lowQualScore : 1 22 11 111 1 1 55555 22 111 1 1 1 11 11 22 333333 11 555555 77777777777777777777 222222222 1 44444444444444444 22 55555555 1 33333333333 3333 1 1 111 2222 1 555555 22 22
lowQualScore : 7 8 99 8 8 11 7 6 0 8 0 444 2 7 7 2 77777 11 99 4 0 333 6 5 6 0 7 77 88 55 666666 00 2 4 4 777777 3 555 4 3 99999999999999999999 555555555 6 99 0 3 66666666666666666 7 7 11 4 33333333 0 3 11 7 77777777777 6666 6 2 5 6 666 2222 0 777777 6 11 6 6 33 6
lowQualScore : . . .. . . .. . . . . . ... . . . . ..... .. .. . . ... . . . . . .. .. .. ...... .. . . . ...... . ... . . .................... ......... . .. . . ................. . . .. . ........ . . .. . ........... .... . . . . ... .... . ...... . .. . . .. .
lowQualScore : 0 0 22 4 0 00 8 0 8 2 2 888 5 0 0 2 55555 66 44 3 7 333 0 0 0 5 0 00 33 55 000000 00 5 0 0 555555 2 222 5 5 55555555555555555555 222222222 0 00 5 0 44444444444444444 3 3 77 0 77777777 7 3 33 3 33333333333 3333 7 3 0 0 000 5555 5 555555 0 00 0 0 00 0
consensus : AACAAGAAAATATCGGT-GGAACCGA-TGGATGCTCCCC-AAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTGACACAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCT-GTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAAT-CGTGCAT--CCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCNGAGAAGAGTTTGGTCACACAGATNGAGTNANAGGGCCNCAAAAAGGCCTCCGTGAAAAATCATCGAACCGGAACA------CAATGC--------ACATA-----GCN-AGTTTCACAAAATTNNAACCAGAGGTTGTAGNGAAATAGNGTCGCGAGGACAAT-ATTTGGTCACAGACTCAATGAAAGGGCCANAACTC---CATGAAAAATCATCGAACCGGAACACAAGAC-AATATGTACATCTCCACTTGGTAAT-ATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCCGAGAAGAGTTTGGTCACAGATNGAGTNANAGGGCCNCAAAAAGGCCTCCGTGAAAAATCACCAAACTGGTACACAAA
Reference ( gi|1 ) : AACAAGATAATATCGAT-GGA-TCTA-TGGATGCTCCCT-AAGTGAGCGTTTGACTCTGTACTATATTTCCTTAGTGCTGATGGCTACTAGGTTGAAAAAAACCAAACTGCATAGCA-GGAACAAT-TAAAGCTCTGCACTTGACAGAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAACTAAAACCAGAGGTTGTAGCGAAATAGCGTAATAAGGACAATATGCACATCACCACTTGGTAAT-CATGCAT--CCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGT--CA--GACAGAATGAAAGGGCCACAA------CTCCGTGAAAAATCATCGAACTGGAACA------CAA-----------ACATA-----GCA-AATTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATATTATTGCAAGGACAATCATTTGGTCACAGACTCAATGTTAGGGCCATAACTC---CAAG-AAAATCATCGAACCGGAACACAAGGC-AATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAA------CTCCGTAAAAAATCGACGAACCGAAACATAAAGACAATATTATTATTTTCCAAACTTCTGGTAAGATTGCAAACAGCTGCTAAATTTTAGTTCCGATA
gi|2 : AACAAGAAAATATCGGT-GGAATCGA-TGGATGCTCCCC-AAGTGAGAGTTTGACTCTGTACCA---------------GAT----ACTTGGTTGAATAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTTGCAAATCATTGAACCGGAACAAAATGACAATATGTGCAGATCCTAGCTTGTTTTACAGAATTAAAACCAGAGGTTGTAGCGAAATAGCACCATGACGACAATATGCACATCTCCACTTGGTAAT-GATGCAT--CCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAGCA-AGAAGAATTTGGT--CACAGATTGAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAAA---------------CA------CAA-----------ACATA-----GCA-AGTTTCATAAAATTCTAACCTGAGGTTGTAGAGAACTA-----GCGCGTACAATAATTTGGTCACAGACTCAATGAAAGGACCATAATTC---CATGAAAAATCATCGAACCAGAACAC
gi|3 : caacAACAAGAAAATATAGGT-GGA-ACCAATGGATGCTCCCC-ATGTGAGTGTTTGACTCTGTACCATATTCCTTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCA-GTAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATATACATATCTTAG----TTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATATGTACATCTTCACTTGGTAAT-CATGCAT--CCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGTCACA--GATAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACA------CAA-----------A
gi|4 : caAACAAGAAAATATCGAT-GGAACCGA-TGGATGCTCCCT-AAGCGAGTGTTTGACTCTGTACCATATTCCCTTAGT--TGATGGCTACTTGGTTGAAAAATACCAAACTATATAGCA-GGAACAATATGTGGCTCTGCAATAGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGT
gi|6 : aagAACAAGAAAATATCGAT-GGAACCTA-TGGACGCTCTTC-AAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGAGCTGATGGCTACTTGGTT
gi|5 : aACAAGAAAATATCGGTTGAA-CCGA-TGGATGCTCCCCCAGGTGAGTGTTTTACTCTGTATCATAT
gi|18 : aacagactcattCTGCATAACA-AGAACAATATGTAGCTCTGCACTTggtaatgatattgaac
gi|19 : CATAACA-GGAACAATATGAGGCTCTGCACTT
gi|20 : CATAGCA-GGAACAATATGTTGCTCTGCACTT
gi|7 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCACAAATTATTTAACCTGAACAAAATG
gi|16 : ATAGCA-GGAACAATATGTGGCTCTGCACCTGAC--AGAACTCATTC
gi|17 : ATAGCA-GGAACAATATGTGGCTCTGCACTTGAC--AGAACTCA
gi|15 : ATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTCATT
gi|12 : ATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTAATTCGt
gi|14 : ATAGCA-GGAACAATATGTGACTCTGCACTT--CACAGAACTCATTC
gi|9 : ATAGTATGGAACAATATGTGGCTCTGCACTTGAC--AGAACTCATTTG
gi|13 : ATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTAATTC
gi|8 : ATAGCA-GGAACAACATGTGGCTCTGCACTT--CACAGAACTAATTCGa
gi|11 : tATAGCA-GGAACAATATGTGGCTCTGTACTT--CACAGAACTAATTCG
gi|10 : ATAGCA-GGAACAATATGTAGCGTTGCACTT--CACAGAACTAATTCG
gi|21 : ATAGCA-GGAACAATATGTGGCTTTGCACTT
gi|4 : TGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAG
gi|3 : aagaacaagaaaatatcgatggaaccgatggatgctccctaagcgagtgtttgactctgtaccatattcccttagttgatggctacttggttgaaaaataccaaactatatagcaggaacaatatgtggctctgcaatagacagaactcattcgcaaatcattgaaccggaacaaaaAAATCATTGAACCGGAACAAAATGACAATATAT------ACATA-----TCTTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATcgt
gi|4 : caaacaagaaaatataggtggaaccaatggatgctccccatgtgagtgtttgactctgtaccatattcctttagtgctgatggctacttggttgaaaaataccaaactacatagcagtaacaatatgtggctctgcacttgacagaactcattcgcAAATCATTGAACCGGAACA------AAATGCTAATATGTGCATATCCTAGCT-AGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAatgtacatcttcacttggtaatcatgcatcctagcaagtttcataaaattccaaccagagtttgtagagaaacagagctgagaagagtttggtcacagatagaatgatagggccacaactccatgaaaaatcaccaaactggtacacaaa
gi|3 : aagaacaagaaaatatcgatggaaccgatggatgctccctaagcgagtgtttgactctgtaccatattcccttagttgatggctacttggttgaaaaataccaaactatatagcaggaacaatatgtggctctgcaatagacagaactcattcgcTA-----GCA-AGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGA-----GTTTGGTCACAGATAGAATGATAGGGCCACAACTC---CATGAAAAATCACCAAACTGGTACACAAgcgt
gi|4 : caaacaagaaaatataggtggaaccaatggatgctccccatgtgagtgtttgactctgtaccatattcctttagtgctgatggctacttggttgaaaaataccaaactacatagcagtaacaatatgtggctctgcacttgacagaactcattcgcaaatcattgaaccggaacaaaatgacaatatatacatatcttagttttacaaaattaaaaccagaggttgtagcgaaatagcgtcatgaagacaatatgtacatcttcacttggtaatcatgcatccTATAGCAGGAACAAT-ATGTGG-------CTC--TGCAATAGACAGAACTCATTC--G-CAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCC-------------------TAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTa
gi|3 : aagaacaagaaaatatcgatggaaccgatggatgctccctaagcgagtgtttgactctgtaccatattcccttagttgatggctacttggttgaaaaataccaaactaAAGAC-AATATGTACATCTTCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGTCACAGATAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACACAAA
gi|2 : caaacaagaaaatataggtggaaccaatggatgctccccatgtgagtgtttgactctgtaccatattcctttagtgctgatggctacttggttgaaaaataccaaactacatagcagtaacaatatgtggctctgcacttgacagaactcattcgcaaatcattgaaccggaacaaaatgacaatatatacatatcttagttttacaaaattaaaaccagaggttgtagcgaaatagcgtcatgGAC-AATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAG-CAAGAAGAATTTGGTCACAGATTGAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAAA
Alignments
lowQualScore : 111111
lowQualScore : 33 3 111111 555555 11111111111111 777 1 3333 222 333 1 11 4 1 1 33 1111 1 111 11 111111 22 22
lowQualScore : 1 6 66 2 66 2 0 1 6 77 6 666666 0 1 1 1 777777 99999999999999 000 1 6 22 7 1 3 6666 000 111 88 1 4 5 6 22 6 0 5 5 22 6 7777 5 6 6 333 6 1 88 77 555555 6 11 6 6 33 6
lowQualScore : . . .. . .. . . . . .. . ...... . . . . ...... .............. ... . . .. . . . .... ... ... .. . . . . .. . . . . .. . .... . . . ... . . .. .. ...... . .. . . .. .
lowQualScore : 0 7 00 1 99 5 0 0 0 77 7 000000 7 0 0 0 777777 33333333333333 000 0 0 00 0 0 0 5555 555 000 00 0 0 5 0 00 0 0 0 0 00 0 0000 0 0 0 000 0 0 00 00 000000 0 00 0 0 00 0
consensus : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCACACAGAT-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAA---ACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTANTATCGCGAGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAA------CTCCGTAAAAAATCGACGAACCGAAACATAAA
Reference ( family-1190 ) : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTGACACAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCT-GTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCGTGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCNGAGAAGAGTTTGGTCACACAGATNGAGTNANAGGGCCNCAAAAAGGCCTCCGTGAAAAATCATCGAACCGGAACACAATGCACATAGCNAGTTTCACAAAATTNNAACCAGAGGTTGTAGNGAAATAGNGTCGCGAGGACAAT-A-TTTGGTCACAGACTCAATGAAAGGGCCANAACTCCATGAAAAATCATCGAACCGGAACACAAGACAATATGTACATCTCCACTTGGTAAT-ATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCCGAGAAGAGTTTGGTCACAGATNGAGTNANAGGGCCNCAAAAAGGCCTCCGTGAAAAATCACCAAACTGGTACACAAA
gi|1 : AACAAGATAATATCGATGGA-TCTATGGATGCT-CCCTAAGTGAGCGTTTGACTCTGTACTATATTTCCTTAGTGCTGATGGCTACTAGGTTGAAAAAAACCAAACTGCATAGCA-GGAACAAT-TAAAGCTCTGCACTTGACAGAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAACTAAAACCAGAGGTTGTAGCGAAATAGCGTAATAAGGACAATATGCACATCACCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCAGACA----GAATGAAAGGGCCACAA------CTCCGTGAAAAATCATCGAACTGGAACACAA---ACATAGCAAATTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATATTATTGCAAGGACAATCA-TTTGGTCACAGACTCAATGTTAGGGCCATAACTCCAAG-AAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAA------CTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|10 : ATAGCA-GGAACAATATGTAGCGTTGCACTT--CACAGAACTAATTCGgacaatattattattttccaaacttctggtaagattgcaaacagctgctaaattttagttccgata
gi|11 : ATAGCA-GGAACAATATGTGGCTCTGTACTT--CACAGAACTAATTCG
gi|12 : ATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTAATTCG
gi|13 : ATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTAATTC
gi|14 : ATAGCA-GGAACAATATGTGACTCTGCACTT--CACAGAACTCATTCa
gi|15 : ATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTCATT
gi|16 : ATAGCA-GGAACAATATGTGGCTCTGCACCTG--ACAGAACTCATTCt
gi|17 : ATAGCA-GGAACAATATGTGGCTCTGCACTTG--ACAGAACTCA
gi|18 : CTGCATAACA-AGAACAATATGTAGCTCTGCACTT
gi|19 : CATAACA-GGAACAATATGAGGCTCTGCACTT
gi|2 : AACAAGAAAATATCGGTGGAATCGATGGATGCT-CCCCAAGTGAGAGTTTGACTCTGTACCA---------------GAT----ACTTGGTTGAATAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTCATTTGCAAATCATTGAACCGGAACAAAATGACAATATGTGCAGATCCTAGCTTGTTTTACAGAATTAAAACCAGAGGTTGTAGCGAAATAGCACCATGACGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAGCA-AGAAGAATTTGGTCACA--GATTGAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAAA---------------CACAA---ACATAGCAAGTTTCATAAAATTCTAACCTGAGGTTGTAGAGAACTAG---CGCG--TACAAT-AATTTGGTCACAGACTCAATGAAAGGACCATAATTCCATGAAAAATCATCGAACCAGAACAC
gi|20 : caacCATAGCA-GGAACAATATGTTGCTCTGCACTT
gi|21 : ATAGCA-GGAACAATATGTGGCTTTGCACTT
gi|3 : AACAAGAAAATATAGGTGGAACCAATGGATGCT-CCCCATGTGAGTGTTTGACTCTGTACCATATTCCTTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCA-GTAACAATATGTGGCTCTGCACTTGACA--GAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATATACATATCTTAG----TTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATATGTACATCTTCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGT--CACAGATAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACACAA
gi|4 : caAACAAGAAAATATCGATGGAACCGATGGATGCT-CCCTAAGCGAGTGTTTGACTCTGTACCATATTCCCTTAGT--TGATGGCTACTTGGTTGAAAAATACCAAACTATATAGCA-GGAACAATATGTGGCTCTGCAAT--AGACAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTa
gi|5 : aagACAAGAAAATATCGGTTGAACCGATGGATGCTCCCCCAGGTGAGTGTTTTACTCTGTATCATAT
gi|6 : aacagactcattAACAAGAAAATATCGATGGAACCTATGGACGCT-CTTCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGAGCTGATGGCTACTTGGTTggtaatgatattgaac
gi|7 : aATAGCA-GGAACAATATGTGGCTCTGCACTT--CACAGAACTAATTCACAAATTATTTAACCTGAACAAAATG
gi|8 : ATAGCA-GGAACAACATGTGGCTCTGCACTT--CACAGAACTAATTCG
gi|9 : tATAGTATGGAACAATATGTGGCTCTGCACTTG--ACAGAACTCATTTG
Alignments
lowQualScore : 1 33333333333 333333 222222222222222 44444 33 1
lowQualScore : 1 6 66 2 33 2 1 5 22222222222 888888 777777777777777 1 00000 3 1 00 22 1 5
lowQualScore : . . .. . .. . . . ........... ...... ............... . ..... . . .. .. . .
lowQualScore : 0 7 00 1 77 5 0 0 00000000000 333333 000000000000000 0 00000 0 0 55 00 0 5
consensus : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGT--CACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
Reference ( family-1190 ) : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCACACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTANTATCGCGAGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|1 : AACAAGATAATATCGATGGA-TCTATGGATGCT-CCCTAAGTGAGCGTTTGACTCTGTACTATATTTCCTTAGTGCTGATGGCTACTAGGTTGAAAAAAACCAAACTGCATAGCA-GGAACAAT-TAAAGCTCTGCACTTGACAGAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAACTAAAACCAGAGGTTGTAGCGAAATAGCGTAATAAGGACAATATGCACATCACCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCAGACA-----GAATGAAAGGGCCACAA------CTCCGTGAAAAATCATCGAACTGGAACACAAACATAGCAAATTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATATTATTGCAAGGACAATC-ATTTGGTCACAGACTCAATGTTAGGGCCATAACTCCAAG-AAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|10 : ATAGCA-GGAACAATATGTAGCGTTGCACTTCACAGA--ACTAATTCGgacaatattattattttccaaacttctggtaagattgcaaacagctgctaaattttagttccgata
gi|11 : ATAGCA-GGAACAATATGTGGCTCTGTACTTCACAGA--ACTAATTCG
gi|12 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|13 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTC
gi|14 : ATAGCA-GGAACAATATGTGACTCTGCACTTCACAGA--ACTCATTCa
gi|15 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATT
gi|16 : ATAGCA-GGAACAATATGTGGCTCTGCACCTGACAGA--ACTCATTCt
gi|17 : ATAGCA-GGAACAATATGTGGCTCTGCACTTGACAGA--ACTCA
gi|18 : CTGCATAACA-AGAACAATATGTAGCTCTGCACTT
gi|19 : CATAACA-GGAACAATATGAGGCTCTGCACTT
gi|2 : AACAAGAAAATATCGGTGGAATCGATGGATGCT-CCCCAAGTGAGAGTTTGACTCTGTACCA---------------GAT----ACTTGGTTGAATAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTTGCAAATCATTGAACCGGAACAAAATGACAATATGTGCAGATCCTAGCTTGTTTTACAGAATTAAAACCAGAGGTTGTAGCGAAATAGCACCATGACGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAGC-AAGAAGAATTTGGT--CACAGATT-GAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAA---------------ACACAAACATAGCAAGTTTCATAAAATTCTAACCTGAGGTTGTAGAGAACTA-----GCGCGTACAAT-AATTTGGTCACAGACTCAATGAAAGGACCATAATTCCATGAAAAATCATCGAACCAGAACAC
gi|20 : caacCATAGCA-GGAACAATATGTTGCTCTGCACTT
gi|21 : ATAGCA-GGAACAATATGTGGCTTTGCACTT
gi|3 : AACAAGAAAATATAGGTGGAACCAATGGATGCT-CCCCATGTGAGTGTTTGACTCTGTACCATATTCCTTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCA-GTAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATATACATATC----TTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATATGTACATCTTCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGT--CACAGA-TAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACACAAA
gi|4 : caAACAAGAAAATATCGATGGAACCGATGGATGCT-CCCTAAGCGAGTGTTTGACTCTGTACCATATTCCCTTAGT--TGATGGCTACTTGGTTGAAAAATACCAAACTATATAGCA-GGAACAATATGTGGCTCTGCAATAGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGT
gi|5 : aagACAAGAAAATATCGGTTGAACCGATGGATGCTCCCCCAGGTGAGTGTTTTACTCTGTATCATAT
gi|6 : aacagactcattAACAAGAAAATATCGATGGAACCTATGGACGCT-CTTCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGAGCTGATGGCTACTTGGTTggtaatgatattgaac
gi|7 : aATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCACAAATTATTTAACCTGAACAAAATG
gi|8 : ATAGCA-GGAACAACATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|9 : tATAGTATGGAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTTG
Alignments
lowQualScore : 2 333 333333 222222222222222 22222 33 1
lowQualScore : 1 6 66 2 33 2 1 6 444 888888 777777777777777 1 77777 1 1 00 22 1 5
lowQualScore : . . .. . .. . . . ... ...... ............... . ..... . . .. .. . .
lowQualScore : 0 7 00 1 77 5 0 7 000 333333 000000000000000 0 55555 0 0 55 00 0 5
consensus : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
Reference ( family-1190 ) : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|1 : AACAAGATAATATCGATGGA-TCTATGGATGCT-CCCTAAGTGAGCGTTTGACTCTGTACTATATTTCCTTAGTGCTGATGGCTACTAGGTTGAAAAAAACCAAACTGCATAGCA-GGAACAAT-TAAAGCTCTGCACTTGACAGAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAACTAAAACCAGAGGTTGTAGCGAAATAGCGTAATAAGGACAATATGCACATCACCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCAGACA---GAATGAAAGGGCCACAA------CTCCGTGAAAAATCATCGAACTGGAACACAAACATAGCAAATTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATATTATTGCAAGGACAATC-ATTTGGTCACAGACTCAATGTTAGGGCCATAACTCCAAG-AAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|10 : ATAGCA-GGAACAATATGTAGCGTTGCACTTCACAGA--ACTAATTCGgacaatattattattttccaaacttctggtaagattgcaaacagctgctaaattttagttccgata
gi|11 : ATAGCA-GGAACAATATGTGGCTCTGTACTTCACAGA--ACTAATTCG
gi|12 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|13 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTC
gi|14 : ATAGCA-GGAACAATATGTGACTCTGCACTTCACAGA--ACTCATTCa
gi|15 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATT
gi|16 : ATAGCA-GGAACAATATGTGGCTCTGCACCTGACAGA--ACTCATTCt
gi|17 : ATAGCA-GGAACAATATGTGGCTCTGCACTTGACAGA--ACTCA
gi|18 : CTGCATAACA-AGAACAATATGTAGCTCTGCACTT
gi|19 : CATAACA-GGAACAATATGAGGCTCTGCACTT
gi|2 : AACAAGAAAATATCGGTGGAATCGATGGATGCT-CCCCAAGTGAGAGTTTGACTCTGTACCA---------------GAT----ACTTGGTTGAATAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTTGCAAATCATTGAACCGGAACAAAATGACAATATGTGCAGATCCTAGCTTGTTTTACAGAATTAAAACCAGAGGTTGTAGCGAAATAGCACCATGACGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAGC-AAGAAGAATTTGGTCACAGATT-GAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAA---------------ACACAAACATAGCAAGTTTCATAAAATTCTAACCTGAGGTTGTAGAGAACTA-----GCGCGTACAAT-AATTTGGTCACAGACTCAATGAAAGGACCATAATTCCATGAAAAATCATCGAACCAGAACAC
gi|20 : caacCATAGCA-GGAACAATATGTTGCTCTGCACTT
gi|21 : ATAGCA-GGAACAATATGTGGCTTTGCACTT
gi|3 : AACAAGAAAATATAGGTGGAACCAATGGATGCT-CCCCATGTGAGTGTTTGACTCTGTACCATATTCCTTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCA-GTAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATATACATATC----TTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATATGTACATCTTCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGTCACAGA-TAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACACAAA
gi|4 : caAACAAGAAAATATCGATGGAACCGATGGATGCT-CCCTAAGCGAGTGTTTGACTCTGTACCATATTCCCTTAGT--TGATGGCTACTTGGTTGAAAAATACCAAACTATATAGCA-GGAACAATATGTGGCTCTGCAATAGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGT
gi|5 : aagACAAGAAAATATCGGTTGAACCGATGGATGCTCCCCCAGGTGAGTGTTTTACTCTGTATCATAT
gi|6 : aacagactcattAACAAGAAAATATCGATGGAACCTATGGACGCT-CTTCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGAGCTGATGGCTACTTGGTTggtaatgatattgaac
gi|7 : aATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCACAAATTATTTAACCTGAACAAAATG
gi|8 : ATAGCA-GGAACAACATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|9 : tATAGTATGGAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTTG
Alignments
lowQualScore : 2 333 333333 222222222222222 22222 33 1
lowQualScore : 1 6 66 2 33 2 1 6 444 888888 777777777777777 1 77777 1 1 00 22 1 5
lowQualScore : . . .. . .. . . . ... ...... ............... . ..... . . .. .. . .
lowQualScore : 0 7 00 1 77 5 0 7 000 333333 000000000000000 0 55555 0 0 55 00 0 5
consensus : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
Reference ( family-1190 ) : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|1 : AACAAGATAATATCGATGGA-TCTATGGATGCT-CCCTAAGTGAGCGTTTGACTCTGTACTATATTTCCTTAGTGCTGATGGCTACTAGGTTGAAAAAAACCAAACTGCATAGCA-GGAACAAT-TAAAGCTCTGCACTTGACAGAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAACTAAAACCAGAGGTTGTAGCGAAATAGCGTAATAAGGACAATATGCACATCACCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCAGACA---GAATGAAAGGGCCACAA------CTCCGTGAAAAATCATCGAACTGGAACACAAACATAGCAAATTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATATTATTGCAAGGACAATC-ATTTGGTCACAGACTCAATGTTAGGGCCATAACTCCAAG-AAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|10 : ATAGCA-GGAACAATATGTAGCGTTGCACTTCACAGA--ACTAATTCGgacaatattattattttccaaacttctggtaagattgcaaacagctgctaaattttagttccgata
gi|11 : ATAGCA-GGAACAATATGTGGCTCTGTACTTCACAGA--ACTAATTCG
gi|12 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|13 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTC
gi|14 : ATAGCA-GGAACAATATGTGACTCTGCACTTCACAGA--ACTCATTCa
gi|15 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATT
gi|16 : ATAGCA-GGAACAATATGTGGCTCTGCACCTGACAGA--ACTCATTCt
gi|17 : ATAGCA-GGAACAATATGTGGCTCTGCACTTGACAGA--ACTCA
gi|18 : CTGCATAACA-AGAACAATATGTAGCTCTGCACTT
gi|19 : CATAACA-GGAACAATATGAGGCTCTGCACTT
gi|2 : AACAAGAAAATATCGGTGGAATCGATGGATGCT-CCCCAAGTGAGAGTTTGACTCTGTACCA---------------GAT----ACTTGGTTGAATAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTTGCAAATCATTGAACCGGAACAAAATGACAATATGTGCAGATCCTAGCTTGTTTTACAGAATTAAAACCAGAGGTTGTAGCGAAATAGCACCATGACGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAGC-AAGAAGAATTTGGTCACAGATT-GAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAA---------------ACACAAACATAGCAAGTTTCATAAAATTCTAACCTGAGGTTGTAGAGAACTA-----GCGCGTACAAT-AATTTGGTCACAGACTCAATGAAAGGACCATAATTCCATGAAAAATCATCGAACCAGAACAC
gi|20 : caacCATAGCA-GGAACAATATGTTGCTCTGCACTT
gi|21 : ATAGCA-GGAACAATATGTGGCTTTGCACTT
gi|3 : AACAAGAAAATATAGGTGGAACCAATGGATGCT-CCCCATGTGAGTGTTTGACTCTGTACCATATTCCTTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCA-GTAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATATACATATC----TTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATATGTACATCTTCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGTCACAGA-TAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACACAAA
gi|4 : caAACAAGAAAATATCGATGGAACCGATGGATGCT-CCCTAAGCGAGTGTTTGACTCTGTACCATATTCCCTTAGT--TGATGGCTACTTGGTTGAAAAATACCAAACTATATAGCA-GGAACAATATGTGGCTCTGCAATAGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGT
gi|5 : aagACAAGAAAATATCGGTTGAACCGATGGATGCTCCCCCAGGTGAGTGTTTTACTCTGTATCATAT
gi|6 : aacagactcattAACAAGAAAATATCGATGGAACCTATGGACGCT-CTTCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGAGCTGATGGCTACTTGGTTggtaatgatattgaac
gi|7 : aATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCACAAATTATTTAACCTGAACAAAATG
gi|8 : ATAGCA-GGAACAACATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|9 : tATAGTATGGAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTTG
blockSeqs : G C TG T . C C T TT AAAGGC AATCACCAAACTGGT C . C T A AA T A
blockSeqs : A . AG . . C A . TA . .
blockSeqs : G . T . . .
blockSeqs : G . . . .
blockSeqs : T . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : **
originalCons : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
finalCons : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
Alignments
lowQualScore : 2 333 333333 222222222222222 22222 33 1
lowQualScore : 1 6 66 2 33 2 1 6 444 888888 777777777777777 1 77777 1 1 00 22 1 5
lowQualScore : . . .. . .. . . . ... ...... ............... . ..... . . .. .. . .
lowQualScore : 0 7 00 1 77 5 0 7 000 333333 000000000000000 0 55555 0 0 55 00 0 5
consensus : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
Reference ( family-1190 ) : AACAAGAAAATATCGGTGGAACCGATGGATGCT-CCCCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGANGACAATATGCACATCTCCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGC-GAGAAGAGTTTGGTCACAGA-T-GAATGAAAGGGCCACAA------CTCCGTGAAAAATCACCGAACTGG-ACACAAACATAGCAAGTTTCATAAAATTCCAACCTGAGGTTGTAGAGAANTATTATTGCGNGNACAATCAATTTGGTCACAGACTCAATGNNAGGGCCATAACTCCANGAAAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|1 : AACAAGATAATATCGATGGA-TCTATGGATGCT-CCCTAAGTGAGCGTTTGACTCTGTACTATATTTCCTTAGTGCTGATGGCTACTAGGTTGAAAAAAACCAAACTGCATAGCA-GGAACAAT-TAAAGCTCTGCACTTGACAGAGAACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATGTGCATATCCTAGCTAGTTTTACAAAACTAAAACCAGAGGTTGTAGCGAAATAGCGTAATAAGGACAATATGCACATCACCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGGTTGTAGAGAAATAGAGCGGAGAAGAGTTTGGTCAGACA---GAATGAAAGGGCCACAA------CTCCGTGAAAAATCATCGAACTGGAACACAAACATAGCAAATTTCATAAAATTCCAACCTGAGGTTGTAGAGAAATATTATTGCAAGGACAATC-ATTTGGTCACAGACTCAATGTTAGGGCCATAACTCCAAG-AAAATCATCGAACCGGAACACAAGGCAATATGCGCATCTCCACTTGGTAGTGATGGATCATAGCAAGTTTCATAAAATTCCAACATGGGGTTGTAGAGAAATAGCGTTGACAAGAATTTAGTCACAGACAAAATAAATGGGCCGTAACTCCGTAAAAAATCGACGAACCGAAACATAAA
gi|10 : ATAGCA-GGAACAATATGTAGCGTTGCACTTCACAGA--ACTAATTCGgacaatattattattttccaaacttctggtaagattgcaaacagctgctaaattttagttccgata
gi|11 : ATAGCA-GGAACAATATGTGGCTCTGTACTTCACAGA--ACTAATTCG
gi|12 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|13 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTC
gi|14 : ATAGCA-GGAACAATATGTGACTCTGCACTTCACAGA--ACTCATTCa
gi|15 : ATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATT
gi|16 : ATAGCA-GGAACAATATGTGGCTCTGCACCTGACAGA--ACTCATTCt
gi|17 : ATAGCA-GGAACAATATGTGGCTCTGCACTTGACAGA--ACTCA
gi|18 : CTGCATAACA-AGAACAATATGTAGCTCTGCACTT
gi|19 : CATAACA-GGAACAATATGAGGCTCTGCACTT
gi|2 : AACAAGAAAATATCGGTGGAATCGATGGATGCT-CCCCAAGTGAGAGTTTGACTCTGTACCA---------------GAT----ACTTGGTTGAATAATACCAAACTGCATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTCATTTGCAAATCATTGAACCGGAACAAAATGACAATATGTGCAGATCCTAGCTTGTTTTACAGAATTAAAACCAGAGGTTGTAGCGAAATAGCACCATGACGACAATATGCACATCTCCACTTGGTAATGATGCATCCTAGCAAGTTTCATAAAATTCCAACCACAGGTTGTAGAGAAATAGAGC-AAGAAGAATTTGGTCACAGATT-GAGTCAAAGGGCCTTAAAAAGGCCTCCGTGAAA---------------ACACAAACATAGCAAGTTTCATAAAATTCTAACCTGAGGTTGTAGAGAACTA-----GCGCGTACAAT-AATTTGGTCACAGACTCAATGAAAGGACCATAATTCCATGAAAAATCATCGAACCAGAACAC
gi|20 : caacCATAGCA-GGAACAATATGTTGCTCTGCACTT
gi|21 : ATAGCA-GGAACAATATGTGGCTTTGCACTT
gi|3 : AACAAGAAAATATAGGTGGAACCAATGGATGCT-CCCCATGTGAGTGTTTGACTCTGTACCATATTCCTTTAGTGCTGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCA-GTAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGACAATATATACATATC----TTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGTCATGAAGACAATATGTACATCTTCACTTGGTAATCATGCATCCTAGCAAGTTTCATAAAATTCCAACCAGAGTTTGTAGAGAAACAGAGCTGAGAAGAGTTTGGTCACAGA-TAGAATGATAGGGCCACAA------CTCCATGAAAAATCACCAAACTGGTACACAAA
gi|4 : caAACAAGAAAATATCGATGGAACCGATGGATGCT-CCCTAAGCGAGTGTTTGACTCTGTACCATATTCCCTTAGT--TGATGGCTACTTGGTTGAAAAATACCAAACTATATAGCA-GGAACAATATGTGGCTCTGCAATAGACAGA--ACTCATTCGCAAATCATTGAACCGGAACAAAATGCTAATATGTGCATATCCTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAATAGCGT
gi|5 : aagACAAGAAAATATCGGTTGAACCGATGGATGCTCCCCCAGGTGAGTGTTTTACTCTGTATCATAT
gi|6 : aacagactcattAACAAGAAAATATCGATGGAACCTATGGACGCT-CTTCAAGTGAGTGTTTGACTCTGTACCATATTCCCTTAGAGCTGATGGCTACTTGGTTggtaatgatattgaac
gi|7 : aATAGCA-GGAACAATATGTGGCTCTGCACTTCACAGA--ACTAATTCACAAATTATTTAACCTGAACAAAATG
gi|8 : ATAGCA-GGAACAACATGTGGCTCTGCACTTCACAGA--ACTAATTCG
gi|9 : tATAGTATGGAACAATATGTGGCTCTGCACTTGACAGA--ACTCATTTG