lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111 2222222222222222222222222222222
lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 11 11 11 11 11111 66666666 11 1 444444444 1 666666666666666666666666666666666666666666666666 11111 9999999999999 111 22222222 11111 4444444444444444444444444444444444444 1 444444444444444444444444444 1 2222222222 11 1 66666666666666666666 222 6666666666666666666666666666666 111 444444444444444 1 11 22 222 22 111 7777777777777777777
lowQualScore : 1 9 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 22 00 66 7 66 6 66666 77777777 8 44 4 3 0 0 5 333333333 2 0 0 000000000000000000000000000000000000000000000000 77777 0 3 6666666666666 111 5 77777777 777 55 00000 0 9 777 1111111111111111111111111111111111111 0 0 333333333333333333333333333 5 5 6 6 0 9 7777777777 33 5 77777777777777777777 3 111 6 0000000000000000000000000000000 4 6 111 66 3 88 555555555555555 6 3 7 3 1 88 00 333 3 22 1 3 888 2222222222222222222 0 0
lowQualScore : . . . ............................................................................................................................ .. .. .. .. . .. . ..... ........ . .. . . . . . ......... . . . ................................................ ..... . . ............. ... . ........ ... .. ..... . . ... ..................................... . . ........................... . . . . . . .......... .. . .................... . ... . ............................... . . ... .. . .. ............... . . . . . .. .. ... . .. . . ... ................... . .
lowQualScore : 0 7 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 00 44 44 33 0 00 7 77777 99999999 0 00 0 2 8 8 0 888888888 0 2 0 000000000000000000000000000000000000000000000000 33333 2 0 0000000000000 777 0 22222222 888 55 00000 7 4 000 6666666666666666666666666666666666666 2 4 000000000000000000000000000 7 0 0 6 2 2 5555555555 00 0 33333333333333333333 0 000 0 5555555555555555555555555555555 0 0 000 55 0 00 555555555555555 0 7 7 7 0 33 00 333 7 33 0 7 777 7777777777777777777 7 7
consensus : TAAAGCGGCATAACCAGTATCTGAANATATTT-----------------CT--NTT---------------------TATGAA--TGAC---AAACA--T-----TTTCG-G-------AA------TTCGC--ATCGCCT----TCGGT-----GCA--TTN-ATAACGGCCGATACCTCTNTTACACGTGNATAA-A-----TCGTGT-GT-T-T-TAAATATANATTTACCGATCAGTAATT---CTA---ACATGCAA-ATTAGCT----NCTTC-CTGACG----ATATTT-----G-AA-ATTTCC-----GATTTAATCGTATATACTCGNCCAATTATGTCACCGTTCACCA---GGTC-GCTA---GA---TA---CG--TGCA-----AAGATATAAATGCATA---TATG---G-------AC-----C---TTTG-----TTTT--ATTTTGTTGGAA-C-ANA---TT-TC--T----TC--G-A-TATGAGAAGCCGTTNATGGAGCAATGTANGGACAC-AATAGTGTTGTTAGGGAAATTAA-CAAAAAGCGACAACGATGCGTCTTGTCATGTGATTCG--------------AAGTCATAAT-CAGTGGATANGACCGCTNCGCTANNTAGGNACANNACANNNTCAGCCGTATCAATCT-AANTTNAACTTAANCGCTTA--CT-GGGTTTAATCG---ATGNTGCCCGGAAATTTCCGAACGTTTACG--C---ANAACTAAG----ATTATATAT
Reference ( gi|2 ) : TAAAGTGGCATAACTAGTATCTGAATATATTT-----------------CT--GTT---------------------TATGAA--TGGA---AAATA--T-----T-----G-------GA------TTCGC--ATTGCCT----TTGAT-----GCA--TTT-ATAACAACCGATACCTCACTTAAACGTTAATAA-A-----TCGTATAGTATAT-TAAATCTATATTTACTGATCATTAATT---ATG---ATGTGCAA-ATTAGCT----GCTCCGCTGACG----ATATTTAT--AATAACATTTCC-----TATTTAATTGGATATACTCGTCCAATT------TTGTTGGCCA---GGTC-GCTA---AT---TA---TG--TGCA-----AAGATATAAACGCATA---TATG---G-------AC-----T---TTTA-----TTCCC-ATTTTGCTGGAA-C-GCA---TT-TC--T----TT--G-A-TATGAGAAGCGGCTTATGGAGCAATGTAGGAATAC-AATAGTGTTGCTATGGAAATTAA--AAAAAGCAAT-AC-ATACTTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATAACATATTTGGCCGTTTTAATCTTAACTTTAACTTAACCACTTA--CTAAGGTTTAATCG---ATGCTGACCGGAAATTTTCGAACAATTACG--T-TTATATCTAAA----ATCATACAT
gi|1 : TAAAGCGGCATAACCAGTATCTGAAGATATTT-----------------CT--TTT---------------------TTTAAACTTCGACAAAAACAACT-----T-----GTTCATGAGAAACATTTTCGTGAATT--CT----CTGAT-----GCA--TTA-ATAACGGCCTGTATCTCTGATAAACGTGAATAT-A-----TCGTGT----T-T-TAAATTTAAATTTACTGATCAGTAAAT---CTT---CTATGCAA-ATTAGCT---------------------------------AA-ATTTAC-----GATTAAATCGTATATACTCGGCCAATT------CCG----CCA-----TC-TTTAGATAT---TAGAACGGTTGCATACATAAGAT-TAAATGCATA---TATGCAAA-------AC-----TATATTTG-----TTTTCTATTTTGTTGGAA-C-ATA---TT-TTATT----TT--G-AATATGAGAAGCCGTTCATAGCGCAATGTAGGGAAAT--GTAGTGTT-TTAGATAAATTAACCAAAAA
gi|3 : TAAAGCGGCATAATCTGTATCTGAAGACATTC-----------------AT--TTTACAAAAAAAAAAACACTTCCTTATGAA--TG-A---CAACA--T-----TTTCGAG-------AA------TACCC--ATGAACT----TCGGT-----TCA--TTT-ATAAATGTCGATTTCTCTTTTAAATGTAAACAA-A-----TCGTGT--T---T-TAGATATATA------GATCAGTAATT---TTA---ACATTTAACAATAGCT----CCATCTCTGACG----GAAATTATCGAA-AATATTTCT-----GATTTAATCGTGTATAGTCAGCCAtaagtcataatcagtagatatgaccgctatgttaagtaggaacattacatttttccgtatcaatctaagtttaaacttaagcacttactaatatttaatcgatgttgtccagaaatttccgaacgtttacgcaaaataactaggattattcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|4 : aatAGAGTGGCATAACAAGTAATTGACTTTATTTTATAAAGCAATTAACACCTTAATT---------------------T-TGAA--TGAC---AAACA--TATTCGT-----G-------AA------TATGC--ATCGCCT----TCAGT-----GGA--TTT-ATCACAGCCAATACCTCTATTACACGTGGATAA-A-----TCGTGC-GTGT-T-TTAATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT----GCTTCATTGAAGGAAAATATT------GTAAAATGTCCAATGATATTTG--CGCATATGTTTGTCtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|8 : taaAATATATT----------------------G------------------------ATGAT--TAAC---AAACA--T-----TTAGT-G-------AA------ATTAC--ATCGCTT----TC--T-----GCAGATTA-ATAACAGCTGATACCTCATTTGCACGTGTTTAA-A-----TCGTGTggtacagtaaattgcattttaat
gi|14 : tttaaagcgacatacataatcattaactaaagatgtgtgttttataaaaatatgagc--GTT---------------------TATTAA--TGAC---AAACA--T-----TTTCGCG-------AA------TTTTC--ATCGCCTGCCATTGATTTATAACA--TCCGATAACGTCCGATACCTCTCTTACATGTCAATAATATATATTTATATATTATATATAAATttta
gi|10 : taacacctaTCTCTTACACATACATAG-A-----TCG----GT-T-T-TAAATACAAATTTACCGATCAGTGATT---CTA---ACATGCAA-ATTGTCTTAAAATTT--CTGATG----ATATTTat
gi|17 : TATACTCGTCCAATTATGTCATCGTTCACTATTAGAACAGCTA---ATAAATA---TT--TGCA-----AAGATATAAATGCATA---TATG---G-------AC-----gcccatacgcctgtgacaaccatacatgctcagcaaatttcatcatccttaaacattaaa
gi|13 : ---GGTC-GCTC---GG---TA---TG--TGCA-----AAGATATAAATGCATA---AATG---A-------ACAAATAC---TTT------TTTTC-ATTTTGTTCGAATC-TCAGTTTT-TT--T----TT--T-A-TATAAGAAGCCGTTTAaaatatattttttcaagttg
gi|19 : tcgaccaattccgtcatcactcagtataagaac---GGTC-GCTA---GA---TA---TG--TACA-----AATATATAAATGTATA---TATG---G-------CC-----T---TTTT-----TTCT---TTTTGTTGGTA-C-c
gi|20 : ttagtatgaaaac---GATC-GCTG---AA---TA---CG--TGCA-----AAAAGTTTAATGCATA---AATG---G-------AC-----C---ATTA-----TTTC---TTTTctaaattt
gi|9 : atcattcagtagtacaac---GGTC-TCCA---GA---TA---TG--TTAA-----AAGATATAAATGCAAA---TATG---G-------CCAAA--C---TTTG-----TT-----TTTTA-TGG-A-C-AAA---GT-TT--T----TA--T-A-TATTAGAAGtca
gi|22 : ataatacacgggcaattccatcatccttctgaataactgaatGTC-GTTA---GA---TA---TG--TGCA-----AAGACATAAATGCGTC---TATC---G-------AC-----ttttatatattagaagccgttaaggagc
gi|23 : ca-GCTA---GA---TA---CA--TGCA-----AAAATATAAATGCATA---TATG---G-------AC-----aaacatttcttttta
gi|11 : ca---TA---TG--TACA-----AA-ATATAAATACATAATATATG---GTAAATAAGT-----T---TTTA-----T-----ATTTTGTTTGAG-CCGAA---TT-TTA-T----TT--GGA-CATGAGAAGTCGTTCATGG--CCGTACAGTGGCAA-AATAGTGTTGCTAaaatgtttat
gi|15 : cgtcactagatagatcta--TGCA-----AAGTTATAAA-----A---TATG---G-------AC-----C---ACTACATATTTTTC-ATTTTGTTGGAA-----A---TTATC--T----TTTAT-A-TATAAGAAGgtgaat
gi|3 : tactctgtcatatccgtcatcattcagtattagaacggtttctcgatctt---TTTG-----TTTTA-ATTTTATTGGAG-C-ATA---TA-TC--TGTTTTC--G-A-TATGAGAAGCCGTTGAAGAAGCAAAGT-TGAACAC-AATAGTGTTG-TAGGGAAA-TAAGCAAAAAG-GAT-A--ATGTTTC---TCATGTGATTCG---------------AGTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAAACAAGATCAGTCATAT--ATTTTTAGTTGAACTTAATCGCTTA--CTTGGGTTTAGTTG---ATGATGCCCGGAAATTCTCTAATGTTTACGGAT-TCAAAACTGAG----ATTATATAT
gi|12 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaa---TTTG-----TTTCA-ATTTTGTTGGAG-C-ATA---TA-TC--TGTTTTC--G-A-TGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACAAACAGTGTTGTTAGGGAAAT--------AAGCAACAACGATACGTTTTGTTATGTGATTCGactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|1 : gacaaatgtaaAAGTCATAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATTACATTTTT--CCGTATCAATCTAAGTTTAAACTTAAGCACTTA--CTAATATTTAATCG---ATGTTGTCCAGAAATTTCCGAACGTTTACG--CAAAATAACTAGG----ATTATTCAT
gi|7 : taaagcggcataaccagtatctgaagatatttctttttttaaacttcgacaaaaacaacttgttcatgagaaacattttcgtgaattctctgatgcattaataacggcctgtatctctgataaacgtgaatatatcgtgttttaaatttaaatttactgatcagtaaatcttctatgcaaattagctaaatttacgattaaatcgtatatactcggccaattccgccatctttagatattagaacggttgcatacataagattaaatgcatatatgcaaaactatatttgttttctattttgttggaacatattttattttgaatatgagaagccgttcatagcgcaatgtagggaaatgtagtgttttagataaattaaccaaaaatATCT-AACTTTAAATTAACTGCTTATCCT--GGTTTAATCGAGAATGCT---CGGAAATTTCCAAATATTTACG-------GATCTAAACTAGATCAGATATactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|6 ): TAATGCGGCATAACCAGTGACTAAAAAGGTTGAATTTAAAAGAAACATTTTGAAATCGTTATTTTTCCATCGCCTTCTTTTGATTTATAACAGCATATAACTCGAAACATATTACACGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCCAGTCGTTA
Unaligned ( gi|16 ): TTAAACCGACATAACCAGTAAATAAAGATGTATAAAAAAATAAACAACATATCTATGATTGACAAACTTTTTCTTTGAATTTGCATCGCCTTTCGTGAATAAC
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444 222222 22222222222 1111 222222222 111111 11111 33333 111 11 0000000000000000000000000000000000000000 1111 555555555555555555 333333333333 111111 4444444444444444444444444444444444444444444 111111 11111 00000000000000000000000000000000000000000000000000000000000 11 1 1 11 11 22222 6666666666666
lowQualScore : 4 1 666666666666666666666666666666666666666666666666666666666666666666666666666 999999 66666666666 0000 66 000000000 66 2 444444 1 11 44444 44444 1 1 4 444 8 11 8 2222222222222222222222222222222222222222 0 1 1 6666 999 777777777777777777 3 666 1 55 99999 666 666 99999 111111111111 5 888888 2222222222222222222222222222222222222222222 1 444 777777 99 0 99999 33333333333333333333333333333333333333333333333333333333333 0 1 0 1 0 22 1 0 22 333 33 9 0 11 1 1 33 88888 1 0 0 2222222222222 7
lowQualScore : . . ........................................................................... ...... ........... .... .. ......... .. . ...... . .. ..... ..... . . . ... . .. . ........................................ . . . .... ... .................. . ... . .. ..... ... ... ..... ............ . ...... ........................................... . ... ...... .. . ..... ........................................................... . . . . . .. . . .. ... .. . . .. . . .. ..... . . . ............. .
lowQualScore : 0 0 666666666666666666666666666666666666666666666666666666666666666666666666666 666666 88888888888 6666 88 111111111 00 7 444444 0 22 33333 11111 7 0 6 000 0 00 0 0000000000000000000000000000000000000000 8 2 0 1111 777 000000000000000000 6 444 6 00 11111 444 444 11111 111111111111 7 555555 4444444444444444444444444444444444444444444 0 000 444444 00 8 22222 33333333333333333333333333333333333333333333333333333333333 7 0 7 0 7 00 0 7 00 000 00 0 0 00 0 0 88 55555 0 2 2 2222222222222 0
consensus : TAAAGCGGCATAACCAGTANCTGAAGATATTT-----------------C-TN--TT---------------------TATGAA-----------------------TGACAAACATTT-TCGT-GAATTCG---------CATCGCCT----TCGGT-----GC--ATTN-ATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGAC-G----ATAT--T-TG-----AA---ATTTCCGATTTAATCGTATATACTCGGCCAATTCC--GTCATCNTTC------ACTA-------GGTC-GCTAG---ATACG--TGCA-----AAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C--A-TATT-----T--T--T----TNG-ATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TTTTGTCACGTGATTCG--------------A-GTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATAACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
Reference ( family-1415 ) : TAAAGCGGCATAACCAGTATCTGAANATATTT-----------------C-TN--TT---------------------TATGAA-----------------------TGACAAACATTT-TCG--GAATTCG---------CATCGCCT----TCGGT-----GC--ATTN-ATAACGGCCGATACCTC------TNTTACACGTGNATAA-----ATCGT---GTGTTTTAAATATANATTTACCGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---NCTTC-CTGAC-G----ATAT--T-TG-----AA---ATTTCCGATTTAATCGTATATACTCGNCCAATTAT--GTCACCGTTC------ACCA-------GGTC-GCTAG---ATACG--TGCA-----AAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--T-A-TTTTGTTGGA----------A---C--A-NATT-----T--C--T----TCG-ATATGAGAAGCCGTTNATGGAGCAATGT--ANGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGACAACGATGCGTCTTGTCATGTGATTCG--------------AAGTCATAAT-CAGTGGATANGACCGCTNCGCTANNTAGGNACANNACANNNTCAGCCGTATCAATC-TAA-NTTNAACTTAANCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATTATATAT
gi|1 : TAAAGCGGCATAACCAGTATCTGAAGATATTT-----------------C-TT--TT---------------------TTTAAACTTCGACAAAAACAACTTGTTCATGAGAAACATTT-TCGT-GAATTC-----------------T----CTGAT-----GC--ATTA-ATAACGGCCTGTATCTC------TGATAAACGTGAATAT-----ATCGT---GT--TTTAAATTTAAATTTACTGATCAGTAAATC---TT-CTATG--CAA-ATTAGCT-----------------------------------AA---ATTTACGATTAAATCGTATATACTCGGCCAATTCC--GCCATCTTT----------A-------GAT--ATTAG---A-ACGGTTGCATACATAAGAT-TAAATGCATA---TATGCAAA-----AC-----TATA---TTTGTTTTCT-A-TTTTGTTGGA----------A---C--A-TATT-----TTAT--T----TTGAATATGAGAAGCCGTTCATAGCGCAATGT--AGGGAAAT-GTAGTGTT-TTAGATAAATTAACCAAAA---ATAA-----------GTCA-----------------------------TAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATTACATTTTT--CCGTATCAATC-TAAGTTTAAACTTAAGCACTTA--CT-AATATTTAATCGATGTTGTCCAGAAATTTCCGAACGTTTACG----CAAAA---TAACTAGGATTAT
gi|10 : TC------TCTTACACATACATAG-----ATCG------GTTTTAAATACAAATTTACCGATCAGTGATTC---TA-ACATG--CAA-ATTGTCTTAAAATTT-CTGAT-G----ATAT--T-TGCCCATAC---GCCTGTGA--CAACCATACATGCTCAGCAAATTTC--ATCATCCTTtcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|11 : TC------ACTA-------GATA-GATCT---ATATG--TACA-----AA-ATATAAATACATAATATATG---GTAAATAA-----G------TTT-TTA--T-A-TTTTGTTTGA----------G---CC-G-AATT-----T--TATT----TGG-ACATGAGAAGTCGTTCATG--GCCGTAC--AGTGGCAAAATAGTGTTGCTAGTGAAaaacattaaa
gi|12 : cg------TTTGTTT--C-AATTTTGTTGGA----------G---C--A-TATA-----T--C--TGTTTTCG-ATGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACA-AACAGTGTTGTTAGGGAAAT-------AAGCAACAACGATACGTTTTGTTATGTGATTCG--------------t
gi|13 : gacaaatgtaaTCGACCAATTCC--GTCATCACTC------AGTATAAGAACGGTC-GCTCG---GTATG--TGCA-----AAGATATAAATGCATA---AATG---A-----ACAAATAC------TTTTTTT--C-A-TTTTGTTCGA----------ATCTC--AGTTTT-----T--T--T----TTT-ATATAAGAAGCCGTTTA
gi|14 : --TT---------------------TATTAA-----------------------TGACAAACATTT-TCGC-GAATTTT---------CATCGCCTGCCATTGATTTATAAC--ATCCGATAACGTCCGATACCTC------TCTTACATGTCAATAATATATATT-T---ATATATTATATATAAATc
gi|15 : taacacctagTACTCTGTCA--TATCCGTCATCATTC------AGTATTAGAACGGTT-TCTCG---ATCTT--TGCA-----AAGTTATAAA-----A---TATG---G-----AC-----CACTACATATTTTT--C-A-TTTTGTTGGA----------A---A--T-TATC-----T--T--T----TAT-ATATAAGAAGat
gi|16 : TAAACCGACATAACCAGTAAATAAAGATGTATAAAAAAATAAACAA---CATA--TC---------------------TATGAT-----------------------TGACAAACTTTT-TCTTTGAATTTG---------CATCGCCT----TTCGT-----G------A-ATAAC
gi|17 : tTATACTCGTCCAATTAT--GTCATCGTTC------ACTATTA----GAACAGCTAATAAATATT--TGCA-----AAGATATAAATGCATA---TATG---G-----AC-----
gi|19 : -------GGTC-GCTAG---ATATG--TACA-----AATATATAAATGTATA---TATG---G------C-----C------TTTTTTT--C-T-TTTTGTTGGT----------A---CCTA-AATT-----T--aaatatattttttcaagttg
gi|2 : ttagtatgaaaacTAAAGTGGCATAACTAGTATCTGAATATATTT-----------------C-TG--TT---------------------TATGAA-----------------------TGGAAAATATT-------GGATTCG---------CATTGCCT----TTGAT-----GC--ATTT-ATAACAACCGATACCTC------ACTTAAACGTTAATAA-----ATCGTATAGTATATTAAATCTATATTTACTGATCATTAATTA---TG-ATGTG--CAA-ATTAGCT---GCTCCGCTGAC-G----ATAT--T-TATAAT-AAC--ATTTCCTATTTAATTGGATATACTCGTCCAATTTT--GT------TG------GCCA-------GGTC-GCTAA---TTATG--TGCA-----AAGATATAAACGCATA---TATG---G-----AC-----T------TTTATTC--CCA-TTTTGCTGGA----------A---C--G-CATT-----T--C--T----TTG-ATATGAGAAGCGGCTTATGGAGCAATGT--AGGAATACAATAGTGTTGCTATGGAAATTAA-AAAAAGCAAT-AC-ATACTTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATAACATATTTGGCCGTTTTAATCTTAA-CTTTAACTTAACCACTTA--CTAAG-GTTTAATCGATGCTGACCGGAAATTTTCGAACAATTACGTT--T---A---TATCTAAAATCATACAT
gi|20 : -------GATC-GCTGA---ATACG--TGCA-----AAAAGTTTAATGCATA---AATG---G-----AC-----C------ATTATTT--C-T-TTTT
gi|22 : atcattcagtagtacaacGTC-GTTAG---ATATG--TGCA-----AAGACATAAATGCGTC---TATC---G-----AC-----ca
gi|23 : ca-GCTAG---ATACA--TGCA-----AAAATATAAATGCATA---TATG---G-----AC-----aaacatttcttttta
gi|3 : caTAAAGCGGCATAATCTGTATCTGAAGACATTC-----------------A-TT--TTACAAAAAAAAAAACACTTCCTTATGAA-----------------------TGAC-AACATTT-TCGA-GAATACC---------CATGAACT----TCGGT-----TC--ATTT-ATAAATGTCGATTTCTC------TTTTAAATGTAAACAA-----ATC-----GTGTTTTAGATATATA------GATCAGTAATTT---TA-ACATT--TAACAATAGCT---CCATCTCTGACGG----AAATTAT-CG-----AAAATATTTCTGATTTAATCGTGTATAGTCAGCCAaaatgtttat
gi|3 : aat------TTTGTTT--T-AATTTTATTGGA----------G---C--A-TATA-----T--C--TGTTTTCG-ATATGAGAAGCCGTTGAAGAAGCAAAGT---TGAACACAATAGTGTTGT-AGGGAAATAAGCAAAAAG-GATAATG------TTTCTCATGTGATTCG--------------A-GTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAAACAAGATCAGTCATAT-ATTT-TTA-GTTGAACTTAATCGCTTA--CTTGG-GTTTAGTTGATGATGCCCGGAAATTCTCTAATGTTTACGGATTC---A---AAACTGAGATTATATATtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|4 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaaAGAGTGGCATAACAAGTAATTGACTTTATTTTATAAAGCAATTAACACC-TTAATT---------------------T-TGAA-----------------------TGACAAACATAT-TCGT-GAATATG---------CATCGCCT----TCAGT-----GG--ATTT-ATCACAGCCAATACCTC------TATTACACGTGGATAA-----ATCGTGC-GTGTTTT-AATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT---GCTTCATTGAA-GGAAAATAT--TGTA-----AA---ATGTCCAATactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|6 : taaTAATGCGGCATAACCAGTGACTAAAAAGGTTG-----------------A--A--TT---------------------TA--AA-------------------------AGAAACATTT-T----GAAATCGTTATTTTTCCATCGCCT----TCTTT-----TG--ATTT-ATAACAGCATATAACTCGAAACATATTACACGTGgatatttgcgcatatgtttgtcggtacagtaaattgcattttaat
gi|7 : GTAT--ATC-TAA-CTTTAAATTAACTGCTTATCCT-GG--TTTAATCGAGAATGCTCGGAAATTTCCAAATATTTACG----G---ATCTAAACT-AGATCAGATATacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattccagtcgtta
gi|8 : aacataaaccataccaatatatacat-TA--TT---------------------GATGAT-----------------------TAACAAACATTTAGTG--AAATT-A---------CATCGCTT----TC--T-----GCAGATTA-ATAACAGCTGATACCTC------ATTTGCACGTGTTTAA-----ATC-----GTGTTTTAactaagtcatttatgttattctactcatcagaccatccttagaaaaatgt
gi|9 : tttaaagcgacatacataatcattaactaaagatgtgtgttttataaaaatatgagcaataATACACGGGCAATTCC--ATCATCCTTCTGAATAACTGAAT----GGTC-TCCAG---ATATG--TTAA-----AAGATATAAATGCAAA---TATG---G-----CCAAA--C------TTTGTT-------TTTTA-TGGACAAAGTTTTTA---T--A-TATTAGAAGT--T--T----TAT-ATATTAGAAGCCGTTAA-GGAGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 2222222222 1111 1111111111 111111 11111 22222 111 11 9999999999999999999999999999999999999999 1111111111 444444444444444 111 333333333333 111111 55555555555555555555555555555555 111111 11111 111 99999999999999999999999999999999999999999999999999 1 1 3333333 1 1 11 11 22222 6666666666666
lowQualScore : 2222 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 99999 4444444444 0000 66 4444444444 5 1 2 444444 1 0 44444 33333 8 1 444 8 11 8 5555555555555555555555555555555555555555 0 1 3 1 7777777777 1 777777777777777 3 1 000 1 666 666 99999 111111111111 5 333333 00000000000000000000000000000000 22 1 444 444444 99 0 99999 555 3 00000000000000000000000000000000000000000000000000 3 0 1 0 1111111 9 0 00 1 0 33 88888 1 0 0 2222222222222 7
lowQualScore : .... . ...................................................................................... .... ..... .......... .... .. .......... . . . ...... . . ..... ..... . . ... . .. . ........................................ . . . . .......... . ............... . . ... . ... ... ..... ............ . ...... ................................ .. . ... ...... .. . ..... ... . .................................................. . . . . ....... . . .. . . .. ..... . . . ............. .
lowQualScore : 1111 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6666 11111 5555555555 6666 88 1111111111 0 0 7 444444 0 2 33333 66666 9 0 000 0 00 0 4444444444444444444444444444444444444444 8 2 0 0 3333333333 4 444444444444444 6 3 000 6 444 444 11111 111111111111 7 444444 33333333333333333333333333333333 44 0 000 666666 00 8 22222 555 2 99999999999999999999999999999999999999999999999999 3 7 0 0 0000000 0 0 22 0 2 88 55555 0 2 2 2222222222222 0
consensus : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------C-TT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATATT--TG-----AA-A---TTTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
Reference ( family-1415 ) : TAAAGCGGCATA----ACCAGTANCTGAAGATATTT-----------------C-TN--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACG----ATATT--TG-----AA-A---TTTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCNTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
gi|1 : TAAAGCGGCATA----ACCAGTATCTGAAGATATTT-----------------C-TT--TT---------------------TTTAA-----------ACTTCGACAAAAACAACTTGTTCATGA----GAAACATTTTCGT-GAATTC-----------------T----CTGAT-----GCA--T-TAATAACGGCCTGTATCTC------TGATAAACGTGAATAT-----ATCGT---GT--TTTAAATTTAAATTTACTGATCAGTAAATC---TT-CTATG--CAA-ATTAGCT---------------------------------AA-A---TTTACGATTAAATCGTATATACTCGGCCAATTCCGCCATCTTTAGAT------ATTA-------G-------AAC-GGTTGC--ATACAT---AAGAT-TAAATGCATA---TATGCAAA-----AC-----TATA---TTTGTTTTCT-A-TTTTGTTGGA----------A---C---A-TAT---TTTA--TTTTGAATATGAGAAGCCGTTCATAGCGCAATGT--AGGGAAAT-GTAGTGTT-TTAGATAAATTAACCAAAA---ATAA------------GTCA-----------------------------TAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATT-ACATTTTT--CCGTATCAATC-TAAGTTTAAACTTAAGCACTTA--CT-AATATTTAATCGATGTTGTCCAGAAATTTCCGAACGTTTACG----CAAAA---TAACTAGGATTAT
gi|10 : TC------TCTTACACATACATAG-----ATCG------GTTTTAAATACAAATTTACCGATCAGTGATTC---TA-ACATG--CAA-ATTGTCTTAAAATTT-CTGATG----ATATT--TGCCCATAC-G---CCTGTGA--CAACCATACATGCTCAGCAAATTTCATCATCCTT---tcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|11 : T---C------ACTA-------G-------ATA-GATCT---ATATGTACAAA-ATATAAATACATAATATATG---GTAAATAA-----G------TTT-TTA--T-A-TTTTGTTTGA----------G---CCGAA-TTT---T-----ATTTGGACATGAGAAGTCGTTCATG--GCCGTAC--AGTGGCAAAATAGTGTTGCTAGTGAAaaacattaaa
gi|12 : cg------TTTGTTT--C-AATTTTGTTGGA----------G---C---A-TATATCTG----TTTTCGATGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACA-AACAGTGTTGTTAGGGAAAT-------AAGCAACAACGATACGTT-TTGTTATGTGATTCG---------------t
gi|13 : gacaaatgtaaTCGACCAATTCCGTCATCACT---C------AGTATAAGAACG-------GTC-GCTCG---GTATGTGCAAAGATATAAATGCATA---AATG---A-----ACAAATAC------TTTTTTT--C-A-TTTTGTTCGA----------ATCTC---AGTTT---T-----TTTTTTATATAAGAAGCCGTTTA
gi|14 : --TT---------------------TATTA-----------A-----------------------TGA----CAAACATTTTCGC-GAATTTT---------CATCGCCTGCCATTGATTTATAACA--TCCGATAACGTCCGATACCTC------TCTTACATGTCAATAATATATATT-T---ATATATTATATATAAATc
gi|15 : taacacctagTACTCTGTCATATCCGTCATCATT---C------AGTATTAGAACG-------GTT-TCTCG---ATCTTTGCAAAGTTATAAA-----A---TATG---G-----AC-----CACTACATATTTTT--C-A-TTTTGTTGGA----------A---A---T-TAT---C-----TTTTATATATAAGAAGat
gi|16 : TAAACCGACATA----ACCAGTAAATAAAGATGTATAAAAAAATAAACAA---CATA--TC---------------------TATGA-----------T-----------------------TGA----CAAACTTTTTCTTTGAATTTG---------CATCGCCT----TTCGT-----G-------AATAAC
gi|17 : tTATACTCGTCCAATTATGTCATCGTT---C------ACTATTA----G-------AACAGCTAATAAATATTTGCAAAGATATAAATGCATA---TATG---G-----AC-----
gi|19 : -------G-------GTC-GCTAG---ATATGTACAAATATATAAATGTATA---TATG---G------C-----C------TTTTTTT--C-T-TTTTGTTGGT----------A---C---C-TAaaatatattttttcaagttg
gi|2 : ttagtatgaaaacTAAAGTGGCATA----ACTAGTATCTGAATATATTT-----------------C-TG--TT---------------------TATGA-----------A-----------------------TGG----AAAATATT------GGATTCG---------CATTGCCT----TTGAT-----GCA--T-TTATAACAACCGATACCTC------ACTTAAACGTTAATAA-----ATCGTATAGTATATTAAATCTATATTTACTGATCATTAATTA---TG-ATGTG--CAA-ATTAGCT---GCTCCGCTGACG----ATATT--TATAAT-AACA---TTTCCTATTTAATTGGATATACTCGTCCAATT------TTGTT---G------GCCA-------G-------GTC-GCTAA---TTATGTGCAAAGATATAAACGCATA---TATG---G-----AC-----T------TTTATTC--CCA-TTTTGCTGGA----------A---C---G-CAT---T-----TCTTTGATATGAGAAGCGGCTTATGGAGCAATGT--AGGAATACAATAGTGTTGCTATGGAAATTAA-AAAAAGCAAT-AC-ATAC-TTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATA-ACATATTTGGCCGTTTTAATCTTAA-CTTTAACTTAACCACTTA--CTAAG-GTTTAATCGATGCTGACCGGAAATTTTCGAACAATTACGTT--T---A---TATCTAAAATCATACATaattt
gi|20 : ATCATT---C------AGTA-------GTACAACGATC-GCTGA---ATACGTGCAAAAAGTTTAATGCATA---AATG---G-----AC-----C------ATTATTT--C-T-TTTT
gi|22 : -------GTC-GTTAG---ATATGTGCAAAGACATAAATGCGTC---TATC---G-----AC-----ca
gi|23 : ca-GCTAG---ATACATGCAAAAATATAAATGCATA---TATG---G-----AC-----aaacatttcttttta
gi|3 : caTAAAGCGGCATA----ATCTGTATCTGAAGACATTC-----------------A-TT--TTACAAAAAAAAAAACACTTCCTTATGA-----------A-----------------------TGA----CAA-CATTTTCGA-GAATACC---------CATGAACT----TCGGT-----TCA--T-TTATAAATGTCGATTTCTC------TTTTAAATGTAAACAA-----ATCGT---GT--TTTAGATATATA------GATCAGTAATTT---TA-ACATT--TAACAATAGCT---CCATCTCTGACGG---AAATTATCG-----AA-AATATTTCTGATTTAATCGTGTATAGTCAGCCAaaatgtttat
gi|3 : aat------TTTGTTT--T-AATTTTATTGGA----------G---C---A-TATATCTG----TTTTCGATATGAGAAGCCGTTGAAGAAGCAAAGT---TGAACACAATAGTGTTGT-AGGGAAATAAGCAAAAAG-GATAATG------T-TTCTCATGTGATTCG---------------AGTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAA-ACAAGATCAGTCATAT-ATTT-TTA-GTTGAACTTAATCGCTTA--CTTGG-GTTTAGTTGATGATGCCCGGAAATTCTCTAATGTTTACGGATTC---A---AAACTGAGATTATATATtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|4 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaaAGAGTGGCATA----ACAAGTAATTGACTTTATTTTATAAAGCAATTAACACC-TTAATT---------------------T-TGA-----------A-----------------------TGA----CAAACATATTCGT-GAATATG---------CATCGCCT----TCAGT-----GGA--T-TTATCACAGCCAATACCTC------TATTACACGTGGATAA-----ATCGTGC-GTGTTTT-AATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT---GCTTCATTGAAGGAAAATATTG-TA-----AA-A---TGTCCAATactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|6 : taaTAATGCGGCATA----ACCAGTGACTAAAAAGGTTG-----------------A--A--TT---------------------TA--A-----------A-------------------------A----GAAACATTT---T-GAAATCGTTATTTTTCCATCGCCT----TCTTT-----TGA--T-TTATAACAGCATATAACTCGAAACATATTACACGTGAgatatttgcgcatatgtttgtcggtacagtaaattgcattttaat
gi|7 : AATATATACAT--------GTAT--ATC-TAA-CTTTAAATTAACTGCTTATCCT-GG--TTTAATCGAGAATGCTCGGAAATTTCCAAATATTTACG----G---ATCTAAACT-AGATCAGATATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattccagtcgtta
gi|8 : aacataaaccataccTAAAGCGACATACATAATCATTAACTAAAGATGTGT-----------------G-TT--TTATAAAAA--------------TATGAGCAATATATTGA-----------------------TGATTAACAAACATTT-AGT-GAAATTA---------CATCGCTT----TC--T-----GCAGAT-TAATAACAGCTGATACCTC------ATTTGCACGTGTTTAA-----ATC-----GTGTTTTAactaagtcatttatgttattctactcatcagaccatccttagaaaaatgt
gi|9 : ttATACACGGGCAATTCCATCATCCTT---CTGAATAACTGAAT----G-------GTC-TCCAG---ATATGTTAAAAGATATAAATGCAAA---TATG---G-----CCAAA--C------TTTGTT-------TTTTA-TGGACAAAGTTTTTA---T---A-TAT---TAGAAGTTTTATATATTAGAAGCCGTTAA-GGAGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 2222222222 1111 1111111111 111111 11111 33333 111 11 0000000000000000000000000000000000000000 1111111111 444444444444444 111 333333333333 1111111 55555555555555555555555555555555 111111 11111 111 99999999999999999999999999999999999999999999999999 1 1 3333333 1 1 11 11 22222 6666666666666
lowQualScore : 2222 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0000 99999 4444444444 0000 66 4444444444 5 1 2 444444 1 0 44444 44444 1 1 444 8 11 8 5555555555555555555555555555555555555555 0 1 3 5 7777777777 1 777777777777777 3 1 000 1 666 666 99999 111111111111 5 3333333 00000000000000000000000000000000 22 1 444 444444 99 0 99999 555 3 00000000000000000000000000000000000000000000000000 3 0 1 0 1111111 9 0 00 1 0 33 88888 1 0 0 2222222222222 7
lowQualScore : .... . ..................................................................................... .... ..... .......... .... .. .......... . . . ...... . . ..... ..... . . ... . .. . ........................................ . . . . .......... . ............... . . ... . ... ... ..... ............ . ....... ................................ .. . ... ...... .. . ..... ... . .................................................. . . . . ....... . . .. . . .. ..... . . . ............. .
lowQualScore : 1111 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6666 11111 5555555555 6666 88 1111111111 0 0 7 444444 0 2 33333 11111 7 0 000 0 00 0 4444444444444444444444444444444444444444 8 2 0 4 3333333333 4 444444444444444 6 3 000 6 444 444 11111 111111111111 7 4444444 33333333333333333333333333333333 44 0 000 666666 00 8 22222 555 2 99999999999999999999999999999999999999999999999999 3 7 0 0 0000000 0 0 22 0 2 88 55555 0 2 2 2222222222222 0
consensus : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--T-TG-----AA-A--ATTTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTT-T--CA-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
Reference ( family-1415 ) : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--T-TG-----AA----ATTTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTT-T--CA-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
gi|1 : TAAAGCGGCATA----ACCAGTATCTGAAGATATTT-----------------CTT--TT---------------------TTTAA-----------ACTTCGACAAAAACAACTTGTTCATGA----GAAACATTTTCGT-GAATTC-----------------T----CTGAT-----GCA--T-TAATAACGGCCTGTATCTC------TGATAAACGTGAATAT-----ATCGT---GT--TTTAAATTTAAATTTACTGATCAGTAAATC---TT-CTATG--CAA-ATTAGCT----------------------------------AA----ATTTACGATTAAATCGTATATACTCGGCCAATTCCGCCATCTTTAGAT------ATTA-------G-------AAC-GGTTGC--ATACAT---AAGAT-TAAATGCATA---TATGCAAA-----AC-----TATA---TTTGTT-TTCTA-TTTTGTTGGA----------A---C---A-TAT---TTTA--TTTTGAATATGAGAAGCCGTTCATAGCGCAATGT--AGGGAAAT-GTAGTGTT-TTAGATAAATTAACCAAAA---ATAA------------GTCA-----------------------------TAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATT-ACATTTTT--CCGTATCAATC-TAAGTTTAAACTTAAGCACTTA--CT-AATATTTAATCGATGTTGTCCAGAAATTTCCGAACGTTTACG----CAAAA---TAACTAGGATTAT
gi|10 : TC------TCTTACACATACATAG-----ATCG------GTTTTAAATACAAATTTACCGATCAGTGATTC---TA-ACATG--CAA-ATTGTCTTAAAATTT-CTGAT-G---ATAT--T-TGCCCATAC----GCCTGTGA--CAACCATACATGCTCAGCAAATTTCATCATCCTT---tcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|11 : T---C------ACTA-------G-------ATA-GATCT---ATATGTACAAA-ATATAAATACATAATATATG---GTAAATAA-----G------TTT-TT-A--TA-TTTTGTTTGA----------G---CCGAA-TTT---T-----ATTTGGACATGAGAAGTCGTTCATG--GCCGTAC--AGTGGCAAAATAGTGTTGCTAGTGAAaaacattaaa
gi|12 : cg------TTTGTT-T--CAATTTTGTTGGA----------G---C---A-TATATCTG----TTTTCGATGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACA-AACAGTGTTGTTAGGGAAAT-------AAGCAACAACGATACGTT-TTGTTATGTGATTCG---------------t
gi|13 : gacaaatgtaaTCGACCAATTCCGTCATCACT---C------AGTATAAGAACG-------GTC-GCTCG---GTATGTGCAAAGATATAAATGCATA---AATG---A-----ACAAATAC------TTTTTT-T--CA-TTTTGTTCGA----------ATCTC---AGTTT---T-----TTTTTTATATAAGAAGCCGTTTA
gi|14 : --TT---------------------TATTA-----------A-----------------------TGA----CAAACATTTTCGC-GAATTTT---------CATCGCCTGCCATTGATTTATAACA--TCCGATAACGTCCGATACCTC------TCTTACATGTCAATAATATATATT-T---ATATATTATATATAAATc
gi|15 : taacacctagTACTCTGTCATATCCGTCATCATT---C------AGTATTAGAACG-------GTT-TCTCG---ATCTTTGCAAAGTTATAAA-----A---TATG---G-----AC-----CACTACATATTTT-T--CA-TTTTGTTGGA----------A---A---T-TAT---C-----TTTTATATATAAGAAGat
gi|16 : TAAACCGACATA----ACCAGTAAATAAAGATGTATAAAAAAATAAACAA---CATA-TC---------------------TATGA-----------T-----------------------TGA----CAAACTTTTTCTTTGAATTTG---------CATCGCCT----TTCGT-----G-------AATAAC
gi|17 : tTATACTCGTCCAATTATGTCATCGTT---C------ACTATTA----G-------AACAGCTAATAAATATTTGCAAAGATATAAATGCATA---TATG---G-----AC-----
gi|19 : -------G-------GTC-GCTAG---ATATGTACAAATATATAAATGTATA---TATG---G------C-----C------TTTTTT-T--CT-TTTTGTTGGT----------A---C---C-TAaaatatattttttcaagttg
gi|2 : ttagtatgaaaacTAAAGTGGCATA----ACTAGTATCTGAATATATTT-----------------CTG--TT---------------------TATGA-----------A-----------------------TGG----AAAATATT------GGATTCG---------CATTGCCT----TTGAT-----GCA--T-TTATAACAACCGATACCTC------ACTTAAACGTTAATAA-----ATCGTATAGTATATTAAATCTATATTTACTGATCATTAATTA---TG-ATGTG--CAA-ATTAGCT---GCTCCGCTGAC-G---ATAT--T-TAT----AATAACATTTCCTATTTAATTGGATATACTCGTCCAATT------TTGTT---G------GCCA-------G-------GTC-GCTAA---TTATGTGCAAAGATATAAACGCATA---TATG---G-----AC-----T------TTTATTCC--CA-TTTTGCTGGA----------A---C---G-CAT---T-----TCTTTGATATGAGAAGCGGCTTATGGAGCAATGT--AGGAATACAATAGTGTTGCTATGGAAATTAA-AAAAAGCAAT-AC-ATAC-TTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATA-ACATATTTGGCCGTTTTAATCTTAA-CTTTAACTTAACCACTTA--CTAAG-GTTTAATCGATGCTGACCGGAAATTTTCGAACAATTACGTT--T---A---TATCTAAAATCATACATaattt
gi|20 : ATCATT---C------AGTA-------GTACAACGATC-GCTGA---ATACGTGCAAAAAGTTTAATGCATA---AATG---G-----AC-----C------ATTATT-T--CT-TTTT
gi|22 : -------GTC-GTTAG---ATATGTGCAAAGACATAAATGCGTC---TATC---G-----AC-----ca
gi|23 : ca-GCTAG---ATACATGCAAAAATATAAATGCATA---TATG---G-----AC-----aaacatttcttttta
gi|3 : caTAAAGCGGCATA----ATCTGTATCTGAAGACATTC-----------------ATT--TTACAAAAAAAAAAACACTTCCTTATGA-----------A-----------------------TGA----CAA-CATTTTCGA-GAATACC---------CATGAACT----TCGGT-----TCA--T-TTATAAATGTCGATTTCTC------TTTTAAATGTAAACAA-----ATC-----GTGTTTTAGATATATA------GATCAGTAATTT---TA-ACATT--TAACAATAGCT---CCATCTCTGACGG---AAATTAT-CG-----AAAAT-ATTTCTGATTTAATCGTGTATAGTCAGCCAaaatgtttat
gi|3 : aat------TTTGTT-T--TAATTTTATTGGA----------G---C---A-TATATCTG----TTTTCGATATGAGAAGCCGTTGAAGAAGCAAAGT---TGAACACAATAGTGTTGT-AGGGAAATAAGCAAAAAG-GATAATG------T-TTCTCATGTGATTCG---------------AGTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAA-ACAAGATCAGTCATAT-ATTT-TTA-GTTGAACTTAATCGCTTA--CTTGG-GTTTAGTTGATGATGCCCGGAAATTCTCTAATGTTTACGGATTC---A---AAACTGAGATTATATATtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|4 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaaAGAGTGGCATA----ACAAGTAATTGACTTTATTTTATAAAGCAATTAACACCTTAATT---------------------T-TGA-----------A-----------------------TGA----CAAACATATTCGT-GAATATG---------CATCGCCT----TCAGT-----GGA--T-TTATCACAGCCAATACCTC------TATTACACGTGGATAA-----ATCGTGC-GTGTTTT-AATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT---GCTTCATTGAAGGAAAATAT--TGTA-----AA----ATGTCCAATactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|6 : taaTAATGCGGCATA----ACCAGTGACTAAAAAGGTTG-----------------AAT--TT-------------------------A-----------A------------------------AA----GAAACATTT---T-GAAATCGTTATTTTTCCATCGCCT----TCTTT-----TGA--T-TTATAACAGCATATAACTCGAAACATATTACACGTGAgatatttgcgcatatgtttgtcggtacagtaaattgcattttaat
gi|7 : AATATATACAT--------GTAT--ATC-TAA-CTTTAAATTAACTGCTTATCCT-GG--TTTAATCGAGAATGCTCGGAAATTTCCAAATATTTACG----G---ATCTAAACT-AGATCAGATATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattccagtcgtta
gi|8 : aacataaaccataccTAAAGCGACATACATAATCATTAACTAAAGATGTGT-----------------GTT--TTATAAAAA--------------TATGAGCAATATATTGA-----------------------TGATTAACAAACATTT-AGT-GAAATTA---------CATCGCTT----TC--T-----GCAGAT-TAATAACAGCTGATACCTC------ATTTGCACGTGTTTAA-----ATC-----GTGTTTTAactaagtcatttatgttattctactcatcagaccatccttagaaaaatgt
gi|9 : ttATACACGGGCAATTCCATCATCCTT---CTGAATAACTGAAT----G-------GTC-TCCAG---ATATGTTAAAAGATATAAATGCAAA---TATG---G-----CCAAA--C------TTTGTT-------TTTTA-TGGACAAAGTTTTTA---T---A-TAT---TAGAAGTTTTATATATTAGAAGCCGTTAA-GGAGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 2222222222 1111 1111111111 111111 11111 33333 111 11 8888888888888888888888888888888888888 1111 1111111111 444444444444444 111 333333333333 111111 55555555555555555555555555555555 111111 11111 111 99999999999999999999999999999999999999999999999999 1 1 3333333 1 1 11 11 22222 6666666666666
lowQualScore : 2222 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0000 99999 4444444444 0000 66 4444444444 5 1 2 444444 1 0 44444 44444 1 1 444 8 11 8 3333333333333333333333333333333333333 7777 0 1 3 5 7777777777 1 777777777777777 3 1 000 1 666 666 99999 111111111111 5 555555 00000000000000000000000000000000 22 1 444 444444 99 0 99999 555 3 00000000000000000000000000000000000000000000000000 3 0 1 0 1111111 9 0 00 1 0 33 88888 1 0 0 2222222222222 7
lowQualScore : .... . ..................................................................................... .... ..... .......... .... .. .......... . . . ...... . . ..... ..... . . ... . .. . ..................................... .... . . . . .......... . ............... . . ... . ... ... ..... ............ . ...... ................................ .. . ... ...... .. . ..... ... . .................................................. . . . . ....... . . .. . . .. ..... . . . ............. .
lowQualScore : 1111 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6666 11111 5555555555 6666 88 1111111111 0 0 7 444444 0 2 33333 11111 7 0 000 0 00 0 2222222222222222222222222222222222222 0000 8 2 0 4 3333333333 4 444444444444444 6 3 000 6 444 444 11111 111111111111 7 999999 33333333333333333333333333333333 44 0 000 666666 00 8 22222 555 2 99999999999999999999999999999999999999999999999999 3 7 0 0 0000000 0 0 22 0 2 88 55555 0 2 2 2222222222222 0
consensus : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--TCG----AAA--AT----TTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
Reference ( family-1415 ) : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--TTG----AAA--AT----TTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
gi|1 : TAAAGCGGCATA----ACCAGTATCTGAAGATATTT-----------------CTT--TT---------------------TTTAA-----------ACTTCGACAAAAACAACTTGTTCATGA----GAAACATTTTCGT-GAATTC-----------------T----CTGAT-----GCA--T-TAATAACGGCCTGTATCTC------TGATAAACGTGAATAT-----ATCGT---GT--TTTAAATTTAAATTTACTGATCAGTAAATC---TT-CTATG--CAA-ATTAGCT---------------------------------AA--AT----TTACGATTAAATCGTATATACTCGGCCAATTCCGCCATCTTTAGAT------ATTA-------G-------AAC-GGTTGC--ATACAT---AAGAT-TAAATGCATA---TATGCAAA-----AC-----TATA---TTTGTTTTCT-A-TTTTGTTGGA----------A---C---A-TAT---TTTA--TTTTGAATATGAGAAGCCGTTCATAGCGCAATGT--AGGGAAAT-GTAGTGTT-TTAGATAAATTAACCAAAA---ATAA------------GTCA-----------------------------TAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATT-ACATTTTT--CCGTATCAATC-TAAGTTTAAACTTAAGCACTTA--CT-AATATTTAATCGATGTTGTCCAGAAATTTCCGAACGTTTACG----CAAAA---TAACTAGGATTAT
gi|10 : TC------TCTTACACATACATAG-----ATCG------GTTTTAAATACAAATTTACCGATCAGTGATTC---TA-ACATG--CAA-ATTGTCTTAAAATTT-CTGAT-G---ATAT--TTG----CCC--ATACGCCTGTGA--CAACCATACATGCTCAGCAAATTTCATCATCCTT---tcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|11 : T---C------ACTA-------G-------ATA-GATCT---ATATGTACAAA-ATATAAATACATAATATATG---GTAAATAA-----G------TTT-TTA--T-A-TTTTGTTTGA----------G---CCGAA-TTT---T-----ATTTGGACATGAGAAGTCGTTCATG--GCCGTAC--AGTGGCAAAATAGTGTTGCTAGTGAAaaacattaaa
gi|12 : cg------TTTGTTT--C-AATTTTGTTGGA----------G---C---A-TATATCTG----TTTTCGATGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACA-AACAGTGTTGTTAGGGAAAT-------AAGCAACAACGATACGTT-TTGTTATGTGATTCG---------------t
gi|13 : gacaaatgtaaTCGACCAATTCCGTCATCACT---C------AGTATAAGAACG-------GTC-GCTCG---GTATGTGCAAAGATATAAATGCATA---AATG---A-----ACAAATAC------TTTTTTT--C-A-TTTTGTTCGA----------ATCTC---AGTTT---T-----TTTTTTATATAAGAAGCCGTTTA
gi|14 : --TT---------------------TATTA-----------A-----------------------TGA----CAAACATTTTCGC-GAATTTT---------CATCGCCTGCCATTGATTTATAACA--TCCGATAACGTCCGATACCTC------TCTTACATGTCAATAATATATATT-T---ATATATTATATATAAATc
gi|15 : taacacctagTACTCTGTCATATCCGTCATCATT---C------AGTATTAGAACG-------GTT-TCTCG---ATCTTTGCAAAGTTATAAA-----A---TATG---G-----AC-----CACTACATATTTTT--C-A-TTTTGTTGGA----------A---A---T-TAT---C-----TTTTATATATAAGAAGat
gi|16 : TAAACCGACATA----ACCAGTAAATAAAGATGTATAAAAAAATAAACAA---CATA-TC---------------------TATGA-----------T-----------------------TGA----CAAACTTTTTCTTTGAATTTG---------CATCGCCT----TTCGT-----G-------AATAAC
gi|17 : tTATACTCGTCCAATTATGTCATCGTT---C------ACTATTA----G-------AACAGCTAATAAATATTTGCAAAGATATAAATGCATA---TATG---G-----AC-----
gi|19 : -------G-------GTC-GCTAG---ATATGTACAAATATATAAATGTATA---TATG---G------C-----C------TTTTTTT--C-T-TTTTGTTGGT----------A---C---C-TAaaatatattttttcaagttg
gi|2 : ttagtatgaaaacTAAAGTGGCATA----ACTAGTATCTGAATATATTT-----------------CTG--TT---------------------TATGA-----------A-----------------------TGG----AAAATATT------GGATTCG---------CATTGCCT----TTGAT-----GCA--T-TTATAACAACCGATACCTC------ACTTAAACGTTAATAA-----ATCGTATAGTATATTAAATCTATATTTACTGATCATTAATTA---TG-ATGTG--CAA-ATTAGCT---GCTCCGCTGACG----ATAT--TTATAATAAC--AT----TTCCTATTTAATTGGATATACTCGTCCAATT------TTGTT---G------GCCA-------G-------GTC-GCTAA---TTATGTGCAAAGATATAAACGCATA---TATG---G-----AC-----T------TTTATTC--CCA-TTTTGCTGGA----------A---C---G-CAT---T-----TCTTTGATATGAGAAGCGGCTTATGGAGCAATGT--AGGAATACAATAGTGTTGCTATGGAAATTAA-AAAAAGCAAT-AC-ATAC-TTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATA-ACATATTTGGCCGTTTTAATCTTAA-CTTTAACTTAACCACTTA--CTAAG-GTTTAATCGATGCTGACCGGAAATTTTCGAACAATTACGTT--T---A---TATCTAAAATCATACATaattt
gi|20 : ATCATT---C------AGTA-------GTACAACGATC-GCTGA---ATACGTGCAAAAAGTTTAATGCATA---AATG---G-----AC-----C------ATTATTT--C-T-TTTT
gi|22 : -------GTC-GTTAG---ATATGTGCAAAGACATAAATGCGTC---TATC---G-----AC-----ca
gi|23 : ca-GCTAG---ATACATGCAAAAATATAAATGCATA---TATG---G-----AC-----aaacatttcttttta
gi|3 : caTAAAGCGGCATA----ATCTGTATCTGAAGACATTC-----------------ATT--TTACAAAAAAAAAAACACTTCCTTATGA-----------A-----------------------TGA----CAA-CATTTTCGA-GAATACC---------CATGAACT----TCGGT-----TCA--T-TTATAAATGTCGATTTCTC------TTTTAAATGTAAACAA-----ATC-----GTGTTTTAGATATATA------GATCAGTAATTT---TA-ACATT--TAACAATAGCT---CCATCTCTGACGG---AAATTATCG----AAAATAT----TTCTGATTTAATCGTGTATAGTCAGCCAaaatgtttat
gi|3 : aat------TTTGTTT--T-AATTTTATTGGA----------G---C---A-TATATCTG----TTTTCGATATGAGAAGCCGTTGAAGAAGCAAAGT---TGAACACAATAGTGTTGT-AGGGAAATAAGCAAAAAG-GATAATG------T-TTCTCATGTGATTCG---------------AGTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAA-ACAAGATCAGTCATAT-ATTT-TTA-GTTGAACTTAATCGCTTA--CTTGG-GTTTAGTTGATGATGCCCGGAAATTCTCTAATGTTTACGGATTC---A---AAACTGAGATTATATATtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|4 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaaAGAGTGGCATA----ACAAGTAATTGACTTTATTTTATAAAGCAATTAACACCTTAATT---------------------T-TGA-----------A-----------------------TGA----CAAACATATTCGT-GAATATG---------CATCGCCT----TCAGT-----GGA--T-TTATCACAGCCAATACCTC------TATTACACGTGGATAA-----ATCGTGC-GTGTTTT-AATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT---GCTTCATTGAAGGAAAATAT--TGT----AAA--AT----GTCCAATactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|6 : taaTAATGCGGCATA----ACCAGTGACTAAAAAGGTTG-----------------AAT--TT-------------------------A-----------A------------------------AA----GAAACATTT---T-GAAATCGTTATTTTTCCATCGCCT----TCTTT-----TGA--T-TTATAACAGCATATAACTCGAAACATATTACACGTGAgatatttgcgcatatgtttgtcggtacagtaaattgcattttaat
gi|7 : AATATATACAT--------GTAT--ATC-TAA-CTTTAAATTAACTGCTTATCCT-GG--TTTAATCGAGAATGCTCGGAAATTTCCAAATATTTACG----G---ATCTAAACT-AGATCAGATATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattccagtcgtta
gi|8 : aacataaaccataccTAAAGCGACATACATAATCATTAACTAAAGATGTGT-----------------GTT--TTATAAAAA--------------TATGAGCAATATATTGA-----------------------TGATTAACAAACATTT-AGT-GAAATTA---------CATCGCTT----TC--T-----GCAGAT-TAATAACAGCTGATACCTC------ATTTGCACGTGTTTAA-----ATC-----GTGTTTTAactaagtcatttatgttattctactcatcagaccatccttagaaaaatgt
gi|9 : ttATACACGGGCAATTCCATCATCCTT---CTGAATAACTGAAT----G-------GTC-TCCAG---ATATGTTAAAAGATATAAATGCAAA---TATG---G-----CCAAA--C------TTTGTTT-------TTTAT-GGACAAAGTTTTTA---T---A-TAT---TAGAAGTTTTATATATTAGAAGCCGTTAA-GGAGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 2222222222 1111 1111111111 111111 11111 33333 111 11 8888888888888888888888888888888888888 1111 1111111111 444444444444444 111 333333333333 111111 55555555555555555555555555555555 111111 11111 111 99999999999999999999999999999999999999999999999999 1 1 3333333 1 1 11 11 22222 6666666666666
lowQualScore : 2222 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0000 99999 4444444444 0000 66 4444444444 5 1 2 444444 1 0 44444 44444 1 1 444 8 11 8 6666666666666666666666666666666666666 7777 0 1 3 5 7777777777 1 777777777777777 3 1 000 1 666 666 99999 111111111111 5 555555 00000000000000000000000000000000 22 1 444 444444 99 0 99999 555 3 00000000000000000000000000000000000000000000000000 3 0 1 0 1111111 9 0 00 1 0 33 88888 1 0 0 2222222222222 7
lowQualScore : .... . ..................................................................................... .... ..... .......... .... .. .......... . . . ...... . . ..... ..... . . ... . .. . ..................................... .... . . . . .......... . ............... . . ... . ... ... ..... ............ . ...... ................................ .. . ... ...... .. . ..... ... . .................................................. . . . . ....... . . .. . . .. ..... . . . ............. .
lowQualScore : 1111 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6666 11111 5555555555 6666 88 1111111111 0 0 7 444444 0 2 33333 11111 7 0 000 0 00 0 0000000000000000000000000000000000000 0000 8 2 0 4 3333333333 4 444444444444444 6 3 000 6 444 444 11111 111111111111 7 999999 33333333333333333333333333333333 44 0 000 666666 00 8 22222 555 2 99999999999999999999999999999999999999999999999999 3 7 0 0 0000000 0 0 22 0 2 88 55555 0 2 2 2222222222222 0
consensus : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--TCG----AAA--AT----TTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
Reference ( family-1415 ) : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--TCG----AAA--AT----TTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
gi|1 : TAAAGCGGCATA----ACCAGTATCTGAAGATATTT-----------------CTT--TT---------------------TTTAA-----------ACTTCGACAAAAACAACTTGTTCATGA----GAAACATTTTCGT-GAATTC-----------------T----CTGAT-----GCA--T-TAATAACGGCCTGTATCTC------TGATAAACGTGAATAT-----ATCGT---GT--TTTAAATTTAAATTTACTGATCAGTAAATC---TT-CTATG--CAA-ATTAGCT---------------------------------AA--AT----TTACGATTAAATCGTATATACTCGGCCAATTCCGCCATCTTTAGAT------ATTA-------G-------AAC-GGTTGC--ATACAT---AAGAT-TAAATGCATA---TATGCAAA-----AC-----TATA---TTTGTTTTCT-A-TTTTGTTGGA----------A---C---A-TAT---TTTA--TTTTGAATATGAGAAGCCGTTCATAGCGCAATGT--AGGGAAAT-GTAGTGTT-TTAGATAAATTAACCAAAA---ATAA------------GTCA-----------------------------TAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATT-ACATTTTT--CCGTATCAATC-TAAGTTTAAACTTAAGCACTTA--CT-AATATTTAATCGATGTTGTCCAGAAATTTCCGAACGTTTACG----CAAAA---TAACTAGGATTAT
gi|10 : TC------TCTTACACATACATAG-----ATCG------GTTTTAAATACAAATTTACCGATCAGTGATTC---TA-ACATG--CAA-ATTGTCTTAAAATTT-CTGAT-G---ATAT--TTG----CCC--ATACGCCTGTGA--CAACCATACATGCTCAGCAAATTTCATCATCCTT---tcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|11 : T---C------ACTA-------G-------ATA-GATCT---ATATGTACAAA-ATATAAATACATAATATATG---GTAAATAA-----G------TTT-TTA--T-A-TTTTGTTTGA----------G---CCGAA-TTT---T-----ATTTGGACATGAGAAGTCGTTCATG--GCCGTAC--AGTGGCAAAATAGTGTTGCTAGTGAAaaacattaaa
gi|12 : cg------TTTGTTT--C-AATTTTGTTGGA----------G---C---A-TATATCTG----TTTTCGATGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACA-AACAGTGTTGTTAGGGAAAT-------AAGCAACAACGATACGTT-TTGTTATGTGATTCG---------------t
gi|13 : gacaaatgtaaTCGACCAATTCCGTCATCACT---C------AGTATAAGAACG-------GTC-GCTCG---GTATGTGCAAAGATATAAATGCATA---AATG---A-----ACAAATAC------TTTTTTT--C-A-TTTTGTTCGA----------ATCTC---AGTTT---T-----TTTTTTATATAAGAAGCCGTTTA
gi|14 : --TT---------------------TATTA-----------A-----------------------TGA----CAAACATTTTCGC-GAATTTT---------CATCGCCTGCCATTGATTTATAACA--TCCGATAACGTCCGATACCTC------TCTTACATGTCAATAATATATATT-T---ATATATTATATATAAATc
gi|15 : taacacctagTACTCTGTCATATCCGTCATCATT---C------AGTATTAGAACG-------GTT-TCTCG---ATCTTTGCAAAGTTATAAA-----A---TATG---G-----AC-----CACTACATATTTTT--C-A-TTTTGTTGGA----------A---A---T-TAT---C-----TTTTATATATAAGAAGat
gi|16 : TAAACCGACATA----ACCAGTAAATAAAGATGTATAAAAAAATAAACAA---CATA-TC---------------------TATGA-----------T-----------------------TGA----CAAACTTTTTCTTTGAATTTG---------CATCGCCT----TTCGT-----G-------AATAAC
gi|17 : tTATACTCGTCCAATTATGTCATCGTT---C------ACTATTA----G-------AACAGCTAATAAATATTTGCAAAGATATAAATGCATA---TATG---G-----AC-----
gi|19 : -------G-------GTC-GCTAG---ATATGTACAAATATATAAATGTATA---TATG---G------C-----C------TTTTTTT--C-T-TTTTGTTGGT----------A---C---C-TAaaatatattttttcaagttg
gi|2 : ttagtatgaaaacTAAAGTGGCATA----ACTAGTATCTGAATATATTT-----------------CTG--TT---------------------TATGA-----------A-----------------------TGG----AAAATATT------GGATTCG---------CATTGCCT----TTGAT-----GCA--T-TTATAACAACCGATACCTC------ACTTAAACGTTAATAA-----ATCGTATAGTATATTAAATCTATATTTACTGATCATTAATTA---TG-ATGTG--CAA-ATTAGCT---GCTCCGCTGACG----ATAT--TTATAATAAC--AT----TTCCTATTTAATTGGATATACTCGTCCAATT------TTGTT---G------GCCA-------G-------GTC-GCTAA---TTATGTGCAAAGATATAAACGCATA---TATG---G-----AC-----T------TTTATTC--CCA-TTTTGCTGGA----------A---C---G-CAT---T-----TCTTTGATATGAGAAGCGGCTTATGGAGCAATGT--AGGAATACAATAGTGTTGCTATGGAAATTAA-AAAAAGCAAT-AC-ATAC-TTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATA-ACATATTTGGCCGTTTTAATCTTAA-CTTTAACTTAACCACTTA--CTAAG-GTTTAATCGATGCTGACCGGAAATTTTCGAACAATTACGTT--T---A---TATCTAAAATCATACATaattt
gi|20 : ATCATT---C------AGTA-------GTACAACGATC-GCTGA---ATACGTGCAAAAAGTTTAATGCATA---AATG---G-----AC-----C------ATTATTT--C-T-TTTT
gi|22 : -------GTC-GTTAG---ATATGTGCAAAGACATAAATGCGTC---TATC---G-----AC-----ca
gi|23 : ca-GCTAG---ATACATGCAAAAATATAAATGCATA---TATG---G-----AC-----aaacatttcttttta
gi|3 : caTAAAGCGGCATA----ATCTGTATCTGAAGACATTC-----------------ATT--TTACAAAAAAAAAAACACTTCCTTATGA-----------A-----------------------TGA----CAA-CATTTTCGA-GAATACC---------CATGAACT----TCGGT-----TCA--T-TTATAAATGTCGATTTCTC------TTTTAAATGTAAACAA-----ATC-----GTGTTTTAGATATATA------GATCAGTAATTT---TA-ACATT--TAACAATAGCT---CCATCTCTGACGG---AAATTATCG----AAAATAT----TTCTGATTTAATCGTGTATAGTCAGCCAaaatgtttat
gi|3 : aat------TTTGTTT--T-AATTTTATTGGA----------G---C---A-TATATCTG----TTTTCGATATGAGAAGCCGTTGAAGAAGCAAAGT---TGAACACAATAGTGTTGT-AGGGAAATAAGCAAAAAG-GATAATG------T-TTCTCATGTGATTCG---------------AGTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAA-ACAAGATCAGTCATAT-ATTT-TTA-GTTGAACTTAATCGCTTA--CTTGG-GTTTAGTTGATGATGCCCGGAAATTCTCTAATGTTTACGGATTC---A---AAACTGAGATTATATATtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|4 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaaAGAGTGGCATA----ACAAGTAATTGACTTTATTTTATAAAGCAATTAACACCTTAATT---------------------T-TGA-----------A-----------------------TGA----CAAACATATTCGT-GAATATG---------CATCGCCT----TCAGT-----GGA--T-TTATCACAGCCAATACCTC------TATTACACGTGGATAA-----ATCGTGC-GTGTTTT-AATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT---GCTTCATTGAAGGAAAATAT--TGT----AAA--AT----GTCCAATactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|6 : taaTAATGCGGCATA----ACCAGTGACTAAAAAGGTTG-----------------AAT--TT-------------------------A-----------A------------------------AA----GAAACATTT---T-GAAATCGTTATTTTTCCATCGCCT----TCTTT-----TGA--T-TTATAACAGCATATAACTCGAAACATATTACACGTGAgatatttgcgcatatgtttgtcggtacagtaaattgcattttaat
gi|7 : AATATATACAT--------GTAT--ATC-TAA-CTTTAAATTAACTGCTTATCCT-GG--TTTAATCGAGAATGCTCGGAAATTTCCAAATATTTACG----G---ATCTAAACT-AGATCAGATATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattccagtcgtta
gi|8 : aacataaaccataccTAAAGCGACATACATAATCATTAACTAAAGATGTGT-----------------GTT--TTATAAAAA--------------TATGAGCAATATATTGA-----------------------TGATTAACAAACATTT-AGT-GAAATTA---------CATCGCTT----TC--T-----GCAGAT-TAATAACAGCTGATACCTC------ATTTGCACGTGTTTAA-----ATC-----GTGTTTTAactaagtcatttatgttattctactcatcagaccatccttagaaaaatgt
gi|9 : ttATACACGGGCAATTCCATCATCCTT---CTGAATAACTGAAT----G-------GTC-TCCAG---ATATGTTAAAAGATATAAATGCAAA---TATG---G-----CCAAA--C------TTTGTTT-------TTTAT-GGACAAAGTTTTTA---T---A-TAT---TAGAAGTTTTATATATTAGAAGCCGTTAA-GGAGC
blockSeqs : CATA A ATTTTACAAAAAAAAAAACACTTCCTTATGAA TTAA TCTTT GTTATTTTTC GCCA GA TTATAACA C G G GAAACA C TATAT GTATA G A CGA T TA C CCATCTCTGACGGAAATTATCGAAAAT ACGC C T C CTGAATA C TAAGAACG A C TAA T ATA . TAAAT CACTACA G CAA CAAAGTTTTTATATATTAGAAG GG C TTA TTAAA AA AAGCA GCA A CATACTTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATG . G T ATTTGGC T T C T TC AAGG C GATTCAA A
blockSeqs : . T TATAAAGCAATTAACACCTTAATTTTGAA . TCGC T . CG GCAGA . A A . C . GTGC A A . . . . GCTCCGCTGACGATATTTATAATAAC . T C A C G TTAGAACG . C . T . . . AAATAC T CCA GCATATATCTG CG G TGG AGTG CA TAAA GCA A TGTTTCTCATGTGATTCGAGTC . T . GATCAGT . . G G . TGGG A GATCTA G
blockSeqs : . T GTTTTATAAAAATATGAGCAATATATTGA . TCGA G . GA GCA . T T . C . G A T . . . . GCTTCATTGAAGGAAAATATTGTAAA . T C A C G GTACAACG . C . T . . . AAAC T TAA ATCTCAGTTTT TT T AGA AGGA CA . GG . . . . . C T . GG A TTTAT .
blockSeqs : . A AAAAAAATAAACAACATATCTATGAT . TCGT G . GG TCA . T A . T . T G T . . . . TAAAATTTCTGATGATATTTGCCC . A G C C TTAG . A . T . . . G T TA GCATATATCTG AT T TG TGA A
blockSeqs : . A CTGTTTATGAA . AGT C . AG GGA . T A . A . . G T C G C C AATG . A . T . . . C A CA GCCGAATTTT TG G GG
blockSeqs : . A AATTTAA . T G . TT TGA . T A . A . . G . A G G G . A . T . . . T A CA AATTATC CG A
blockSeqs : . . A . . G . A . T C C C G . G . C . . . C G CT ACGCATT AT
blockSeqs : G . A . T . . . G CT
blockSeqs : . A . C . . . . .
blockSeqs : . A . T . . .
blockSeqCons : G********* GT*** GCTTCGCTGACGATATTTATCAAAC************ C********* *** *** C*********** CA**** GCATATATCT********************** CA
originalCons : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT---GCTTC-CTGACGG---ATAT--TCG----AAA--AT----TTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTT--C-A-TTTTGTTGGA----------A---C---A-TAT---T-----TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
finalCons : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCTGCTTCGCTGACGATATTTATCAAAC------------AT----TTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTTC---------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----ACC-----------TTTGTTTCA----TTTTGTTGGAGCATATATCT----------------------TTTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 2222222222 1111 1111111111 111111 11111 33333 111 11 4444444444444444444444444444444 1111111111 444444444444444 111 333333333333 1111 33333333333333333333333333 111111 11111 111 99999999999999999999999999999999999999999999999999 1 1 3333333 1 1 11 11 22222 6666666666666
lowQualScore : 2222 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0000 99999 4444444444 0000 66 4444444444 5 1 2 444444 1 0 44444 44444 1 1 444 8 11 8 8888888888888888888888888888888 6 2 3 1 3 5 7777777777 1 777777777777777 3 1 000 1 666 666 99999 111111111111 5 6666 77777777777777777777777777 5 44 1 444 444444 99 0 99999 555 3 00000000000000000000000000000000000000000000000000 3 0 1 0 1111111 9 0 00 1 0 33 88888 1 0 0 2222222222222 7
lowQualScore : .... . ..................................................................................... .... ..... .......... .... .. .......... . . . ...... . . ..... ..... . . ... . .. . ............................... . . . . . . .......... . ............... . . ... . ... ... ..... ............ . .... .......................... . .. . ... ...... .. . ..... ... . .................................................. . . . . ....... . . .. . . .. ..... . . . ............. .
lowQualScore : 1111 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6666 11111 5555555555 6666 88 1111111111 0 0 7 444444 0 2 33333 11111 7 0 000 0 00 0 2222222222222222222222222222222 5 5 2 2 0 4 3333333333 4 444444444444444 6 3 000 6 444 444 11111 111111111111 7 1111 44444444444444444444444444 0 11 0 000 666666 00 8 22222 555 2 99999999999999999999999999999999999999999999999999 3 7 0 0 0000000 0 0 22 0 2 88 55555 0 2 2 2222222222222 0
consensus : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT----GCTTC-CTGACGATATTTATC--A-A-ACATTTNCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTTC--A-TTTTGTTGGAGCA-------TAT-A--TCT------T-TTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
Reference ( family-1415 ) : TAAAGCGGCATA----ACCAGTANCTGAAGATGTTT-----------------CTT--TT---------------------TATGA-----------A-----------------------TGA----CAAACATTTTCGT-GAATTCG---------CATCGCCT----TCGGT-----GCA--T-TNATAACGGCCGATACCTC------TNTTACACGTGAATAA-----ATCGT---GTGTTTTAAATATANATTTACTGATCAGTAATTC---TA-ACATG--CAA-ATTAGCT----GCTTCGCTGACGATATTTATC--A-A-ACATTTCCGATTTAATCGTATATACTCGGCCAATTCCGTCATCGTT---C------ACTA-------G-------GTC-GCTAG---ATACGTGCAAAGATATAAATGCATA---TATG---G-----AC-----C------TTTGTTTC--A-TTTTGTTGGAGCA-------TAT-A--TCT------T-TTTNGATATGAGAAGCCGTTNATGGAGCAATGT--AGGGACACAATAGTGTTGTTAGGGAAATTAACAAAAAGCGATAACGATAC-TT-TTGTCACGTGATTCG---------------AGTC-TAAT-CA-TAGATATGACCGCTNCGTTATGTAGGAATATA-ACATNTTCGGCCGTATCAATC-TAA-CTTNAACTTAACCGCTTA--CT-GG-GTTTAATCGATGNTGCCCGGAAATTTCCGAACGTTTACG----C---A---NAACTAAGATCATATAT
gi|1 : TAAAGCGGCATA----ACCAGTATCTGAAGATATTT-----------------CTT--TT---------------------TTTAA-----------ACTTCGACAAAAACAACTTGTTCATGA----GAAACATTTTCGT-GAATTC-----------------T----CTGAT-----GCA--T-TAATAACGGCCTGTATCTC------TGATAAACGTGAATAT-----ATCGT---GT--TTTAAATTTAAATTTACTGATCAGTAAATC---TT-CTATG--CAA-ATTAGCT-----------------------------A-A-ATTTACGATTAAATCGTATATACTCGGCCAATTCCGCCATCTTTAGAT------ATTA-------G-------AAC-GGTTGC--ATACAT---AAGAT-TAAATGCATA---TATGCAAA-----AC-----TATA---TTTGTTTTCTA-TTTTGTTGGAACA-------TAT-T--TTA------T-TTTGAATATGAGAAGCCGTTCATAGCGCAATGT--AGGGAAAT-GTAGTGTT-TTAGATAAATTAACCAAAA---ATAA------------GTCA-----------------------------TAAT-CAGTAGATATGACCGCTATGTTAAGTAGGAACATT-ACATTTTT--CCGTATCAATC-TAAGTTTAAACTTAAGCACTTA--CT-AATATTTAATCGATGTTGTCCAGAAATTTCCGAACGTTTACG----CAAAA---TAACTAGGATTAT
gi|10 : TC------TCTTACACATACATAG-----ATCG------GTTTTAAATACAAATTTACCGATCAGTGATTC---TA-ACATG--CAA-ATTGTCTTAAAATTT--CTGATGATATTTGCC--C-ATACGCCTGTGA--CAACCATACATGCTCAGCAAATTTCATCATCCTT---tcatactaaatcgtttacgttattccatgggttagatctatttcaaatatcggcgatgaaagccagcttaaattaatgttttgacgataaacaacggtattttgcaccagctt
gi|11 : T---C------ACTA-------G-------ATA-GATCT---ATATGTACAAA-ATATAAATACATAATATATG---GTAAATAA-----G------TTT-TTAT--A-TTTTGTTTGAGCC-------GA--A--TTT------TATTTGGACATGAGAAGTCGTTCATG--GCCGTAC--AGTGGCAAAATAGTGTTGCTAGTGAAaaacattaaa
gi|12 : cg------TTTGTTTC--AATTTTGTTGGAGCA-------TAT-A--TCTG-----T-TTTCGATGTGAGAAGATGTTGATTAAGCAATGTTTAAA-ACA-AACAGTGTTGTTAGGGAAAT-------AAGCAACAACGATACGTT-TTGTTATGTGATTCG---------------t
gi|13 : gacaaatgtaaTCGACCAATTCCGTCATCACT---C------AGTATAAGAACG-------GTC-GCTCG---GTATGTGCAAAGATATAAATGCATA---AATG---A-----ACAAATAC------TTTTTTTC--A-TTTTGTTCGA--A-------TCTCAGTTTT------T-TTTTTATATAAGAAGCCGTTTA
gi|14 : --TT---------------------TATTA-----------A-----------------------TGA----CAAACATTTTCGC-GAATTTT---------CATCGCCTGCCATTGATTTATAACA--TCCGATAACGTCCGATACCTC------TCTTACATGTCAATAATATATATT-T---ATATATTATATATAAATc
gi|15 : taacacctagTACTCTGTCATATCCGTCATCATT---C------AGTATTAGAACG-------GTT-TCTCG---ATCTTTGCAAAGTTATAAA-----A---TATG---G-----AC-----CACTACATATTTTTC--A-TTTTGTTGGAA-A-------T-T-A--TC-------T-TTTATATATAAGAAGat
gi|16 : TAAACCGACATA----ACCAGTAAATAAAGATGTATAAAAAAATAAACAA---CATA-TC---------------------TATGA-----------T-----------------------TGA----CAAACTTTTTCTTTGAATTTG---------CATCGCCT----TTCGT-----G-------AATAAC
gi|17 : tTATACTCGTCCAATTATGTCATCGTT---C------ACTATTA----G-------AACAGCTAATAAATATTTGCAAAGATATAAATGCATA---TATG---G-----AC-----
gi|19 : -------G-------GTC-GCTAG---ATATGTACAAATATATAAATGTATA---TATG---G------C-----C------TTTTTTTC--T-TTTTGTTGGaaatatattttttcaagttg
gi|2 : ttagtatgaaaacTAAAGTGGCATA----ACTAGTATCTGAATATATTT-----------------CTG--TT---------------------TATGA-----------A-----------------------TGG----AAAATATT------GGATTCG---------CATTGCCT----TTGAT-----GCA--T-TTATAACAACCGATACCTC------ACTTAAACGTTAATAA-----ATCGTATAGTATATTAAATCTATATTTACTGATCATTAATTA---TG-ATGTG--CAA-ATTAGCT----GCTCCGCTGACGATATTTATA--ATA-ACATTTCCTATTTAATTGGATATACTCGTCCAATT------TTGTT---G------GCCA-------G-------GTC-GCTAA---TTATGTGCAAAGATATAAACGCATA---TATG---G-----AC-----T------TTTATTCCC-A-TTTTGCTGGAACG-------CAT-T--TCT------T-T---GATATGAGAAGCGGCTTATGGAGCAATGT--AGGAATACAATAGTGTTGCTATGGAAATTAA-AAAAAGCAAT-AC-ATAC-TTCTTGTCACGTGATTCGAACCCGGAACGCCCAAGTCATAATGCA-TATATATGACTACTGCGTTATGTAGGAATATA-ACATATTTGGCCGTTTTAATCTTAA-CTTTAACTTAACCACTTA--CTAAG-GTTTAATCGATGCTGACCGGAAATTTTCGAACAATTACGTT--T---A---TATCTAAAATCATACATtacctaaattt
gi|20 : ATCATT---C------AGTA-------GTACAACGATC-GCTGA---ATACGTGCAAAAAGTTTAATGCATA---AATG---G-----AC-----C------ATTATTTC--T-TTTT
gi|22 : -------GTC-GTTAG---ATATGTGCAAAGACATAAATGCGTC---TATC---G-----AC-----ca
gi|23 : ca-GCTAG---ATACATGCAAAAATATAAATGCATA---TATG---G-----AC-----aaacatttcttttta
gi|3 : caTAAAGCGGCATA----ATCTGTATCTGAAGACATTC-----------------ATT--TTACAAAAAAAAAAACACTTCCTTATGA-----------A-----------------------TGA----CAA-CATTTTCGA-GAATACC---------CATGAACT----TCGGT-----TCA--T-TTATAAATGTCGATTTCTC------TTTTAAATGTAAACAA-----ATC-----GTGTTTTAGATATATA------GATCAGTAATTT---TA-ACATT--TAACAATAGCT----CCATCTCTGACGGAAATTATCGAA-A-ATATTTCTGATTTAATCGTGTATAGTCAGCCAaaatgtttat
gi|3 : aat------TTTGTTTT--AATTTTATTGGAGCA-------TAT-A--TCTG-----T-TTTCGATATGAGAAGCCGTTGAAGAAGCAAAGT---TGAACACAATAGTGTTGT-AGGGAAATAAGCAAAAAG-GATAATG------T-TTCTCATGTGATTCG---------------AGTC------CA-TGGATAAAACCACTTCTCTATTTAAGCATAAA-ACAAGATCAGTCATAT-ATTT-TTA-GTTGAACTTAATCGCTTA--CTTGG-GTTTAGTTGATGATGCCCGGAAATTCTCTAATGTTTACGGATTC---A---AAACTGAGATTATATATtgacaaatgtaatttgttttaattttattggagcatatatctgttttcgatatgagaagccgttgaagaagcaaagttgaacacaatagtgttgtagggaaataagcaaaaaggataatgtttctcatgtgattcgagtccatggataaaaccacttctctatttaagcataaaacaagatcagtcatatatttttagttgaacttaatcgcttacttgggtttagttgatgatgcccggaaattctctaatgtttacggattcaaaactgagattatatatactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|4 : aattaaagcggcataatctgtatctgaagacattcattttacaaaaaaaaaaacacttccttatgaatgacaacattttcgagaatacccatgaacttcggttcatttataaatgtcgatttctcttttaaatgtaaacaaatcgtgttttagatatatagatcagtaattttaacatttaacaatagctccatctctgacggaaattatcgaaaatatttctgatttaatcgtgtatagtcagccatgacaaatgtaaAGAGTGGCATA----ACAAGTAATTGACTTTATTTTATAAAGCAATTAACACCTTAATT---------------------T-TGA-----------A-----------------------TGA----CAAACATATTCGT-GAATATG---------CATCGCCT----TCAGT-----GGA--T-TTATCACAGCCAATACCTC------TATTACACGTGGATAA-----ATCGTGC-GTGTTTT-AATAAATATTCACTGATTAGTAATTCCGATATACATGTATAA-ATTAGCT----GCTTCATTGAactaaatcatatacgttatctcatgggtcacgtcttaaaaaatatc
gi|6 : taaTAATGCGGCATA----ACCAGTGACTAAAAAGGTTG-----------------AAT--TT-------------------------A-----------A------------------------AA----GAAACATTT---T-GAAATCGTTATTTTTCCATCGCCT----TCTTT-----TGA--T-TTATAACAGCATATAACTCGAAACATATTACACGTGAaggaaaatattgtaaaatgtccaatgatatttgcgcatatgtttgtcggtacagtaaattgcattttaat
gi|7 : AATATATACAT--------GTAT--ATC-TAA-CTTTAAATTAACTGCTTATCCT-GG--TTTAATCGAGAATGCTCGGAAATTTCCAAATATTTACG----G---ATCTAAACT-AGATCAGATATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattccagtcgtta
gi|8 : aacataaaccataccTAAAGCGACATACATAATCATTAACTAAAGATGTGT-----------------GTT--TTATAAAAA--------------TATGAGCAATATATTGA-----------------------TGATTAACAAACATTT-AGT-GAAATTA---------CATCGCTT----TC--T-----GCAGAT-TAATAACAGCTGATACCTC------ATTTGCACGTGTTTAA-----ATC-----GTGTTTTAactaagtcatttatgttattctactcatcagaccatccttagaaaaatgt
gi|9 : ttATACACGGGCAATTCCATCATCCTT---CTGAATAACTGAAT----G-------GTC-TCCAG---ATATGTTAAAAGATATAAATGCAAA---TATG---G-----CCAAA--C------TTTGTT------TTTTA-TGGA-CAAAGTTTTTAT-A--TATTAGAAGT-TTTATATATTAGAAGCCGTTAA-GGAGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TTGAACCCAGATCACTTGTGCAACAATCCACAGCTCTGTCCACTGTACTATATCTAAGGAATATTTATTTGGTCGAAAGATTTAATTATGTTTATAAAACTATGTTCATATTGCATTTTTAACAAATGATACCCAGACATTTCTGAACATTTACAGATGTAGCCGAGATGAGACAGGCTTAACTATTGATGTTATTATTTGGGTCGGGTCTAATTCAAATATAGGCGATAAGAGCAATTTTAAATGTATTTTTT
Unaligned ( gi|18 ): CCAGTTTCGTCATCCTTCAGTACGAAAACAATGGTTTGATATTATTGCATTCAATGATATGAATGCATATTATATGAACACAT
Unaligned ( gi|21 ): TTAAAACTAGATCACCTGAGTAACGATCCGCAGCTACATCCACTGTACTGCATAAGAATAT
Unaligned ( gi|24 ): AATTACGGGATTTTAACTCGGGTCGACTGGACGATAATCCACAAATA