lowQualScore : 1111111 1 1111111 111 11111 1111 11 22222222222222222222222 3333 1111 1111 22222 1 111111 2222222222 111 5555 222 33333333 333333333333 22222 1111 55555555555 99999999999999999999999999999999999999999999999999999999 11 11111 11 1 1 666666666666 1111111 1 1111111 11 3333333333333 11111 11 1 111 22222 2 1 1 1 33 11 5555 11 1 666666666666 11 1 1 22 22 1 22 99999999999 111 111 1 1 11 4 4444
lowQualScore : 777 777 4 4444444 1 2 5 4444444 222 666 3 666 2 33333 7 1 7777 55 3 33 2 55555555555555555555555 0000 6 1 5 6 6666 4444 1 1 11111 3 22 4 666666 77 9999999999 0 66 5 0 0 99 77 0 5 222 1 3 5555 9 444 0 55555555 6666 0 444444444444 0 11111 8 8888 5 11111111111 6 1 88888888888888888888888888888888888888888888888888888888 6 11 7 6 66666 1 88 1 1 3 2 1 0 99 6 1 777777777777 7777777 5 0 1 4 777 2 777 777 44 3333333 1 77 777 0000000000000 2 55 33333 3 66 33 88 66 3 3 0 3 333 6 3 77777 0 5 7 6 5 22 6 6 22 6 6 8888 6 22 5 444444444444 22 5 7 33 11 6 5 6 6 33 55555555555 777 3 666 5 6 5 66 22 6 4 0 4 6 0000
lowQualScore : ... ... . ....... . . . ....... ... ... . ... . ..... . . .... .. . .. . ....................... .... . . . . .... .... . . ..... . .. . ...... .. .......... . .. . . . .. .. . . ... . . .... . ... . ........ .... . ............ . ..... . .... . ........... . . ........................................................ . .. . . ..... . .. . . . . . . .. . . ............ ....... . . . . ... . ... ... .. ....... . .. ... ............. . .. ..... . .. .. .. .. . . . . ... . . ..... . . . . . .. . . .. . . .... . .. . ............ .. . . .. .. . . . . .. ........... ... . ... . . . .. .. . . . . . ....
lowQualScore : 888 888 4 4444444 1 4 5 6666666 777 444 6 444 8 22222 6 5 0000 55 0 88 2 33333333333333333333333 0000 3 0 7 0 8888 2222 0 7 88888 8 22 6 444444 99 9999999999 1 99 0 1 2 99 99 3 7 555 0 2 6666 0 888 8 44444444 4444 8 000000000000 8 66666 0 4444 0 00000000000 7 0 55555555555555555555555555555555555555555555555555555555 7 88 5 7 77777 0 22 0 4 0 8 4 8 22 7 4 777777777777 1111111 7 3 0 6 000 5 000 000 77 0000000 1 33 000 8888888888888 5 00 66666 6 55 22 66 66 6 6 7 3 777 7 7 77777 0 0 0 0 0 00 0 0 00 0 0 0000 0 00 0 000000000000 00 0 0 00 00 0 0 0 0 00 00000000000 000 0 000 0 0 0 55 00 0 0 0 0 0 0000
consensus : TTTCTAATTCGCTTTGC---TCA---AACG-AA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAG-GG----AATAA---A---A-GAG---AACAANACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTATAACATANT--T--TTACAGT-NAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGATCTGCAACAGC--TG----ATACCATGGNN--TTTTTATTCGCATGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATA--TATATACAAACT--CAAATA-AATTACAACCTTATTAAA--AATGAC-CAACA--TCTGACAGAAAGT---TGTATATACN-ATTTCAAATATAATNACTT-ATAACCACAATATCTACCTCATT--ACTGT-N--TATACAGTTTA--AANTACC-ACATN---AACACC------GTGTGTTTCTTTTT-TGTACT-----T-GA----CT-TTGA----------G----T--------GGGT--GNG--TG-GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGA-CCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGG--CTCGTGCTCTATACCCTTGACTGAACAT-T--TACACG-TATACGTATTCATTTGCTTTAAACC------TATA-ATAAATACATTTATTTTCTAATT---CGCTTTGC---TCA---AACG-AA-------AATAAATCATTTATTTTCTTTTCAA---AGTAAACTC-AG-G-----GANTTAAAG--AG----AACA-A-NACATGGTATAGGA--ATTGTCA-CTT-GCAT-TGCCGTTATAACATCGA-ACACACACAAAGAAAGGNCAA-CNG-TGCTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTNNNNNNTTCGTACCAAACGTTCTCAGACGCCAGTTTGTGCCAANATGANTNCGTACTGTTTGATATACGATAGNNAATGGCATACATTTCNGTCAAACAGGTANCATTTACACTCATGTAATAGCAATTTATAT
Reference ( gi|1 ) : TTTCTAATTCGCTTTGC---TCA---AACG-AA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAG-GG----AATAA---A---A-GAG---AACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTATAACATAGT--T--TTACAGT-CAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGATCCGCAACATC--TG----ATATCATGGTT--TTTTTATTCGCATGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATA--TATATACAAACT--CAAATA-AATTACAACCTTATCAAA--AATGAC-CAACG--TCTGACAGAAAGTACATGTATATACC-ATTTTAAATATAATAATTTCATAACCACAATATCTACCTCAT---ATTGT-T--TATACAGTTTA--AAATACC-ACATA---AACCTC------GTGTGTTTTTTTTT-TGTACT-----T-AA----CT-TTGA----------G----T--------GAGT--GTG--TG-GGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGA-ACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGA--CTCGTGCTCAATACCCTTGACTGACCATTT--TA-ACG-TATATGTATTCATTTGCTTTAAACC------TATA-ATAAATACATTTATTTTCTTATT---CGCTTTGC---TCA---AACG-AA-------AATAAATCATTTATGTTCTTTTCAA---AGTAAACTC-GG-G-----AAATTAAAG--AC----AACA-A-GACATGGTATAGGA--ATTGTCA-ATT-GCAT-TGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGATGC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTCAG-----------TGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATATTA
gi|3 : TTTCTAATTCGCTATGC---TCA---AACG-AA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAG-GG----ACTTA---A---A-GGG---AACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTATAACATATT--T--TTACAGT-AAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAGCTGCAACAGC--TG----ATACCATGGGA--TTTT-ATTTGCATGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTA--TA----CAAACT--CAAATA-AATAACAACCTCATTAAA--A-TGAC-CAACA--TCTGACAGAAAGTA------TATAC---TTTCAAATATAATTACACAATAACCACACTATCTACTTCAT---ACTGTATAATATACAGTTTA--ACATACC-ACATG---CACACC------AAGT-TGTCTTTTT-TGTACTGCTCTT-GGACCGCTGTTGG----------G----T--------GGGG--GT---TG-GGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGA-CCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAA--CTCGTACTCTATACCCTTGACTGGACAT-----------TACACGTATTCGTTTACTTTAAACC------AACA-ATAAATACATT
gi|5 : tgtTTTCTAATACGCTTTGC---TCA---AACG-AA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAG-G--------AC---A---A-GAG---AACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTATAACATA-T--T--TTACAGT-AAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGATCTGCAACAGC--TT----TTACCATGGAC--GTTTTATTTGCATAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATA--TATCTAC----T--GAAATA-AATTACAGTCTTATTAGA--AAGGTC-CATCA--TCTGACAGAAAGT----GTATACAAA-CTTTCAAATATAATTACTTCATAACCACAATATCGATATCATTTGACTGT-A--TATACAGTTTT--AATTACC-ACATA---AACACC------GTGT-TTTCTTCTT-TGTTCT-----C-TA----CT-TTGA----------C----A--------TAGTTTGGG--TG-GGA-----TGGGGGA-TCATAT-----GAAAACAACGTAACTATTCGGCAAATGCAATGT-CCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAG--CTCTTGCTCTTTACCCTTGACTGAACA--T--TACACG-TATATGT
gi|2 : tatTTTCTAATTCGCTTTGC---TCA---AACG-AA-------AAT-----ATTTGTTTTCCTTTTAAA-AAAAATCGT-GG----AATAG---A---A-AAG---AACAATACATGGTGTGCG---ATTGTCACTTACATTGCCGTTATAATAT
gi|9 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatatTTTCTAATTCGCTTTGC---TCA---AACA-AA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAA-TGTT--AATGAGTTA---ATGAG---AACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTATAACATAGT--T--T-ACAGT-AAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAATCTGCAACACC--TG----ATACCCTGGAG--GTTTTATTCACACGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA---A---ACAAACT--CATATA-AATTACAACCTTAcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|14 : tatTTTCTAATTCGCTTTGCATTTCATTTATC---ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAG-GG----ATTTA---A---A-GAG---AACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTATAATAT-TT--T--TCACAAT-AAAGATGCACAAAACGATCTATCA---------AA------------CAT
gi|7 : tatTTTCTAATTAGCTTT-C---TCA---AACG-AA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAA-AG----AGTAA---A---A-GAC---TACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGTAACATA----T--TTACA-T-TAA-ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCATAT---GTAGAATAA-CTGTAACAGCATTGTATTATAT-ACAATT--TTCTCAT---AGTGAA--ATTCCTGTTCTTGAACAGTT------ACAGTTCTCAATA---A---ACAAACT--C--TTA----TATAATATTATTAGAATAAAGACTCAACAACTCAAACAGAAA
gi|10 : tatTTTCTAATTCGCCTTGC---TTA---AAAGTAA-------CATAAATCA-TCA---TCTTGTTAA--TACAGTCAGTTC----AATAACTTA---A-G-GTTTCACTAGATACGGTATAGCA--GT--TCACTTGCATTGCC-----------GT--T--TTATAAT-TGAGACAAACAAAtttatactctaaaattcatctagaagagctaacttctaaaacca
gi|11 : taactatcatgtaatacagactgttcgcgtgcaccaaaccatttactatacaatacacatacacatatactttaaacgtataatgagtgcatttatTTTATCACTCTCTTTGC---TTA---AACA-AA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGA-TG----AATGA---ATACA-TGA---AACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTTGACATA-TAAT--TTACAAT-GACAATGCACTAAACAATGTGTTA---------tagaaagagcccccgat
gi|8 : tcaaactatagatgatgacattatTTCTGATTCGTTTTTT---CCT---A--G-AA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCG-GGTGTGGACAA---G---A-AAA---AACAAGACATAGTATAA----------ACTTGCCCTAT-----TAACATATT--TCTTTACAATACAAG-TACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGACCTGCAATAGC--TG----GTTTCATgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|4 : tcATTTACTTTCTTTTCAAAGTAAACTTAG-GG----AATGA---A---A-GAG---AAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTATAACATAGT--T--TTACAGC-AAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGATCTGCAACAGG--TG----AAACCA--GTTTATTTTTATTCGCATGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA------ATATACAAACT--CAAATA-AATAAAAACCTTATC-AA--AATGAC-CAACA--TCTGACAGAAA------GTATAAACCAACTTTCAATATAATAACTTTATAACCACAAAATCTACCTCAT---ACTGT-A--TATACAGTTTA--AAATACC-ACATA---AACACC--------ATGTTGTTTTTT-TGTACT-----T-GA----TT-TTGACC--------GCTTTT--------GGGT--GGGATTG-CGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAAT-GAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGA--CTCGTGCTCTATACCCTTGAATAAACA--C--TACACA-TATATGTATTCATTTGCTGTAAACC------TAAA-ATAAATACATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|16 : TAA---A---A-CAA---CACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTTACCATAATA-T--TTACAAT-TAAAATAT----AACGATCTGACA---------AA------------C
gi|6 : gtaaagtactttattgttttaaatattaatttAAAACGATCTATCA---------AA------------CATC
gi|8 : CCTGCAATAGCTGGTTTCAT--C-GACAGTC--AATATAAAAATT--CGAATA-AATT---ACTTTACCGAA--AATAAC-tgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|6 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacga------AT--CTGACAGGAAGTGTATACCAACTTTCAAAAATAGTTAC---TTCAT--AA--CACGAT--AACG--ACTT-CATGTAGT---TATATATACA-GTTTTAAATACGACAA------AAC-ACCATTTTT---TC------TTTT-T--TATAC--TTTA-----------CTTT---GACCTCTTTTGGGTGGGGTNNNNNNN-NNNNNN-----N-NN----NN-NNNN----------N----N--------NNGG--GGG---G-GGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGA-CCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGG--CTCGCGCTCTATACCCTTGACTGAACA--T--TACACG-TATATGTATTCATTTGTTTTAAACC------CATA-ATAAATACATacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|12 : aaaacgatctatcaaacATAAACAAAAT--GAAATA-AATTACAACATT-TTAAA--CAT----CAATA--T---ACACCAAATCCCTGTATG-ATT-ACTTCAAA--------------AACCACAACATCAATCTCATTCAACTGT-----ATACATTTTACTGATCACCTGCATTTTTAATCTT---------TCTCTTTATTTATGTCCC-----TGAA----CT-TTGACCTTTTTGCTG----T--------AGCT--GC---CG-GGAGATCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACA
gi|2 : gccaTTTA-TGTACT-----T-GG----CA-TTGA----------A----CTCTTTTCGGACT--GTG--TGAGGAA-TATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGA-CCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAG--GAAGCTCGGTCTTCATACCCTTGACTAAACA-----TA-AC-----CTGTATTGATTTGCTTTAAACC------TACA-ATAAACACATATATTTTCTAATT---CGCTTTGC---TCA---AACG-AA-------AAT-----ATTTGTTTTCCTTTTAA---AA-AAAATC-GT-G-----GAATAGAAA--AG----AACA-A-TACATGGTGT-GCG--ATTGTCA-CTT-ACAT-TGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCTATTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTT
gi|15 : aGG--CTTGTGCTCTTTACCCTTGACTGAACATT----ACACA-TATGTGTATTCATTTTCTTTAGACCTGTATATATA-ATAAAAACA--TAGTTTATCATTTAATGCATT-----TCA---GA---AA-------AATAcataatttataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|10 : tacataacatgactgacattgtaaggatatactgacagatgaACCATTTACTATACAATACACATACACATATACTTTAAACG------TATA-ATGAGTGCATTTATTTTCTAATT---CGCCTTGC---TTA---AAAGTAA-------CATAAATCA-TCA---TCTTGTTAATACAGTCAGTTC-AA-T-----AACTTAAGGTTTC-----ACT-A-GATACGGTATAGCA--GT--TCA-CTT-GCAT-TGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCCC-CCGATtt
gi|11 : taactatcatgtaatacagactgttcgcgtgcaccaaTCAAAC-------TATAGATGATGACATT-ATTTTATCACT---CTCTTTGC---TTA---AACA-AA-------AATACATCATTTATTCACTTTTCAA---AGTAAATTC-GATG-----AA--TGAAT--ACATGAAACA-A-TACATTATATAAGACTATTATTT-CTT-GGAT-TGTCG
gi|3 : TGTTTTCTAATT---CGCTATGC---TCA---AACG-AA-------AATAAATCATTTAGGTTCTTTTCAA---ATTAAACTC-AG-G-----GACTTAAAG--GG----AACA-A-GACATGGTATAGGA--ATTGTCA-CTT-GCA------GTTATAACATagttgacatataatttacaatgacaatgcactaaacaatgtgttagtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|5 : TATTTTCTAATA---CGCTTTGC---TCA---AACG-AA-------AATAAATAATTCAATTTCTTTTCAA---GACAAATTT-AG-G-----A----CAAG--AG----AACA-A-AGCATGGTATAGTA--G-TGTCA-CTT-GCGT-TGTCGTTATAACATatttttacagtaaaaatacacaaaactctgtcaaacatcctgtcataatcagaggagctgcaacagctgataccatgggattttatttgcatgaatcatccttgtcctgcaatggctatctgtcactatacaaactcaaataaataacaacctcattaaaatgaccaacatctgacagaaagtatatactttcaaatataattacacaataaccacactatctacttcatactgtataatatacagtttaacataccacatgcacaccaagttgtcttttttgtactgctcttggaccgctgttgggtgggggttgggggtccatgaaaatatgtgtaaacaacgtaacaattcggcaaccgcaatgacctcgaatggagcaggcctacacttgtatcacttatataccgactgtatcgtacaagttaactcgtactctatacccttgactggacattacacgtattcgtttactttaaaccaacaataaatacatt
gi|9 : TATTTTCTAATT---CGCTTTGC---TCA---AACA-AA-------AATAAATCATTTCTTTTCTTTTCAA---AGTAAACTC-AATGTTAATGAGTTAATG--AG----AACA-A-TACATGGTATAAGA--ATTGTCA-TTT-GCAT-TGCTGTTATAACATattttacagtaaagattcacaaagcgatcggtgaaacatcctgtcatacatgataaaaggatctgcaacagcttttaccatggacgttttatttgcataaaacacccttgttctacgatggctatctgtcaatatatctactgaaataaattacagtcttattagaaaggtccatcatctgacagaaagtgtatacaaactttcaaatataattacttcataaccacaatatcgatatcatttgactgtatatacagttttaattaccacataaacaccgtgttttcttctttgttctctactttgacatagtttgggtgggatgggggatcatatgaaaacaacgtaactattcggcaaatgcaatgtcctcgaatggagagggcctacccatgtatcacttctaaacagactgtatcgcactagttagctcttgctctttacccttgactgaacattacacgtatatgt
gi|14 : TATTTTCTAATT---CGCTTTGCATTTCATTTATC---ATTTATTTAACAAATCATTTATTTTCTTTACAA---AGCAATCTG-AG-G-----GATTTAAAG--AG----AACA-A-TATATTGTATAAGA--ATTGTCA-CTT-GCAT-TGCCGTTATAATATagtttacagtaaagatgcacaaagcgatctgtcaaacatcctgtcataataagaaaatctgcaacacctgataccctggaggttttattcacacgaaacacccttttcctgcaatggctatttgtcaataaacaaactcatataaattacaacctta
gi|7 : TATTTTCTAATT---AGCTTT-C---TCA---AACG-AA-------AATAAAGCATTTATCTTC-TTTCAC---AATAAACTC-AA-A-----GAGTAAAAG--AC----TACA-A-GACATTTTATATGAT-AGTGTCT-CTT-GCAT-TGCCATTGTAACATttttcacaataaagatgcacaaaacgatctatcaaacat
gi|8 : TCTTCTGATT---CGTTTTTT---CCT---A--G-AA-------AA-AAAT-GTTT----TCTTTTCAT---AGTACATTCCGG-GTGT--GGACAAGAA--AA----AACA-A-GACATAGTATA-AA--CTTGCCCTATTAACATATTTCTTTACAATA-CAA-GTACACACAAGGATCTGTCAA-AAG-TGC-AATatttacattaaattcaaataacaatttgtcagatcctcagagcatctggtcatatgtagaataactgtaacagcattgtattatatacaattttctcatagtgaaattcctgttcttgaacagttacagttctcaataaacaaactcttatataatattattagaataaagactcaacaactcaaacagaaatttatactctaaaattcatctagaagagctaacttctaaaacca
gi|4 : ATTTACTTTCTTTTCAA---AGTAAACTT-AG-G-----GAATGAAAG--AG----AAAA-A-TACATGGTATAGGA--AATTTCA-CTT-GTAT-TGCCGTTATAACATaaagcaggctgccataatatatgacgacctgcaatagctggtttcatcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|16 : TTAAA---AC----AACACACGACATGG-ACAATG--ATTGTCA-CTT-GCTT-TGCCGCTTTACCATagttttacagcaaagatgcacaaaacaatctgtttatcatcctgtcataaaataaggatctgcaacaggtgaaaccagtttatttttattcgcatgaaacacccttgtcctgtaatggctatctgtcaatatacaaactcaaataaataaaaaccttatcaaaatgaccaacatctgacagaaagtataaaccaactttcaatataataactttataaccacaaaatctacctcatactgtatatacagtttaaaataccacataaacaccatgttgtttttttgtacttgattttgaccgcttttgggtgggattgcggttcttatgaaaatatgtgtaaacatcttaattatttggcaaacgcaatgacaatgaatggagagggcctacacttgtatcacttatataccggctgtatcgcacgatttgactcgtgctctatacccttgaataaacactacacatatatgtattcatttgctgtaaacctaaaataaatacat
gi|13 : gtaaagtactttattgttttaaatattaattTTCGTACCAAACGTTCTCAGACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATATaatatttacaattaaaatataacgatctgacaaac
gi|2 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaa-----------TACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACAc
Alignments
lowQualScore : 1111111 1111 11 22222222222222222222222 2222 111111 11111 11111 333333333333333333333 222222 3333 111 11111 1 11111 2222222222222 88888888888888888 1111 1 11111 222 111111 111 111 111111 111 1 1 111 4444444444 2 2 2 1
lowQualScore : 888 888 0 0 6666666 5555 0 0 777 777 4 1 1 99 0 4 22 4 55 1 1 1 4 55555555555555555555555 0000 22 77 77 5 22 7 6 666666 77 3 88888 0 66 5 22222 66 888 444444444444444444444 1 3 555555 3 2222 6 3 111 99 1 6 11111 2 6 9 3 44444 0000000000000 5 55555555555555555 77 77 2222 1 5 5 1 44444 0 0 555 777 2 2 3 666666 000 3 1 2 555 000000 4 0 7 3 44 0 1 999 1 2 7 3 3 333 1 3333333333 3 4 3 77 0 2 66 3 0 0 3 4 4 2 3 4 666666 5 4 1 7 1 555 22 0 1 6 1 2 88
lowQualScore : ... ... . . ....... .... . . ... ... . . . .. . . .. . .. . . . . ....................... .... .. .. .. . .. . . ...... .. . ..... . .. . ..... .. ... ..................... . . ...... . .... . . ... .. . . ..... . . . . ..... ............. . ................. .. .. .... . . . . ..... . . ... ... . . . ...... ... . . . ... ...... . . . . .. . . ... . . . . . ... . .......... . . . .. . . .. . . . . . . . . . ...... . . . . . ... .. . . . . . ..
lowQualScore : 888 888 4 2 2222222 6666 9 7 000 000 0 0 5 55 8 0 88 0 55 4 0 4 8 33333333333333333333333 0000 77 99 99 7 00 3 7 444444 99 6 88888 1 99 0 55555 99 888 555555555555555555555 7 3 222222 3 3333 7 3 777 22 0 7 88888 2 7 2 2 33333 0000000000000 7 99999999999999999 99 99 2222 4 1 7 7 33333 1 2 666 000 5 2 1 444444 000 2 2 5 000 000000 0 7 3 7 77 7 0 777 0 3 3 7 3 000 0 5555555555 0 0 0 00 0 5 55 0 0 0 0 0 0 5 0 0 000000 0 0 0 3 0 333 00 7 0 7 0 5 00
consensus : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--TTTCAAATATAATTAC-TTCA-TAACCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACA---TAAACACCGTG-T-TTTCTTTTT-----TGTACT-----TG-A----CT-TTGACCT-------G------T--GGG--TGNG--TGGGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA-TTACACGTATACGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTCG-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Reference ( family-138 ) : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAANACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTNAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATTAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACNA--TTTCAAATATAATNAC-TT-A-TAACCACAATATCTACCTCAT-T--A-CTGTNTA---TACAGTTTA--AANTACC-ACA---TNAACACCGTG-TGTTTCTTTTT-----TGTACT-----TG-A----CT-TTGA----------G------T--GGG--TGNG--TGGGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACATTTACACGTATACGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGGANTTAAAG-AGAACAANACATGGTATAGGAATTGTCACTTGCATTGCCGTTATAACATCGA-ACACACACAAAGAAAGGNCAA-CNG-T-GCTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTNNNNNNTTCGTACCAAACGTTCTCAGACGCCAGTTTGTGCCAANATGANTNCGTACTGTTTGATATACGATAGNNAATGGCATACATTTCNGTCAAACAGGTANCATTTACACTCATGTAATAGCAATTTATAT
gi|1 : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTAT-AACATA-GT-T--TTACAGTCAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGAT--CCGCAACATC--TG-ATATCATGGTTTTTTTATTCGCA-TGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACG--TCTG---ACAGAAAGTACATGTAT---ATACCA--TTTTAAATATAATAAT-TTCA-TAACCACAATATCTACCTCAT----A-TTGTTTA---TACAGTTTA--AAATACC-ACA---TAAACCTCGTG-TGTTTTTTTTT-----TGTACT-----TA-A----CT-TTGA----------G------T--GAG--TGTG--TGGGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGAACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGACTCGTGCTCAATACCCTTGACTGACCATTTTAACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTTATTCGCTTTGCTCAAACG-AAAATAAATCATTTATGTTCTTTTCAAAGTAAACTCGGGAAATTAAAG-ACAACAAGACATGGTATAGGAATTGTCAATTGCATTGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGAT-GC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTCA-----------GTGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATAT
gi|10 : TATCATGTA-ATACAGACTGT-TCGC------------GTGCACCAAACCATTTACTATACAAT-ACACATACACATAT------ACTTTAAACG------TATAATGAGTGCA---TTTATTTTCTAATTCGCCTTGCTTAAAAGTAACATAAATCA-TCATCTTGTTAATACAGTCAGTTCAATAACTTAAGGTTTCACTAGATACGGTATAGCAGT--TCACTTGCATTGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCta
gi|11 : taacTTTATCACTCTCTTTGC---TTA---AACAAA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGATG----AATGA---ATACA-TGAAACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTT-GACATATAA-T--TTACAATGACAATGCACTAAACAATGTGTTA---------ccccgat
gi|12 : tcaaactatagatgatgacattatATAAACAAAATGAAATAAATTACAACATT-TTAAA--CAT----C-----AATA--T------ACACCAAATCCCTGTAT---G-ATTA--CTTCAAA----------------AACCACAACATCAATCTCAT-TCAA-CTG--TA---TACATTTTACTGATCACCTGCATTTTTAA--------TCTTTCTCTTTATTTATGTCCC-----TGAA----CT-TTGACCTTTTTGCTG------T--AGC--TGCC--GGGAGA-TCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACAgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|13 : gccaTTCGTACCAAACGTTCTCAGACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATAT
gi|14 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaaTTTCTAATTCGCTTTGCATTTCATTTATC--ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAGGG----ATTTA---A---A-GAGAACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AATAT--TT-T--TCACAATAAAGATGCACAAAACGATCTATCA---------AA------------CATc
gi|15 : tatATATACTGACAG------ATGAG---GCTTGTGCTCTTTACCCTTGACTGAACA-TTACACATATGTGTATTCATTTTCTTTAGACCTGTATATATAATAAAAACATAGTTTATCATTTAAT--GCATT--TCAGA---AAAATA
gi|16 : tacataacatgactgacattgtaaggTAA---A---A-CAACACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTT-ACCATA-ATAT--TTACAATTAAAAT----ATAACGATCTGACA---------AA------------Ctt
gi|2 : gtaaagtactttattgttttaaatattaatttTTTA-----TGTACT-----TG-G----CA-TTGA----------ACTCTTTT--CGGACTGTG--TGAGGAATATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGACCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAGGAAGCTCGGTCTTCATACCCTTGACTAAACAT--A-ACCT----GTATTGATTTGCTTTAAACC------TACAATAAACACA---TATATTTTCTAATTCGCTTTGCTCAAACG-AAAATA-----TTTGTTTTCCTTTTAAAA-AAAATCGTGGAATAGAAA-AGAACAATACATGGTGTGCGA-TTGTCACTTACATTGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCTA-TTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTCATAATTT
gi|2 : aCATACAAAGGGTCCTTGTACGCCAGTCTATACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACACataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|3 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatattttctaattcgctttgctcaaacgaaaatatttgttttccttttaaaaaaaatcgtggaatagaaaagaacaatacatggtgtgcgattgtcacttacattgccgttataatatcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaataTTTCTAATTCGCTATGC---TCA---AACGAA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAGGG----ACTTA---A---A-GGGAACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTAT-AACATA-TT-T--TTACAGTAAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAG--CTGCAACAGC--TG-ATACCATGGGATTTT-ATTTGCA-TGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTATA----CAAACTCAAATAAATAACAACCTCATTAAA--A-TGAC-C-----AACA--TCTG---ACAGAAAGT------AT---ATAC----TTTCAAATATAATTAC-AC-AATAACCACACTATCTACTTCAT----A-CTGTATAATATACAGTTTA--ACATACC-ACA---TGCACACCAAG-T-TGTCTTTTT-----TGTACTGCTCTTG-GACCGCTGTTGG----------G------T--GGG--GGT---TGGGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGACCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAACTCGTACTCTATACCCTTGACTGGACAT-------TACACGTATTCGTTTACTTTAAACC------AACAATAAATACA---TTa
gi|4 : tgtATTTACTTTCTTTTCAAAGTAAACTTAGGG----AATGA---A---A-GAGAAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTAT-AACATA-GT-T--TTACAGCAAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGAT--CTGCAACAGG--TG-AAACCAGTTTATTTTTATTCGCA-TGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA----ATATACAAACTCAAATAAATAAAAACCTTATC-AA--AATGAC-C-----AACA--TCTG---ACAGAAA------GTAT---AAACCAACTTTC-AATATAATAACTTT-A-TAACCACAAAATCTACCTCA--T--A-CTGTATA---TACAGTTTA--AAATACC-ACA---TAAACACCATGTTGT---TTTTT-----TGTACT-----TG-A----TT-TTGACC--------GCTTT--T--GGG--TGGGATTGCGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAATGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGACTCGTGCTCTATACCCTTGAATAAACA-CTACACATATATGTATTCATTTGCTGTAAACC------TAAAATAAATACA---T
gi|5 : TTTCTAATACGCTTTGC---TCA---AACGAA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAGG--------AC---A---A-GAGAACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTAT-AACATA--T-T--TTACAGTAAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGAT--CTGCAACAGC--TT-TTACCATGGACGTTTTATTTGCA-TAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATATATCTAC----TGAAATAAATTACAGTCTTATTAGA--AAGGTC-C-----ATCA--TCTG---ACAGAAAGT----GTAT---ACAAAC--TTTCAAATATAATTAC-TTCA-TAACCACAATATCGATATCAT-TTGA-CTGTATA---TACAGTTTT--AATTACC-ACA---TAAACACCGTG-T-TTTCTTCTT-----TGTTCT-----CT-A----CT-TTGACATA------G------TTTGGG--TGGGA-TGGGGGATCATATGAAA-A---------------CAACGTAACTATTCGGCAAATGCAATGTCCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAGCTCTTGCTCTTTACCCTTGACTGAACA-TTACACGTATATGT
gi|6 : tatAA--AACGAT-CTATCAAACA--TCTG---ACAGGAAGT------GT---ATACCAACTTTCAAAAATAGTTAC-TTCA-TAAC-ACGATAACGACTTCATGT--AGTTATATA---TACAGTTTT--AAATACG-ACA----AAACACCATT-T-TTTCTTTTT-----TATACT-----TT-A----CT-TTGACCTCTT----T------T--GGG--TGGG--
gi|6 : GGG--GGGGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGACCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGGCTCGCGCTCTATACCCTTGACTGAACA-TTACACGTATATGTATTCATTTGTTTTAAACC------CATAATAAATACA---Tgtnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|7 : aaaacgatctatcaaacatctgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnngTTTCTAATTAGCTTT-C---TCA---AACGAA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAAAG----AGTAA---A---A-GACTACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGT-AACATA----T--TTACA-TTAA-ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCAT-----ATGT-AGAATAACTGTAACAGCATTGTATTATATACAATTTT--CTCATAGTGAAATTCC--TGTTCTTGAACAGTT------ACAGTTCTCAATA-A---ACAAACTC--TTA---TATAATATTATTAGAATAAAGACTC-----AACAACTCAA---ACAGAAATT---TATA
gi|8 : tatTTCTGATTCGTTTTTT---CCT---A--GAA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCGGGTGTGGACAA---G---A-AAAAACAAGACATAGTATAA----------ACTTGC----CC--TATTAACATA-TT-TCTTTACAATACAAGTACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGAC--CTGCAATAGC--TG-GTTTCATctctaaaattcatctagaagagctaacttctaaaacca
gi|8 : tcCCTGCAATAGCTGGTTTCAT--C-GACAGTCAATATAAAAATTCGAATAAATT---ACTTTACCGAA--AATAAC-A-----CACA--TTCGTTTAC--AAATC---TATATTAAGTACG---TTTCAATTATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|9 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacgaTTTCTAATTCGCTTTGC---TCA---AACAAA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAATGTT--AATGAGTTA---ATGAGAACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTAT-AACATA-GT-T--T-ACAGTAAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAAT--CTGCAACACC--TG-ATACCCTGGAGGTTTTATTCACA-CGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA-A---ACAAACTCATATAAATTACAACCTTAggta
Alignments
lowQualScore : 1111111 1111 11 22222222222222222222222 2222 111111 11111 1111111 3333333 111 1111111 33333 111 1111 11111 6666666666666666666666 222 1 11111 111111 111 111 111 1 1 1 222 1 1 1 1 2222
lowQualScore : 888 888 0 0 6666666 5555 0 0 777 777 4 1 1 99 0 4 22 4 55 4 55555555555555555555555 0000 22 77 77 5 22 7 6 666666 77 3 88888 0 66 22 3333333 66 2 888 0 5555555 000 7777777 1 6 1 11111 6 111 99 6 4444 3 2 6 1 44444 88 0000000000000000000000 5 1 000 1 5 5 1 44444 0 0 555 66 3 5 2 666666 000 3 1 2 555 3 7 1 7 1 1 444 0 2 7 1 3 5 111 5 1 1 1 22 5 1 22 1 5 5 1 1 1 1 1 1 444 9999 3 1 7 44 0 0 6 1 22
lowQualScore : ... ... . . ....... .... . . ... ... . . . .. . . .. . .. . ....................... .... .. .. .. . .. . . ...... .. . ..... . .. .. ....... .. . ... . ....... ... ....... . . . ..... . ... .. . .... . . . . ..... .. ...................... . . ... . . . . ..... . . ... .. . . . ...... ... . . . ... . . . . . . ... . . . . . . ... . . . . .. . . .. . . . . . . . . . ... .... . . . .. . . . . ..
lowQualScore : 888 888 4 2 2222222 6666 9 7 000 000 0 6 5 55 8 0 88 0 55 8 33333333333333333333333 0000 77 99 99 7 00 3 7 444444 99 6 88888 1 99 22 8888888 99 2 888 1 1111111 000 6666666 4 7 0 55555 7 777 22 7 2222 2 2 7 0 33333 77 6666666666666666666666 7 0 666 4 1 7 7 33333 1 2 666 99 2 4 0 444444 000 2 2 5 000 2 3 0 3 0 0 000 7 0 3 0 3 5 555 5 0 0 0 00 5 0 00 0 5 5 0 0 0 0 0 0 555 3333 7 0 3 33 7 7 7 0 00
consensus : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACA----TAAACACCGTGT-TTTCTTTTT-----TGTACTTN-ACTTTGAC-------C-C-TN---T----GGG-TGGG---TGGGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Reference ( family-138 ) : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACA----TAAACACCGTGT-TTTCTTTTT-----TGTACTTG-ACTTTGAC-------C---TG---T----GGG-TGNG---TGGGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATACGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
gi|1 : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTAT-AACATA-GT-T--TTACAGTCAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGAT--CCGCAACATC--TG-ATATCATGGTTTTTTTATTCGCA-TGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACG--TCTG---ACAGAAAGTACATGTAT---ATACCA--T-TTTAAATATAATAATTTCATAA-CCACAATATCTACCTCA--T--A-TTGTTTA---TACAGTTTA--AAATACC-ACA----TAAACCTCGTGTGTTTTTTTTT-----TGTACTTA-ACTTTGA-------------G---T----GAG-TGTG---TGGGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGAACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGACTCGTGCTCAATACCCTTGACTGACCATTTTA-ACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTTATTCGCTTTGCTCAAACG-AAAATAAATCATTTATGTTCTTTTCAAAGTAAACTCGGGAAATTAAAG-ACAACAAGACATGGTATAGGAATTGTCAATTGCATTGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGA-TGC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTC-A-----------GTGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATAT
gi|10 : TATCATGTA-ATACAGACTGT-TCGC------------GTGCACCAAACCATTTACTATACA--ATACACATACACATAT------ACTTTAAACG------TATAATGAGTGCA---TTTATTTTCTAATTCGCCTTGCTTAAAAGTAACATAAATCA-TCATCTTGTTAATACAGTCAGTTCAATAACTTAAGGTTTCACTAGATACGGTATAGCAGT--TCACTTGCATTGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCta
gi|11 : taacTTTATCACTCTCTTTGC---TTA---AACAAA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGATG----AATGA---ATACA-TGAAACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTT-GACATATAA-T--TTACAATGACAATGCACTAAACAATGTGTTA---------ccccgat
gi|12 : tcaaactatagatgatgacattatATAAACAAAATGAAATAAATTACAACATT-TTAAA-----------------CA--TC----------AA-------TAT---ACACCA--AATCCCTGTATGATTACTTCAAAAACCACAACATCAATCTCAT-TCAA-CTG--TA---TACATTTTACTGATCACCTGCATTTTTAATC--------TTTCTCTTTATTTATGTCCCTGAACTTTGACCTTTTTGC---TG---T----AGC-TGCC---GGGAGA-TCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACAgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|13 : gccaTTCGTACCAAACGTTCTCAG-ACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATAT
gi|14 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaaTTTCTAATTCGCTTTGCATTTCATTTATC--ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAGGG----ATTTA---A---A-GAGAACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AATAT--TT-T--TCACAATAAAGATGCACAAAACGATCTATCA---------AA------------CATc
gi|15 : tatATATACTGACAG------ATGAG---GCTTGTGCTCTTTACCCTTGACTGAACA--TTACACATATGTGTATTCATTTTCTTTAGACCTGTATATATAATAAAAACATAGTTTATCATTTAAT--GCATT--TCAGA---AAAATA
gi|16 : tacataacatgactgacattgtaaggTAA---A---A-CAACACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTT-ACCATA-ATAT--TTACAATTAAAAT----ATAACGATCTGACA---------AA------------Ctt
gi|2 : gtaaagtactttattgttttaaatattaatttTTTA-----TGTACTTG-GCATTGAA-------C---TC---TTTTCGGACTGTG---TGAGGAATATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGACCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAGGAAGCTCGGTCTTCATACCCTTGACTAAACA--TAAC-C-----TGTATTGATTTGCTTTAAACC------TACAATAAACACA---TATATTTTCTAATTCGCTTTGCTCAAACG-AAAAT-----ATTTGTTTTCCTTTTAAAA-AAAATCGTGGAATAGAAA-AGAACAATACATGGTGTGCGA-TTGTCACTTACATTGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCT-ATTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTCATAATTT
gi|2 : aCATACAAAGGGTCCTT-GTACGCCAGTCTATACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACACataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|3 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatattttctaattcgctttgctcaaacgaaaatatttgttttccttttaaaaaaaatcgtggaatagaaaagaacaatacatggtgtgcgattgtcacttacattgccgttataatatcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaataTTTCTAATTCGCTATGC---TCA---AACGAA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAGGG----ACTTA---A---A-GGGAACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTAT-AACATA-TT-T--TTACAGTAAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAG--CTGCAACAGC--TG-ATACCATGGGATTTT-ATTTGCA-TGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTATA----CAAACTCAAATAAATAACAACCTCATTAAA--A-TGAC-C-----AACA--TCTG---ACAGAAAGT------AT---ATAC----T-TTCAAATATAATTACACAATAA-CCACACTATCTACTTCAT----A-CTGTATAATATACAGTTTA--ACATACC-ACA----TGCACACCAAGT-TGTCTTTTT-----TGTACTGC-TCTTGGAC-------CGC-TG---TT---GGG-TGGGGGTTGGGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGACCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAACTCGTACTCTATACCCTTGACTGGACA--TTAC------ACGTATTCGTTTACTTTAAACC------AACAATAAATACA---TTa
gi|4 : tgtATTTACTTTCTTTTCAAAGTAAACTTAGGG----AATGA---A---A-GAGAAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTAT-AACATA-GT-T--TTACAGCAAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGAT--CTGCAACAGG--TG-AAACCAGTTTATTTTTATTCGCA-TGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA----ATATACAAACTCAAATAAATAAAAACCTTATC-AA--AATGAC-C-----AACA--TCTG---ACAGAAA------GTAT---AAACCAACT-TTC-AATATAATAACTTTATAA-CCACAAAATCTACCTCA--T--A-CTGTATA---TACAGTTTA--AAATACC-ACA----TAAACACCATGT-TGT-TTTTT-----TGTACTTG-ATTTTGAC-------CGCTTT---T----GGG-TGGGAT-TGCGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAATGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGACTCGTGCTCTATACCCTTGAATAAACA--CTACACATATATGTATTCATTTGCTGTAAACC------TAAAATAAATACA---T
gi|5 : TTTCTAATACGCTTTGC---TCA---AACGAA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAGG--------AC---A---A-GAGAACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTAT-AACATA--T-T--TTACAGTAAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGAT--CTGCAACAGC--TT-TTACCATGGACGTTTTATTTGCA-TAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATATATCTAC----TGAAATAAATTACAGTCTTATTAGA--AAGGTC-C-----ATCA--TCTG---ACAGAAAGT----GTAT---ACAAAC--T-TTCAAATATAATTACTTCATAA-CCACAATATCGATATCAT-TTGA-CTGTATA---TACAGTTTT--AATTACC-ACA----TAAACACCGTGT-TTTCTTCTT-----TGTTCTCT-ACTTTGAC-------A---TAGTTT----GGG-TGGGA--TGGGGGATCATATGAAA-A---------------CAACGTAACTATTCGGCAAATGCAATGTCCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAGCTCTTGCTCTTTACCCTTGACTGAACA--TTACACGTATATGT
gi|6 : tatAA--AACGAT-CTATCAAACA--TCTG---ACAGGAAGT------GT---ATACCAACT-TTCAAAAATAGTTACTTCATAA--CACGATAACGACTTCATGT--AGTTATATA---TACAGTTTT--AAATACG-ACA-----AAACACCATTT-TTTCTTTTT-----TATACTTT-ACTTTGAC-------CTCTTT---T----GGG-TGGG---
gi|6 : GGG---GGGGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGACCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGGCTCGCGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGTTTTAAACC------CATAATAAATACA---Tgtnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|7 : aaaacgatctatcaaacatctgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnngTTTCTAATTAGCTTT-C---TCA---AACGAA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAAAG----AGTAA---A---A-GACTACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGT-AACATA----T--TTACATTAA--ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCAT-----ATGT-AGAATAACTGTAACAGCATTGTATTATATACAATTTT--CTCATAGTGAAATTCC--TGTTCTTGAACAGTT------ACAGTTCTCAATA-A---ACAAACTC--TTA---TATAATATTATTAGAATAAAGACTC-----AACAACTCAA---ACAGAAATT---TATA
gi|8 : tatTTCTGATTCGTTTTTT---CCT---A--GAA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCGGGTGTGGACAA---G---A-AAAAACAAGACATAGTATAA----------ACTTGC----CC--TATTAACATA-TT-TCTTTACAATACAAGTACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGAC--CTGCAATAGC--TG-GTTTCATctctaaaattcatctagaagagctaacttctaaaacca
gi|8 : tcCCTGCAATAGCTGGTTTCAT--C-GACAGTCAATATAAAAATTCGAATAAATT---ACTTTACCGAA--AATAAC-A-----CACA--TTCGTTTAC--AAATC---TATATTAAGTA-CG--T-TTCAATTATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|9 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacgaTTTCTAATTCGCTTTGC---TCA---AACAAA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAATGTT--AATGAGTTA---ATGAGAACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTAT-AACATA-GT-T--T-ACAGTAAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAAT--CTGCAACACC--TG-ATACCCTGGAGGTTTTATTCACA-CGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA-A---ACAAACTCATATAAATTACAACCTTAggta
Alignments
lowQualScore : 1111111 1111 11 22222222222222222222222 2222 111111 11111 1111111 3333333 111 1111111 33333 111 1111 111 33333333333333333333 22222222 1 11111 111111 111 111 111 1 1 1 222 1 1 1 1 2222
lowQualScore : 888 888 0 0 6666666 5555 0 0 777 777 4 1 1 99 0 4 22 4 55 4 55555555555555555555555 0000 22 77 77 5 22 7 6 666666 77 3 88888 0 66 22 3333333 66 2 888 0 5555555 000 7777777 1 6 1 11111 6 111 99 6 4444 3 2 2 6 1 1 5 000 1 55555555555555555555 55555555 1 5 5 1 44444 0 0 555 66 8 0 666666 000 3 1 2 555 3 7 1 7 1 1 444 0 2 7 1 3 5 111 5 1 1 1 22 5 1 22 1 5 5 1 1 1 1 1 1 444 9999 3 1 7 44 0 0 6 1 22
lowQualScore : ... ... . . ....... .... . . ... ... . . . .. . . .. . .. . ....................... .... .. .. .. . .. . . ...... .. . ..... . .. .. ....... .. . ... . ....... ... ....... . . . ..... . ... .. . .... . . . . . . . ... . .................... ........ . . . . ..... . . ... .. . . ...... ... . . . ... . . . . . . ... . . . . . . ... . . . . .. . . .. . . . . . . . . . ... .... . . . .. . . . . ..
lowQualScore : 888 888 4 2 2222222 6666 9 7 000 000 0 6 5 55 8 0 88 0 55 8 33333333333333333333333 0000 77 99 99 7 00 3 7 444444 99 6 88888 1 99 22 8888888 99 2 888 1 1111111 000 6666666 4 7 0 55555 7 777 22 7 2222 2 2 5 7 5 0 7 000 0 99999999999999999999 22222222 4 1 7 7 33333 1 2 666 99 5 1 444444 000 2 2 5 000 2 3 0 3 0 0 000 7 0 3 0 3 5 555 5 0 0 0 00 5 0 00 0 5 5 0 0 0 0 0 0 555 3333 7 0 3 33 7 7 7 0 00
consensus : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACA----TAAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--TTT--GG--G-TGGG---T----GGGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Reference ( family-138 ) : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACA----TAAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--TNT--GG--G-TGGG---T----GGGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
gi|1 : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTAT-AACATA-GT-T--TTACAGTCAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGAT--CCGCAACATC--TG-ATATCATGGTTTTTTTATTCGCA-TGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACG--TCTG---ACAGAAAGTACATGTAT---ATACCA--T-TTTAAATATAATAATTTCATAA-CCACAATATCTACCTCA--T--A-TTGTTTA---TACAGTTTA--AAATACC-ACA----TAAACCTCGTGTGTTTTTTT-TTTGTA---CTTAACTTTGA----------GT--GA--G-TGTG---T----GGGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGAACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGACTCGTGCTCAATACCCTTGACTGACCATTTTA-ACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTTATTCGCTTTGCTCAAACG-AAAATAAATCATTTATGTTCTTTTCAAAGTAAACTCGGGAAATTAAAG-ACAACAAGACATGGTATAGGAATTGTCAATTGCATTGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGA-TGC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTC-A-----------GTGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATAT
gi|10 : TATCATGTA-ATACAGACTGT-TCGC------------GTGCACCAAACCATTTACTATACA--ATACACATACA------CATATACTTTAAACG------TATAATGAGTGCA---TTTATTTTCTAATTCGCCTTGCTTAAAAGTAACATAAATCA-TCATCTTGTTAATACAGTCAGTTCAATAACTTAAGGTTTCACTAGATACGGTATAGCAGT--TCACTTGCATTGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCta
gi|11 : taacTTTATCACTCTCTTTGC---TTA---AACAAA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGATG----AATGA---ATACA-TGAAACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTT-GACATATAA-T--TTACAATGACAATGCACTAAACAATGTGTTA---------ccccgat
gi|12 : tcaaactatagatgatgacattatATAAACAAAATGAAATAAATTACAACATT-TTAAA-----------------CA--TC----------AA-------TAT---ACACCA--AATCCCTGTATGATTACTTCAAAAACCACAACATCAATCTCAT-TCAA-CTG--TA---TACATTTTACTGATCACCTGCATTTTTAATC----T-T-TCTCTTTATTTATGTCCCTGAACTTTGA-C--C-T--TTT--TGCTG-TAGC---TGCCGGGAGA-TCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACAgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|13 : gccaTTCGTACCAAACGTTCTCAG-ACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATAT
gi|14 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaaTTTCTAATTCGCTTTGCATTTCATTTATC--ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAGGG----ATTTA---A---A-GAGAACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AATAT--TT-T--TCACAATAAAGATGCACAAAACGATCTATCA---------AA------------CATc
gi|15 : tatATATACTGACAG------ATGAG---GCTTGTGCTCTTTACCCTTGACTGAACA--TTACACATATGTGTATTCATTTTCTTTAGACCTGTATATATAATAAAAACATAGTTTATCATTTAAT--GCATT--TCAGA---AAAATA
gi|16 : tacataacatgactgacattgtaaggTAA---A---A-CAACACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTT-ACCATA-ATAT--TTACAATTAAAAT----ATAACGATCTGACA---------AA------------Ctt
gi|2 : gtaaagtactttattgttttaaatattaatttTT-TATGTA---CTTGGCATTGAAC--T-C--TTTTCGG--ACTGTG---T----GAGGAATATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGACCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAGGAAGCTCGGTCTTCATACCCTTGACTAAACA--TAAC-C-----TGTATTGATTTGCTTTAAACC------TACAATAAACACA---TATATTTTCTAATTCGCTTTGCTCAAACG-AAAAT-----ATTTGTTTTCCTTTTAAAA-AAAATCGTGGAATAGAAA-AGAACAATACATGGTGTGCGA-TTGTCACTTACATTGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCT-ATTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTCATAATTT
gi|2 : aCATACAAAGGGTCCTT-GTACGCCAGTCTATACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACACataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|3 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatattttctaattcgctttgctcaaacgaaaatatttgttttccttttaaaaaaaatcgtggaatagaaaagaacaatacatggtgtgcgattgtcacttacattgccgttataatatcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaataTTTCTAATTCGCTATGC---TCA---AACGAA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAGGG----ACTTA---A---A-GGGAACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTAT-AACATA-TT-T--TTACAGTAAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAG--CTGCAACAGC--TG-ATACCATGGGATTTT-ATTTGCA-TGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTATA----CAAACTCAAATAAATAACAACCTCATTAAA--A-TGAC-C-----AACA--TCTG---ACAGAAAGT------AT---ATAC----T-TTCAAATATAATTACACAATAA-CCACACTATCTACTTCAT----A-CTGTATAATATACAGTTTA--ACATACC-ACA----TGCACACCAAGT-TGTCTTT-TTTGTA---CTGCTCTTGGA-C--CGC--TGTT-GG--G-TGGGGGTT----GGGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGACCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAACTCGTACTCTATACCCTTGACTGGACA--TTACAC------GTATTCGTTTACTTTAAACC------AACAATAAATACA---TTa
gi|4 : tgtATTTACTTTCTTTTCAAAGTAAACTTAGGG----AATGA---A---A-GAGAAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTAT-AACATA-GT-T--TTACAGCAAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGAT--CTGCAACAGG--TG-AAACCAGTTTATTTTTATTCGCA-TGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA----ATATACAAACTCAAATAAATAAAAACCTTATC-AA--AATGAC-C-----AACA--TCTG---ACAGAAA------GTAT---AAACCAACT-TTC-AATATAATAACTTTATAA-CCACAAAATCTACCTCA--T--A-CTGTATA---TACAGTTTA--AAATACC-ACA----TAAACACCATGT-TGT-TTT-TTTGTA---CTTGATTTTGA-CCGC-T--TTT--GG--G-TGGGAT-T----GCGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAATGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGACTCGTGCTCTATACCCTTGAATAAACA--CTACACATATATGTATTCATTTGCTGTAAACC------TAAAATAAATACA---T
gi|5 : TTTCTAATACGCTTTGC---TCA---AACGAA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAGG--------AC---A---A-GAGAACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTAT-AACATA--T-T--TTACAGTAAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGAT--CTGCAACAGC--TT-TTACCATGGACGTTTTATTTGCA-TAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATATATCTAC----TGAAATAAATTACAGTCTTATTAGA--AAGGTC-C-----ATCA--TCTG---ACAGAAAGT----GTAT---ACAAAC--T-TTCAAATATAATTACTTCATAA-CCACAATATCGATATCAT-TTGA-CTGTATA---TACAGTTTT--AATTACC-ACA----TAAACACCGTGT-TTTCTTC-TTTGTT---CTCTACTTTGA-C--A-TAGTTT--GG--G-TGGGA--T----GGGGGATCATATGAAA-A---------------CAACGTAACTATTCGGCAAATGCAATGTCCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAGCTCTTGCTCTTTACCCTTGACTGAACA--TTACACGTATATGT
gi|6 : tatAA--AACGAT-CTATCAAACA--TCTG---ACAGGAAGT------GT---ATACCAACT-TTCAAAAATAGTTACTTCATAA--CACGATAACGACTTCATGT--AGTTATATA---TACAGTTTT--AAATACG-ACA-----AAACACCATTT-TTTCTTT-TTTATA---CTTTACTTTGA-C--CTC--TTT--------TGGG---T----GGGG
gi|6 : GGG---G----GGGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGACCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGGCTCGCGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGTTTTAAACC------CATAATAAATACA---Ttnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|7 : aaaacgatctatcaaacatctgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnngTTTCTAATTAGCTTT-C---TCA---AACGAA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAAAG----AGTAA---A---A-GACTACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGT-AACATA----T--TTACATTAA--ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCAT-----ATGT-AGAATAACTGTAACAGCATTGTATTATATACAATTTT--CTCATAGTGAAATTCC--TGTTCTTGAACAGTT------ACAGTTCTCAATA-A---ACAAACTC--TTA---TATAATATTATTAGAATAAAGACTC-----AACAACTCAA---ACAGAAATT---TATA
gi|8 : tatTTCTGATTCGTTTTTT---CCT---A--GAA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCGGGTGTGGACAA---G---A-AAAAACAAGACATAGTATAA----------ACTTGC----CC--TATTAACATA-TT-TCTTTACAATACAAGTACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGAC--CTGCAATAGC--TG-GTTTCATctctaaaattcatctagaagagctaacttctaaaacca
gi|8 : tcCCTGCAATAGCTGGTTTCAT--C-GACAGTCAATATAAAAATTCGAATAAATT---ACTTTACCGAA--AATAAC-A-----CACA--TTCGTTTAC--AAATC---TATATTAAGTA-CG--T-TTCAATTATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|9 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacgaTTTCTAATTCGCTTTGC---TCA---AACAAA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAATGTT--AATGAGTTA---ATGAGAACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTAT-AACATA-GT-T--T-ACAGTAAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAAT--CTGCAACACC--TG-ATACCCTGGAGGTTTTATTCACA-CGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA-A---ACAAACTCATATAAATTACAACCTTAggta
Alignments
lowQualScore : 1111111 1111 11 22222222222222222222222 2222 111111 11111 1111111 3333333 111 1111111 33333 111 1111 111 33333333333 11111111 222 1111 1 11111 111111 111 111 111 1 1 1 222 1 1 1 1 2222
lowQualScore : 888 888 0 0 6666666 5555 0 0 777 777 4 1 1 99 0 4 22 4 55 4 55555555555555555555555 0000 22 77 77 5 22 7 6 666666 77 3 88888 0 66 22 3333333 66 2 888 0 5555555 000 7777777 1 6 1 11111 6 111 99 6 4444 3 2 2 6 1 1 5 000 1 00000000000 33333333 000 0000 1 5 5 1 44444 0 0 555 66 8 0 666666 000 3 1 2 555 3 7 1 7 1 1 444 0 2 7 1 3 5 111 5 1 1 1 22 5 1 22 1 5 5 1 1 1 1 1 1 444 9999 3 1 7 44 0 0 6 1 22
lowQualScore : ... ... . . ....... .... . . ... ... . . . .. . . .. . .. . ....................... .... .. .. .. . .. . . ...... .. . ..... . .. .. ....... .. . ... . ....... ... ....... . . . ..... . ... .. . .... . . . . . . . ... . ........... ........ ... .... . . . . ..... . . ... .. . . ...... ... . . . ... . . . . . . ... . . . . . . ... . . . . .. . . .. . . . . . . . . . ... .... . . . .. . . . . ..
lowQualScore : 888 888 4 2 2222222 6666 9 7 000 000 0 6 5 55 8 0 88 0 55 8 33333333333333333333333 0000 77 99 99 7 00 3 7 444444 99 6 88888 1 99 22 8888888 99 2 888 1 1111111 000 6666666 4 7 0 55555 7 777 22 7 2222 2 2 5 7 5 0 7 000 0 00000000000 99999999 666 6666 4 1 7 7 33333 1 2 666 99 5 1 444444 000 2 2 5 000 2 3 0 3 0 0 000 7 0 3 0 3 5 555 5 0 0 0 00 5 0 00 0 5 5 0 0 0 0 0 0 555 3333 7 0 3 33 7 7 7 0 00
consensus : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--T-TT--GG--G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Reference ( family-138 ) : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--T-TT--GG--G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
gi|1 : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTAT-AACATA-GT-T--TTACAGTCAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGAT--CCGCAACATC--TG-ATATCATGGTTTTTTTATTCGCA-TGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACG--TCTG---ACAGAAAGTACATGTAT---ATACCA--T-TTTAAATATAATAATTTCATAA-CCACAATATCTACCTCA--T--A-TTGTTTA---TACAGTTTA--AAATACC-ACAT----AAACCTCGTGTGTTTTTTT-TTTGTA---CTTAACTTTGA-----------GT--GA--G-TGTG---TG----GGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGAACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGACTCGTGCTCAATACCCTTGACTGACCATTTTA-ACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTTATTCGCTTTGCTCAAACG-AAAATAAATCATTTATGTTCTTTTCAAAGTAAACTCGGGAAATTAAAG-ACAACAAGACATGGTATAGGAATTGTCAATTGCATTGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGA-TGC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTC-A-----------GTGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATAT
gi|10 : TATCATGTA-ATACAGACTGT-TCGC------------GTGCACCAAACCATTTACTATACA--ATACACATACA------CATATACTTTAAACG------TATAATGAGTGCA---TTTATTTTCTAATTCGCCTTGCTTAAAAGTAACATAAATCA-TCATCTTGTTAATACAGTCAGTTCAATAACTTAAGGTTTCACTAGATACGGTATAGCAGT--TCACTTGCATTGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCta
gi|11 : taacTTTATCACTCTCTTTGC---TTA---AACAAA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGATG----AATGA---ATACA-TGAAACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTT-GACATATAA-T--TTACAATGACAATGCACTAAACAATGTGTTA---------ccccgat
gi|12 : tcaaactatagatgatgacattatATAAACAAAATGAAATAAATTACAACATT-TTAAA-----------------CA--TC----------AA-------TAT---ACACCA--AATCCCTGTATGATTACTTCAAAAACCACAACATCAATCTCAT-TCAA-CTGTATA-----CATTTTACTGATCACCTGCATTTTTAATC----T-T-TCTCTTTATTTATGTCCCTGAACTTTGA-C--C-T--T-TT--TGCTG-TAGC---TGCCGGGAGA-TCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACAgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|13 : gccaTTCGTACCAAACGTTCTCAG-ACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATAT
gi|14 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaaTTTCTAATTCGCTTTGCATTTCATTTATC--ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAGGG----ATTTA---A---A-GAGAACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AATAT--TT-T--TCACAATAAAGATGCACAAAACGATCTATCA---------AA------------CATc
gi|15 : tatATATACTGACAG------ATGAG---GCTTGTGCTCTTTACCCTTGACTGAACA--TTACACATATGTGTATTCATTTTCTTTAGACCTGTATATATAATAAAAACATAGTTTATCATTTAAT--GCATT--TCAGA---AAAATA
gi|16 : tacataacatgactgacattgtaaggTAA---A---A-CAACACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTT-ACCATA-ATAT--TTACAATTAAAAT----ATAACGATCTGACA---------AA------------Ctt
gi|2 : gtaaagtactttattgttttaaatattaatttTT-TATGTA---CTTGGCATTGAAC--T-C--T-TTTCGG--ACTGTG---TG----AGGAATATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGACCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAGGAAGCTCGGTCTTCATACCCTTGACTAAACA--TAAC-C-----TGTATTGATTTGCTTTAAACC------TACAATAAACACA---TATATTTTCTAATTCGCTTTGCTCAAACG-AAAAT-----ATTTGTTTTCCTTTTAAAA-AAAATCGTGGAATAGAAA-AGAACAATACATGGTGTGCGA-TTGTCACTTACATTGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCT-ATTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTCATAATTT
gi|2 : aCATACAAAGGGTCCTT-GTACGCCAGTCTATACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACACataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|3 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatattttctaattcgctttgctcaaacgaaaatatttgttttccttttaaaaaaaatcgtggaatagaaaagaacaatacatggtgtgcgattgtcacttacattgccgttataatatcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaataTTTCTAATTCGCTATGC---TCA---AACGAA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAGGG----ACTTA---A---A-GGGAACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTAT-AACATA-TT-T--TTACAGTAAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAG--CTGCAACAGC--TG-ATACCATGGGATTTT-ATTTGCA-TGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTATA----CAAACTCAAATAAATAACAACCTCATTAAA--A-TGAC-C-----AACA--TCTG---ACAGAAAGT------AT---ATAC----T-TTCAAATATAATTACACAATAA-CCACACTATCTACTTCAT----A-CTGTATAATATACAGTTTA--ACATACC-ACAT----GCACACCAAGT-TGTCTTT-TTTGTA---CTGCTCTTGGA-C--CGC--TGTT--GG--G-TGGGGGTTG----GGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGACCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAACTCGTACTCTATACCCTTGACTGGACA--TTACAC------GTATTCGTTTACTTTAAACC------AACAATAAATACA---TTa
gi|4 : tgtATTTACTTTCTTTTCAAAGTAAACTTAGGG----AATGA---A---A-GAGAAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTAT-AACATA-GT-T--TTACAGCAAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGAT--CTGCAACAGG--TG-AAACCAGTTTATTTTTATTCGCA-TGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA----ATATACAAACTCAAATAAATAAAAACCTTATC-AA--AATGAC-C-----AACA--TCTG---ACAGAAA------GTAT---AAACCAACT-TTC-AATATAATAACTTTATAA-CCACAAAATCTACCTCA--T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCATGT-TGT-TTT-TTTGTA---CTTGATTTTGA-CCGC-T--T-TT--GG--G-TGGGAT-TG----CGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAATGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGACTCGTGCTCTATACCCTTGAATAAACA--CTACACATATATGTATTCATTTGCTGTAAACC------TAAAATAAATACA---T
gi|5 : TTTCTAATACGCTTTGC---TCA---AACGAA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAGG--------AC---A---A-GAGAACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTAT-AACATA--T-T--TTACAGTAAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGAT--CTGCAACAGC--TT-TTACCATGGACGTTTTATTTGCA-TAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATATATCTAC----TGAAATAAATTACAGTCTTATTAGA--AAGGTC-C-----ATCA--TCTG---ACAGAAAGT----GTAT---ACAAAC--T-TTCAAATATAATTACTTCATAA-CCACAATATCGATATCAT-TTGA-CTGTATA---TACAGTTTT--AATTACC-ACAT----AAACACCGTGT-TTTCTTC-TTTGTT---CTCTACTTTGA-C--A-TAGT-TT--GG--G-TGGGA--TG----GGGGATCATATGAAA-A---------------CAACGTAACTATTCGGCAAATGCAATGTCCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAGCTCTTGCTCTTTACCCTTGACTGAACA--TTACACGTATATGT
gi|6 : tatAA--AACGAT-CTATCAAACA--TCTG---ACAGGAAGT------GT---ATACCAACT-TTCAAAAATAGTTACTTCATAA--CACGATAACGACTTCATGT--AGTTATATA---TACAGTTTT--AAATACG-ACA-----AAACACCATTT-TTTCTTT-TTTATA---CTTTACTTTGA-C--CTC--T-TT--------TGGG---TG----GGG
gi|6 : GGG---GG----GGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGACCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGGCTCGCGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGTTTTAAACC------CATAATAAATACA---Ttnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|7 : aaaacgatctatcaaacatctgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnngTTTCTAATTAGCTTT-C---TCA---AACGAA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAAAG----AGTAA---A---A-GACTACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGT-AACATA----T--TTACATTAA--ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCAT-----ATGT-AGAATAACTGTAACAGCATTGTATTATATACAATTTT--CTCATAGTGAAATTCC--TGTTCTTGAACAGTT------ACAGTTCTCAATA-A---ACAAACTC--TTA---TATAATATTATTAGAATAAAGACTC-----AACAACTCAA---ACAGAAATT---TATA
gi|8 : tatTTCTGATTCGTTTTTT---CCT---A--GAA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCGGGTGTGGACAA---G---A-AAAAACAAGACATAGTATAA----------ACTTGC----CC--TATTAACATA-TT-TCTTTACAATACAAGTACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGAC--CTGCAATAGC--TG-GTTTCATctctaaaattcatctagaagagctaacttctaaaacca
gi|8 : tcCCTGCAATAGCTGGTTTCAT--C-GACAGTCAATATAAAAATTCGAATAAATT---ACTTTACCGAA--AATAAC-A-----CACA--TTCGTTTAC--AAATC---TATATTAAGTA-CG--T-TTCAATTATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|9 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacgaTTTCTAATTCGCTTTGC---TCA---AACAAA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAATGTT--AATGAGTTA---ATGAGAACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTAT-AACATA-GT-T--T-ACAGTAAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAAT--CTGCAACACC--TG-ATACCCTGGAGGTTTTATTCACA-CGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA-A---ACAAACTCATATAAATTACAACCTTAggta
Alignments
lowQualScore : 1111111 1111 11 22222222222222222222222 2222 111111 11111 1111111 3333333 111 1111111 33333 111 1111 111 33333333333 11111111 222 1111 1 11111 111111 111 111 111 1 1 1 222 1 1 1 1 2222
lowQualScore : 888 888 0 0 6666666 5555 0 0 777 777 4 1 1 99 0 4 22 4 55 4 55555555555555555555555 0000 22 77 77 5 22 7 6 666666 77 3 88888 0 66 22 3333333 66 2 888 0 5555555 000 7777777 1 6 1 11111 6 111 99 6 4444 3 2 2 6 1 1 5 000 1 00000000000 33333333 000 0000 1 5 5 1 44444 0 0 555 66 8 0 666666 000 3 1 2 555 3 7 1 7 1 1 444 0 2 7 1 3 5 111 5 1 1 1 22 5 1 22 1 5 5 1 1 1 1 1 1 444 9999 3 1 7 44 0 0 6 1 22
lowQualScore : ... ... . . ....... .... . . ... ... . . . .. . . .. . .. . ....................... .... .. .. .. . .. . . ...... .. . ..... . .. .. ....... .. . ... . ....... ... ....... . . . ..... . ... .. . .... . . . . . . . ... . ........... ........ ... .... . . . . ..... . . ... .. . . ...... ... . . . ... . . . . . . ... . . . . . . ... . . . . .. . . .. . . . . . . . . . ... .... . . . .. . . . . ..
lowQualScore : 888 888 4 2 2222222 6666 9 7 000 000 0 6 5 55 8 0 88 0 55 8 33333333333333333333333 0000 77 99 99 7 00 3 7 444444 99 6 88888 1 99 22 8888888 99 2 888 1 1111111 000 6666666 4 7 0 55555 7 777 22 7 2222 2 2 5 7 5 0 7 000 0 00000000000 99999999 666 6666 4 1 7 7 33333 1 2 666 99 5 1 444444 000 2 2 5 000 2 3 0 3 0 0 000 7 0 3 0 3 5 555 5 0 0 0 00 5 0 00 0 5 5 0 0 0 0 0 0 555 3333 7 0 3 33 7 7 7 0 00
consensus : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--T-TT--GG--G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Reference ( family-138 ) : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--T-TT--GG--G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
gi|1 : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTAT-AACATA-GT-T--TTACAGTCAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGAT--CCGCAACATC--TG-ATATCATGGTTTTTTTATTCGCA-TGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACG--TCTG---ACAGAAAGTACATGTAT---ATACCA--T-TTTAAATATAATAATTTCATAA-CCACAATATCTACCTCA--T--A-TTGTTTA---TACAGTTTA--AAATACC-ACAT----AAACCTCGTGTGTTTTTTT-TTTGTA---CTTAACTTTGA-----------GT--GA--G-TGTG---TG----GGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGAACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGACTCGTGCTCAATACCCTTGACTGACCATTTTA-ACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTTATTCGCTTTGCTCAAACG-AAAATAAATCATTTATGTTCTTTTCAAAGTAAACTCGGGAAATTAAAG-ACAACAAGACATGGTATAGGAATTGTCAATTGCATTGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGA-TGC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTC-A-----------GTGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATAT
gi|10 : TATCATGTA-ATACAGACTGT-TCGC------------GTGCACCAAACCATTTACTATACA--ATACACATACA------CATATACTTTAAACG------TATAATGAGTGCA---TTTATTTTCTAATTCGCCTTGCTTAAAAGTAACATAAATCA-TCATCTTGTTAATACAGTCAGTTCAATAACTTAAGGTTTCACTAGATACGGTATAGCAGT--TCACTTGCATTGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCta
gi|11 : taacTTTATCACTCTCTTTGC---TTA---AACAAA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGATG----AATGA---ATACA-TGAAACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTT-GACATATAA-T--TTACAATGACAATGCACTAAACAATGTGTTA---------ccccgat
gi|12 : tcaaactatagatgatgacattatATAAACAAAATGAAATAAATTACAACATT-TTAAA-----------------CA--TC----------AA-------TAT---ACACCA--AATCCCTGTATGATTACTTCAAAAACCACAACATCAATCTCAT-TCAA-CTGTATA-----CATTTTACTGATCACCTGCATTTTTAATC----T-T-TCTCTTTATTTATGTCCCTGAACTTTGA-C--C-T--T-TT--TGCTG-TAGC---TGCCGGGAGA-TCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACAgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|13 : gccaTTCGTACCAAACGTTCTCAG-ACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATAT
gi|14 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaaTTTCTAATTCGCTTTGCATTTCATTTATC--ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAGGG----ATTTA---A---A-GAGAACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AATAT--TT-T--TCACAATAAAGATGCACAAAACGATCTATCA---------AA------------CATc
gi|15 : tatATATACTGACAG------ATGAG---GCTTGTGCTCTTTACCCTTGACTGAACA--TTACACATATGTGTATTCATTTTCTTTAGACCTGTATATATAATAAAAACATAGTTTATCATTTAAT--GCATT--TCAGA---AAAATA
gi|16 : tacataacatgactgacattgtaaggTAA---A---A-CAACACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTT-ACCATA-ATAT--TTACAATTAAAAT----ATAACGATCTGACA---------AA------------Ctt
gi|2 : gtaaagtactttattgttttaaatattaatttTT-TATGTA---CTTGGCATTGAAC--T-C--T-TTTCGG--ACTGTG---TG----AGGAATATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGACCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAGGAAGCTCGGTCTTCATACCCTTGACTAAACA--TAAC-C-----TGTATTGATTTGCTTTAAACC------TACAATAAACACA---TATATTTTCTAATTCGCTTTGCTCAAACG-AAAAT-----ATTTGTTTTCCTTTTAAAA-AAAATCGTGGAATAGAAA-AGAACAATACATGGTGTGCGA-TTGTCACTTACATTGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCT-ATTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTCATAATTT
gi|2 : aCATACAAAGGGTCCTT-GTACGCCAGTCTATACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACACataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|3 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatattttctaattcgctttgctcaaacgaaaatatttgttttccttttaaaaaaaatcgtggaatagaaaagaacaatacatggtgtgcgattgtcacttacattgccgttataatatcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaataTTTCTAATTCGCTATGC---TCA---AACGAA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAGGG----ACTTA---A---A-GGGAACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTAT-AACATA-TT-T--TTACAGTAAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAG--CTGCAACAGC--TG-ATACCATGGGATTTT-ATTTGCA-TGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTATA----CAAACTCAAATAAATAACAACCTCATTAAA--A-TGAC-C-----AACA--TCTG---ACAGAAAGT------AT---ATAC----T-TTCAAATATAATTACACAATAA-CCACACTATCTACTTCAT----A-CTGTATAATATACAGTTTA--ACATACC-ACAT----GCACACCAAGT-TGTCTTT-TTTGTA---CTGCTCTTGGA-C--CGC--TGTT--GG--G-TGGGGGTTG----GGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGACCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAACTCGTACTCTATACCCTTGACTGGACA--TTACAC------GTATTCGTTTACTTTAAACC------AACAATAAATACA---TTa
gi|4 : tgtATTTACTTTCTTTTCAAAGTAAACTTAGGG----AATGA---A---A-GAGAAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTAT-AACATA-GT-T--TTACAGCAAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGAT--CTGCAACAGG--TG-AAACCAGTTTATTTTTATTCGCA-TGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA----ATATACAAACTCAAATAAATAAAAACCTTATC-AA--AATGAC-C-----AACA--TCTG---ACAGAAA------GTAT---AAACCAACT-TTC-AATATAATAACTTTATAA-CCACAAAATCTACCTCA--T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCATGT-TGT-TTT-TTTGTA---CTTGATTTTGA-CCGC-T--T-TT--GG--G-TGGGAT-TG----CGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAATGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGACTCGTGCTCTATACCCTTGAATAAACA--CTACACATATATGTATTCATTTGCTGTAAACC------TAAAATAAATACA---T
gi|5 : TTTCTAATACGCTTTGC---TCA---AACGAA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAGG--------AC---A---A-GAGAACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTAT-AACATA--T-T--TTACAGTAAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGAT--CTGCAACAGC--TT-TTACCATGGACGTTTTATTTGCA-TAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATATATCTAC----TGAAATAAATTACAGTCTTATTAGA--AAGGTC-C-----ATCA--TCTG---ACAGAAAGT----GTAT---ACAAAC--T-TTCAAATATAATTACTTCATAA-CCACAATATCGATATCAT-TTGA-CTGTATA---TACAGTTTT--AATTACC-ACAT----AAACACCGTGT-TTTCTTC-TTTGTT---CTCTACTTTGA-C--A-TAGT-TT--GG--G-TGGGA--TG----GGGGATCATATGAAA-A---------------CAACGTAACTATTCGGCAAATGCAATGTCCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAGCTCTTGCTCTTTACCCTTGACTGAACA--TTACACGTATATGT
gi|6 : tatAA--AACGAT-CTATCAAACA--TCTG---ACAGGAAGT------GT---ATACCAACT-TTCAAAAATAGTTACTTCATAA--CACGATAACGACTTCATGT--AGTTATATA---TACAGTTTT--AAATACG-ACA-----AAACACCATTT-TTTCTTT-TTTATA---CTTTACTTTGA-C--CTC--T-TT--------TGGG---TG----GGG
gi|6 : GGG---GG----GGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGACCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGGCTCGCGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGTTTTAAACC------CATAATAAATACA---Ttnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|7 : aaaacgatctatcaaacatctgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnngTTTCTAATTAGCTTT-C---TCA---AACGAA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAAAG----AGTAA---A---A-GACTACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGT-AACATA----T--TTACATTAA--ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCAT-----ATGT-AGAATAACTGTAACAGCATTGTATTATATACAATTTT--CTCATAGTGAAATTCC--TGTTCTTGAACAGTT------ACAGTTCTCAATA-A---ACAAACTC--TTA---TATAATATTATTAGAATAAAGACTC-----AACAACTCAA---ACAGAAATT---TATA
gi|8 : tatTTCTGATTCGTTTTTT---CCT---A--GAA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCGGGTGTGGACAA---G---A-AAAAACAAGACATAGTATAA----------ACTTGC----CC--TATTAACATA-TT-TCTTTACAATACAAGTACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGAC--CTGCAATAGC--TG-GTTTCATctctaaaattcatctagaagagctaacttctaaaacca
gi|8 : tcCCTGCAATAGCTGGTTTCAT--C-GACAGTCAATATAAAAATTCGAATAAATT---ACTTTACCGAA--AATAAC-A-----CACA--TTCGTTTAC--AAATC---TATATTAAGTA-CG--T-TTCAATTATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|9 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacgaTTTCTAATTCGCTTTGC---TCA---AACAAA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAATGTT--AATGAGTTA---ATGAGAACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTAT-AACATA-GT-T--T-ACAGTAAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAAT--CTGCAACACC--TG-ATACCCTGGAGGTTTTATTCACA-CGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA-A---ACAAACTCATATAAATTACAACCTTAggta
blockSeqs : ATT TTT TTTATTT TGTG GTT TAC T T A CT T TA A CT G AAAGTGCAATAAAG CATG AG AA AT T GA T G GGTTTC AG C TATCT AT AT CTATCA AC T TTT TTTA TAA CCAACT C A A TTCA G ATA CT T TTTT A A G . C C A TCC A CCGCTG TCGGAC GGT CCGG A A T T AAACA GAA . A TGTATA TAG T C G AGT A T C T T A TTT G T A G T AT T A A T AA . C CT T . . A A A G T T ATA AGA T C T CA C G AA
blockSeqs : . . . TT . . . T A T . T . . G GATCCTCAGAG AT TA . . . TA T . . . A AATAT . AG TC . T . TCTA . CCAACT A . T TTTG . . . . . A A G . G C . . G CCGCTT TGCTG AT . A G . A . TTA . A . . T A G CG A . T . A T AG . . T . GTA C G . TG C
blockSeqs : . . . . . . . G A . . A . . A AA . AA . . . AC T . . . A ATAT . AC C . T . GTG . CCAAA A . T TGT . . . . . A G G . G C . . C CATAGT GGG A . . T . T . TTG . A . . . T . . .
blockSeqs : . . . . . . . G G . . T . . G AA . TG . . . AA . . . . G TA . AA C . T . GT . AACT A . G T . . . . . A A T . T C . . G ACTCT GGG . . . T . T . TTA . G . .
blockSeqs : . . . . . . . T G . . G . . T AA . AG . . . AG . . . . A A . AT C . A . GT . CGT A . G T . . . . . . . . . T . . . T CCTCT GGG . . . T . T . TTG . G . .
blockSeqs : . . . . . . . A T . . T . . T AT . T . . . . . . A . T A . C . G . CT . . . T CCTT . . . . . . . . . . . . .
blockSeqs : . . . . . . . G A . . G . . A AA . . . . . . . . . . . .
blockSeqs : . . . . G A . . . . . G AA
blockSeqs : . . . T . . . . . . .
blockSeqCons : GT***** CCAACT* CCTCT****** **
originalCons : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT---TGTAT---ATACCA--T-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGA-C--C-C--T-TT--GG--G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
finalCons : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT-----TAT---ATACCAACT-TTCAAATATAATTACTTCATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGACCTCT------TT--GG--G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Alignments
lowQualScore : 1111111 1111 11 22222222222222222222222 2222 111111 11111 1111111 22222222 1111 33333 111 1111 111 11111 1111111 222 1111 1 11111 111111 111 111 111 1 1 1 222 1 1 1 1 2222
lowQualScore : 888 888 0 0 6666666 5555 0 0 777 777 4 1 1 99 0 4 22 4 55 4 55555555555555555555555 0000 22 77 77 5 22 7 6 666666 77 3 88888 0 66 22 3333333 66 2 888 0 66666666 66 3 88 0 3 2222 2 5 5 1 11111 6 111 99 6 4444 3 2 2 6 1 1 5 000 1 0 22222 1111111 000 0000 1 5 5 1 44444 0 0 555 66 8 0 666666 000 3 1 2 555 3 7 1 7 1 1 444 0 2 7 1 3 5 111 5 1 1 1 22 5 1 22 1 5 5 1 1 1 1 1 1 444 9999 3 1 7 44 0 0 6 1 22
lowQualScore : ... ... . . ....... .... . . ... ... . . . .. . . .. . .. . ....................... .... .. .. .. . .. . . ...... .. . ..... . .. .. ....... .. . ... . ........ .. . .. . . .... . . . . ..... . ... .. . .... . . . . . . . ... . . ..... ....... ... .... . . . . ..... . . ... .. . . ...... ... . . . ... . . . . . . ... . . . . . . ... . . . . .. . . .. . . . . . . . . . ... .... . . . .. . . . . ..
lowQualScore : 888 888 4 2 2222222 6666 9 7 000 000 0 6 5 55 8 0 88 0 55 8 33333333333333333333333 0000 77 99 99 7 00 3 7 444444 99 6 88888 1 99 22 8888888 99 2 888 1 44444444 99 4 88 4 4 1111 1 7 7 0 55555 7 777 22 7 2222 2 2 5 7 5 0 7 000 0 7 33333 7777777 666 6666 4 1 7 7 33333 1 2 666 99 5 1 444444 000 2 2 5 000 2 3 0 3 0 0 000 7 0 3 0 3 5 555 5 0 0 0 00 5 0 00 0 5 5 0 0 0 0 0 0 555 3333 7 0 3 33 7 7 7 0 00
consensus : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT-----TATAT--ACCAANTTTCAAATATAA----TNACTTC-ATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGACCTC-T-TT--GG-G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
Reference ( family-138 ) : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAAGTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AACATA-NT-T--TTACAGTAAAGATGCACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATANGAGGAT--CTGCAACAGC--TG-ATACCATGGNNTTTTTATTCGCA-TGAAACACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACA--TCTG---ACAGAAAGT-----TATAT--ACCAACTTTCAAATATAA----TTACTTC-ATAA-CCACAATATCNACCTCAT-T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCGTGT-TTTCTTT-TTTGTA---CTTNACTTTGACCTC-T-TT--GG-G-TGGG---TG----GGGG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGACTGTATCGCACGAGTTGGCTCGTGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTAATTCGCTTTGCTCAAACG-AAAATAAATCATTTATNTTCTTTTTAAAGTAAANTCGNGAAATTAAAG-ANAACAAGACACGGTATAGGAGTTGTCACTTGCATTGCCGTTATAANATCGA-ACAAAAACAAAGAAAGGGCAATCTGATTGCTAATCTATTACNGATATTNAGATTCANTATNNAAACTATTCACCAACTGAACCACATGAACAGCGTGAGGTTCAAGTCTGATCCGAGNAANNTNTATAATATTATGCCCACANTATCAANACGACATATATCCCNGACAAACANGCAACATCTTGCACNTATATAGGCCNGTTTCNNCGTTTCGTACCAAACGTTCTC-G-ACGCCAGTCTGTGCCAANATGATTGCGTACTGTTTGATATACGATAGCAAACGACATACGTTTCAGTCAAACAGGTAACATTTACACTCATNTNNTAGCAATTTATAT
gi|1 : TTTCTAATTCGCTTTGC---TCA---AACGAA-------AATAAATCATTTATTTTCTTTTCAAATTAAACTCAGGG----AATAA---A---A-GAGAACAAGACATGGTATAAGA--ATTGTCACTTGCACTGCCGTTAT-AACATA-GT-T--TTACAGTCAAGATACACAAAACGATCTGTCA---------AA------------CATCCTGTCATA----ATAGGAGGAT--CCGCAACATC--TG-ATATCATGGTTTTTTTATTCGCA-TGAAGCACCCTTGTCCTGCAATGGCT------AT--CTGTCAATATATATACAAACTCAAATAAATTACAACCTTATCAAA--AATGAC-C-----AACG--TCTG---ACAGAAAGTACATGTATAT--ACCA--TTTTAAATATAA----TAATTTC-ATAA-CCACAATATCTACCTCA--T--A-TTGTTTA---TACAGTTTA--AAATACC-ACAT----AAACCTCGTGTGTTTTTTT-TTTGTA---CTTAACTTTGA-------GT--GA-G-TGTG---TG----GGAG-TCTTATGAAA-ATATGT-----GTAAACAACGTAACTATTTGGCAAACGCAATGAACTCGAATGGAGAGGGCCTACACTTATATCACTTATATACCGGCTGTATCGCACGAGTTGACTCGTGCTCAATACCCTTGACTGACCATTTTA-ACGTATATGTATTCATTTGCTTTAAACC------TATAATAAATACA---TTTATTTTCTTATTCGCTTTGCTCAAACG-AAAATAAATCATTTATGTTCTTTTCAAAGTAAACTCGGGAAATTAAAG-ACAACAAGACATGGTATAGGAATTGTCAATTGCATTGCCGTTATAACATCGA-ACAAAAACAAAGAACGGGCAA-CTGA-TGC-AATCTATTACCGATATTTAAATTCAGTATCTAAATTATTCACCAACTGAACCACATGAATAGTGTGAGGTTCAAGTCTAATCTGAGAAAAATGTATAATATTATGTTCACACTATCAATACGACATATATCCCTAACAAACATGCAACATTTTGCACGTATATAAGCCAATTTTCACGTTTCGTACCAAACGTTCTC-A-----------GTGCCAAAATGATTGTCTAGTGTCTGATATACGCTAGCAAACAACATACGTTTCAGTCAAA-AGGTAACATTTACATTCATTTTTTAGCAATTTATAT
gi|10 : TATCATGTA-ATACAGACTGT-TCGC------------GTGCACCAAACCATTTACTATACA--ATACACATACA------CATATACTTTAAACG------TATAATGAGTGCA---TTTATTTTCTAATTCGCCTTGCTTAAAAGTAACATAAATCA-TCATCTTGTTAATACAGTCAGTTCAATAACTTAAGGTTTCACTAGATACGGTATAGCAGT--TCACTTGCATTGCCGTTTTATAATTGAGACAAACAAATAGAAAGAGCta
gi|11 : taacTTTATCACTCTCTTTGC---TTA---AACAAA-------AATACATCATTTATTCACTTTTCAAAGTAAATTCGATG----AATGA---ATACA-TGAAACAATACATTATATAAGACTATTATTTCTTGGATTGTCGAGTT-GACATATAA-T--TTACAATGACAATGCACTAAACAATGTGTTA---------ccccgat
gi|12 : tcaaactatagatgatgacattatATAAACAAAATGAAATAAATTACAACATT-TTAAA-----------------CA--TC----------AA-------TATAC--ACCAAATCCCTG-TATGA----TTACTTC-AAAAACCACAACATCAATCTCAT-TCAA-CTGTATA-----CATTTTACTGATCACCTGCATTTTTAATC----T-T-TCTCTTTATTTATGTCCCTGAACTTTGACCTT-T-TT--GCTG-TAGC---TGCCGGGAGA-TCTAATTAAATATGTGTAAACAGTAAACAACGTAACTATTCGACAgtagctgaggagatcctgacgatctatatcctatggtatatcaatatttttta
gi|13 : gccaTTCGTACCAAACGTTCTCAG-ACGCCAGTTTGTGCCAACATGATTGCATACTATTTGATATACGATAGCAAATGACATACATTTCAGTCAAACAGGTATCATTTACACTCATGTAATAGCAATTTATAT
gi|14 : tgcatcatataacatgatttcataatgtgagaatagaagtacggtacaaTTTCTAATTCGCTTTGCATTTCATTTATC--ATTTATTTAACAAATCATTTATTTTCTTTACAAAGCAATCTGAGGG----ATTTA---A---A-GAGAACAATATATTGTATAAGA--ATTGTCACTTGCATTGCCGTTAT-AATAT--TT-T--TCACAATAAAGATGCACAAAACGATCTATCA---------AA------------CATc
gi|15 : tatATATACTGACAG------ATGAG---GCTTGTGCTCTTTACCCTTGACTGAACA--TTACACATATGTGTATTCATTTTCTTTAGACCTGTATATATAATAAAAACATAGTTTATCATTTAAT--GCATT--TCAGA---AAAATA
gi|16 : tacataacatgactgacattgtaaggTAA---A---A-CAACACACGACATGG-ACAATG--ATTGTCACTTGCTTTGCCGCTTT-ACCATA-ATAT--TTACAATTAAAAT----ATAACGATCTGACA---------AA------------Ctt
gi|2 : gtaaagtactttattgttttaaatattaatttTT-TATGTA---CTTGGCATTGAACTC-T-TTTCGG-ACTGTG---TG----AGGAATATGATGAAA-AAATGT-----GTAAGCTACATTACTATTCGGCAAATGCAATGACCTCGAATGGAGAGGGCCTACATAAATATCACTTATATACCGACTGTATTGCACGAGGAAGCTCGGTCTTCATACCCTTGACTAAACA--TAAC-C-----TGTATTGATTTGCTTTAAACC------TACAATAAACACA---TATATTTTCTAATTCGCTTTGCTCAAACG-AAAAT-----ATTTGTTTTCCTTTTAAAA-AAAATCGTGGAATAGAAA-AGAACAATACATGGTGTGCGA-TTGTCACTTACATTGCCGTTATAATATCAA-ACACTAACAAAGTAAGGACAATCT-ATTACTAATCTATTACAGATATTAAGATTCATTATAAAAACTATTTATTAACTGAACCACATAAACAGCA-AAGGTTCAAGTCTGATCCAAGCAACTTTTAT-ATA-TATGCCCACAATATCAAAACGACATATATCCCAGACAAACAGACAACATCTTGCACTTATATAGGTCTGTTTCATAATTT
gi|2 : aCATACAAAGGGTCCTT-GTACGCCAGTCTATACCAAGA-GAGTTTGTACTGTTTAATATACGATAGATAATGGCATACATTTCTGTCAAACAGGTAATATTTACACataaatagcagtaaatatactcacacacatatacaatacatacaaagggtccttgtacgccagtctataccaagagagtttgtactgtttaatatacgatagataatggcatacatttctgtcaaacaggtaatatttacaca
gi|3 : atttatgtacttggcattgaactcttttcggactgtgtgaggaatatgatgaaaaaatgtgtaagctacattactattcggcaaatgcaatgacctcgaatggagagggcctacataaatatcacttatataccgactgtattgcacgaggaagctcggtcttcatacccttgactaaacataacctgtattgatttgctttaaacctacaataaacacatatattttctaattcgctttgctcaaacgaaaatatttgttttccttttaaaaaaaatcgtggaatagaaaagaacaatacatggtgtgcgattgtcacttacattgccgttataatatcaaacactaacaaagtaaggacaatctattactaatctattacagatattaagattcattataaaaactatttattaactgaaccacataaacagcaaaggttcaagtctgatccaagcaacttttatatatatgcccacaatatcaaaacgacatatatcccagacaaacagacaacatcttgcacttatataggtctgtttcataatttataaatagcagtaaatatactcacacacatatacaataTTTCTAATTCGCTATGC---TCA---AACGAA-------AATAAATCATTTAGGTTCTTTTCAAATTAAACTCAGGG----ACTTA---A---A-GGGAACAAGACATGGTATAGGA--ATTGTCACTTGCA-----GTTAT-AACATA-TT-T--TTACAGTAAAAATACACAAAAC--TCTGTCA---------AA------------CATCCTGTCATA----ATCAGAGGAG--CTGCAACAGC--TG-ATACCATGGGATTTT-ATTTGCA-TGAATCATCCTTGTCCTGCAATGGCT------AT--CTGTCACTATA----CAAACTCAAATAAATAACAACCTCATTAAA--A-TGAC-C-----AACA--TCTG---ACAGAAAGT------ATAT--AC----TTTCAAATATAA----TTACACA-ATAA-CCACACTATCTACTTCAT----A-CTGTATAATATACAGTTTA--ACATACC-ACAT----GCACACCAAGT-TGTCTTT-TTTGTA---CTGCTCTTGGACCGC-TGTT--GG-G-TGGGGGTTG----GGGG-TCC-ATGAAA-ATATGT-----GTAAACAACGTAACAATTCGGCAACCGCAATGACCTCGAATGGAGCAGGCCTACACTTGTATCACTTATATACCGACTGTATCGTACAAGTTAACTCGTACTCTATACCCTTGACTGGACA--TTACAC------GTATTCGTTTACTTTAAACC------AACAATAAATACA---TTa
gi|4 : tgtATTTACTTTCTTTTCAAAGTAAACTTAGGG----AATGA---A---A-GAGAAAAATACATGGTATAGGA--AATTTCACTTGTATTGCCGTTAT-AACATA-GT-T--TTACAGCAAAGATGCACAAAACAATCTGTTT---------AT------------CATCCTGTCATA----AAATAAGGAT--CTGCAACAGG--TG-AAACCAGTTTATTTTTATTCGCA-TGAAACACCCTTGTCCTGTAATGGCT------AT--CTGTCA----ATATACAAACTCAAATAAATAAAAACCTTATC-AA--AATGAC-C-----AACA--TCTG---ACAGAAAG------TATAA--ACCAACTTTC-AATATAA----TAACTTT-ATAA-CCACAAAATCTACCTCA--T--A-CTGTATA---TACAGTTTA--AAATACC-ACAT----AAACACCATGT-TGT-TTT-TTTGTA---CTTGATTTTGACCGCTT-TT--GG-G-TGGGAT-TG----CGGT-TCTTATGAAA-ATATGT-----GTAAACATCTTAATTATTTGGCAAACGCAATGACAATGAATGGAGAGGGCCTACACTTGTATCACTTATATACCGGCTGTATCGCACGATTTGACTCGTGCTCTATACCCTTGAATAAACA--CTACACATATATGTATTCATTTGCTGTAAACC------TAAAATAAATACA---T
gi|5 : TTTCTAATACGCTTTGC---TCA---AACGAA-------AATAAATAATTCAATTTCTTTTCAAGACAAATTTAGG--------AC---A---A-GAGAACAAAGCATGGTATA-GT--AGTGTCACTTGCGTTGTCGTTAT-AACATA--T-T--TTACAGTAAAGATTCACAAAGCGATCGGTGA---------AA------------CATCCTGTCATACATGATAAAAGGAT--CTGCAACAGC--TT-TTACCATGGACGTTTTATTTGCA-TAAAACACCCTTGTTCTACGATGGCT------AT--CTGTCAATATATCTAC----TGAAATAAATTACAGTCTTATTAGA--AAGGTC-C-----ATCA--TCTG---ACAGAAAGT------GTAT--ACAAACTTTCAAATATAA----TTACTTC-ATAA-CCACAATATCGATATCAT-TTGA-CTGTATA---TACAGTTTT--AATTACC-ACAT----AAACACCGTGT-TTTCTTC-TTTGTT---CTCTACTTTGACATAGT-TT--GG-G-TGGGA--TG----GGGGATCATATGAAA-A---------------CAACGTAACTATTCGGCAAATGCAATGTCCTCGAATGGAGAGGGCCTACCCATGTATCACTTCTAAACAGACTGTATCGCACTAGTTAGCTCTTGCTCTTTACCCTTGACTGAACA--TTACACGTATATGT
gi|6 : tatAA--AACGAT-CTATCAAACA--TCTG---ACAGGAAGT------GTAT--ACCAACTTTCAAAAATAG----TTACTTC-ATAA--CACGATAACGACTTCATGT--AGTTATATA---TACAGTTTT--AAATACG-ACA-----AAACACCATTT-TTTCTTT-TTTATA---CTTTACTTTGACCTC-T-TT-------TGGG---TG----GGG
gi|6 : GGG---GG----GGGG-TCTTATGAAA-ATATAT-----GTAAACAACGTAACTATTTGATAAGCGTAAGGACCTCGAATGGAGTGGGACTACACTTGTATCACATATATAGCCACTGTAGTGCACAAGTTGGCTCGCGCTCTATACCCTTGACTGAACA--TTACACGTATATGTATTCATTTGTTTTAAACC------CATAATAAATACA---Ttnnnnnnnnnnnnnnnnnnnnnnnnnnggggggggggtcttatgaaaatatatgtaaacaacgtaactatttgataagcgtaaggacctcgaatggagtgggactacacttgtatcacatatatagccactgtagtgcacaagttggctcgcgctctatacccttgactgaacattacacgtatatgtattcatttgttttaaacccataataaatacat
gi|7 : aaaacgatctatcaaacatctgacaggaagtgtataccaactttcaaaaatagttacttcataacacgataacgacttcatgtagttatatatacagttttaaatacgacaaaacaccattttttcttttttatactttactttgacctcttttgggtggggtnnnnnnnnnnnnnnnnnnnnnnnnnngTTTCTAATTAGCTTT-C---TCA---AACGAA-------AATAAAGCATTTATCTTC-TTTCACAATAAACTCAAAG----AGTAA---A---A-GACTACAAGACATTTTATATGAT-AGTGTCTCTTGCATTGCCATTGT-AACATA----T--TTACATTAA--ATTCAAATAACAATTTGTCAGATCCTCAGAG------------CATCTGGTCAT-----ATGT-AGAATAACTGTAACAGCATTGTATTATATACAATTTT--CTCATAGTGAAATTCC--TGTTCTTGAACAGTT------ACAGTTCTCAATA-A---ACAAACTC--TTA---TATAATATTATTAGAATAAAGACTC-----AACAACTCAA---ACAGAAATT-----TATAC--TCTAAAATTCATCTAGAAGAGCTAACTTCTAAAA-CCA
gi|8 : tatTTCTGATTCGTTTTTT---CCT---A--GAA-------AA-AAAT-----GTTTTCTTTTCATAGTACATTCCGGGTGTGGACAA---G---A-AAAAACAAGACATAGTATAA----------ACTTGC----CC--TATTAACATA-TT-TCTTTACAATACAAGTACACACAAGGATCTGTCA---------AAAGTGCAATAAAGCAGGCTGCCATAAT--ATATGACGAC--CTGCAATAGC--TG-GTTTCAT
gi|8 : tcCCTGCAATAGCTGGTTTCAT--C-GACAGTCAATATAAAAATTCGAATAAATT---ACTTTACCGAA--AATAAC-A-----CACA--TTCGTTTAC--AAATC-----TATATTAAGTACGTTTCAATTATcgacagtcaatataaaaattcgaataaattactttaccgaaaataacacacattcgtttacaaatctatattaagtacgtttcaattatggta
gi|9 : tcttctgattcgttttttcctagaaaaaaatgttttcttttcatagtacattccgggtgtggacaagaaaaaacaagacatagtataaacttgccctattaacatatttctttacaatacaagtacacacaaggatctgtcaaaagtgcaataaagcaggctgccataatatatgacgaTTTCTAATTCGCTTTGC---TCA---AACAAA-------AATAAATCATTTCTTTTCTTTTCAAAGTAAACTCAATGTT--AATGAGTTA---ATGAGAACAATACATGGTATAAGA--ATTGTCATTTGCATTGCTGTTAT-AACATA-GT-T--T-ACAGTAAAGATGCACAAAGCGATCTGTCA---------AA------------CATCCTGTCATA----ATAAGAAAAT--CTGCAACACC--TG-ATACCCTGGAGGTTTTATTCACA-CGAAACACCCTTTTCCTGCAATGGCT------AT--TTGTCAATA-A---ACAAACTCATATAAATTACAACCTTAggta