lowQualScore : 1111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 2222222222 11 1 11111 1 44444444444444444444 1 1 2222222222222222222222222 1 44444444 1 2222 111111 2222222 22222222222222 111 111111111 11 11111111 3333333333333 11111111111111 1 222222 555555555555555555555555555555555555 777777 1 1 3333333 1 111
lowQualScore : 5555555555 33 4 2 55555 0 8 22222222222222222222 9 6 5 1 2 0000000000000000000000000 0 0 6 33333333 8 0 1 3333 666666 0 8888888 5 55555555555555 66 1 222 222222222 33 44444444 4 1 3333333333333 3 55555555555555 4 4 0 4 444444 5 0 777777777777777777777777777777777777 8 4 4 4 8 3 333333 1 33 3 3 3333333 2 2 111 2 888 8 6 5
lowQualScore : .......... .. . . ..... . . .................... . . . . . ......................... . . . ........ . . . .... ...... . ....... . .............. .. . ... ......... .. ........ . . ............. . .............. . . . . ...... . . .................................... . . . . . . ...... . .. . . ....... . . ... . ... . . .
lowQualScore : 0000000000 22 0 8 00000 0 2 88888888888888888888 0 0 0 5 0 2222222222222222222222222 5 7 7 55555555 6 7 6 0000 444444 3 9999999 7 88888888888888 99 1 222 000000000 55 55555555 0 6 8888888888888 0 77777777777777 0 4 8 4 777777 0 1 000000000000000000000000000000000000 0 4 4 4 2 4 000000 9 44 1 6 2222222 2 3 777 2 555 2 0 0
consensus : TGTTTNATTTA----TTTT-ATTNAAAAA--A-GCAA-CAAC-------T-GATTTTA----GTCCAGCAAACAAACGCGTGTGTGT----ACATCCG--CT-GG--GTAAATGCGC-CTGAAA-A-TANT-CCAAATTTGATTGATGAA---ATTAAAACAAAAC------AAATG------TAGTT-TTT--------ATG--NAAAC--TGTTCGACTCAGTTATAATNATTAGTTTATATTTAT--------T-GACATAATT--AACA-GTTTATCAA---CG-GTC-----GAAAAA-GTGT-TTAA-ACG---NTGG-TTTAACACAACGCAAAA----CA-A--CAATGACGT--CA-CNAATTNT---TGTGTTGC-TG-CAAGATA-AACNTTC----TCCCTGCCGATAAAGCAAACGTTTATCTTACC--CGCTTTATTANGTAGAATAAT---ACATAATGATATGACAAACA
Reference ( gi|2 ) : TGTTTACTTTG----TTTT-ATTTACAAA--A-GCAA-CGAC-------T-GATTCCG----GTCCATCAGACCAACACGTGGATAT----ACACCTGATCTTGG--GTAAACGCGC-TTGAAA-ACTTGT-CCAAATGTGATTGATGAT---ATTAAAACAAAAC------AAATG------AAGTT-TTT--------ATG--GAAAC--TGTTCGACTCAGTTATGATAATCAATTTATGTTTAT--------T-GACATATTT--AAGA-ATGTATTAA---CG-GCC-----GAAAAA-GTGT-TAAA-ACG---ATGG-TTTAACACAACGCAAAAAAACCAAACCCAATGACAT--CA-GAAGTTAT---TGTGCTGC-TG-CAAGATA-AGCATTCAAAGTCCCTGCAGATAAAGCAAATGTTTATCTAACCCACGCTTTATTATGTTGAATAAT---ATATAGTGGTGTGATAAACACAGAATTATATGAATAAATATCACGAAGCGTTAATGTATGCTCTGAATGTCATATGATCATATAACATGTTTTTAACATGAAACATTTCAATAATGTTACCATGGAAGTATTCATTGTA
gi|3 : TGTTTTATTTA----TTTTCATTTAAAAC--A-TCAA-CAACAGTTTTCT-GATTTTA----GTTCAGAAAACAAACTCATGTGTGT----TCA-------TTGGCAGTAAAAGTGCCTTGAAATAGTT---CCAAATTTGATGGATGAAGAAATTAAAACAAAAC------AAATG------CAGTTCTTT--------ACA--TAAAC--TGTTTGACT--GTTATAACTATC-ATTTATATCTAT--------T-GGCATAATT--AACT-GTTTATCAA---CA-GT-------AACAATGTGT-TTAA-ACA---CAGG-TTTTATGCAAAGCAAAAA---------CAATGATGT--CA-TCAATTTG---TGTGTTGC-TG-TTTGATA-A--ATCT----TCCCTACCAATAAAGCAAACATTTATTTTACCC-TACTTTATTATATAGAATAAT---
gi|7 : atttatcaggtgaagtagaggaaacaatgaagcacaggacttggtgagtgttaaattgttttcaagcagaattatgtcttgatttgtgTATTTA--TCA----TTTT-ATTTAGAAATTA-ACAAACAAA-------T-GATTTTA----GTCCAGCAAACAAACTCATGTGTGT----A-----AATCT-----------GTGC-CTGGAA-A-TAGTTCCAAATTTGATTGATGAT---AATAACACAAAAC------AGATGCCCAACAAATC-GT---------AT-----AAC--AAATTGACTCTGTTAT---AACTA--TTAT--TTAT--------T-GAGATAATT--AAGAGATA-ATCAA---TA-GTA-----AAACAA-GTGTATAAACAC----AGGG-TTTAACACATAGCAAA-----------TAATGATGT--CA-TAAATGTG---TGTGTTAC-TC-CAAGACA-AACg
gi|6 : tttcgagtcaacatgataaatttggcactaacatcgtattcTGTTTTATTTG----TTT--ATTAAAAAA--AAGAAA-CCAC-------TTGAATGCGTTTTGTCCCGCAAGCAAATGCATGACTGTGTTTACGTCTG--C---G--GTAAATGCAC-CTGAAA-A-TAAT-TCAAAGCTCATTGATGAA---ATTAAAACAAAAC------ACATG------CAGTT-TTT--------TTAACAAAAC--TGTTAGACT---TTATTATAATTA---TAAGCTT---------------ATATTTAAAAAA-AT-TATCAG---CA-GTC-----GAAAAA-cctt
gi|1 : gaaaatattttttccaaggtacgtgctaattattttcgagccaaacctgttcaatgttaggctatcaggcactgatatattttcgatttaaaatgtcattattagcgTACTTTAAGGACTTT-GCTAATAAA--A-GCAA-CAAC-------T-AATTTAA----GTCCATCCAACAAATGTGTGTGTGC----ACAACCG-----GG--GTAAATGTGC-C-GAGA-ATTATT-CTAAATCTGATAAATGAA---ATTAAAACAAAAC------AAATA------TAGTT-TTT--------ATG--GAAAC--TATTCAGCTTAGCCATGACATTTAGTATAAAATTAT--------T-GACATAATA--AACA-GTTTAGCAA---CG-ATC-----GGAAAA-GTGT-TCAA-ATG----TGG----AACACAACGCAAAA-----------AATGACGT--CA-TCAG-TAT---TAAGTTGT-TG-CAAGATA-A
gi|5 : aaaggacatatgttctataaattgttacaattttcagaaacggaaggatgtccattaaattctaccgctgaaaaaataattcaaaagcttagttccaaattactgattatcttcattcagataaatattgacacacacgttatattgccatttcaatttaaccattacttcctcaggtttctg----ACATCTG--CT-----GTAAAAGTGC-TTGAAA-G-TAGTTCCAAATTTGATTGATGAA---ATGAAAACAAAAC------ATATG------TAGTT-TGT--------ATG--AAAAC--TGTTTGACTCGGTCATAATTACTAGGTTATATTTTT--------T-GATATAATT--AACA---GTATCAA--------T-----GAAATA-ATAT-TTAA-ACT---TGGG-TTTAATACAACATAATAG---CAAA------GGTAT--CA-----TTATTTGTGTGTTAC-TG-CAAGATA-AACCT------TCCATGCCAATAATGAAAA-G--TAACTTACCGCTGCTTTACTATGTGCAATAAT---ACATAATGTTATGACAAAccttccgtgtcgagtttattatgttgaataatacacaatgatatgtataatatttttatatggtgtaaagattaattcatatcaagcgtgggaatgagtatgatagtcacgtggtcctttaaaggaagactgttattgatcaataaagcttttcaactgggaacaaaatatgacacaaatttggaattatattgtat
gi|4 : catcataaaatattcatgactttgcacattgtatataaaaacaacaAATGCCT-TTGAAA-ATATTT-CCAAAT-----------------TAAAACAAAAC------AATT----------TT-TTTTTTTTTAAATG--GAAAC--TGTTCCTGTCAGTTACGATTATAAGCTTATATTTAT--------TTGACACAGTT----------CATCTA---CA-GTC-----GATAAA-GTGT-TTAA-ATG---TGGG-TTTAACACAATGCAAA-----CA----CATTGATGT--CG-TCAATTG----TGTGTTGC-TG-CAAGATA-AACCT------TCCCTGTCGAAAACGCTCAAGTTTATCTTAC
gi|8 : atgcctgatagtctaaaatttatcagatgaggtaaagaaaaaaatttgagccggacttgacatttgtcatgtcaattattataatatatgcacattttttttttataatatgcaaaaatgcaaaggcaaagaaatgcatatgtgtacatctgcattcT-TCAAAGTTTATTGATGAA---ATTAAAACAAAACATTGTTAAATG------TTGTT-TTT---------TG--TAAAC--TATTCAACTAATTTATAATTATTAGTTTATATTCATAAATTTAAT-GACATAATT--TACA-GT---TTAA---CA-GCT-----GACAAttta
gi|9 : atttattaggtgaggtagagagaaaaaatgttttcaatgagaaccttatcaattttagactatcaggtactaatgtggtattatatttttcatgtcattatataattttgttgtatttttatttaaatgagaacagcaaacatctgtatgtatgttcatctgtgccaaaaaatatTT--------GTG--AAAGCAATGTTTAACTGA--TATCTTA--CAATTTAT--CTGG--------T-GAAATA-----GAGA-AAATAATAAGCACAAGCCTTTGAGAAAAG-ATGT-TTAG--TG----TGGATTTAACACAACTCA-------CGAA--CAAGGACGT--CATCAA--TATG--TGTG-TG--TGTCAATATATAGGATAAACATTCCCTGCAGATAAAACAAAAGCTGATCTAAC---CGATTTATTCCGTAGACTATT---ACATAATGATATAAAAAACAcaat
gi|15 : atgtatttaatgagtaaaaggcaatgatgaccagaatgCTTAGTTATAATAAGAAGTTT-TAGTTAC--------T-GAAATAATT--AATA-GTTTATCAA---GG-GTC-----AAAAAA-GTAT-TCAA-ACG---AT
gi|13 : AATTTATATTTAT--------T-GACATAATT--AACA-GTTTACCAA---CG-GTC-----GAAAAA-GTGT-TAAA-ACGTGTGTGG-T--AGCACAACACAAAA----CATA------GACGT--CA-CCAATTTG---TGTGCTGC-TG-CAAGATG-AACATTTCCAGTC------GATAAA---------------------ACTTTATTATGTTTAATAAT---A
gi|12 : aagattattg---CG-GTC-----AAAAAG-ATCT-TTAA-ACG---TTGA-TTTAACACAACACAAAc
gi|14 : ttttcatTGAAATAACA-AAGGTTATA--CATGTTGCCTG-CAAGAAA-AACCTTC------CCTGCTGATAAAGCTTATGTTTATCTTACCCA-GCTTTATCAAGTAGAATATTCCAATA---TGATATGATAAttttgtgttgctgcaaaacaaacgttccttaccgctaaagtaaacgtttatgttaccacctctttattaagtagaataatacataatgatatgacaaaaaggaaacgcgttctatgcacttttttatcgtaatgcaccattctcaggaactaaatggcatctg
gi|12 : ttACAA--CA-CAAATT-T---TGTGTTGC-TG-CAAAACA-AACGTTC------CTTACCGCTAAAGTAAACGTTTATGTTACCACCTCTTTATTAAGTAGAATAAT---ACATAATGATATGACAAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTTTACCTGGGATAATTTGCCTAGATTAAGTAGTCGCGTTTCAAAGTGTCCTAGGATAGATTTTCTATGAATAGTAACAACTTTCAGACAATGAGAACGACTGTGAAACTCTACAACTGAAAAAAAGCCCAAAAGTGAAGTACCGAATCATCTTAACTCAGATAAATACTGACACAATCATTATTATGTTATTTCTACCTGACAATTGTTTGCTCATGTGTTAGTATTTTATGTACTTT
Unaligned ( gi|11 ): CATCGATATCTATCTGGGCAAGTTTGCCTAAGTTCAGTATAGATGATCTATAAAGAGTAAAAACTTTTAGGAACCGAAGGACGTTCTACCGCTCAAAATATAAAGAAATAGTTCTACCGTTGAATTCCCAACCACCGATTATCCTAATTCAGATAAATCCTTACACAAACTTTATTATGTCATTTCTACTTGAACATTGTTTGCCCAGGTTTCAGTACTTCAAGTACTTAGATT
Unaligned ( gi|16 ): GAATACCATATTAGTGCTTGATAAACTAAAATTTATCAGGTGATGAAGAGAAAAAAATAGTTCCGAGCCGAG
Alignments
lowQualScore : 111 1111 3333333333333333 55555555555 1 111111 11111 11111 1111 11111111 11111 44444444444444 11111111 11111 3333333 222222222222222222222222
lowQualScore : 22 111 6 1 1 1111 6 1 1111111111111111 33 1 77 66 99999999999 0 5 5 66 5 0 888 0 444444 22222 5 11111 2222 00 44 1 55 3 44444444 4 3 99999 1 2 00000000000000 33 11111111 4 44444 1 8888888 777777777777777777777777 1 2 1
lowQualScore : .. ... . . . .... . . ................ .. . .. .. ........... . . . .. . . ... . ...... ..... . ..... .... .. .. . .. . ........ . . ..... . . .............. .. ........ . ..... . ....... ........................ . . .
lowQualScore : 00 777 7 0 8 2222 7 5 8888888888888888 55 4 99 99 22222222222 4 0 0 00 0 2 888 5 444444 55555 0 00000 9999 55 88 0 88 2 55555555 0 6 11111 9 9 99999999999999 99 33333333 0 00000 0 4444444 444444444444444444444444 0 6 4
consensus : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAATGCGCCTGAAAA-T-A-NTTCCAAATTTGATTGAT---GAAATTAAAACAAAAC------AAATGC-----AGTT-TTT----ATG--G-AAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACG---NNGGTTTAACACAACGCAAAA----C-AA---CAATGACGTCATCAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
Reference ( family-128 ) : TGTTTNATTTAT---TTT-ATTNAAAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCCG---C-TGGGTAAATGCGCCTGAAAA-T-A-NT-CCAAATTTGATTGAT---GAAATTAAAACAAAAC------AAATGT-----AGTT-TTT----ATG--N-AAACTGTTCGACTCAGTTATAATNATT-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACG---NTGGTTTAACACAACGCAAAA----C-AA---CAATGACGTCACNAATTNTTGTGT-TGC-----TGCAAGATAAACNTTC----TCCCTGCCGATAAAGCAAACGTTTATCTTAC--C--C-GCTTTATTANGTAGAATAATACATAATGATATGACAAACA
gi|1 : AC---TTT-GCTAATAAA--A-GCAA-CAAC-------T-AA-----TTTAAGTCCATCCAACAAATGTGTG--TGTGC--ACAACCG------GGGTAAATGTGCC-GAGAA-TTA-TT-CTAAATCTGATAAAT---GAAATTAAAACAAAAC------AAATAT-----AGTT-TTT----ATG--G-AAACTATTCAGCTTAGCCATGACATTT-AGTATAAAATTAT--------T-GACATAATAAACAGTTTAGCAACGATCGGAAAA-GTGTTCAAATG----TGG---AACACAACGCAAAA------------AATGACGTCATCAG-TATTAAGT-TGT-----TGCAAGAT-AACCT------TCCGTGTCG----AG-------------------------TTTATTATGTTGAATAATACACAATGATATG
gi|12 : aaaggacatatgttctataaattgttacaattttcagaaacggaaggatgtccattaaattctaccgctgaaaaaataattcaaaagcttagttccaaattactgattatcttcattcagataaatattgacacacacgttatattgccatttcaatttaaccattacttcctcaggtttctgtactttaaggTTT-TCATCGGTCAAAAAG-ATCTTTAAACG---TTGATTTAACACAACACAAA----------------------------TTTTGTGT-TGC-----TGCAAAACAAACGT------TCCTTACCGCTAAAGTAAACGTTTATGTTACCAC--C-TCTTTATTAAGTAGAATAATACATAATGATATGACAAAtataatatttttatatggtgtaaagattaattcatatcaagcgtgggaatgagtatgatagtcacgtggtcctttaaaggaagactgttattgatcaataaagcttttcaactgggaacaaaatatgacacaaatttggaattatattgtat
gi|13 : ATTATTGAATTTATATTTAT--------T-GACATAATTAACAGTTTACCAACGGTCGAAAAA-GTGTTAAAACGTGTGTGG--TAGCACAACACAAAA----C--A---TA--GACGTCACCAATTTGTGTGC-TGC-----TGCAAGATGAACAT------TTCCAGTCGATAAA------------------------ACTTTATTATGTTTAATAATACaaggaaacgcgttctatgcacttttttatcgtaatgcaccattctcaggaactaaatggcatctg
gi|14 : aagTGT-TGCC----TGCAAGAAAAACCTTC------CCTGCTGATAAAGCTTATGTTTATCTTAC--C--CAGCTTTATCAAGTAGAATATTCCAATATGATATGATAA
gi|15 : tttgaaataacaaaggttatacaCTTAGTTATAATAAGA-AGTTT-TAGTTAC--------T-GAAATAATTAATAGTTTATCAAGGGTCAAAAAA-GTATTCAAACG---AT
gi|2 : TGTTTACTTTGT---TTT-ATTTACAAA--A-GCAA-CGAC-------T-GA-----TTCCGGTCCATCAGACCAACACGTG--GATAT--ACACCTGATCT-TGGGTAAACGCGCTTGAAAACT-T-GT-CCAAATGTGATTGAT---GATATTAAAACAAAAC------AAATGA-----AGTT-TTT----ATG--G-AAACTGTTCGACTCAGTTATGATAATC-AATTTATGTTTAT--------T-GACATATTTAAGAATGTATTAACGGCCGAAAAA-GTGTTAAAACG---ATGGTTTAACACAACGCAAAAAAACC-AAACCCAATGACATCAGAAGTTATTGTGC-TGC-----TGCAAGATAAGCATTCAAAGTCCCTGCAGATAAAGCAAATGTTTATCTAAC--CCAC-GCTTTATTATGTTGAATAATATATAGTGGTGTGATAAACA
gi|3 : TGTTTTATTTAT---TTTCATTTAAAAC--A-TCAA-CAACAGTTTTCT-GA-----TTTTAGTTCAGAAAACAAACTCATG--TGTGT--TCATTGG---C---AGTAAAAGTGCCTTGAAA-T-AGTT-CCAAATTTGATGGATGAAGAAATTAAAACAAAAC------AAATGC-----AGTTCTTT----ACA--T-AAACTGTTTGACT--GTTATAACTATC-A-TTTATATCTAT--------T-GGCATAATTAACTGTTTATCAACAGT--AACAATGTGTTTAAACA---CAGGTTTTATGCAAAGCAAA-------AA---CAATGATGTCATCAATTTGTGTGT-TGC-----TGTTTGATAAATCT------TCCCTACCAATAAAGCAAACATTTATTTTAC--C--CTACTTTATTATATAGAATAATcagaattatatgaataaatatcacgaagcgttaatgtatgctctgaatgtcatatgatcatataacatgtttttaacatgaaacatttcaataatgttaccatggaagtattcattgta
gi|4 : atttatcaggtgaagtagaggaaacaatgaagcacaggacttggtgagtgttaaattgttttcaagcagaattatgtcttgatttgtgTTTTTTTTAT---AAT-ATGCAAAAA--T-GCAA-------------------------AG----GCAAAGAAATGCATA--TGTGT--ACATCTG---CAT---TCAATGCCTTTGAAAA-T-A-TTTCCAAATT-----------------AAAACAAAAC------AATTTT-----TTTT-TTTTTAAATG--G-AAACTGTTCCTGTCAGTTACGATTATA-AGCTTATATTTAT--------TTGACA-------CAGTTCATCTACAGTCGATAAA-GTGTTTAAATG---TGGGTTTAACACAATGC-AAA----C--A---CATTGATGTCGTCAATTG-TGTGT-TGC-----TGCAAGATAAACCT------TCCCTGTCGAAAACGCTCAAGTTTATCTTAC--g
gi|5 : atgcctgatagtctaaaatttatcagatgaggtaaagaaaaaaatttgagccggacttgacatttgtcatgtcaattattataatatatgcacatt--ACATCTG---C-TG--TAAAAGTGCTTGAAAG-T-A-GTTCCAAATTTGATTGAT---GAAATGAAAACAAAAC------ATATGT-----AGTT-TGT----ATG--A-AAACTGTTTGACTCGGTCATAATTACT-AGGTTATATTTTT--------T-GATATAATTAACAG--TATCAA----TGAAATA-ATATTTAAACT---TGGGTTTAATACAA--CATAA----T-AG---CAAAGGTATCATT-ATTTGTGTGT-TAC-----TGCAAGATAAACCT------TCCATGCCAATAATG-AAAAG--TAACTTACCGC--T-GCTTTACTATGTGCAATAATACATAATGTTATGACAAAttta
gi|6 : catcataaaatattcatgactttgcacattgtatataaaaacaacaTGTTTTATTTGT---TT--ATTAAAAAA--AAGAAA-CCAC-------TTGAATGCGTTTT-GTCCCGCAAGCAAATGCATGACTGTGTTTACGTCTG---C---GGTAAATGCACCTGAAAA-T-A-AT-TCAAAGCTCATTGAT---GAAATTAAAACAAAAC------ACATGC-----AGTT-TTT----TTAACA-AAACTGTTAGACTTTATTATAATTATA-AGCTTATATTTA----------------AA--AAAA--TTATCAGCAGTCGAAAAA-
gi|7 : gaaaatattttttccaaggtacgtgctaattattttcgagccaaacctgttcaatgttaggctatcaggcactgatatattttcgatttaaaatgtcattattagcgTATTCTATTTATCATTTT-ATTTAGAAATTA-ACAAACAAA-------T-GA-----TTTTAGTCCAGCAAACAAACTCATG--TGTGT--AAATC---------------TGTGCCTGGAAA-T-A-GTTCCAAATTTGATTGAT---GATAATAACACAAAAC------AGATGCCCAACAAAT-CGT----ATA--ACAAATTG----ACTCTGTTATAACTATT-A-------TTTAT--------T-GAGATAATTAAGAGATAATCAATAGTAAAACAA-GTGTATAAACAC--AGGGTTTAACACATAGCA---------AA---TAATGATGTCATAAATGTGTGTGT-TAC-----TCCAAGACAAACCCT
gi|8 : tttcgagtcaacatgataaatttggcactaacatcgCAGCAAACATCTGTATG--TATGT--TCATC---------------TGTGCCAAAAAA-T-A-TT-TCAAAGTTTATTGAT---GAAATTAAAACAAAACATTGTTAAATGT-----TGTT-TTT-----TG--T-AAACTATTCAACTAATTTATAATTATT-AGTTTATATTCATAAATTTAAT-GACATAATTTACAGTTTAACAGCt
gi|9 : atttattaggtgaggtagagagaaaaaatgttttcaatgagaaccttatcaattttagactatcaggtactaatgtggtattatatttttcatgtcattatataattttgttgtatttttatttaaatgagaaGAAAAG-ATGTTTAG-TG---TGGATTTAACACAACTCA-------CGAA---CAAGGACGTCATCAATATGTGTGTGTGTCAATATATAGGATAAACATTC------CCTGCAGATAAAACAAAAGCTGATCT-AA--C--C-GATTTATTCCGTAGACTATTACATAATGATATAAAAAACAtgacaacaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTTACCTGGGATAATTTGCCTAGATTAAGTAGTCGCGTTTCAAAGTGTCCTAGGATAGATTTTCTATGAATAGTAACAACTTTCAGACAATGAGAACGACTGTGAAACTCTACAACTGAAAAAAAGCCCAAAAGTGAAGTACCGAATCATCTTAACTCAGATAAATACTGACACAATCATTATTATGTTATTTCTACCTGACAATTGTTTGCTCATGTGTTAGTATTTTATGTACTTT
Unaligned ( gi|11 ): CATCGATATCTATCTGGGCAAGTTTGCCTAAGTTCAGTATAGATGATCTATAAAGAGTAAAAACTTTTAGGAACCGAAGGACGTTCTACCGCTCAAAATATAAAGAAATAGTTCTACCGTTGAATTCCCAACCACCGATTATCCTAATTCAGATAAATCCTTACACAAACTTTATTATGTCATTTCTACTTGAACATTGTTTGCCCAGGTTTCAGTACTTCAAGTACTTAGATT
Unaligned ( gi|16 ): GAATACCATATTAGTGCTTGATAAACTAAAATTTATCAGGTGATGAAGAGAAAAAAATAGTTCCGAGCCGAG
Alignments
lowQualScore : 111 1111 3333333333333333 555555555 111111 111111 1111111111 11111111 444444444444 11111 111111 222222222222222222222222
lowQualScore : 1 111 6 1 1 1111 6 1 1111111111111111 33 1 77 66 333333333 5 2 0 1 1 2 0 9999 444444 333333 5 4444444444 44 88 0 44444444 4 3 22 4 4 2 111111111111 66 1 4 1 1 5 4 44444 8 555555 0 444444444444444444444444 1 1
lowQualScore : . ... . . . .... . . ................ .. . .. .. ......... . . . . . . . .... ...... ...... . .......... .. .. . ........ . . .. . . . ............ .. . . . . . . ..... . ...... . ........................ . .
lowQualScore : 0 777 7 0 0 2222 7 5 8888888888888888 55 4 99 99 444444444 4 2 4 0 4 5 2 2222 444444 666666 0 4444444444 88 99 7 55555555 0 6 00 4 4 9 000000000000 66 4 0 3 0 0 0 00000 7 777777 1 888888888888888888888888 0 4
consensus : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGCGGG-T-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
Reference ( family-128 ) : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAATGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGNNGG-T-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
gi|1 : AC---TTT-GCTAATAAA--A-GCAA-CAAC-------T-AA-----TTTAAGTCCATCCAACAAATGTGTG--TGTGC--ACAACCG------GGGTAAATGTGCC-GAGAATTATTCTAAATCTGATAAATGAA---ATTAAAACAAAACA------AATAT-----AGTT-TTT----ATG--GAAACTATTCAGCTTAGCCATGACATTT-AGTATAAAATTAT--------T-GACATAATAAACAGTTTAGCAACGATCGGAAAA-GTGTTCAAATGTGG------AACACAACGCAAAA------------AATGACGTCAT-CAGTAT-TAAGT-TGT-----TGCAAGATAA--CCT-----TCCGTGTCG----AG-------------------------TTTATTATGTTGAATAATACACAATGATATG
gi|12 : aaaggacatatgttctataaattgttacaattttcagaaacggaaggatgtccattaaattctaccgctgaaaaaataattcaaaagcttagttccaaattactgattatcttcattcagataaatattgacacacacgttatattgccatttcaatttaaccattacttcctcaggtttctgtactttaaggTTT-TCATCGGTCAAAAAG-ATCTTTAAACGTTGA-T-TTAACACAACACAAA----------------------------TTT-TGTGT-TGC-----TGCAAAACAAACGTT------CCTTACCGCTAAAGTAAACGTTTATGTTAC--CACC-TCTTTATTAAGTAGAATAATACATAATGATATGACAAAtataatatttttatatggtgtaaagattaattcatatcaagcgtgggaatgagtatgatagtcacgtggtcctttaaaggaagactgttattgatcaataaagcttttcaactgggaacaaaatatgacacaaatttggaattatattgtat
gi|13 : ATTATTGAATTTATATTTAT--------T-GACATAATTAACAGTTTACCAACGGTCGAAAAA-GTGTTAAAACGTGTG-TGGTAGCACAACACAAAA----C--A---TA--GACGTCAC-CAATTTGTGTGC-TGC-----TGCAAGATGAACATT-----TCCA-GTCGATAAA------------------------ACTTTATTATGTTTAATAATACaaggaaacgcgttctatgcacttttttatcgtaatgcaccattctcaggaactaaatggcatctg
gi|14 : aagAAA----T-AA---CAA--AGGTTATACA-------TGT-TGCC----TGCAAGAAAAACCTT------CCCTGCTGATAAAGCTTATGTTTATCTTAC--C--CAGCTTTATCAAGTAGAATATTCCAATATGATATGATAA
gi|15 : tttgCTTAGTTATAATAAGA-AGTTT-TAGTTAC--------T-GAAATAATTAATAGTTTATCAAGGGTCAAAAAA-GTATTCAAACG
gi|2 : TGTTTACTTTGT---TTT-ATTTACAAA--A-GCAA-CGAC-------T-GA-----TTCCGGTCCATCAGACCAACACGTG--GATAT--ACACCTGATCT-TGGGTAAACGCGCTTGAAAACTTGTCCAAATGTGATTGATGAT---ATTAAAACAAAACA------AATGA-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATGATAATC-AATTTATGTTTAT--------T-GACATATTTAAGAATGTATTAACGGCCGAAAAA-GTGTTAAAACGATGG-T-TTAACACAACGCAAAAAAACC-AAACCCAATGACATCAG-AAGTTATTGTGC-TGC-----TGCAAGATAAGCATTCAAAGTCCCTGCAGATAAAGCAAATGTTTATCTAAC--CCAC-GCTTTATTATGTTGAATAATATATAGTGGTGTGATAAACAat
gi|3 : TGTTTTATTTAT---TTTCATTTAAAAC--A-TCAA-CAACAGTTTTCT-GA-----TTTTAGTTCAGAAAACAAACTCATG--TGTGT--TCATTGG---C---AGTAAAAGTGCCTTGAAATAGTTCCAAATTTGATGGATGAAGAAATTAAAACAAAACA------AATGC-----AGTTCTTT----ACA--TAAACTGTTTGACT--GTTATAACTATC-A-TTTATATCTAT--------T-GGCATAATTAACTGTTTATCAACAGT--AACAATGTGTTTAAACACAGG-T-TTTATGCAAAGCAAAA-------A---CAATGATGTCAT-CAATTTGTGTGT-TGC-----TGTTTGATAAATC-T-----TCCCTACCAATAAAGCAAACATTTATTTTAC--C--CTACTTTATTATATAGAATAATcagaattatatgaataaatatcacgaagcgttaatgtatgctctgaatgtcatatgatcatataacatgtttttaacatgaaacatttcaataatgttaccatggaagtattcattgta
gi|4 : atttatcaggtgaagtagaggaaacaatgaagcacaggacttggtgagtgttaaattgttttcaagcagaattatgtcttgatttgtgTTTTTTTTAT---AAT-ATGCAAAAA--T-GCAA-------------------------AG----GCAAAGAAATGCATA--TGTGT--ACATCTG---CAT---TCAATGCCTTTGAAAATATTTCCAAATT-----------------AAAACAAAACA------ATTTT-----TTTT-TTTTTAAATG--GAAACTGTTCCTGTCAGTTACGATTATA-AGCTTATATTTAT--------TTGACA-------CAGTTCATCTACAGTCGATAAA-GTGTTTAAATGTGGG-T-TTAACACAATGC-AAA----C--A---CATTGATGTCGT-CAA-TTGTGTGT-TGC-----TGCAAGATAAACC-T-----TCCCTGTCGAAAACGCTCAAGTTTATCTTAC--g
gi|5 : atgcctgatagtctaaaatttatcagatgaggtaaagaaaaaaatttgagccggacttgacatttgtcatgtcaattattataatatatgcacatt--ACATCTG---C-TG--TAAAAGTGCTTGAAAGTAGTTCCAAATTTGATTGATGAA---ATGAAAACAAAACA------TATGT-----AGTT-TGT----ATG--AAAACTGTTTGACTCGGTCATAATTACT-AGGTTATATTTTT--------T-GATATAATTAACAG--TATCAA----TGAAATA-ATATTTAAACTTGGG-T-TTAATACAA--CATAA----T-AG---CAAAGGTATCAT-T-ATTTGTGTGT-TAC-----TGCAAGATAAACC-T-----TCCATGCCAATAATG-AAAAG--TAACTTACCGC--T-GCTTTACTATGTGCAATAATACATAATGTTATGACAAAttta
gi|6 : catcataaaatattcatgactttgcacattgtatataaaaacaacaTGTTTTATTTGT---TT--ATTAAAAAA--AAGAAA-CCAC-------TTGAATGCGTTTT-GTCCCGCAAGCAAATGCATGACTGTGTTTACGTCTG---C---GGTAAATGCACCTGAAAATAATTC-AAAGCTCATTGATGAA---ATTAAAACAAAACA------CATGC-----AGTT-TTT----TTAACAAAACTGTTAGACTTTATTATAATTATA-AGCTTATATTTA----------------AA--AAAA--TTATCAGCAGTCGAAAAA-
gi|7 : gaaaatattttttccaaggtacgtgctaattattttcgagccaaacctgttcaatgttaggctatcaggcactgatatattttcgatttaaaatgtcattattagcgTATTCTATTTATCATTTT-ATTTAGAAATTA-ACAAACAAA-------T-GA-----TTTTAGTCCAGCAAACAAACTCATG--TGTGT--AAATCTG---T------------GCCTGGAAATAGTTCCAAATTTGATTGATGAT---AATAACACAAAACA------GATGCCCAACAAAT-CGT----AT-----AACAAATTGACTCTGTTATAACTAT--------TATTTAT--------T-GAGATAATTAAGAGATAATCAATAGTAAAACAA-GTGTATAAACACAGGGT-TTAACACATAGCAAA------------TAATGATGTCAT-AAATGTGTGTGT-TAC-----TCCAAGACAAACCCT-----T
gi|8 : tttcgagtcaacatgataaatttggcactaacatcgCAGCAAACATCTGTATG--TATGT--TCATCTG---T------------GCCAAAAAATATTTCAAAGTTT-ATTGATGAA---ATTAAAACAAAACATTGTTAAATGT-----TGTT-TTT-----TG--TAAACTATTCAACTAATTTATAATTATT-AGTTTATATTCATAAATTTAAT-GACATAATTTACAGTTTAACAGC
gi|9 : atttattaggtgaggtagagagaaaaaatgttttcaatgagaaccttatcaattttagactatcaggtactaatgtggtattatatttttcatgtcattatataattttgttgtatttttatttaaatgagaaGAAAAG-ATGTTTAG-TGTGGA-T-TTAACACAACTCA-------CGAA---CAAGGACGTCAT-CAATATGTGTGTGTGTCAATATATAGGATAAACATT------CCCTGCAGATAAAACAAAAGCTGATC-TAA--C--C-GATTTATTCCGTAGACTATTACATAATGATATAAAAAACAtgacaacaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTTACCTGGGATAATTTGCCTAGATTAAGTAGTCGCGTTTCAAAGTGTCCTAGGATAGATTTTCTATGAATAGTAACAACTTTCAGACAATGAGAACGACTGTGAAACTCTACAACTGAAAAAAAGCCCAAAAGTGAAGTACCGAATCATCTTAACTCAGATAAATACTGACACAATCATTATTATGTTATTTCTACCTGACAATTGTTTGCTCATGTGTTAGTATTTTATGTACTTT
Unaligned ( gi|11 ): CATCGATATCTATCTGGGCAAGTTTGCCTAAGTTCAGTATAGATGATCTATAAAGAGTAAAAACTTTTAGGAACCGAAGGACGTTCTACCGCTCAAAATATAAAGAAATAGTTCTACCGTTGAATTCCCAACCACCGATTATCCTAATTCAGATAAATCCTTACACAAACTTTATTATGTCATTTCTACTTGAACATTGTTTGCCCAGGTTTCAGTACTTCAAGTACTTAGATT
Unaligned ( gi|16 ): GAATACCATATTAGTGCTTGATAAACTAAAATTTATCAGGTGATGAAGAGAAAAAAATAGTTCCGAGCCGAG
Alignments
lowQualScore : 111 1111 3333333333333333 555555555 111111 111111 1111111111 11111111 444444444444 11111 11111111 222222222222222222222222
lowQualScore : 1 111 6 1 1 1111 6 1 1111111111111111 33 1 77 66 333333333 4 2 0 1 1 2 0 9999 444444 333333 5 4444444444 44 88 0 44444444 4 3 77 4 2 111111111111 66 1 4 1 1 5 4 44444 55555555 0 444444444444444444444444 1 1
lowQualScore : . ... . . . .... . . ................ .. . .. .. ......... . . . . . . . .... ...... ...... . .......... .. .. . ........ . . .. . . ............ .. . . . . . . ..... ........ . ........................ . .
lowQualScore : 0 777 7 0 0 2222 7 5 8888888888888888 55 4 99 99 444444444 5 2 4 0 4 5 2 2222 444444 666666 0 4444444444 88 99 7 55555555 0 6 99 4 9 000000000000 66 4 0 3 0 0 0 00000 44444444 1 888888888888888888888888 0 4
consensus : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
Reference ( family-128 ) : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
gi|1 : AC---TTT-GCTAATAAA--A-GCAA-CAAC-------T-AA-----TTTAAGTCCATCCAACAAATGTGTG--TGTGC--ACAACCG------GGGTAAATGTGCC-GAGAATTATTCTAAATCTGATAAATGAA---ATTAAAACAAAACA------AATAT-----AGTT-TTT----ATG--GAAACTATTCAGCTTAGCCATGACATTT-AGTATAAAATTAT--------T-GACATAATAAACAGTTTAGCAACGATCGGAAAA-GTGTTCAAATGT-GG-----AACACAACGCAAAA------------AATGACGTCAT-CAGTAT-TAAGT-TGT-----TGCAAGATAA--CCT-----TCCGTGTCG----AG-------------------------TTTATTATGTTGAATAATACACAATGATATG
gi|12 : aaaggacatatgttctataaattgttacaattttcagaaacggaaggatgtccattaaattctaccgctgaaaaaataattcaaaagcttagttccaaattactgattatcttcattcagataaatattgacacacacgttatattgccatttcaatttaaccattacttcctcaggtttctgtactttaaggTTT-TCATCGGTCAAAAAG-ATCTTTAAACGT-TGAT-TTAACACAACACAAA----------------------------TTT-TGTGT-TGC-----TGCAAAACAAACGTT------CCTTACCGCTAAAGTAAACGTTTATGTTAC--CACC-TCTTTATTAAGTAGAATAATACATAATGATATGACAAAtataatatttttatatggtgtaaagattaattcatatcaagcgtgggaatgagtatgatagtcacgtggtcctttaaaggaagactgttattgatcaataaagcttttcaactgggaacaaaatatgacacaaatttggaattatattgtat
gi|13 : ATTATTGAATTTATATTTAT--------T-GACATAATTAACAGTTTACCAACGGTCGAAAAA-GTGTTAAAACGT-GTGTGGTAGCACAACACAAAA----C--A---TA--GACGTCAC-CAATTTGTGTGC-TGC-----TGCAAGATGAACATT-----TCCA-GTCGATAAA------------------------ACTTTATTATGTTTAATAATACaaggaaacgcgttctatgcacttttttatcgtaatgcaccattctcaggaactaaatggcatctg
gi|14 : aagAAA----T-AA---CAA--AGGTTATACA-------TGT-TGCC----TGCAAGAAAAACCTT------CCCTGCTGATAAAGCTTATGTTTATCTTAC--C--CAGCTTTATCAAGTAGAATATTCCAATATGATATGATAA
gi|15 : tttgCTTAGTTATAATAAGA-AGTTT-TAGTTAC--------T-GAAATAATTAATAGTTTATCAAGGGTCAAAAAA-GTATTCAAACG
gi|2 : TGTTTACTTTGT---TTT-ATTTACAAA--A-GCAA-CGAC-------T-GA-----TTCCGGTCCATCAGACCAACACGTG--GATAT--ACACCTGATCT-TGGGTAAACGCGCTTGAAAACTTGTCCAAATGTGATTGATGAT---ATTAAAACAAAACA------AATGA-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATGATAATC-AATTTATGTTTAT--------T-GACATATTTAAGAATGTATTAACGGCCGAAAAA-GTGTTAAAACGA-TGGT-TTAACACAACGCAAAAAAACC-AAACCCAATGACATCAG-AAGTTATTGTGC-TGC-----TGCAAGATAAGCATTCAAAGTCCCTGCAGATAAAGCAAATGTTTATCTAAC--CCAC-GCTTTATTATGTTGAATAATATATAGTGGTGTGATAAACAat
gi|3 : TGTTTTATTTAT---TTTCATTTAAAAC--A-TCAA-CAACAGTTTTCT-GA-----TTTTAGTTCAGAAAACAAACTCATG--TGTGT--TCATTGG---C---AGTAAAAGTGCCTTGAAATAGTTCCAAATTTGATGGATGAAGAAATTAAAACAAAACA------AATGC-----AGTTCTTT----ACA--TAAACTGTTTGACT--GTTATAACTATC-A-TTTATATCTAT--------T-GGCATAATTAACTGTTTATCAACAGT--AACAATGTGTTTAAACAC-AGGT-TTTATGCAAAGCAAAA-------A---CAATGATGTCAT-CAATTTGTGTGT-TGC-----TGTTTGATAAATC-T-----TCCCTACCAATAAAGCAAACATTTATTTTAC--C--CTACTTTATTATATAGAATAATcagaattatatgaataaatatcacgaagcgttaatgtatgctctgaatgtcatatgatcatataacatgtttttaacatgaaacatttcaataatgttaccatggaagtattcattgta
gi|4 : atttatcaggtgaagtagaggaaacaatgaagcacaggacttggtgagtgttaaattgttttcaagcagaattatgtcttgatttgtgTTTTTTTTAT---AAT-ATGCAAAAA--T-GCAA-------------------------AG----GCAAAGAAATGCATA--TGTGT--ACATCTG---CAT---TCAATGCCTTTGAAAATATTTCCAAATT-----------------AAAACAAAACA------ATTTT-----TTTT-TTTTTAAATG--GAAACTGTTCCTGTCAGTTACGATTATA-AGCTTATATTTAT--------TTGACA-------CAGTTCATCTACAGTCGATAAA-GTGTTTAAATGT-GGGT-TTAACACAATGC-AAA----C--A---CATTGATGTCGT-CAA-TTGTGTGT-TGC-----TGCAAGATAAACC-T-----TCCCTGTCGAAAACGCTCAAGTTTATCTTAC--g
gi|5 : atgcctgatagtctaaaatttatcagatgaggtaaagaaaaaaatttgagccggacttgacatttgtcatgtcaattattataatatatgcacatt--ACATCTG---C-TG--TAAAAGTGCTTGAAAGTAGTTCCAAATTTGATTGATGAA---ATGAAAACAAAACA------TATGT-----AGTT-TGT----ATG--AAAACTGTTTGACTCGGTCATAATTACT-AGGTTATATTTTT--------T-GATATAATTAACAG--TATCAA----TGAAATA-ATATTTAAACTT-GGGT-TTAATACAA--CATAA----T-AG---CAAAGGTATCAT-T-ATTTGTGTGT-TAC-----TGCAAGATAAACC-T-----TCCATGCCAATAATG-AAAAG--TAACTTACCGC--T-GCTTTACTATGTGCAATAATACATAATGTTATGACAAAttta
gi|6 : catcataaaatattcatgactttgcacattgtatataaaaacaacaTGTTTTATTTGT---TT--ATTAAAAAA--AAGAAA-CCAC-------TTGAATGCGTTTT-GTCCCGCAAGCAAATGCATGACTGTGTTTACGTCTG---C---GGTAAATGCACCTGAAAATAATTC-AAAGCTCATTGATGAA---ATTAAAACAAAACA------CATGC-----AGTT-TTT----TTAACAAAACTGTTAGACTTTATTATAATTATA-AGCTTATATTTA----------------AA--AAAA--TTATCAGCAGTCGAAAAA-
gi|7 : gaaaatattttttccaaggtacgtgctaattattttcgagccaaacctgttcaatgttaggctatcaggcactgatatattttcgatttaaaatgtcattattagcgTATTCTATTTATCATTTT-ATTTAGAAATTA-ACAAACAAA-------T-GA-----TTTTAGTCCAGCAAACAAACTCATG--TGTGT--AAATCTG---T------------GCCTGGAAATAGTTCCAAATTTGATTGATGAT---AATAACACAAAACA------GATGCCCAACAAAT-CGT----AT-----AACAAATTGACTCTGTTATAACTAT--------TATTTAT--------T-GAGATAATTAAGAGATAATCAATAGTAAAACAA-GTGTATAAACACAGGGT-TTAACACATAGCAAA------------TAATGATGTCAT-AAATGTGTGTGT-TAC-----TCCAAGACAAACCCT-----T
gi|8 : tttcgagtcaacatgataaatttggcactaacatcgCAGCAAACATCTGTATG--TATGT--TCATCTG---T------------GCCAAAAAATATTTCAAAGTTT-ATTGATGAA---ATTAAAACAAAACATTGTTAAATGT-----TGTT-TTT-----TG--TAAACTATTCAACTAATTTATAATTATT-AGTTTATATTCATAAATTTAAT-GACATAATTTACAGTTTAACAGC
gi|9 : atttattaggtgaggtagagagaaaaaatgttttcaatgagaaccttatcaattttagactatcaggtactaatgtggtattatatttttcatgtcattatataattttgttgtatttttatttaaatgagaaGAAAAG-ATGTTTAG-TGT-GGAT-TTAACACAACTCA-------CGAA---CAAGGACGTCAT-CAATATGTGTGTGTGTCAATATATAGGATAAACA-T-----TCCCTGCAGATAAAACAAAAGCTGATC-TAA--C--C-GATTTATTCCGTAGACTATTACATAATGATATAAAAAACAtgacaacaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTTACCTGGGATAATTTGCCTAGATTAAGTAGTCGCGTTTCAAAGTGTCCTAGGATAGATTTTCTATGAATAGTAACAACTTTCAGACAATGAGAACGACTGTGAAACTCTACAACTGAAAAAAAGCCCAAAAGTGAAGTACCGAATCATCTTAACTCAGATAAATACTGACACAATCATTATTATGTTATTTCTACCTGACAATTGTTTGCTCATGTGTTAGTATTTTATGTACTTT
Unaligned ( gi|11 ): CATCGATATCTATCTGGGCAAGTTTGCCTAAGTTCAGTATAGATGATCTATAAAGAGTAAAAACTTTTAGGAACCGAAGGACGTTCTACCGCTCAAAATATAAAGAAATAGTTCTACCGTTGAATTCCCAACCACCGATTATCCTAATTCAGATAAATCCTTACACAAACTTTATTATGTCATTTCTACTTGAACATTGTTTGCCCAGGTTTCAGTACTTCAAGTACTTAGATT
Unaligned ( gi|16 ): GAATACCATATTAGTGCTTGATAAACTAAAATTTATCAGGTGATGAAGAGAAAAAAATAGTTCCGAGCCGAG
Alignments
lowQualScore : 111 1111 3333333333333333 555555555 111111 111111 1111111111 11111111 444444444444 11111 11111111 222222222222222222222222
lowQualScore : 1 111 6 1 1 1111 6 1 1111111111111111 33 1 77 66 333333333 4 2 0 1 1 2 0 9999 444444 333333 5 4444444444 44 88 0 44444444 4 3 77 4 2 111111111111 66 1 4 1 1 5 4 44444 55555555 0 444444444444444444444444 1 1
lowQualScore : . ... . . . .... . . ................ .. . .. .. ......... . . . . . . . .... ...... ...... . .......... .. .. . ........ . . .. . . ............ .. . . . . . . ..... ........ . ........................ . .
lowQualScore : 0 777 7 0 0 2222 7 5 8888888888888888 55 4 99 99 444444444 5 2 4 0 4 5 2 2222 444444 666666 0 4444444444 88 99 7 55555555 0 6 99 4 9 000000000000 66 4 0 3 0 0 0 00000 44444444 1 888888888888888888888888 0 4
consensus : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
Reference ( family-128 ) : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
gi|1 : AC---TTT-GCTAATAAA--A-GCAA-CAAC-------T-AA-----TTTAAGTCCATCCAACAAATGTGTG--TGTGC--ACAACCG------GGGTAAATGTGCC-GAGAATTATTCTAAATCTGATAAATGAA---ATTAAAACAAAACA------AATAT-----AGTT-TTT----ATG--GAAACTATTCAGCTTAGCCATGACATTT-AGTATAAAATTAT--------T-GACATAATAAACAGTTTAGCAACGATCGGAAAA-GTGTTCAAATGT-GG-----AACACAACGCAAAA------------AATGACGTCAT-CAGTAT-TAAGT-TGT-----TGCAAGATAA--CCT-----TCCGTGTCG----AG-------------------------TTTATTATGTTGAATAATACACAATGATATG
gi|12 : aaaggacatatgttctataaattgttacaattttcagaaacggaaggatgtccattaaattctaccgctgaaaaaataattcaaaagcttagttccaaattactgattatcttcattcagataaatattgacacacacgttatattgccatttcaatttaaccattacttcctcaggtttctgtactttaaggTTT-TCATCGGTCAAAAAG-ATCTTTAAACGT-TGAT-TTAACACAACACAAA----------------------------TTT-TGTGT-TGC-----TGCAAAACAAACGTT------CCTTACCGCTAAAGTAAACGTTTATGTTAC--CACC-TCTTTATTAAGTAGAATAATACATAATGATATGACAAAtataatatttttatatggtgtaaagattaattcatatcaagcgtgggaatgagtatgatagtcacgtggtcctttaaaggaagactgttattgatcaataaagcttttcaactgggaacaaaatatgacacaaatttggaattatattgtat
gi|13 : ATTATTGAATTTATATTTAT--------T-GACATAATTAACAGTTTACCAACGGTCGAAAAA-GTGTTAAAACGT-GTGTGGTAGCACAACACAAAA----C--A---TA--GACGTCAC-CAATTTGTGTGC-TGC-----TGCAAGATGAACATT-----TCCA-GTCGATAAA------------------------ACTTTATTATGTTTAATAATACaaggaaacgcgttctatgcacttttttatcgtaatgcaccattctcaggaactaaatggcatctg
gi|14 : aagAAA----T-AA---CAA--AGGTTATACA-------TGT-TGCC----TGCAAGAAAAACCTT------CCCTGCTGATAAAGCTTATGTTTATCTTAC--C--CAGCTTTATCAAGTAGAATATTCCAATATGATATGATAA
gi|15 : tttgCTTAGTTATAATAAGA-AGTTT-TAGTTAC--------T-GAAATAATTAATAGTTTATCAAGGGTCAAAAAA-GTATTCAAACG
gi|2 : TGTTTACTTTGT---TTT-ATTTACAAA--A-GCAA-CGAC-------T-GA-----TTCCGGTCCATCAGACCAACACGTG--GATAT--ACACCTGATCT-TGGGTAAACGCGCTTGAAAACTTGTCCAAATGTGATTGATGAT---ATTAAAACAAAACA------AATGA-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATGATAATC-AATTTATGTTTAT--------T-GACATATTTAAGAATGTATTAACGGCCGAAAAA-GTGTTAAAACGA-TGGT-TTAACACAACGCAAAAAAACC-AAACCCAATGACATCAG-AAGTTATTGTGC-TGC-----TGCAAGATAAGCATTCAAAGTCCCTGCAGATAAAGCAAATGTTTATCTAAC--CCAC-GCTTTATTATGTTGAATAATATATAGTGGTGTGATAAACAat
gi|3 : TGTTTTATTTAT---TTTCATTTAAAAC--A-TCAA-CAACAGTTTTCT-GA-----TTTTAGTTCAGAAAACAAACTCATG--TGTGT--TCATTGG---C---AGTAAAAGTGCCTTGAAATAGTTCCAAATTTGATGGATGAAGAAATTAAAACAAAACA------AATGC-----AGTTCTTT----ACA--TAAACTGTTTGACT--GTTATAACTATC-A-TTTATATCTAT--------T-GGCATAATTAACTGTTTATCAACAGT--AACAATGTGTTTAAACAC-AGGT-TTTATGCAAAGCAAAA-------A---CAATGATGTCAT-CAATTTGTGTGT-TGC-----TGTTTGATAAATC-T-----TCCCTACCAATAAAGCAAACATTTATTTTAC--C--CTACTTTATTATATAGAATAATcagaattatatgaataaatatcacgaagcgttaatgtatgctctgaatgtcatatgatcatataacatgtttttaacatgaaacatttcaataatgttaccatggaagtattcattgta
gi|4 : atttatcaggtgaagtagaggaaacaatgaagcacaggacttggtgagtgttaaattgttttcaagcagaattatgtcttgatttgtgTTTTTTTTAT---AAT-ATGCAAAAA--T-GCAA-------------------------AG----GCAAAGAAATGCATA--TGTGT--ACATCTG---CAT---TCAATGCCTTTGAAAATATTTCCAAATT-----------------AAAACAAAACA------ATTTT-----TTTT-TTTTTAAATG--GAAACTGTTCCTGTCAGTTACGATTATA-AGCTTATATTTAT--------TTGACA-------CAGTTCATCTACAGTCGATAAA-GTGTTTAAATGT-GGGT-TTAACACAATGC-AAA----C--A---CATTGATGTCGT-CAA-TTGTGTGT-TGC-----TGCAAGATAAACC-T-----TCCCTGTCGAAAACGCTCAAGTTTATCTTAC--g
gi|5 : atgcctgatagtctaaaatttatcagatgaggtaaagaaaaaaatttgagccggacttgacatttgtcatgtcaattattataatatatgcacatt--ACATCTG---C-TG--TAAAAGTGCTTGAAAGTAGTTCCAAATTTGATTGATGAA---ATGAAAACAAAACA------TATGT-----AGTT-TGT----ATG--AAAACTGTTTGACTCGGTCATAATTACT-AGGTTATATTTTT--------T-GATATAATTAACAG--TATCAA----TGAAATA-ATATTTAAACTT-GGGT-TTAATACAA--CATAA----T-AG---CAAAGGTATCAT-T-ATTTGTGTGT-TAC-----TGCAAGATAAACC-T-----TCCATGCCAATAATG-AAAAG--TAACTTACCGC--T-GCTTTACTATGTGCAATAATACATAATGTTATGACAAAttta
gi|6 : catcataaaatattcatgactttgcacattgtatataaaaacaacaTGTTTTATTTGT---TT--ATTAAAAAA--AAGAAA-CCAC-------TTGAATGCGTTTT-GTCCCGCAAGCAAATGCATGACTGTGTTTACGTCTG---C---GGTAAATGCACCTGAAAATAATTC-AAAGCTCATTGATGAA---ATTAAAACAAAACA------CATGC-----AGTT-TTT----TTAACAAAACTGTTAGACTTTATTATAATTATA-AGCTTATATTTA----------------AA--AAAA--TTATCAGCAGTCGAAAAA-
gi|7 : gaaaatattttttccaaggtacgtgctaattattttcgagccaaacctgttcaatgttaggctatcaggcactgatatattttcgatttaaaatgtcattattagcgTATTCTATTTATCATTTT-ATTTAGAAATTA-ACAAACAAA-------T-GA-----TTTTAGTCCAGCAAACAAACTCATG--TGTGT--AAATCTG---T------------GCCTGGAAATAGTTCCAAATTTGATTGATGAT---AATAACACAAAACA------GATGCCCAACAAAT-CGT----AT-----AACAAATTGACTCTGTTATAACTAT--------TATTTAT--------T-GAGATAATTAAGAGATAATCAATAGTAAAACAA-GTGTATAAACACAGGGT-TTAACACATAGCAAA------------TAATGATGTCAT-AAATGTGTGTGT-TAC-----TCCAAGACAAACCCT-----T
gi|8 : tttcgagtcaacatgataaatttggcactaacatcgCAGCAAACATCTGTATG--TATGT--TCATCTG---T------------GCCAAAAAATATTTCAAAGTTT-ATTGATGAA---ATTAAAACAAAACATTGTTAAATGT-----TGTT-TTT-----TG--TAAACTATTCAACTAATTTATAATTATT-AGTTTATATTCATAAATTTAAT-GACATAATTTACAGTTTAACAGC
gi|9 : atttattaggtgaggtagagagaaaaaatgttttcaatgagaaccttatcaattttagactatcaggtactaatgtggtattatatttttcatgtcattatataattttgttgtatttttatttaaatgagaaGAAAAG-ATGTTTAG-TGT-GGAT-TTAACACAACTCA-------CGAA---CAAGGACGTCAT-CAATATGTGTGTGTGTCAATATATAGGATAAACA-T-----TCCCTGCAGATAAAACAAAAGCTGATC-TAA--C--C-GATTTATTCCGTAGACTATTACATAATGATATAAAAAACAtgacaacaat
blockSeqs : A CAT C T C TTA A G AGTTTTCTGA CG G AC TT ATCTTGGG C C T C G AGAA TTGTTA CCCAAC C TTAAATGG TA TG AAATTTAA T T CA G C AAAACCAAACC AT C A A T G G CAATA TTCAAAGT TAAACGTTTATGTTACCACCT A T
blockSeqs : T . . T A AA . A TTGAATGCG TA A . . CAG A T G C G T . A . TTAACA CA A . . . T . C ATAA AT G . G T T . C TTT CAAATGTTTATCTAACCCACG T T
blockSeqs : A . . C A A . C TGA TA A . . CAT T C T C G A . C . ATGG CA C . . . T . C ATAG TT C . A T G . . CTT CTTATGTTTATCTTACCCAG A C
blockSeqs : A . . A A A . A TGA A A . . CTG A T G C C A . T . ACAT CG C . . . A . A CGAA AA T . A T G . . TT CAAACATTTATTTTACCCTA T A
blockSeqs : . . T G T . . . T A . . CGG T C A C G T . T . ATGA TT A . . . C . T ACA AT T . A T G . . TT AAAAGTAACTTACCGCTG A
blockSeqs : A . . T . . G A . A . C . TGT CT T . . . T . A ACA AG T . A T G . . TT CAAAAGCTGATCTAACCG G
blockSeqs : . T . . T . . . . T . AT AA A . . . T . C AA A T . A G G . . TT A A
blockSeqs : . T . . . T . . . . C . . A . . . TT
blockSeqs : . . . . . . . . . . . . . TT
blockSeqs : .
blockSeqCons : AAA********* TT****** CAAACGTTTATCTTACCCG*****
originalCons : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAA----C-AA---CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT-----TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
finalCons : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAAAA---------CAATGACGTCAT-CAATTTGTGTGT-TGC-----TGCAAGATAAACCTT------CCCTGCCGATAAAGCAAACGTTTATCTTACCCG-----CTTTATTATGTNGAATAATACATAATGATATGACAAACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTTACCTGGGATAATTTGCCTAGATTAAGTAGTCGCGTTTCAAAGTGTCCTAGGATAGATTTTCTATGAATAGTAACAACTTTCAGACAATGAGAACGACTGTGAAACTCTACAACTGAAAAAAAGCCCAAAAGTGAAGTACCGAATCATCTTAACTCAGATAAATACTGACACAATCATTATTATGTTATTTCTACCTGACAATTGTTTGCTCATGTGTTAGTATTTTATGTACTTT
Unaligned ( gi|11 ): CATCGATATCTATCTGGGCAAGTTTGCCTAAGTTCAGTATAGATGATCTATAAAGAGTAAAAACTTTTAGGAACCGAAGGACGTTCTACCGCTCAAAATATAAAGAAATAGTTCTACCGTTGAATTCCCAACCACCGATTATCCTAATTCAGATAAATCCTTACACAAACTTTATTATGTCATTTCTACTTGAACATTGTTTGCCCAGGTTTCAGTACTTCAAGTACTTAGATT
Unaligned ( gi|16 ): GAATACCATATTAGTGCTTGATAAACTAAAATTTATCAGGTGATGAAGAGAAAAAAATAGTTCCGAGCCGAG
Alignments
lowQualScore : 111 1111 3333333333333333 555555555 111111 111111 1111111111 11111111 44444444444 11111 111111 222222222222222222222222
lowQualScore : 1 111 6 1 1 1111 6 1 1111111111111111 33 1 77 66 333333333 4 2 0 1 1 2 0 9999 444444 333333 5 4444444444 44 88 0 44444444 4 3 77 4 55555555555 33 0 3 4 44444 111111 777777777777777777777777 1 1
lowQualScore : . ... . . . .... . . ................ .. . .. .. ......... . . . . . . . .... ...... ...... . .......... .. .. . ........ . . .. . ........... .. . . . ..... ...... ........................ . .
lowQualScore : 0 777 7 0 0 2222 7 5 8888888888888888 55 4 99 99 444444444 5 2 4 0 4 5 2 2222 444444 666666 0 4444444444 88 99 7 55555555 0 6 99 4 00000000000 99 1 9 0 00000 555555 444444444444444444444444 0 4
consensus : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAAA---------CAATGACGTCATCAATTTGTGTGT-TGC-----TGCAAGATAAACCT------TCCCTGCCGATAAAGCAAANGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
Reference ( family-128 ) : TGTTTTATTTAT---TTT-ATTNANAAA--A-GCAA-CAAC-------T-GA-----TTTTAGTCCAGCAAACAAACGCGTG--TGTGT--ACATCTG---C-TGGGTAAANGCGCCTGAAAATANTTCCAAATTTGATTGATGAA---ATTAAAACAAAACA------AATGC-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATAATTATN-AGTTTATATTTAT--------T-GACATAATTAACAGTTTATCAACGGTCGAAAAA-GTGTTTAAACGC-GGGT-TTAACACAACGCAAAAAA--------CAATGACGTCATCAATTTGTGTGT-TGC-----TGCAAGATAAACCT------TCCCTGCCGATAAAGCAAACGTTTATCTTAC--C--C-GCTTTATTATGTNGAATAATACATAATGATATGACAAACA
gi|1 : AC---TTT-GCTAATAAA--A-GCAA-CAAC-------T-AA-----TTTAAGTCCATCCAACAAATGTGTG--TGTGC--ACAACCG------GGGTAAATGTGCC-GAGAATTATTCTAAATCTGATAAATGAA---ATTAAAACAAAACA------AATAT-----AGTT-TTT----ATG--GAAACTATTCAGCTTAGCCATGACATTT-AGTATAAAATTAT--------T-GACATAATAAACAGTTTAGCAACGATCGGAAAA-GTGTTCAAATGT-GG-----AACACAACGCAAAA-----------AATGACGTCATCAGTAT-TAAGT-TGT-----TGCAAGAT-AACCT------TCCGTGTCG----AG-------------------------TTTATTATGTTGAATAATACACAATGATATG
gi|12 : aaaggacatatgttctataaattgttacaattttcagaaacggaaggatgtccattaaattctaccgctgaaaaaataattcaaaagcttagttccaaattactgattatcttcattcagataaatattgacacacacgttatattgccatttcaatttaaccattacttcctcaggtttctgtactttaaggTTT-TCATCGGTCAAAAAG-ATCTTTAAACGT-TGAT-TTAACACAACACAAA--------------------------TTT-TGTGT-TGC-----TGCAAAACAAACGT------TCCTTACCGCTAAAGTAAACGTTTATGTTACCAC--C-TCTTTATTAAGTAGAATAATACATAATGATATGACAAAtataatatttttatatggtgtaaagattaattcatatcaagcgtgggaatgagtatgatagtcacgtggtcctttaaaggaagactgttattgatcaataaagcttttcaactgggaacaaaatatgacacaaatttggaattatattgtat
gi|13 : ATTATTGAATTTATATTTAT--------T-GACATAATTAACAGTTTACCAACGGTCGAAAAA-GTGTTAAAACGT-GTGTGGTAGCACAACACAAAACA--------TA--GACGTCACCAATTTGTGTGC-TGC-----TGCAAGATGAACAT------TTCCAGTCGATAAA------------------------ACTTTATTATGTTTAATAATACaaggaaacgcgttctatgcacttttttatcgtaatgcaccattctcaggaactaaatggcatctg
gi|14 : aagTGT-TGCC----TGCAAGAAAAACCT------TCCCTGCTGATAAAGCTTATGTTTATCTTAC--C--CAGCTTTATCAAGTAGAATATTCCAATATGATATGATAA
gi|15 : tttgaaataacaaaggttatacaCTTAGTTATAATAAGA-AGTTT-TAGTTAC--------T-GAAATAATTAATAGTTTATCAAGGGTCAAAAAA-GTATTCAAACG
gi|2 : TGTTTACTTTGT---TTT-ATTTACAAA--A-GCAA-CGAC-------T-GA-----TTCCGGTCCATCAGACCAACACGTG--GATAT--ACACCTGATCT-TGGGTAAACGCGCTTGAAAACTTGTCCAAATGTGATTGATGAT---ATTAAAACAAAACA------AATGA-----AGTT-TTT----ATG--GAAACTGTTCGACTCAGTTATGATAATC-AATTTATGTTTAT--------T-GACATATTTAAGAATGTATTAACGGCCGAAAAA-GTGTTAAAACGA-TGGT-TTAACACAACGCAAAAAAACCAAACCCAATGACATCAGAAGTTATTGTGC-TGC-----TGCAAGATAAGCATTCAAAGTCCCTGCAGATAAAGCAAATGTTTATCTAAC--CCAC-GCTTTATTATGTTGAATAATATATAGTGGTGTGATAAACAat
gi|3 : TGTTTTATTTAT---TTTCATTTAAAAC--A-TCAA-CAACAGTTTTCT-GA-----TTTTAGTTCAGAAAACAAACTCATG--TGTGT--TCATTGG---C---AGTAAAAGTGCCTTGAAATAGTTCCAAATTTGATGGATGAAGAAATTAAAACAAAACA------AATGC-----AGTTCTTT----ACA--TAAACTGTTTGACT--GTTATAACTATC-A-TTTATATCTAT--------T-GGCATAATTAACTGTTTATCAACAGT--AACAATGTGTTTAAACAC-AGGT-TTTATGCAAAGCAAAA-A--------CAATGATGTCATCAATTTGTGTGT-TGC-----TGTTTGATAAATCT------TCCCTACCAATAAAGCAAACATTTATTTTAC--C--CTACTTTATTATATAGAATAATcagaattatatgaataaatatcacgaagcgttaatgtatgctctgaatgtcatatgatcatataacatgtttttaacatgaaacatttcaataatgttaccatggaagtattcattgta
gi|4 : atttatcaggtgaagtagaggaaacaatgaagcacaggacttggtgagtgttaaattgttttcaagcagaattatgtcttgatttgtgTTTTTTTTAT---AAT-ATGCAAAAA--T-GCAA-------------------------AG----GCAAAGAAATGCATA--TGTGT--ACATCTG---CAT---TCAATGCCTTTGAAAATATTTCCAAATT-----------------AAAACAAAACA------ATTTT-----TTTT-TTTTTAAATG--GAAACTGTTCCTGTCAGTTACGATTATA-AGCTTATATTTAT--------TTGACA-------CAGTTCATCTACAGTCGATAAA-GTGTTTAAATGT-GGGT-TTAACACAATGCAAACA---------CATTGATGTCGTCAATT-GTGTGT-TGC-----TGCAAGATAAACCT------TCCCTGTCGAAAACGCTCAAGTTTATCTTAC--g
gi|5 : atgcctgatagtctaaaatttatcagatgaggtaaagaaaaaaatttgagccggacttgacatttgtcatgtcaattattataatatatgcacatt--ACATCTG---C-TG--TAAAAGTGCTTGAAAGTAGTTCCAAATTTGATTGATGAA---ATGAAAACAAAACA------TATGT-----AGTT-TGT----ATG--AAAACTGTTTGACTCGGTCATAATTACT-AGGTTATATTTTT--------T-GATATAATTAACAG--TATCAA----TGAAATA-ATATTTAAACTT-GGGT-TTAATACAACAT-AATAG--------CAAAGGTATCATT-ATTTGTGTGT-TAC-----TGCAAGATAAACCT------TCCATGCCAATAATG-AAAAG--TAACTTACCGC--T-GCTTTACTATGTGCAATAATACATAATGTTATGACAAAttta
gi|6 : catcataaaatattcatgactttgcacattgtatataaaaacaacaTGTTTTATTTGT---TT--ATTAAAAAA--AAGAAA-CCAC-------TTGAATGCGTTTT-GTCCCGCAAGCAAATGCATGACTGTGTTTACGTCTG---C---GGTAAATGCACCTGAAAATAATTC-AAAGCTCATTGATGAA---ATTAAAACAAAACA------CATGC-----AGTT-TTT----TTAACAAAACTGTTAGACTTTATTATAATTATA-AGCTTATATTTA----------------AA--AAAA--TTATCAGCAGTCGAAAAA-
gi|7 : gaaaatattttttccaaggtacgtgctaattattttcgagccaaacctgttcaatgttaggctatcaggcactgatatattttcgatttaaaatgtcattattagcgTATTCTATTTATCATTTT-ATTTAGAAATTA-ACAAACAAA-------T-GA-----TTTTAGTCCAGCAAACAAACTCATG--TGTGT--AAATCTG---T------------GCCTGGAAATAGTTCCAAATTTGATTGATGAT---AATAACACAAAACA------GATGCCCAACAAAT-CGT----AT-----AACAAATTGACTCTGTTATAACTAT--------TATTTAT--------T-GAGATAATTAAGAGATAATCAATAGTAAAACAA-GTGTATAAACACAGGGT-TTAACACATAGCAAA-----------TAATGATGTCATAAATGTGTGTGT-TAC-----TCCAAGACAAACCC------T
gi|8 : tttcgagtcaacatgataaatttggcactaacatcgCAGCAAACATCTGTATG--TATGT--TCATCTG---T------------GCCAAAAAATATTTCAAAGTTT-ATTGATGAA---ATTAAAACAAAACATTGTTAAATGT-----TGTT-TTT-----TG--TAAACTATTCAACTAATTTATAATTATT-AGTTTATATTCATAAATTTAAT-GACATAATTTACAGTTTAACAGCt
gi|9 : atttattaggtgaggtagagagaaaaaatgttttcaatgagaaccttatcaattttagactatcaggtactaatgtggtattatatttttcatgtcattatataattttgttgtatttttatttaaatgagaaGAAAAG-ATGTTTAG-TGT-GGAT-TTAACACAACTCACGAA---------CAAGGACGTCATCAATATGTGTGTGTGTCAATATATAGGATAAACAT------TCCCTGCAGATAAAACAAAAGCTGATC-TAA--C--C-GATTTATTCCGTAGACTATTACATAATGATATAAAAAACAtgacaacaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTTACCTGGGATAATTTGCCTAGATTAAGTAGTCGCGTTTCAAAGTGTCCTAGGATAGATTTTCTATGAATAGTAACAACTTTCAGACAATGAGAACGACTGTGAAACTCTACAACTGAAAAAAAGCCCAAAAGTGAAGTACCGAATCATCTTAACTCAGATAAATACTGACACAATCATTATTATGTTATTTCTACCTGACAATTGTTTGCTCATGTGTTAGTATTTTATGTACTTT
Unaligned ( gi|11 ): CATCGATATCTATCTGGGCAAGTTTGCCTAAGTTCAGTATAGATGATCTATAAAGAGTAAAAACTTTTAGGAACCGAAGGACGTTCTACCGCTCAAAATATAAAGAAATAGTTCTACCGTTGAATTCCCAACCACCGATTATCCTAATTCAGATAAATCCTTACACAAACTTTATTATGTCATTTCTACTTGAACATTGTTTGCCCAGGTTTCAGTACTTCAAGTACTTAGATT
Unaligned ( gi|16 ): GAATACCATATTAGTGCTTGATAAACTAAAATTTATCAGGTGATGAAGAGAAAAAAATAGTTCCGAGCCGAG