------TGAAAC--------TACGGTA----------GTGAAAA-TT--------CGTAACTATGATGGTG--A-A-Aagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacacTT-G-TATCTTATATT--------TATTGTGTCCTG---GT-A-GGG-----CCATCGCGGCATA-----TTTATTAAAGG-ATGAAAATTCGAAA--------C--------A------------------------------ACAATG----------GTGAAAA-GT--------TGAAACTACGATGGGG--A-A-AAG------------------TGGTGAAAAGTTGAAACTACGA-----TG---GTGAAAT-G--------------------TGG--TGAAAAGTTGAAACTA-T----GA---TTTCACCATCATAGTTACGAATTTTCACTACCGTAGTTTCtcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|10 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatTG----------TTGAAAA-GTCGAAACGACGAAACTACGATTGTG--A-A-AAAAAAACGGAACTA---ATATGTTGAAAAGTCGACACAAAGA------A---GCAACGATGTTGGAACATCGAAACGTCAATGG--TGAAAAGTAGAAATGA-TTTT-Gagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|11 : aataaattttcaataaata-----TACGCTGTCCTG---TT-G-GG------TTATCAAGACATACTAATTTTATTAAACA-TAGAAACTTCGAGA--------CAACTTAAAAA--------------CAAAAC--------TTCGATG----------GTGAAAA-gt
gi|12 : aaatatgttgtagatctagtctctaagt-----TACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATTAAAGT--AGTCGAAA--------C--------AA--------------CGAAAC--------TACGATA----------GTGAAAA-GTCGAAACttaaaaattatagcagtatattcatgg
gi|13 : GCGGCATT-----TTTA----ATT-GAGTCCAGTCGAA--------------------------------------AC--------TACGATG----------ATGAAAA-GCGGAAACAACAAAACTACAATCATG--A-A-AAGT---TGAAACataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|14 : gacacgggtctagctctcctcaaca-GGG-----CCATCGTGTTATG-----TCTGTTATTTC-AAGTAAAGTCGAAA--------C--------AA--------------CGGAAC--------TACGATC----------GTGAATA-GTCGAATGAACGaa
gi|15 : -----TACAGTGTCTAG---TT-A-GGG-----CAATTGTGGCATA-----TTTATTCAA
gi|16 : -----TACGGTGTCCAG---TG-G-GGG-----CCATCGCGGCATA-----T
gi|2 : TCGTAACTAAACTTACT-----TAATTTGATATG-AATAAT--G-----TACGGTGTCCCG---TT-G-GGG-----CAATCGTGGCATA-----TTTATTAAATT-AAGTTAAGTCAAAA--------C--------AA--------------CGAAAC--------AACGATG----------GTGAAAA-GTCGAAATAACGAAACAACGATGGTG--A-A-AAGT---TACAACTA---CGATGGCGAAAAGTCGAAACTACGA-----GG---GTGAAAA-GTCGAAACAACGAAACAACGACGG--TGAAAAGTCGAAATCA-TTTC-GAC-TTTTCACCATAATAGTTTCGACTGTTTACAATCGTAGTTTCgataac
gi|3 : aaccttattattaagagaaaaaaagttgtagcagttacattataaacttttT--G-----TACGGTATCCCG---TT-G-GGGGTGGTCAATCGCGGCAAA-----TTTATTATTTT-AAGAAAAGTCAAAA--------C--------AA--------------CGAAAC--------TACGATG----------GTGAAAA-GTCG-AACAACGAAACAACGATGGTGAAA-A-AAGT---C---ACTA---CGATAATGAAAAGTAGAAACAAC
gi|4 : atgttaatttgttgttatACGGTGTCCCGCCGTT-G-GGA-----CAATCACAGCATA-----TCT-TTAAATT-TAGTCAAGTCGAAA--------A--------AA--------------CGAAACAACTAAACTACGATG----------ATGAAAA-GTCGAAACAATGA--------TGTTG--A-A-AAGT---CGAAAATA---aaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|4 : agaagaaataatccgatgcatgtggacGGTGTCTCG---TT-G-GGG-----CCATCGCGGCGTA-----TTTATTAAA------TAAAGT-------------------------------------------------------------------------AAA-GTCGAAACAACGAAACCACGAT--TG--ACATAGGT---CAAAAC-------------AA----CGAAACTTCGA-----T----GTGAAAA-GTCGAAAC------------------------GTCGAAATTATTTTC-GAC-TTTTCAACATCATTGTTTCGACTTTTCATCATCGTAGTTTatttcgacgtttcgacttttcacatcgaagtttcgttgttttgacctatgtcaatcgtggtttcgttgtttcgactttactttatttaataaatacgccgcgatggccccaacgagacacc
gi|5 : agaagaaataatccgatgcatgtggacacggtgtcccgccgttgggacaatcacagcatatctttaaatttagtcaagtcgaaaaaacgaaacaact-----TAAGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATA-----TTTATTAAATT-AAGTCAAGTCAAAA--------C--------AA--------------CAAAAC--------TACAATG----------GTGAAAA-GTCG-AATGTCG-AATTAAGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTG-AAAGTCGAAACTACGA-----TG---GTGAAAA-ATC
gi|5 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaaAATCAACGAAACTATGATTT--TTCACCATCG---TAG-TTTC-GAC-TTT-CACCATCGTAGTTTCGACTTTTCACCATCTTAATTatagtttcgttgatt
gi|6 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaataaggtgtcccgttggggccatcgcggcatatttattaaattaagtcaagtcaaaacaacaaaactacaatggtgaaaagtcgaatgtcgACGATGGCATGAAAA--------TA-TTTC-GGC-TTTTCACCATCGTTGTTTCCACTTTTCACTATTGTAGTTTC
gi|6 : tgatgaaTCGTTTCTAGAACTACTATCGATAATT-GATATGTAATACTCCGACTTCTACGGTGTCCCG---TTCA-AGG-----CCATCGCGGCATA-----ATTATTTAATT-AATTAAAGTCGAAACTACGAATC--------AA--------------CGAAAC--------TACAATA----------GTGAAAA-GTGGAAACA--------ACGATGGTG--A-A-AAGC---CGAAAgttgattcgtagtttcgactttaattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|7 : tgatgaaacgatggcatgaaaataAAATGA---CGATAGTGAACAGTCGACA--ACGA-----TA---GTGAAAA-GTCG---CAATTA--TTTCAATAG--TGAAAAGTCGAAATTA-TTTTTAAC-ATTTTACCATCGTTGTTTTGACCTTTTACCATAATAGTGTCtttcttttttctgggaatgacttg
gi|7 : gtc--G-----TATGGTGTCCC----TT-GTGAG-----CCATCCCCGCAAA-----TT---TAAAT--------------------------------------------------GA-------------CGATA----------GTGAACA-GTCGA----------CAACGATAGTG--A-A-AAGT---CGCAATTATTTCAATAGTGAAAAGTCGAAATTAaaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|8 : gtcgacactattatggtaaaaggtcaaaacaacgatggtaaaatgttaaaaaAACA-TGAAACTACGATGGTG--A-A-AACA---TGCAACTA---CAATGGTGAAAAGTCGAAACAGCAAAATTTTGAATGTG-AAA-GT--------CGAAACTATGATGG--TG---------AATTA-TTTC-GACTTTTTTACCATCGTTGTTTCGACTTTTCGTCATCATTGTTTCtaaagatatatatggatgatttt
gi|8 : ATTGTGGCATA-----TTTATTAAATC-AAGTAAAGACGAAA--------C--------AATGATGACGAAAAGTCGAAAC--------AACGATG----------GTAAAAAAGTCGAAATAAgtctttacttgatttaataaatatgccacaat
gi|9 : aacatgaaactacgatggtgaaaacatgcaactacaatggtgaaaagtcgaaacagcaaaattttgaatgtgaaagtcgaaactatgatggtgaa--G-----TACGGTATCCCG---TC-T-GGT-----TCATCGCGACATA-----TTTAT-AAATC-AAGTGAAGTCCAAA--------C--------AA--------------CGAAAC--------TACGACGATAAAAAGAAGTAAAAA-GTCGAAAC
Alignments
lowQualScore : 22222 1 222222222222 11111111111111111111111111 11111111111 2222222222 333333333333333333
lowQualScore : 22 1 66666 3 3 33 0 333333333333 444 2 2 55555 2 99 99999999999999999999999999 0 0 11111111111 2 0 3 0 5 0 44 3 3 6666 11 2 666 0 1 0000000000 5 444444444444444444 66 3 1 1 3 5 777 5 1
lowQualScore : .. . ..... . . .. . ............ ... . . ..... . .. .......................... . . ........... . . . . . . .. . . .... .. . ... . . .......... . .................. .. . . . . . ... . .
lowQualScore : 00 0 55555 3 2 55 8 777777777777 444 5 4 99999 4 11 11111111111111111111111111 1 9 22222222222 5 4 2 2 7 5 22 1 1 5555 66 2 444 7 2 3333333333 7 222222222222222222 99 1 4 4 1 0 111 7 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACTACGATGG--TGAAAAGTCGAAATTA-TTT-C-GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
Reference ( family-144 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTAAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACTACGATGG--TGAAAAGTCGAAATTA-TTT-C-GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
gi|1 : ATA-------TT---TATGGTGTCTTA---TT-G-GGA-----CCATTGCGGCATATTTATTAAATT-AAG--AAGCCGAAT--------TAA--------------TTAAA
gi|1 : GGTGTCGCA---TT-G-GGG-----CCATCACAGCATATTTATTTAATT-AAtaaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaaCAGTGTCCTG---TT-G-GGG-----TCATCAGGGCATATTAATTATTTT-AAGTTAAGTTGAAA--------CAA--------------TGAAACTACGGTA----------GTGAAAA-TT--------CGTAACTATGATGGTG--A-A-Aagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacacTT-G-TATCTTATA-------TT---TATTGTGTCCTG---GT-A-GGG-----CCATCGCGGCATATTTATTAAAGG-ATGAAAATTCGAAA--------CA----------------------ACAATG----------GTGAAAA-GT--------TGAAACTACGATGGGG--A-A-AAG------------------TGGTGAAAAGTTGAAACTACGA-----TG---GTGAAAT-G--------------------TGG--TGAAAAGTTGAAACTA-T-----GA---TTTCACCATCATAGTTACGAATTTTCACTACCGTAGTTTCtcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|10 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatTG----------TTGAAAA-GTCGAAACGACGAAACTACGATTGTG--A-A-AAAAAAACGGAACTA---ATATGTTGAAAAGTCGACACAAAGA------A---GCAACGATGTTGGAACATCGAAACGTCAATGG--TGAAAAGTAGAAATGA-TTT-T-Gagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|11 : aataaattttcaataaataTACGCTGTCCTG---TT-G-GG------TTATCAAGACATACTAATTTTATT-AA-----------A--------CAT--------------AGAAACTTCGA--------------GACAA-CTTAAAA--ACAAAACTTCGATGGTG--A-A-AATT---AAAAATTA---gt
gi|12 : aaatatgttgtagatctagtctctaagtTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATTAAAGT--AGTCGAAA--------CAA--------------CGAAACTACGATA----------GTGAAAA-GTCGAAACtagcagtatattcatgg
gi|13 : GCGGCATTTTTA----ATT-GAGTCCAGTCGAA------------------------------ACTACGATG----------ATGAAAA-GCGGAAACAACAAAACTACAATCATG--A-A-AAGT---TGAAACataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|14 : gacacgggtctagctctcctcaaca-GGG-----CCATCGTGTTATGTCTGTTATTTC-AAGTAAAGTCGAAA--------CAA--------------CGGAACTACGATC----------GTGAATA-GTCGAATGAACGaa
gi|15 : TACAGTGTCTAG---TT-A-GGG-----CAATTGTGGCATATTTATTCAA
gi|16 : TACGGTGTCCAG---TG-G-GGG-----CCATCGCGGCATAT
gi|2 : TCGTAACTAAACTTACT-----TAATTTGATATG-AATA-------AT--GTACGGTGTCCCG---TT-G-GGG-----CAATCGTGGCATATTTATTAAATT-AAGTTAAGTCAAAA--------CAA--------------CGAAACAACGATG----------GTGAAAA-GTCGAAATAACGAAACAACGATGGTG--A-A-AAGT---TACAACTA---CGATGGCGAAAAGTCGAAACTACGA-----GG---GTGAAAA-GTCGAAACAACGAAACAACGACGG--TGAAAAGTCGAAATCA-TTT-C-GAC-TTTTCACCATAATAGTTTCGACTGTTTACAATCGTAGTTTCgataac
gi|3 : aaccttattattaagagaaaaaaagttgtagcagttacattataaactttt-------TT--GTACGGTATCCCG---TT-G-GGGGTGGTCAATCGCGGCAAATTTATTATTTT-AAGAAAAGTCAAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCG-AACAACGAAACAACGATGGTGAAA-A-AAGT---C---ACTA---CGATAATGAAAAGTAGAAACAAC
gi|4 : atgttaatttgttgttatACGGTGTCCCGCCGTT-G-GGA-----CAATCACAGCATATCT-TTAAATT-TAGTCAAGTCGAAA----------------------------------------------------AAA---CGAAACAACTAAACTACGATGATG--A-A-AAGT---CGAAACAA---TGATGTTGAAAAGTCGAAAATAaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|4 : agaagaaataatccgatgcatgtggacGGTGTCTCG---TT-G-GGG-----CCATCGCGGCGTATTTATTAAAT------AAAGT---------------------------------------------------------AAA-GTCGAAACAACGAAACCACGAT--TG--ACATAGGT---CAAAAC---------------AA--CGAAACTTCGA-----TG----TGAAAA-GTCGAAAC------------------------GTCGAAATTA-TTTTC-GAC-TTTTCAACATCATTGTTTCGACTTTTCATCATCGTAGTTTatttcgacgtttcgacttttcacatcgaagtttcgttgttttgacctatgtcaatcgtggtttcgttgtttcgactttactttatttaataaatacgccgcgatggccccaacgagacacc
gi|5 : agaagaaataatccgatgcatgtggacacggtgtcccgccgttgggacaatcacagcatatctttaaatttagtcaagtcgaaaaaacgaaacaactTAAGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTCAAGTCAAAA--------CAA--------------CAAAACTACAATG----------GTGAAAA-GTCG-AATGTCG-AATTAAGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTG-AAAGTCGAAACTACGA-----TG---GTGAAAA-ATC
gi|5 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaaAATCAACGAAACTATGATTT--TTCACCATCG----TAGTTT-C-GAC-TTT-CACCATCGTAGTTTCGACTTTTCACCATCTTAATTatagtttcgttgatt
gi|6 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaataaggtgtcccgttggggccatcgcggcatatttattaaattaagtcaagtcaaaacaacaaaactacaatggtgaaaagtcgaatgtcgACGATGGCATGAAAA--------TA-TTT-C-GGC-TTTTCACCATCGTTGTTTCCACTTTTCACTATTGTAGTTTC
gi|6 : tgatgaaTCGTTTCTAGAACTACTATCGATAATT-GATATGTAATACTCCGACTT--CTACGGTGTCCCG---TTCA-AGG-----CCATCGCGGCATAATTATTTAATT-AATTAAAGTCGAAACTACGAATCAA--------------CGAAACTACAATA----------GTGAAAA-GTGGAAACA--------ACGATGGTG--A-A-AAGC---CGAAAgttgattcgtagtttcgactttaattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|7 : tgatgaaacgatggcatgaaaataAAATGA---CGATAGTGAACAGTCGACA--ACGA-----TA---GTGAAAA-GTCG---CAATTA--TTTCAATAG--TGAAAAGTCGAAATTA-TTT-TTAAC-ATTTTACCATCGTTGTTTTGACCTTTTACCATAATAGTGTCtttcttttttctgggaatgacttg
gi|7 : gtcATATATA-TC-------TTTAGTATGGTGTCCC----TT-GTGAG-----CCATCCCCGCAAATTTA-------------------------------AA--------------TGA-----CGATA----------GTGAACA-GTCG--ACA--------ACGATAGTG--A-A-AAGT---CGCAATTATTTCAATAGTGAAAAGTCGAAATTAaaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|8 : gtcgacactattatggtaaaaggtcaaaacaacgatggtaaaatgttaaaaaAACA-TGAAACTACGATGGTG--A-A-AACA---TGCAACTA---CAATGGTGAAAAGTCGAAACAGCAAAATTTTGAATGTG-AAA-GT--------CGAAACTATGATGG--TG---------AATTA-TTT-C-GACTTTTTTACCATCGTTGTTTCGACTTTTCGTCATCATTGTTTCggatgatttt
gi|8 : ATTGTGGCATATTTATTAAATC-AAGTAAAGACGAAA--------CAATGATGACGAAAAGTCGAAACAACGATG----------GTAAAAAAGTCGAAATAAgtctttacttgatttaataaatatgccacaat
gi|9 : aacatgaaactacgatggtgaaaacatgcaactacaatggtgaaaagtcgaaacagcaaaattttgaatgtgaaagtcgaaactatgatggtgaa--GTACGGTATCCCG---TC-T-GGT-----TCATCGCGACATATTTAT-AAATC-AAGTGAAGTCCAAA--------CAA--------------CGAAACTACGACGATAAAAAGAAGTAAAAA-GTCGAAAC
Alignments
lowQualScore : 22222 1 222222222222 11111111111111111111111111 11111111111 2222222222 333333333333333333
lowQualScore : 22 1 66666 3 3 33 0 333333333333 444 2 2 55555 0 2 5 99999999999999999999999999 0 0 11111111111 2 0 3 0 5 0 44 3 3 6666 11 2 666 0 1 0000000000 5 444444444444444444 66 3 1 1 3 5 777 5 1
lowQualScore : .. . ..... . . .. . ............ ... . . ..... . . . .......................... . . ........... . . . . . . .. . . .... .. . ... . . .......... . .................. .. . . . . . ... . .
lowQualScore : 00 0 55555 3 2 55 8 777777777777 444 5 4 99999 6 4 2 11111111111111111111111111 1 9 22222222222 5 4 2 2 7 5 22 1 1 5555 66 2 444 7 2 3333333333 7 222222222222222222 99 1 4 4 1 0 111 7 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACTACGATGG--TGAAAAGTCGAAATTA-TTT-C-GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
Reference ( family-144 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACTACGATGG--TGAAAAGTCGAAATTA-TTT-C-GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
gi|1 : ATA-------TT---TATGGTGTCTTA---TT-G-GGA-----CCATTGCGGCATATTTATTAAATT-AAG--AAGCCGAAT--------TAA--------------TTAAA
gi|1 : GGTGTCGCA---TT-G-GGG-----CCATCACAGCATATTTATTTAATT-AAtaaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaaCAGTGTCCTG---TT-G-GGG-----TCATCAGGGCATATTAATTATTTT-AAGTTAAGTTGAAA--------CAA--------------TGAAACTACGGTA----------GTGAAAA-TT--------CGTAACTATGATGGTG--A-A-Aagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacacTT-G-TATCTTATA-------TT---TATTGTGTCCTG---GT-A-GGG-----CCATCGCGGCATATTTATTAAAGG-ATGAAAATTCGAAA--------CA----------------------ACAATG----------GTGAAAA-GT--------TGAAACTACGATGGGG--A-A-AAG------------------TGGTGAAAAGTTGAAACTACGA-----TG---GTGAAAT-G--------------------TGG--TGAAAAGTTGAAACTA-T-----GA---TTTCACCATCATAGTTACGAATTTTCACTACCGTAGTTTCtcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|10 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatTG----------TTGAAAA-GTCGAAACGACGAAACTACGATTGTG--A-A-AAAAAAACGGAACTA---ATATGTTGAAAAGTCGACACAAAGA------A---GCAACGATGTTGGAACATCGAAACGTCAATGG--TGAAAAGTAGAAATGA-TTT-T-Gagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|11 : aataaattttcaataaataTACGCTGTCCTG---TT-G-GG------TTATCAAGACATACTAATT---TT-A--TTAA------A--------CAT--------------AGAAACTTCGA--------------GACAA-CTTAAAA--ACAAAACTTCGATGGTG--A-A-AATT---AAAAATTA---gt
gi|12 : aaatatgttgtagatctagtctctaagtTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATTAAAGT--AGTCGAAA--------CAA--------------CGAAACTACGATA----------GTGAAAA-GTCGAAACtagcagtatattcatgg
gi|13 : GCGGCATTTTTA----ATT-GAGTCCAGTCGAA------------------------------ACTACGATG----------ATGAAAA-GCGGAAACAACAAAACTACAATCATG--A-A-AAGT---TGAAACataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|14 : gacacgggtctagctctcctcaaca-GGG-----CCATCGTGTTATGTCTGTTATTTC-AAGTAAAGTCGAAA--------CAA--------------CGGAACTACGATC----------GTGAATA-GTCGAATGAACGaa
gi|15 : TACAGTGTCTAG---TT-A-GGG-----CAATTGTGGCATATTTATTCAA
gi|16 : TACGGTGTCCAG---TG-G-GGG-----CCATCGCGGCATAT
gi|2 : TCGTAACTAAACTTACT-----TAATTTGATATG-AATA-------AT--GTACGGTGTCCCG---TT-G-GGG-----CAATCGTGGCATATTTATTAAATT-AAGTTAAGTCAAAA--------CAA--------------CGAAACAACGATG----------GTGAAAA-GTCGAAATAACGAAACAACGATGGTG--A-A-AAGT---TACAACTA---CGATGGCGAAAAGTCGAAACTACGA-----GG---GTGAAAA-GTCGAAACAACGAAACAACGACGG--TGAAAAGTCGAAATCA-TTT-C-GAC-TTTTCACCATAATAGTTTCGACTGTTTACAATCGTAGTTTCgataac
gi|3 : aaccttattattaagagaaaaaaagttgtagcagttacattataaactttt-------TT--GTACGGTATCCCG---TT-G-GGGGTGGTCAATCGCGGCAAATTTATTATTTT-AAGAAAAGTCAAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCG-AACAACGAAACAACGATGGTGAAA-A-AAGT---C---ACTA---CGATAATGAAAAGTAGAAACAAC
gi|4 : atgttaatttgttgttatACGGTGTCCCGCCGTT-G-GGA-----CAATCACAGCATATCT-TTAAATT-TAGTCAAGTCGAAA----------------------------------------------------AAA---CGAAACAACTAAACTACGATGATG--A-A-AAGT---CGAAACAA---TGATGTTGAAAAGTCGAAAATAaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|4 : agaagaaataatccgatgcatgtggacGGTGTCTCG---TT-G-GGG-----CCATCGCGGCGTATTTATTAAA------TAAAGT---------------------------------------------------------AAA-GTCGAAACAACGAAACCACGAT--TG--ACATAGGT---CAAAAC---------------AA--CGAAACTTCGA-----TG----TGAAAA-GTCGAAAC------------------------GTCGAAATTA-TTTTC-GAC-TTTTCAACATCATTGTTTCGACTTTTCATCATCGTAGTTTatttcgacgtttcgacttttcacatcgaagtttcgttgttttgacctatgtcaatcgtggtttcgttgtttcgactttactttatttaataaatacgccgcgatggccccaacgagacacc
gi|5 : agaagaaataatccgatgcatgtggacacggtgtcccgccgttgggacaatcacagcatatctttaaatttagtcaagtcgaaaaaacgaaacaactTAAGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTCAAGTCAAAA--------CAA--------------CAAAACTACAATG----------GTGAAAA-GTCG-AATGTCG-AATTAAGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTG-AAAGTCGAAACTACGA-----TG---GTGAAAA-ATC
gi|5 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaaAATCAACGAAACTATGATTT--TTCACCATCG----TAGTTT-C-GAC-TTT-CACCATCGTAGTTTCGACTTTTCACCATCTTAATTatagtttcgttgatt
gi|6 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaataaggtgtcccgttggggccatcgcggcatatttattaaattaagtcaagtcaaaacaacaaaactacaatggtgaaaagtcgaatgtcgACGATGGCATGAAAA--------TA-TTT-C-GGC-TTTTCACCATCGTTGTTTCCACTTTTCACTATTGTAGTTTC
gi|6 : tgatgaaTCGTTTCTAGAACTACTATCGATAATT-GATATGTAATACTCCGACTT--CTACGGTGTCCCG---TTCA-AGG-----CCATCGCGGCATAATTATTTAATT-AATTAAAGTCGAAACTACGAATCAA--------------CGAAACTACAATA----------GTGAAAA-GTGGAAACA--------ACGATGGTG--A-A-AAGC---CGAAAgttgattcgtagtttcgactttaattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|7 : tgatgaaacgatggcatgaaaataAAATGA---CGATAGTGAACAGTCGACA--ACGA-----TA---GTGAAAA-GTCG---CAATTA--TTTCAATAG--TGAAAAGTCGAAATTA-TTT-TTAAC-ATTTTACCATCGTTGTTTTGACCTTTTACCATAATAGTGTCtttcttttttctgggaatgacttg
gi|7 : gtcATATATA-TC-------TTTAGTATGGTGTCCC----TT-GTGAG-----CCATCCCCGCAAATTTA-------------------------------AA--------------TGA-----CGATA----------GTGAACA-GTCG--ACA--------ACGATAGTG--A-A-AAGT---CGCAATTATTTCAATAGTGAAAAGTCGAAATTAaaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|8 : gtcgacactattatggtaaaaggtcaaaacaacgatggtaaaatgttaaaaaAACA-TGAAACTACGATGGTG--A-A-AACA---TGCAACTA---CAATGGTGAAAAGTCGAAACAGCAAAATTTTGAATGTG-AAA-GT--------CGAAACTATGATGG--TG---------AATTA-TTT-C-GACTTTTTTACCATCGTTGTTTCGACTTTTCGTCATCATTGTTTCggatgatttt
gi|8 : ATTGTGGCATATTTATTAAATC-AAGTAAAGACGAAA--------CAATGATGACGAAAAGTCGAAACAACGATG----------GTAAAAAAGTCGAAATAAgtctttacttgatttaataaatatgccacaat
gi|9 : aacatgaaactacgatggtgaaaacatgcaactacaatggtgaaaagtcgaaacagcaaaattttgaatgtgaaagtcgaaactatgatggtgaa--GTACGGTATCCCG---TC-T-GGT-----TCATCGCGACATATTTAT-AAATC-AAGTGAAGTCCAAA--------CAA--------------CGAAACTACGACGATAAAAAGAAGTAAAAA-GTCGAAAC
blockSeqs : TT A ATCGA T A GT CTCCGACTTC CCG C T GTGGT A T CAATGATGACGAAAAGTC GATAAAAAGAA A A A AA C T AAAA GG T TTT A AATTTTGAAT T TGGAACATCGAAACGTCA CA A G A A G TC T A
blockSeqs : . A AT TTTAG . . . . . A CTACGAATCAAC G . A A . . . T AA T . T GG . CGAAACAACGAAACAACG . A G C A . TT . T
blockSeqs : A G ATG . . . . . T CAAT G . A A . . . T GA T . A TG . CGCAATTATTTCA . C G C A . T . A
blockSeqs : TTG . . . . . C CATA A . A A . . . T AC T . T TG . CGAAACTATG . A A C A . C . T
blockSeqs : TT . . . . . A CAAC G . A A . . . T GA A . T TA . CGAAAC . A G C . . C . T
blockSeqs : . . . . . T CAAC C . A A . . . T AA T . T A . . . . . . . C . T
blockSeqs : . . . . . A CAAC G . A A . . . T GA G . T . . . . . . C
blockSeqs : . . . . . C CAAC G . A A . . . T GA T . A
blockSeqs : . . . . . A CAAC G . A T . . . C GC T . .
blockSeqs : . . . . . C CAAC A . A A . . . T GC . .
blockSeqs : . . . . . A AAT A . A . . . . A .
blockSeqs : . . . . . A CA G . . . . . .
blockSeqs : . . . . . G . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : TTG********* T*** GA CGAAACGACG******** C**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACAACGAAACTACGATGG--TGAAAAGTCGAAATTA-TTT-C-GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATATTG---------TACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG--A-A-AAGT---CGAAACTA---CGATGGTGAAAAGTCGAAACTACGA-----TG---GTGAAAA-GTCGAAACGACG--------ATGG--TGAAAAGTCGAAATTA-TTTC--GAC-TTTTCACCATCGTNGTTTCGACTTTTCACCATCGTAGTTTC
Alignments
lowQualScore : 22222 1 222222222222 11111111111111111111111111 11111111111 11111111 11111 1111 222222222222222222222222 111 11111
lowQualScore : 22 1 66666 3 3 33 0 333333333333 444 2 2 55555 0 2 5 99999999999999999999999999 0 0 11111111111 2 0 3 0 5 0 999 3 3 0 11 2 666 0 44444444 1 8888 22222 1111 2 0 555555555555555555555555 0 999999999 1 3 999 66 000 44444 1
lowQualScore : .. . ..... . . .. . ............ ... . . ..... . . . .......................... . . ........... . . . . . . ... . . . .. . ... . ........ . .... ..... .... . . ........................ . ......... . . ... .. ... ..... .
lowQualScore : 00 0 55555 3 2 55 8 777777777777 444 5 4 99999 6 4 2 11111111111111111111111111 1 9 22222222222 5 4 2 2 7 5 666 1 1 7 66 2 444 7 55555555 2 5555 55555 2222 0 2 888888888888888888888888 2 000000000 4 1 111 00 000 33333 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG---A-A-AAGTCGAAACTA---CGATGGTGAAAAGTC--------GAAACTA----CGA-----TG---GTGAAAAGT--------CGAA-----ACGA---CGATGG--TGAAAAGTCGAAATTATTT-C-GAC-TT---TTCACCAT-----CGTTGTTTCGACTTTTCACCATCGTAGTTTC
Reference ( family-144 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTNNCTAGANCTACTATCGATAATT-GATATGTAATA-------TT--GTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTNAAGTCGAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCGAAACAACGAAACTACGATGGTG---A-A-AAGTCGAAACTA---CGATGGTGAAAAGTC--------GAAACTA----CGA-----TG---GTGAAAAGT--------CGAA-----ACGA---CGATGG--TGAAAAGTCGAAATTATTT-C-GAC-TT---TTCACCAT-----CGTNGTTTCGACTTTTCACCATCGTAGTTTC
gi|1 : ATA-------TT---TATGGTGTCTTA---TT-G-GGA-----CCATTGCGGCATATTTATTAAATT-AAG--AAGCCGAAT--------TAA--------------TTAAA
gi|1 : GGTGTCGCA---TT-G-GGG-----CCATCACAGCATATTTATTTAATT-AAtaaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaaCAGTGTCCTG---TT-G-GGG-----TCATCAGGGCATATTAATTATTTT-AAGTTAAGTTGAAA--------CAA--------------TGAAACTACGGTA----------GTGAAAA-TT--------CGTAACTATGATGGTG---A-A-Aagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatgaaactacggtagtgaaaattcgtaactatgatggtgaaatcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|1 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacacTT-G-TATCTTATA-------TT---TATTGTGTCCTG---GT-A-GGG-----CCATCGCGGCATATTTATTAAAGG-ATGAAAATTCGAAA--------CA----------------------ACAATG----------GTGAAAA-GT--------TGAAACTACGATGGGG---A-A-AAG---------------TGGTGAAAAGTT--------GAAACTA----CGA-----TG---GTGAAATG----------------------------TGG--TGAAAAGTTGAAACTAT-----GA---T---TTCACCAT-----CATAGTTACGAATTTTCACTACCGTAGTTTCtcatagtttcaacttttcaccacatttcaccatcgtagtttcaacttttcaccacttttccccatcgtagtttcaacttttcaccattgttgtttcgaattttcatcctttaataaatatgccgcgatggccctaccaggacacaataaatataagatacaaagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|10 : atatttatggtgtcttattgggaccattgcggcatatttattaaattaagaagccgaattaattaaataaatatgctgtgatggccccaatgcgacaccagtgtcctgttggggtcatcagggcatattaattattttaagttaagttgaaacaatTG----------TTGAAAA-GTCGAAACGACGAAACTACGATTGTGAAAA-A-AAAACGGAACTA---ATATGTTGAAAAGTCGACACAAAGAAGCAA----CGA-----TG---TTGGAACAT--------CGAA-----ACGT---CAATGG--TGAAAAGTAGAAATGATTT-T-Gagcaacgaacacattcgacctttgaattttaactggcagccatttttcacagattgttcatatcaaatagcatttcatttaatccaatgtcaatattgatataataaaattccttcattgaacatgtttagaaattttactattgtttctatgaag
gi|11 : aataaattttcaataaataTACGCTGTCCTG---TT-G-GG------TTATCAAGACATACTAATT---TT-A--TTAA------A--------CAT--------------AGAAACTTCGA--------------GACAA-CTTAAAA--ACAAAACTTCGATGGTG---A-A-AATTAAAAATTA---gt
gi|12 : aaatatgttgtagatctagtctctaagtTACGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATTAAAGT--AGTCGAAA--------CAA--------------CGAAACTACGATA----------GTGAAAA-GTCGAAACtagcagtatattcatgg
gi|13 : GCGGCATTTTTA----ATT-GAGTCCAGTCGAA------------------------------ACTACGATG----------ATGAAAA-GCGGAAACAACAAAACTACAATCATG---A-A-AAGTTGAAACataatgagcagcagcaacatgccgatacactaatttgaaaacttg
gi|14 : gacacgggtctagctctcctcaaca-GGG-----CCATCGTGTTATGTCTGTTATTTC-AAGTAAAGTCGAAA--------CAA--------------CGGAACTACGATC----------GTGAATA-GTCGAATGAACGaa
gi|15 : TACAGTGTCTAG---TT-A-GGG-----CAATTGTGGCATATTTATTCAA
gi|16 : TACGGTGTCCAG---TG-G-GGG-----CCATCGCGGCATAT
gi|2 : TCGTAACTAAACTTACT-----TAATTTGATATG-AATA-------AT--GTACGGTGTCCCG---TT-G-GGG-----CAATCGTGGCATATTTATTAAATT-AAGTTAAGTCAAAA--------CAA--------------CGAAACAACGATG----------GTGAAAA-GTCGAAATAACGAAACAACGATGGTG---A-A-AAGTTACAACTA---CGATGGCGAAAAGTC--------GAAACTA----CGA-----GG---GTGAAAAGTCGAAACAACGAA-----ACAA---CGACGG--TGAAAAGTCGAAATCATTT-C-GAC-TT---TTCACCAT-----AATAGTTTCGACTGTTTACAATCGTAGTTTCgataac
gi|3 : aaccttattattaagagaaaaaaagttgtagcagttacattataaactttt-------TT--GTACGGTATCCCG---TT-G-GGGGTGGTCAATCGCGGCAAATTTATTATTTT-AAGAAAAGTCAAAA--------CAA--------------CGAAACTACGATG----------GTGAAAA-GTCG-AACAACGAAACAACGATGGTGAA-A-A-AAGTC---ACTA---CGATAATGAAAAGTA--------GAAACAA----C
gi|4 : atgttaatttgttgttatACGGTGTCCCGCCGTT-G-GGA-----CAATCACAGCATATCT-TTAAATT-TAGTCAAGTCGAAA----------------------------------------------------AAA---CGAAACAACTAAACTACGATGATG---A-A-AAGTCGAAACAA---TGATGTTGAAAAGTC--------GAAAATAATTTCGA-----CG---TT------T--------CGACTTTTCACAT---CGAAGT--T------TCG---TTGTTT-T-GAC-CTATGTCAATCGTGGTTTCGTTGTTTCGACTTTaagagacgttacgacatacatgcaatgactgaccgaaactagtatatattgttataaatagaatctaggggaaataatatttatatgtaataaaacaaccgttgatttgttgatattctggtgtttttatgta
gi|4 : agaagaaataatccgatgcatgtggacGGTGTCTCG---TT-G-GGG-----CCATCGCGGCGTATTTATTAAA------TAAAGT---------------------------------------------------------AAA-GTCGAAACAACGAAACCACGAT--TG---ACATAGGTCAAAAC---------------AA--C--------GAAACTT----CGA-----TG----TGAAAAGT--------CGAA-----ACG-------------------TCGAAATTATTTTC-GAC-TT---TTCAACAT-----CATTGTTTCGACTTTTCATCATCGTAGTTTactttatttaataaatacgccgcgatggccccaacgagacacc
gi|5 : agaagaaataatccgatgcatgtggacacggtgtcccgccgttgggacaatcacagcatatctttaaatttagtcaagtcgaaaaaacgaaacaactTAAGGTGTCCCG---TT-G-GGG-----CCATCGCGGCATATTTATTAAATT-AAGTCAAGTCAAAA--------CAA--------------CAAAACTACAATG----------GTGAAAA-GTCG-AATGTCG-AATTAAGATGGTG---A-A-AAGTCGAAACTA---CGATGGTG-AAAGTC--------GAAACTA----CGA-----TG---GTGAAAAAT--------C
gi|6 : aactccaactgcaaaatatttgaaaatatagggaggagttcgtgatgtcatacaatcgaaatagcaaactaaatgacgtacctctgtttaaA---CGATGGCATGAAAA--------TATTT-C-GGC-TT---TTCACCAT-----CGTTGTTTCCACTTTTCACTATTGTAGTTTCatagtttcgttgatt
gi|6 : tgatgaaTCGTTTCTAGAACTACTATCGATAATT-GATATGTAATACTCCGACTT--CTACGGTGTCCCG---TTCA-AGG-----CCATCGCGGCATAATTATTTAATT-AATTAAAGTCGAAACTACGAATCAA--------------CGAAACTACAATA----------GTGAAAA-GTGGAAACA--------ACGATGGTG---A-A-AAGCCGAAAgttgattcgtagtttcgactttaattaattaaataattatgccgcgatggccttgaacgggacaccgtagaagtcggagtattacatatcaattatcgatagtagttctagaaacgatttcttttttctgggaatgacttg
gi|7 : tgatgaaacgatggcatgaaaataAAATGA---CGATAGTGAACAGTC--------GACA--A----CGA-----TA---GTGAAAAGT--------CGCA-----ATTATTTCAATAG--TGAAAAGTCGAAATTATTT-TTAAC-AT---TTTACCAT-----CGTTGTTTTGACCTTTTACCATAATAGTGTCtttcttttttctgggaatgacttg
gi|7 : gtcATATATA-TC-------TTTAGTATGGTGTCCC----TT-GTGAG-----CCATCCCCGCAAATTTA-------------------------------AA--------------TGA-----CGATA----------GTGAACA-GTCG--ACA--------ACGATAGTG---A-A-AAGTCGCAATTATTTCAATAGTGAAAAGTC--------GAAATTA----aaatttgcggggatggctcacaagggacaccatactaaagatatatatggatgatttt
gi|8 : gtcgacactattatggtaaaaggtcaaaacaacgatggtaaaatgttaaaaaAACA-TGAAACTACGATGGTG---A-A-AACATGCAACTA---CAATGGTGAAAAGTC--------GAAACAG----CAAAATTTTGAATGTG-AAAGT--------CGAA-----ACTA---TGATGG--TG---------AATTATTT-C-GACTTT---TTTACCAT-----CGTTGTTTCGACTTTTCGTCATCATTGTTTCggatgatttt
gi|8 : ATTGTGGCATATTTATTAAATC-AAGTAAAGACGAAA--------CAATGATGACGAAAAGTCGAAACAACGATG----------GTAAAAAAGTCGAAATAAgtctttacttgatttaataaatatgccacaat
gi|9 : aacatgaaactacgatggtgaaaacatgcaactacaatggtgaaaagtcgaaacagcaaaattttgaatgtgaaagtcgaaactatgatggtgaa--GTACGGTATCCCG---TC-T-GGT-----TCATCGCGACATATTTAT-AAATC-AAGTGAAGTCCAAA--------CAA--------------CGAAACTACGACGATAAAAAGAAGTAAAAA-GTCGAAAC