lowQualScore : 11 777777777777777777777777777777777777777777777777777 111 333333333333333 2222222 222 1 77777777777777777777777777777777777777777777777777777777777777777777777 1 2 44444444444444 11 2222 555555555555555555 11111 1 2 11 66666666666666666666666666 22222222222 11 1111111 1111 444444444444444 333333333333
lowQualScore : 0 5 00 5 6 5 222222222222222222222222222222222222222222222222222 111 66 88 888888888888888 0 6 5555555 2 666 7 11111111111111111111111111111111111111111111111111111111111111111111111 6 5 0 1 0 00000000000000 11 6666 2 888888888888888888 44444 1 3 4 0 0 0 2 6 33 5 44444444444444444444444444 5 00000000000 55 55 55 2222222 7777 444 222222222222222 555 0 222222222222 8 2 6 2 3
lowQualScore : . . .. . . . ................................................... ... .. .. ............... . . ....... . ... . ....................................................................... . . . . . .............. .. .... . .................. ..... . . . . . . . . .. . .......................... . ........... .. .. .. ....... .... ... ............... ... . ............ . . . . .
lowQualScore : 8 5 44 3 4 3 777777777777777777777777777777777777777777777777777 777 88 55 888888888888888 8 2 6666666 2 888 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 4 8 00000000000000 00 8888 5 888888888888888888 33333 4 9 3 1 0 2 2 0 11 0 44444444444444444444444444 0 44444444444 55 55 66 1111111 5555 666 777777777777777 444 2 444444444444 6 9 6 9 2
consensus : GCCTAAATTAAAATATTGTTTGTTTGTCCTTTACCTA-CCATTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT--T-TA---TATTTTACATTTTGTGTTTCGTCGGACATAACGT---CTTATNATTA-CA----TTTCCCTA--GCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTNNGATCGCCCA----AGCGACA---ATCCGCAG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAACGACAAA-CAATAAAAATAAATATTT---G------------TTTG-G-G-A-------A--TGCAA--T-AAAATTATTA---G---AGT-NG-G-G-CAATATT---AT----CGGGTAG---GTAGGT-A-----A-G--G-A-CAAACAAACAATA-TTTTANTTTAGGCC
Reference ( gi|2 ) : GCCTAAATTAAAACATTGTTTGTTTACCCTTTACCTA-CCATTCATTTTCATC---------T-----AGGT-------TAACT--T--TAAA-----AT--T-TA---TATTTTACATTTTGCATTTTATCAGAAAAAGCAT---CTTATAATTA-TA----TTTCCTTA--GCACATTTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGTACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTTGAACTCAAGTTGCCCA----AGCTACA---TTCTGCAG-----ATATAACACAAACATTGGATATAATCCAACATTTTAGCAATGATGAA-CAATAAAACTAAATATTT---G------------TTTG-G-G-A-------A--TGCAA--T-TAAATTATTA---G---AGT-TG-G-G-CAATATT---AT----CAGTTTG---GTAAGT-A-----A-C--G-A-CAAACAGACAATA-TTTTATTTTAGGCC
gi|1 : GCCTAAATTGAAATACTGTTTATTTGTCCTTTACCTA-CCCATCATTTTCATCTTGGGTAGGT-----AGGT-------AAATT--T--TTAT-----A---T-TA---TATTTAACATTTTGTGTTTTGTTGGACATAACAT---CT
gi|1 : tGCCTAAA--GATGCA--GTTTGTTTGTCCTTTACCTA-CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|7 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaGCCTAAAATGAAATTTTGTTTGTTTGTCCTTCACTTA-CCc
gi|9 : agatatcacagaaacgtttgatatccaatattttggctatgacaaaacaataaaataatcatttgtttggtaatgcaatttaattattcgcataggggcagtattattgggtaGCCTAAAATCAAATATTGTTTGTTTTTCCTTTATCTA-CC
gi|11 : ccgcaggtataacacaaacgtgggacaatggcaacaacaaacaataaaaataattatgtttgaggaatgcaataaaattattagaatagtggcaatattatcaagtaGCCTAAATTAAAATACTGTTTGTTTGTCCTGTGTCTA-c
gi|12 : tccaatattttggcaatgacaaacaataatggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtaGCCTAAATTAAAATATTGTTTGTTTGTCCTTTACCCATCCA-TCATTTTTATCT--------T-----GGGTCGGTGTGTAAATTAT--TAAA-----AT--A-TA---TG------ATTTTGTGTTTTGTCAGA-----------CTGATAATTC-CC----TTTTCCTAGTGCACATTATCc
gi|17 : aggGCCTAAATTAAAATATTGTTTGCGTGTCCTTTACCTA-CCCGTCATTTTGATC---------T-----TGGG-------TA
gi|16 : agGCCTGAAATAAAATATTGTTTGTTTATCCTTAACCTA--CATTCg
gi|14 : tgcaataaagatattttggacaatgttatcagGCCTAAATTAAAATATGGTTTGTTTG---TTT---CA-TCATTCATTTTTGGG---------T-----AGG--------TAAGT-------AA-----ATTAT-TA---TATCTTACATTTTGTGTTTGGTCAGACATATCATCAACTT---ATTG-TAACCTTTTCCAT---GCACA
gi|10 : aagGCCTAAATTAAAAAAATGTTTTGTTGTCCTTTACCTA-TCCGTCATTTTCATC---------TTATGAAGGTAGG----TAAAT--T-----------AT--TGTACTTTATTCTATATTTTGTGTTTCATT-GACATAATGT---CTTATTATGA-CC----TTTTCCTT--GCACTTTATC
gi|3 : CCTAAATTAAAATATTATTTGTTTACCATTTACCTA-CCATTTATTTCGATC---------T-----AGAT-------TAACT--T--TAAA-----AT--T-TA---TATTTTACATTTTGCATTTAATCGGAAATAGCGT---TTTATAATTA-TA----TTTCCTTA--GCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAG------AAAATTATAATTCTTGTCACAGGATT
gi|5 : CTTAAAT-AAAGTATTGT--GTTTGCTCTTTACCTA-CC
gi|8 : atgccagggaaacgattaaaaaggctttatatcacaggatgcaaacttaaattcccatgcgacaatctgctgcagtgtatatataacggaagtgttgaatattatccatcagtttggcaacagcaatcaataaaacaattttggacatttacaaaattaacagtagtccagtaAAATAAAAATATTATTTGTTTCCTCTTTACCAA-CCacc
gi|4 : aacagaaacgtggggtattaaccgatattttggcaatgactaacaataaaaacaaataatttttggcgaatgcagtatgattattagagtaggggcaaaattgttgggcaAAAGTATGGTTTGTTTGTCCTTTACCTA-TCtaa
gi|13 : ttgccagagaaatgatcagaaaagtataattcttgttacatgatttgaactaggatcgtccaagcgtatgtaacaggaatgccggatattatccaacattttggcaatgacaaacaataaaaacaatttggggaggggtggatgcaataaaattattagagttggagcaattttattgggtaAAGATATCAGTTGCGTGTCCTTTACCTATCCAT-CATTTTAATC---------T-----TGGG-------TAGGT--TGGTAAATTGTTATA-T-TA---TATTTTACATTTTGTGTTTT-T-------AACGT---ATTATTATTACCA----TTGCCTT---GCACActtc
gi|1 : taataaACAGAAAATAATGCTGCCAGGGAAAGGAACAAAAATGTATTAAAA----AATTCTTGTCACGGGATTCGAACTCTGTTCGCCAA----AGTGACT---ATCCGAAG-----ATATAACAGAAACGTCAGGTATTATACAACATTTTGGCAATGACAAA-CATCAA----AAATATTTTTCT------------TTTG-A-T-T-------A--TACGA--T-ATAATTATTA---G---AGT-AGAG-G-CAATATT---AT----CGGGTAG---GTAGGTAA-----A-G--G-A-CAAACAAACTGCA-T----CTTTAGGCCccatctc
gi|4 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaTTGCCAGAGAAATGATCAGAAA------AG---TATAATTCTTGTTACATGATTTGAACTAGGATCGTCCA----AGC-----------GTA-------TGTAACAGGAATGCCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAACA---ATTT---G---------------G-G-G-AGGGGTGGA--TGCAA--T-AAAATTATTA---G---AGT-TG-GAG-CAATTTT---AT----TGGGTAG---ATAGGTAA-----A-G--G-A-CAAACAAACCATA-CTTTCT
gi|15 : TTGCCAGGGAAATGAAT--AAA------AAAA-TATAATTCCTGACACTGGATT----CT--AATTGCCCATTATAGTAACA---ATTCACAG-----ATATc
gi|5 : TGCCAGGGAAACGATTAAAAA------GGC-------TTTATATCACAGGATGCAAACTTAAATT-CCCA----TGCGACAATCTGCTGCAGTGTATATATAACGGAAGTGTTGAATATTATCCATCAGTTTGGCAACAGCAAT-CAATAAAAC--AAT--------------------TTTG-G-A-C-------ATTTACA------AAATTAACA---GT--AGT-C------CAGTA-----------------G---GTAGGT-A-----A-A--G-AGCAAAC--ACAATA-CTTTATTTAAGACC
gi|9 : aCCGCAG-----GTATAACACAAACGTGGGA-------CAA-----TGGCAACAACAAA-CAATAAAAATAATTAT-----G------------TTTGAG-G-A-------A--TGCAA--T-AAAATTATTA---G---AAT-AGTG-G-CAATATT---AT----CAAGTAG---GTAGAT-A-----A-A--GGA-AAAACAAACAATA-TTTGATTTTAGGCC
gi|7 : AG-----ATATCACAGAAACGTTTGATAT---CCAATATTTTGGCTATGACAAAACAATAAAA-TAATCATTT---G------------TTTG-G-T-A-------A--TGCAA--T-TTAATTATTC---GCATAG---G-G-G-CAGTATT---AT----TGGGTAG---GTAAGTGA-----A-G--G-A-CAAACAAACAAAA-TTTCATTTTAGGC
gi|6 : AG-----ACATAACAAAAACATCAGACAATATCCAACATTTTGGCAATGACAAA-CAATAAAAATAA---TTT---GGGTGGGGGGTGGTGTG-G-GTA-------A--TGAAA--T-AAAATTATTA---G---AGT-TG-G-GGCAATAT-----------AACTGG---GCAAAT-AGGTAAA-G--G-A-CAAACAAACAATA-TTTTATGTTAG
gi|8 : aAACAGAAACGTGGGGTATTAACCGATATTTTGGCAATGACTAA-CAATAAAAACAAATAATT----------------TTTG-GCG-A-------A--TGCAG--T-ATGATTATTA---G---AGTAGG-G-G-CAAAATT---GTTGGGCAGGTTG---GTAAA--G-----A-G--G----AAACAAATAATATTTTTATTTTA
gi|11 : TCCAATATTTTGGCAATGACAAA-CAATAAa
gi|11 : G-G-G-G-------A--TGCAA--T-AAAATTATTATTAG---AGTAGG-G-G-CAATATT---AT--------TGG---GTAAGT-ATAGACA-CAGG-A-CAAACAAACAGTA-TTTTAATTTAGGCCtggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtatagacacaggacaaacaaacagtattttaatttaggcc
gi|3 : tccaatattttggcaatgacaaacaataatggtgggagaaggggggggggg-A-------A--TGTAAAATATAAATT-TTA---A---AGT-TA-A-T-CTAGATCGAAAT----AAAT--G---GTAGGT-A-----AAT--G-G-TAAACAAATAATA-TTTTAATTTAGG
gi|16 : --TGCAA--T-AAAGATATT----------T-TG-G-A-CAATGTT---AT----CAG---GAATGTAGGTTA-----A-G--G-A-TAAACAAACAATA-TTTTATTTCAGGCttgcatttaatcggaaatagcgttttataattatatttccttagcacattatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatggccttttattgagacaagaaatagataatgaagcactcaggacagaaatagtgttgccagagaaatgaacaaaagaaaattataattcttgtcacaggatt
gi|1 : G---GTAGGT-A-----A-A--GGA-CAAATAAACAGTA-TTTCAATTTAGGC
gi|12 : tG---GTAA---------A-G--G-A-CAAACAAACAATA-TTTTAATTTAGGCCcatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|17 : agG---GTAGGT-A-----A-A--GGA-CACGCAAACAATA-TTTTAATTTAGGCCcatccatcatttttatcttgggtcggtgtgtaaattattaaaatatatgattttgtgttttgtcagactgataattcccttttcctagtgcacattatc
gi|14 : a-A-CAAACAAACCATA-TTTTAATTTAGGCCcgtcattttgatcttgggtag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TATAGCTTTTGTAAGAAAAGCTGATCATGAAGTTCTCAAACCAAGAAAAATCAAT
Alignments
lowQualScore : 1 1 333333333333333333333333333333333333333333333333333 111 11111 111 111 77777777777777777777777777777777777777777777777777777777777777777777777 222222222222 1111 11111 3333333333333333333333333333333333333333 2
lowQualScore : 0 2 1 555555555555555555555555555555555555555555555555555 000 00000 7 2 0 000 1 6 3 777 11111111111111111111111111111111111111111111111111111111111111111111111 2 7 7 444444444444 0 999 7777 0 22 1 888 22222 2 3 0 2 4 5555555555555555555555555555555555555555 777 99 99999 55 0 4 4 8 4 1
lowQualScore : . . . ................................................... ... ..... . . . ... . . . ... ....................................................................... . . . ............ . ... .... . .. . ... ..... . . . . . ........................................ ... .. ..... .. . . . . . .
lowQualScore : 0 5 0 000000000000000000000000000000000000000000000000000 000 44444 9 4 4 000 0 7 0 000 00000000000000000000000000000000000000000000000000000000000000000000000 5 3 3 888888888888 8 000 0000 8 00 0 888 55555 2 4 9 4 4 9999999999999999999999999999999999999999 000 00 11111 55 0 0 0 0 0 0
consensus : GCCTAAATTAAAATATTGTTTGTTTGTCCTTTACCTA-CCANTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTA-CNTTTCCCTA--GCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
Reference ( family-1171 ) : GCCTAAATTAAAATATTGTTTGTTTGTCCTTTACCTA-CCATTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGTGTTTCGTCGGACATAACGT---CTTATNATTA-CATTTCCCTA--GCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTNNGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAACGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTANTTTAGGCC
gi|1 : GCCTAAATTGAAATACTGTTTATTTGTCCTTTACCTA-CCCATCATTTTCATCTTGGGTAGGT-----AGGT-------AAATT--T--TTAT-----A--T--TA---TATTTAACATTTTGTGTTTTGTTGGACATAACAT---CT
gi|1 : tACAGAAAATAATGCTGCCAGGGAAAGGAACAAAAATGTATTAAAA----AATTCTTGTCACGGGATTCGAACTCTGTTCGCCAA----AGTGACTATCCGA---AG-----ATATAACAGAAACGTCAGGTATTATACAACATTTTGGCAATGACAAA-CATCAAAAAT--ATTTTTC------------TTT--T-G-ATT-----ATACGATATAATTATTA---GAGT-AGAG-G-CAATATTATCGGGTAGGTA--GGTAA-A-GGA-CAAACAAACTGCA-T----CTTTAGGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|10 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaGCCTAAATTAAAAAAATGTTTTGTTGTCCTTTACCTA-TCCGTCATTTTCATC---------TTATGAAGGTAGG----TAAAT--T-----------AT-TG-TACTTTATTCTATATTTTGTGTTTCATT-GACATAATGT---CTTATTATGA-CCTTTTCCTT--GCACTTTATC
gi|11 : TCCAATATTTTGGCAATGACAAA-CAATAA
gi|11 : G-G-G-G-------ATGCAATAAAATTATTATTAGAGT-AG-G-GGCAATATTATTGGGTAAGTATAGAC-ACA-GGA-CAAACAAACAGTA-TTTTAATTTAGGCCtggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtatagacacaggacaaacaaacagtattttaatttaggcc
gi|12 : tccaatattttggcaatgacaaacaataatggtgggagaagggggggggggGCCTAAATTAAAATATTGTTTGTTTGTCCTTTACCCATCCA-TCATTTTTATCT--------T-----GGGTCGGTGTGTAAATTAT--TAAA-----AT-A--TA---TG------ATTTTGTGTTTTGTCAGA-----------CTGATAATTC-CCTTTTCCTAGTGCACATTATC
gi|13 : aggAAGATATCAGTTGCGTGTCCTTTACCTATCCA-TCATTTTAATC---------T-----TGGG-------TAGGT--TGGTAAATTGTTATAT--TA---TATTTTACATTTTGTGTTTT--------TAACGT---ATTATTATTACCATTGCCTT---GCACACCATCT
gi|14 : taataaGCCTAAATTAAAATATGGTTTGTTTGT---TT---CA-TCATTCATTTTTGGG---------T-----AGGT--------AAGT-------AA-----AT-TATTA---TATCTTACATTTTGTGTTTGGTCAGACATATCATCAACTTATTGTAA-CCTTTTCCAT--GCACAc
gi|15 : aagTTGCCAGGGAAATGAAT--AAA------AAAA-TATAATTCCTGACACTGGATTCTA------ATTGCCCATTATAGTAACAATTCAC---AG-----ATAT
gi|16 : TGCAATAAAGATATT-------T-TG-G-A-CAATGTTATCAGGAATGTA--GGTTA-A-GGA-TAAACAAACAATA-TTTTATTTCAGGC
gi|17 : GCCTAAATTAAAATATTGTTTGCGTGTCCTTTACCTA-CCCGTCATTTTGATC---------T-----TGGG-------TA
gi|2 : agGCCTAAATTAAAACATTGTTTGTTTACCCTTTACCTA-CCATTCATTTTCATC---------T-----AGGT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTTATCAGAAAAAGCAT---CTTATAATTA-TATTTCCTTA--GCACATTTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGTACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTTGAACTCAAGTTGCCCA----AGCTACATTCTGC---AG-----ATATAACACAAACATTGGATATAATCCAACATTTTAGCAATGATGAA-CAATAAAACTAAATATTTG------------TTTG-G-G-A-------ATGCAATTAAATTATTA---GAGT-TG-G-G-CAATATTATCAGTTTGGTA--AGT-A-A-CGA-CAAACAGACAATA-TTTTATTTTAGGCCg
gi|3 : CCTAAATTAAAATATTATTTGTTTACCATTTACCTA-CCATTTATTTCGATC---------T-----AGAT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTAATCGGAAATAGCGT---TTTATAATTA-TATTTCCTTA--GCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAG-AAATAGTGTTGCCAGAGAAATGAACAAAAG------AAAATTATAATTCTTGTCACAGGATT
gi|4 : TTGCCAGAGAAATGATCAGAAA------AG---TATAATTCTTGTTACATGATTTGAACTAGGATCGTCCA----AGCG----T--------------ATGTAACAGGAATGCCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAACA---ATTTG---------------G-G-G-AGGGGTGGATGCAATAAAATTATTA---GAGT-TG-GAG-CAATTTTATTGGGTAGATA--GGTAA-A-GGA-CAAACAAACCATA-CTTT
gi|5 : TGCCAGGGAAACGATTAAAAA------GGC-------TTTATATCACAGGATGCAAACTTAAATT-CCCA----TGCGACAATCTGCTGCAGTGTATATATAACGGAAGTGTTGAATATTATCCATCAGTTTGGCAACAGCAAT-CAATAAAA--CAAT-----------------TTTG-G-A-C-------ATTT-ACAAAATTA--A---CAGT-AG-------------TCCAGTAGGTA--GGT-A-A-AGAGCAAAC--ACAATA-CTTTATTTAAGACCcttc
gi|6 : a---AG-----ACATAACAAAAACATCAGACAATATCCAACATTTTGGCAATGACAAA-CAATAAAAATAA---TTTGGGTGGGGGGTGGTGTG-G-GTA-------ATGAAATAAAATTATTA---GAGT-TG-G-GGCAATATAACTGGGCAAATA--GGT-A-AAGGA-CAAACAAACAATA-TTTTATGTTAG
gi|7 : a---AG-----ATATCACAGAAACGTTTGATAT---CCAATATTTTGGCTATGACAAAACAATAAAA-TAATCATTTG------------TTTG-G-T-A-------ATGCAATTTAATTATTC---GCATAGG-G-G-CAGTATTATTGGGTAGGTA--AGTGA-A-GGA-CAAACAAACAAAA-TTTCATTTTAGGC
gi|8 : AACAGAAACGTGGGGTATTAACCGATATTTTGGCAATGACTAA-CAATAAAAACAAATAATT-------------TTTG-GCG-A-------ATGCAGTATGATTATTA---GAGTAGG-G-G-CAAAATTGTTGGGCAGGTT--GGT-A-A-AGAGGAAACAAATAATATTTTTATTTTA
gi|9 : CCGC---AG-----GTATAACACAAACGTGGGA-------CAA-----TGGCAACAACAAA-CAATAAAAATAATTA--TG------------TTTGAG-G-A-------ATGCAATAAAATTATTA---GAAT-AGTG-G-CAATATTATCAAGTAGGTA--GATAA-A-GGA-AAAACAAACAATA-TTTGATTTTAGGCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TATAGCTTTTGTAAGAAAAGCTGATCATGAAGTTCTCAAACCAAGAAAAATCAAT
Alignments
lowQualScore : 1111 333333333333333333333333333333333333333333333333333 111 111 111 666666666666666666666666666666666666666666666666666666666666666666666 222222222222 111 1111 11111 3333333333333333333333333333333333333333 1
lowQualScore : 0000 0 77 1 555555555555555555555555555555555555555555555555555 000 1 44 7 7 2 0 000 1 1 2 333 999999999999999999999999999999999999999999999999999999999999999999999 1 7 7 444444444444 0 111 7777 0 22 1 888 22222 2 3 0 4 5555555555555555555555555555555555555555 777 99 99999 55 6 4 8 8 4
lowQualScore : .... . .. . ................................................... ... . .. . . . . ... . . . ... ..................................................................... . . . ............ . ... .... . .. . ... ..... . . . . ........................................ ... .. ..... .. . . . . .
lowQualScore : 6666 8 00 0 000000000000000000000000000000000000000000000000000 000 4 33 6 9 4 4 000 0 0 2 222 000000000000000000000000000000000000000000000000000000000000000000000 0 3 3 888888888888 8 000 0000 8 00 0 888 55555 2 4 9 4 9999999999999999999999999999999999999999 000 00 11111 55 0 0 0 0 0
consensus : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCTN--GCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
Reference ( family-1171 ) : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCANTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACNTTTCCCTA--GCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
gi|1 : GCCTAAATTGAAATACTGTT----TATTTGTCCTTTACCTACCCATCATTTTCATCTTGGGTAGGT-----AGGT-------AAATT--T--TTAT-----A--T--TA---TATTTAACATTTTGTGTTTTGTTGGACATAACAT---CT
gi|1 : tACAGAAAATAATGCTGCCAGGGAAAGGAACAAAAATGTATTAAAA----AATTCTTGTCACGGGATTCGAACTCTGTTCGCCAA----AGTGACTATCCGA---AG-----ATATAACAGAAACGTCAGGTATTATACAACATTTTGGCAATGACAAA-CATCAAAAAT--ATTTTTC------------TTT--T-G-ATT-----ATACGATATAATTATTA---GAGT-AGAG-G-CAATATTATCGGGTAGGTA--GGTAA-A-GGA-CAAACAAACTGCA-T----CTTTAGGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|10 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaGCCTAAATTAAAAAAATGTT----TTGTTGTCCTTTACCTATCCGTCATTTTCATC---------TTATGAAGGTAGG----TAAAT--T-----------AT-TG-TACTTTATTCTATATTTTGTGTTTCATT-GACATAATGT---CTTATTATGACCTTTTCCTT--GCACTTTATC
gi|11 : TCCAATATTTTGGCAATGACAAA-CAATAA
gi|11 : G-G-G-G-------ATGCAATAAAATTATTATTAGAGT-AG-G-GGCAATATTATTGGGTAAGTATAGAC-ACA-GGA-CAAACAAACAGTA-TTTTAATTTAGGCCtggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtatagacacaggacaaacaaacagtattttaatttaggcc
gi|12 : tccaatattttggcaatgacaaacaataatggtgggagaagggggggggggGCCTAAATTAAAATATTGTTTGTT----TGTCCTTTACCCATCCATCATTTTTATCT--------T-----GGGTCGGTGTGTAAATTAT--TAAA-----AT-A--TA---TG------ATTTTGTGTTTTGTCAGA-----------CTGATAATTCCCTTTTCCTAGTGCACATTATC
gi|13 : aggAAGATATCAGT----TGCGTGTCCTTTACCTATCCATCATTTTAATC---------T-----TGGG-------TAGGT--TGGTAAATTGTTATAT--TA---TATTTTACATTTTGTGTTTT--------TAACGT---ATTATTATTACCATTGCCTT--GCACACCATCT
gi|14 : taataaGCCTAAATTAAAATATGGTT----TGTTTGT---TT---CATCATTCATTTTTGGG---------T-----AGGT--------AAGT-------AA-----AT-TATTA---TATCTTACATTTTGTGTTTGGTCAGACATATCATCAACTTATTGTAACCTTTTCCAT--GCACAc
gi|15 : aagTTGCCAGGGAAATGAAT--AAA------AAAA-TATAATTCCTGACACTGGATTCTA------ATTGCCCATTATAGTAACAATTCAC---AG-----ATAT
gi|16 : TGCAATAAAGATATT-------T-TG-G-A-CAATGTTATCAGGAATGTA--GGTTA-A-GGA-TAAACAAACAATA-TTTTATTTCAGGC
gi|17 : GCCTAAATTAAAATATTGTT----TGCGTGTCCTTTACCTACCCGTCATTTTGATC---------T-----TGGG-------TA
gi|2 : agGCCTAAATTAAAACATTGTT----TGTTTACCCTTTACCTACCATTCATTTTCATC---------T-----AGGT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTTATCAGAAAAAGCAT---CTTATAATTATATTTCCTTA--GCACATTTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGTACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTTGAACTCAAGTTGCCCA----AGCTACATTCTGC---AG-----ATATAACACAAACATTGGATATAATCCAACATTTTAGCAATGATGAA-CAATAAAACTAAATATTTG------------TTTG-G-G-A-------ATGCAATTAAATTATTA---GAGT-TG-G-G-CAATATTATCAGTTTGGTA--AGT-A-A-CGA-CAAACAGACAATA-TTTTATTTTAGGCCg
gi|3 : CCTAAATTAAAATATTATT----TGTTTACCATTTACCTACCATTTATTTCGATC---------T-----AGAT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTAATCGGAAATAGCGT---TTTATAATTATATTTCCTTA--GCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAG-AAATAGTGTTGCCAGAGAAATGAACAAAAG------AAAATTATAATTCTTGTCACAGGATT
gi|4 : TTGCCAGAGAAATGATCAGAAA------AG---TATAATTCTTGTTACATGATTTGAACTAGGATCGTCCA----AGCG----T--------------ATGTAACAGGAATGCCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAACA---ATTTG---------------G-G-G-AGGGGTGGATGCAATAAAATTATTA---GAGT-TG-GAG-CAATTTTATTGGGTAGATA--GGTAA-A-GGA-CAAACAAACCATA-CTTTCTT
gi|5 : TGCCAGGGAAACGATTAAAAA------GGC-------TTTATATCACAGGATGCAAACTTAAATT-CCCA----TGCGACAATCTGCTGCAGTGTATATATAACGGAAGTGTTGAATATTATCCATCAGTTTGGCAACAGCAAT-CAATAAAA--CAAT-----------------TTTG-G-A-C-------ATTT-ACAAAATTA--A---CAGT-AG-------------TCCAGTAGGTA--GGT-A-A-AGAGCAAAC--ACAATA-CTTTATTTAAGACCc
gi|6 : a---AG-----ACATAACAAAAACATCAGACAATATCCAACATTTTGGCAATGACAAA-CAATAAAAATAA---TTTGGGTGGGGGGTGGTGTG-G-GTA-------ATGAAATAAAATTATTA---GAGT-TG-G-GGCAATATAACTGGGCAAATA--GGT-A-AAGGA-CAAACAAACAATA-TTTTATGTTAG
gi|7 : a---AG-----ATATCACAGAAACGTTTGATAT---CCAATATTTTGGCTATGACAAAACAATAAAA-TAATCATTTG------------TTTG-G-T-A-------ATGCAATTTAATTATTC---GCATAGG-G-G-CAGTATTATTGGGTAGGTA--AGTGA-A-GGA-CAAACAAACAAAA-TTTCATTTTAGGC
gi|8 : AACAGAAACGTGGGGTATTAACCGATATTTTGGCAATGACTAA-CAATAAAAACAAATAATT-------------TTTG-GCG-A-------ATGCAGTATGATTATTA---GAGTAGG-G-G-CAAAATTGTTGGGCAGGTT--GGT-A-A-AGAGGAAACAAATAATATTTTTATTTTA
gi|9 : CCGC---AG-----GTATAACACAAACGTGGGA-------CAA-----TGGCAACAACAAA-CAATAAAAATAATTAT--G------------TTTGAG-G-A-------ATGCAATAAAATTATTA---GAAT-AGTG-G-CAATATTATCAAGTAGGTA--GAT-A-AAGGA-AAAACAAACAATA-TTTGATTTTAGGCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TATAGCTTTTGTAAGAAAAGCTGATCATGAAGTTCTCAAACCAAGAAAAATCAAT
Alignments
lowQualScore : 1111 333333333333333333333333333333333333333333333333333 111 111 111 666666666666666666666666666666666666666666666666666666666666666666666 222222222222 111 1111 11111 3333333333333333333333333333333333333333 1
lowQualScore : 0000 0 2 1 1 555555555555555555555555555555555555555555555555555 000 1 44 7 7 2 0 000 1 000 999999999999999999999999999999999999999999999999999999999999999999999 1 7 7 444444444444 0 111 7777 0 22 1 888 22222 2 3 0 4 5555555555555555555555555555555555555555 777 99 99999 55 6 4 8 8 4
lowQualScore : .... . . . . ................................................... ... . .. . . . . ... . ... ..................................................................... . . . ............ . ... .... . .. . ... ..... . . . . ........................................ ... .. ..... .. . . . . .
lowQualScore : 6666 8 2 0 0 000000000000000000000000000000000000000000000000000 000 4 33 6 9 4 4 000 0 222 000000000000000000000000000000000000000000000000000000000000000000000 0 3 3 888888888888 8 000 0000 8 00 0 888 55555 2 4 9 4 9999999999999999999999999999999999999999 000 00 11111 55 0 0 0 0 0
consensus : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
Reference ( family-1171 ) : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--NGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
gi|1 : GCCTAAATTGAAATACTGTT----TATTTGTCCTTTACCTACCCATCATTTTCATCTTGGGTAGGT-----AGGT-------AAATT--T--TTAT-----A--T--TA---TATTTAACATTTTGTGTTTTGTTGGACATAACAT---CT
gi|1 : tACAGAAAATAATGCTGCCAGGGAAAGGAACAAAAATGTATTAAAA----AATTCTTGTCACGGGATTCGAACTCTGTTCGCCAA----AGTGACTATCCGA---AG-----ATATAACAGAAACGTCAGGTATTATACAACATTTTGGCAATGACAAA-CATCAAAAAT--ATTTTTC------------TTT--T-G-ATT-----ATACGATATAATTATTA---GAGT-AGAG-G-CAATATTATCGGGTAGGTA--GGTAA-A-GGA-CAAACAAACTGCA-T----CTTTAGGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|10 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaGCCTAAATTAAAAAAATGTT----TTGTTGTCCTTTACCTATCCGTCATTTTCATC---------TTATGAAGGTAGG----TAAAT--T-----------AT-TG-TACTTTATTCTATATTTTGTGTTTCATT-GACATAATGT---CTTATTATGACCTTTTCCT--TGCACTTTATC
gi|11 : TCCAATATTTTGGCAATGACAAA-CAATAA
gi|11 : G-G-G-G-------ATGCAATAAAATTATTATTAGAGT-AG-G-GGCAATATTATTGGGTAAGTATAGAC-ACA-GGA-CAAACAAACAGTA-TTTTAATTTAGGCCtggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtatagacacaggacaaacaaacagtattttaatttaggcc
gi|12 : tccaatattttggcaatgacaaacaataatggtgggagaagggggggggggGCCTAAATTAAAATATTGTTTGTT----TGTCCTTTACCCATCCATCATTTTTATCT--------T-----GGGTCGGTGTGTAAATTAT--TAAA-----AT-A--TA---TG------ATTTTGTGTTTTGTCAGA-----------CTGATAATTCCCTTTTCCTAGTGCACATTATC
gi|13 : aggAAGATATCAGT----TGCGTGTCCTTTACCTATCCATCATTTTAATC---------T-----TGGG-------TAGGT--TGGTAAATTGTTATAT--TA---TATTTTACATTTTGTGTTTT--------TAACGT---ATTATTATTACCATTGCCT--TGCACACCATCT
gi|14 : taataaGCCTAAATTAAAATATGGTT----TGTTTGT--TTCATC-A---TTCATTTTTGGG---------T-----AGGT--------AAGT-------AA-----AT-TATTA---TATCTTACATTTTGTGTTTGGTCAGACATATCATCAACTTATTGTAACCTTTTCCA--TGCACAc
gi|15 : aagTTGCCAGGGAAATGAAT--AAA------AAAA-TATAATTCCTGACACTGGATTCTA------ATTGCCCATTATAGTAACAATTCAC---AG-----ATAT
gi|16 : TGCAATAAAGATATT-------T-TG-G-A-CAATGTTATCAGGAATGTA--GGTTA-A-GGA-TAAACAAACAATA-TTTTATTTCAGGC
gi|17 : GCCTAAATTAAAATATTGTT----TGCGTGTCCTTTACCTACCCGTCATTTTGATC---------T-----TGGG-------TA
gi|2 : agGCCTAAATTAAAACATTGTT----TGTTTACCCTTTACCTACCATTCATTTTCATC---------T-----AGGT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTTATCAGAAAAAGCAT---CTTATAATTATATTTCCTT--AGCACATTTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGTACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTTGAACTCAAGTTGCCCA----AGCTACATTCTGC---AG-----ATATAACACAAACATTGGATATAATCCAACATTTTAGCAATGATGAA-CAATAAAACTAAATATTTG------------TTTG-G-G-A-------ATGCAATTAAATTATTA---GAGT-TG-G-G-CAATATTATCAGTTTGGTA--AGT-A-A-CGA-CAAACAGACAATA-TTTTATTTTAGGCCg
gi|3 : CCTAAATTAAAATATTATT----TGTTTACCATTTACCTACCATTTATTTCGATC---------T-----AGAT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTAATCGGAAATAGCGT---TTTATAATTATATTTCCTT--AGCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAG-AAATAGTGTTGCCAGAGAAATGAACAAAAG------AAAATTATAATTCTTGTCACAGGATT
gi|4 : TTGCCAGAGAAATGATCAGAAA------AG---TATAATTCTTGTTACATGATTTGAACTAGGATCGTCCA----AGCG----T--------------ATGTAACAGGAATGCCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAACA---ATTTG---------------G-G-G-AGGGGTGGATGCAATAAAATTATTA---GAGT-TG-GAG-CAATTTTATTGGGTAGATA--GGTAA-A-GGA-CAAACAAACCATA-CTTTCTT
gi|5 : TGCCAGGGAAACGATTAAAAA------GGC-------TTTATATCACAGGATGCAAACTTAAATT-CCCA----TGCGACAATCTGCTGCAGTGTATATATAACGGAAGTGTTGAATATTATCCATCAGTTTGGCAACAGCAAT-CAATAAAA--CAAT-----------------TTTG-G-A-C-------ATTT-ACAAAATTA--A---CAGT-AG-------------TCCAGTAGGTA--GGT-A-A-AGAGCAAAC--ACAATA-CTTTATTTAAGACCc
gi|6 : a---AG-----ACATAACAAAAACATCAGACAATATCCAACATTTTGGCAATGACAAA-CAATAAAAATAA---TTTGGGTGGGGGGTGGTGTG-G-GTA-------ATGAAATAAAATTATTA---GAGT-TG-G-GGCAATATAACTGGGCAAATA--GGT-A-AAGGA-CAAACAAACAATA-TTTTATGTTAG
gi|7 : a---AG-----ATATCACAGAAACGTTTGATAT---CCAATATTTTGGCTATGACAAAACAATAAAA-TAATCATTTG------------TTTG-G-T-A-------ATGCAATTTAATTATTC---GCATAGG-G-G-CAGTATTATTGGGTAGGTA--AGTGA-A-GGA-CAAACAAACAAAA-TTTCATTTTAGGC
gi|8 : AACAGAAACGTGGGGTATTAACCGATATTTTGGCAATGACTAA-CAATAAAAACAAATAATT-------------TTTG-GCG-A-------ATGCAGTATGATTATTA---GAGTAGG-G-G-CAAAATTGTTGGGCAGGTT--GGT-A-A-AGAGGAAACAAATAATATTTTTATTTTA
gi|9 : CCGC---AG-----GTATAACACAAACGTGGGA-------CAA-----TGGCAACAACAAA-CAATAAAAATAATTAT--G------------TTTGAG-G-A-------ATGCAATAAAATTATTA---GAAT-AGTG-G-CAATATTATCAAGTAGGTA--GAT-A-AAGGA-AAAACAAACAATA-TTTGATTTTAGGCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TATAGCTTTTGTAAGAAAAGCTGATCATGAAGTTCTCAAACCAAGAAAAATCAAT
Alignments
lowQualScore : 1111 333333333333333333333333333333333333333333333333333 111 111 666666666666666666666666666666666666666666666666666666666666666666666 222222222222 111 1111 11111 3333333333333333333333333333333333333333 1
lowQualScore : 0000 0 2 1 1 555555555555555555555555555555555555555555555555555 000 1 44 7 7 2 0 000 1 99 999999999999999999999999999999999999999999999999999999999999999999999 1 7 7 444444444444 0 111 7777 0 22 1 888 22222 2 3 0 4 5555555555555555555555555555555555555555 777 99 99999 55 6 4 8 8 4
lowQualScore : .... . . . . ................................................... ... . .. . . . . ... . .. ..................................................................... . . . ............ . ... .... . .. . ... ..... . . . . ........................................ ... .. ..... .. . . . . .
lowQualScore : 6666 8 2 0 0 000000000000000000000000000000000000000000000000000 000 4 33 6 9 4 4 000 0 22 000000000000000000000000000000000000000000000000000000000000000000000 0 3 3 888888888888 8 000 0000 8 00 0 888 55555 2 4 9 4 9999999999999999999999999999999999999999 000 00 11111 55 0 0 0 0 0
consensus : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
Reference ( family-1171 ) : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
gi|1 : GCCTAAATTGAAATACTGTT----TATTTGTCCTTTACCTACCCATCATTTTCATCTTGGGTAGGT-----AGGT-------AAATT--T--TTAT-----A--T--TA---TATTTAACATTTTGTGTTTTGTTGGACATAACAT---CT
gi|1 : tACAGAAAATAATGCTGCCAGGGAAAGGAACAAAAATGTATTAAAA----AATTCTTGTCACGGGATTCGAACTCTGTTCGCCAA----AGTGACTATCCGA---AG-----ATATAACAGAAACGTCAGGTATTATACAACATTTTGGCAATGACAAA-CATCAAAAAT--ATTTTTC------------TTT--T-G-ATT-----ATACGATATAATTATTA---GAGT-AGAG-G-CAATATTATCGGGTAGGTA--GGTAA-A-GGA-CAAACAAACTGCA-T----CTTTAGGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|10 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaGCCTAAATTAAAAAAATGTT----TTGTTGTCCTTTACCTATCCGTCATTTTCATC---------TTATGAAGGTAGG----TAAAT--T-----------AT-TG-TACTTTATTCTATATTTTGTGTTTCATT-GACATAATGT---CTTATTATGACCTTTTCCT--TGCACTTTATC
gi|11 : TCCAATATTTTGGCAATGACAAA-CAATAA
gi|11 : G-G-G-G-------ATGCAATAAAATTATTATTAGAGT-AG-G-GGCAATATTATTGGGTAAGTATAGAC-ACA-GGA-CAAACAAACAGTA-TTTTAATTTAGGCCtggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtatagacacaggacaaacaaacagtattttaatttaggcc
gi|12 : tccaatattttggcaatgacaaacaataatggtgggagaagggggggggggGCCTAAATTAAAATATTGTTTGTT----TGTCCTTTACCCATCCATCATTTTTATCT--------T-----GGGTCGGTGTGTAAATTAT--TAAA-----AT-A--TA---TG------ATTTTGTGTTTTGTCAGA-----------CTGATAATTCCCTTTTCCTAGTGCACATTATC
gi|13 : aggAAGATATCAGT----TGCGTGTCCTTTACCTATCCATCATTTTAATC---------T-----TGGG-------TAGGT--TGGTAAATTGTTATAT--TA---TATTTTACATTTTGTGTTTT--------TAACGT---ATTATTATTACCATTGCCT--TGCACACCATCT
gi|14 : taataaGCCTAAATTAAAATATGGTT----TGTTTGT--TTCATC-A---TTCATTTTTGGG---------T-----AGGT--------AAGT-------AA-----AT-TATTA---TATCTTACATTTTGTGTTTGGTCAGACATATCATCAACTTATTGTAACCTTTTCCA--TGCACAc
gi|15 : aagTTGCCAGGGAAATGAAT--AAA------AAAA-TATAATTCCTGACACTGGATTCTA------ATTGCCCATTATAGTAACAATTCAC---AG-----ATAT
gi|16 : TGCAATAAAGATATT-------T-TG-G-A-CAATGTTATCAGGAATGTA--GGTTA-A-GGA-TAAACAAACAATA-TTTTATTTCAGGC
gi|17 : GCCTAAATTAAAATATTGTT----TGCGTGTCCTTTACCTACCCGTCATTTTGATC---------T-----TGGG-------TA
gi|2 : agGCCTAAATTAAAACATTGTT----TGTTTACCCTTTACCTACCATTCATTTTCATC---------T-----AGGT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTTATCAGAAAAAGCAT---CTTATAATTATATTTCCTT--AGCACATTTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGTACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTTGAACTCAAGTTGCCCA----AGCTACATTCTGC---AG-----ATATAACACAAACATTGGATATAATCCAACATTTTAGCAATGATGAA-CAATAAAACTAAATATTTG------------TTTG-G-G-A-------ATGCAATTAAATTATTA---GAGT-TG-G-G-CAATATTATCAGTTTGGTA--AGT-A-A-CGA-CAAACAGACAATA-TTTTATTTTAGGCCg
gi|3 : CCTAAATTAAAATATTATT----TGTTTACCATTTACCTACCATTTATTTCGATC---------T-----AGAT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTAATCGGAAATAGCGT---TTTATAATTATATTTCCTT--AGCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAG-AAATAGTGTTGCCAGAGAAATGAACAAAAG------AAAATTATAATTCTTGTCACAGGATT
gi|4 : TTGCCAGAGAAATGATCAGAAA------AG---TATAATTCTTGTTACATGATTTGAACTAGGATCGTCCA----AGCG----T--------------ATGTAACAGGAATGCCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAACA---ATTTG---------------G-G-G-AGGGGTGGATGCAATAAAATTATTA---GAGT-TG-GAG-CAATTTTATTGGGTAGATA--GGTAA-A-GGA-CAAACAAACCATA-CTTTCTT
gi|5 : TGCCAGGGAAACGATTAAAAA------GGC-------TTTATATCACAGGATGCAAACTTAAATT-CCCA----TGCGACAATCTGCTGCAGTGTATATATAACGGAAGTGTTGAATATTATCCATCAGTTTGGCAACAGCAAT-CAATAAAA--CAAT-----------------TTTG-G-A-C-------ATTT-ACAAAATTA--A---CAGT-AG-------------TCCAGTAGGTA--GGT-A-A-AGAGCAAAC--ACAATA-CTTTATTTAAGACCc
gi|6 : a---AG-----ACATAACAAAAACATCAGACAATATCCAACATTTTGGCAATGACAAA-CAATAAAAATAA---TTTGGGTGGGGGGTGGTGTG-G-GTA-------ATGAAATAAAATTATTA---GAGT-TG-G-GGCAATATAACTGGGCAAATA--GGT-A-AAGGA-CAAACAAACAATA-TTTTATGTTAG
gi|7 : a---AG-----ATATCACAGAAACGTTTGATAT---CCAATATTTTGGCTATGACAAAACAATAAAA-TAATCATTTG------------TTTG-G-T-A-------ATGCAATTTAATTATTC---GCATAGG-G-G-CAGTATTATTGGGTAGGTA--AGTGA-A-GGA-CAAACAAACAAAA-TTTCATTTTAGGC
gi|8 : AACAGAAACGTGGGGTATTAACCGATATTTTGGCAATGACTAA-CAATAAAAACAAATAATT-------------TTTG-GCG-A-------ATGCAGTATGATTATTA---GAGTAGG-G-G-CAAAATTGTTGGGCAGGTT--GGT-A-A-AGAGGAAACAAATAATATTTTTATTTTA
gi|9 : CCGC---AG-----GTATAACACAAACGTGGGA-------CAA-----TGGCAACAACAAA-CAATAAAAATAATTAT--G------------TTTGAG-G-A-------ATGCAATAAAATTATTA---GAAT-AGTG-G-CAATATTATCAAGTAGGTA--GAT-A-AAGGA-AAAACAAACAATA-TTTGATTTTAGGCCa
blockSeqs : TGTT T G C TTGGGTCGGTGTGTAAATTATTAAAATA CTT T CA A C A CAA A AG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G A A AAAATT CAA TTAT AA T TGC TGTAT T A A ATAATTTGGGTGGGGGGTGGTGTGGGTA TTA AG GGG TA T C A G T
blockSeqs : . T A T TTGGGTAGGTTGGTAAATTGTTATAT . T TG A C A . T . . . AAAAT AGG . AT C . . C T . ACAATTTGGGGAGGGGTGG . AG GAG . A . A G .
blockSeqs : . T A A TTATGAAGGTAGGTAAATTATTG . T GG A A T . T . AAAAT TAA . AA C . . T T . CTAAATATTTGTTTGGGA . A GGG . G . . . .
blockSeqs : . C T T TAGGTTAACTTTAAAATT . T TA G A G . A . AGT . . . C . . C T . ACAAATAATTTTTGGCGA . T TGG . . . . . .
blockSeqs : . C G G TAGATTAACTTTAAAATT . C AA . . G . A . GGC . . . T T . TAATCATTTGTTTGGTA . T GA . . . . . .
blockSeqs : . C T C TAGGTAAGTAAATTAT . C T . . . . . . G . . ATAATTATGTTTGAGGA . T GG . . . . . .
blockSeqs : . . T G . . G . . CAATTTTGGAC . A GG . . . . . .
blockSeqs : . . T GG . . . . . .
blockSeqs : . A . . . . . . .
blockSeqCons : AGAAT******* GG***
originalCons : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAA------AAAA-TATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
finalCons : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAAAGAAT-------ATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NGGG---CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TATAGCTTTTGTAAGAAAAGCTGATCATGAAGTTCTCAAACCAAGAAAAATCAAT
Alignments
lowQualScore : 1111 333333333333333333333333333333333333333333333333333 111 111 666666666666666666666666666666666666666666666666666666666666666666666 222222222 111 1111 11111 3333333333333333333333333333333333333333 1
lowQualScore : 0000 0 2 1 1 555555555555555555555555555555555555555555555555555 000 1 44 7 7 2 0 000 1 99 999999999999999999999999999999999999999999999999999999999999999999999 1 7 7 999999999 0 111 7777 0 22 1 888 22222 2 3 0 4 5555555555555555555555555555555555555555 777 99 99999 55 6 4 8 8 4
lowQualScore : .... . . . . ................................................... ... . .. . . . . ... . .. ..................................................................... . . . ......... . ... .... . .. . ... ..... . . . . ........................................ ... .. ..... .. . . . . .
lowQualScore : 6666 8 2 0 0 000000000000000000000000000000000000000000000000000 000 4 33 6 9 4 4 000 0 22 000000000000000000000000000000000000000000000000000000000000000000000 0 3 3 555555555 8 000 0000 8 00 0 888 55555 2 4 9 4 9999999999999999999999999999999999999999 000 00 11111 55 0 0 0 0 0
consensus : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAAAGAA-T---ATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
Reference ( family-1171 ) : GCCTAAATTAAAATATTGTT----TGTTTGTCCTTTACCTACCCNTCATTTTNATC---------T-----AGGT-------TAANT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCGTTTTGTCGGACATAACGT---CTTATNATTACCTTTTCCT--TGCACATTATCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGNACAGAAAATAGTGTTGCCAGGGAAATGAACAAAAAAGAA-T---ATAATTCTTGTCACAGGATTCGAACTCGGATCGCCCA----AGCGACAATCCGC---AG-----ATATAACAGAAACGTCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAATAAATATTTG------------TTTG-G-G-A-------ATGCAATAAAATTATTA---GAGT-NG-G-G-CAATATTATCGGGTAGGTA--GGT-A-A-GGA-CAAACAAACAATA-TTTTATTTTAGGCC
gi|1 : GCCTAAATTGAAATACTGTT----TATTTGTCCTTTACCTACCCATCATTTTCATCTTGGGTAGGT-----AGGT-------AAATT--T--TTAT-----A--T--TA---TATTTAACATTTTGTGTTTTGTTGGACATAACAT---CT
gi|1 : tACAGAAAATAATGCTGCCAGGGAAAGGAACAAAAATGTA-TTAAAAAATTCTTGTCACGGGATTCGAACTCTGTTCGCCAA----AGTGACTATCCGA---AG-----ATATAACAGAAACGTCAGGTATTATACAACATTTTGGCAATGACAAA-CATCAAAAAT--ATTTTTC------------TTT--T-G-ATT-----ATACGATATAATTATTA---GAGT-AGAG-G-CAATATTATCGGGTAGGTA--GGTAA-A-GGA-CAAACAAACTGCA-T----CTTTAGGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaacagaaaataatgctgccagggaaaggaacaaaaatgtattaaaaaattcttgtcacgggattcgaactctgttcgccaaagtgactatccgaagatataacagaaacgtcaggtattatacaacattttggcaatgacaaacatcaaaaatatttttcttttgattatacgatataattattagagtagaggcaatattatcgggtaggtaggtaaaggacaaacaaactgcatctttaggcc
gi|10 : tgcctaaattgaaatactgtttatttgtcctttacctacccatcattttcatcttgggtaggtaggtaaatttttatattatatttaacattttgtgttttgttggacataacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgttttgttcaaacataatttgatggatatgagaaGCCTAAATTAAAAAAATGTT----TTGTTGTCCTTTACCTATCCGTCATTTTCATC---------TTATGAAGGTAGG----TAAAT--T-----------AT-TG-TACTTTATTCTATATTTTGTGTTTCATT-GACATAATGT---CTTATTATGACCTTTTCCT--TGCACTTTATC
gi|11 : TCCAATATTTTGGCAATGACAAA-CAATAA
gi|11 : G-G-G-G-------ATGCAATAAAATTATTATTAGAGT-AG-G-GGCAATATTATTGGGTAAGTATAGAC-ACA-GGA-CAAACAAACAGTA-TTTTAATTTAGGCCtggtgggagaagggggggggggggggatgcaataaaattattattagagtaggggcaatattattgggtaagtatagacacaggacaaacaaacagtattttaatttaggcc
gi|12 : tccaatattttggcaatgacaaacaataatggtgggagaagggggggggggGCCTAAATTAAAATATTGTTTGTT----TGTCCTTTACCCATCCATCATTTTTATCT--------T-----GGGTCGGTGTGTAAATTAT--TAAA-----AT-A--TA---TG------ATTTTGTGTTTTGTCAGA-----------CTGATAATTCCCTTTTCCTAGTGCACATTATC
gi|13 : aggAAGATATCAGT----TGCGTGTCCTTTACCTATCCATCATTTTAATC---------T-----TGGG-------TAGGT--TGGTAAATTGTTATAT--TA---TATTTTACATTTTGTGTTTT--------TAACGT---ATTATTATTACCATTGCCT--TGCACACCATCT
gi|14 : taataaGCCTAAATTAAAATATGGTT----TGTTTGT--TTCATC-A---TTCATTTTTGGG---------T-----AGGT--------AAGT-------AA-----AT-TATTA---TATCTTACATTTTGTGTTTGGTCAGACATATCATCAACTTATTGTAACCTTTTCCA--TGCACAc
gi|15 : aagTTGCCAGGGAAATGAATAAAAA--AA-T---ATAATTCCTGACACTGGATTCTA------ATTGCCCATTATAGTAACAATTCAC---AG-----ATAT
gi|16 : TGCAATAAAGATATT-------T-TG-G-A-CAATGTTATCAGGAATGTA--GGTTA-A-GGA-TAAACAAACAATA-TTTTATTTCAGGC
gi|17 : GCCTAAATTAAAATATTGTT----TGCGTGTCCTTTACCTACCCGTCATTTTGATC---------T-----TGGG-------TA
gi|2 : agGCCTAAATTAAAACATTGTT----TGTTTACCCTTTACCTACCATTCATTTTCATC---------T-----AGGT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTTATCAGAAAAAGCAT---CTTATAATTATATTTCCTT--AGCACATTTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGGAGCACTCAGTACAGAAA-TAGTGTTGCCAGAGAAATGAACAAAAAAAAA-T---ATAATTCTTGTCACAGGATTTGAACTCAAGTTGCCCA----AGCTACATTCTGC---AG-----ATATAACACAAACATTGGATATAATCCAACATTTTAGCAATGATGAA-CAATAAAACTAAATATTTG------------TTTG-G-G-A-------ATGCAATTAAATTATTA---GAGT-TG-G-G-CAATATTATCAGTTTGGTA--AGT-A-A-CGA-CAAACAGACAATA-TTTTATTTTAGGCCg
gi|3 : CCTAAATTAAAATATTATT----TGTTTACCATTTACCTACCATTTATTTCGATC---------T-----AGAT-------TAACT--T--TAAA-----AT-T--TA---TATTTTACATTTTGCATTTAATCGGAAATAGCGT---TTTATAATTATATTTCCTT--AGCACATTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATGGCCTTTTATTGAGACAAGAAATAGATAATGAAGCACTCAGGACAG-AAATAGTGTTGCCAGAGAAATGAACAAAAGAAAATT---ATAATTCTTGTCACAGGATT
gi|4 : TTGCCAGAGAAATGATCAGAAAAG---T---ATAATTCTTGTTACATGATTTGAACTAGGATCGTCCA----AGCG----T--------------ATGTAACAGGAATGCCGGATATTATCCAACATTTTGGCAATGACAAA-CAATAAAAACA---ATTTG---------------G-G-G-AGGGGTGGATGCAATAAAATTATTA---GAGT-TG-GAG-CAATTTTATTGGGTAGATA--GGTAA-A-GGA-CAAACAAACCATA-CTTTCTT
gi|5 : TGCCAGGGAAACGATTAAAAAGGC----------TTTATATCACAGGATGCAAACTTAAATT-CCCA----TGCGACAATCTGCTGCAGTGTATATATAACGGAAGTGTTGAATATTATCCATCAGTTTGGCAACAGCAAT-CAATAAAA--CAAT-----------------TTTG-G-A-C-------ATTT-ACAAAATTA--A---CAGT-AG-------------TCCAGTAGGTA--GGT-A-A-AGAGCAAAC--ACAATA-CTTTATTTAAGACCc
gi|6 : a---AG-----ACATAACAAAAACATCAGACAATATCCAACATTTTGGCAATGACAAA-CAATAAAAATAA---TTTGGGTGGGGGGTGGTGTG-G-GTA-------ATGAAATAAAATTATTA---GAGT-TG-G-GGCAATATAACTGGGCAAATA--GGT-A-AAGGA-CAAACAAACAATA-TTTTATGTTAG
gi|7 : a---AG-----ATATCACAGAAACGTTTGATAT---CCAATATTTTGGCTATGACAAAACAATAAAA-TAATCATTTG------------TTTG-G-T-A-------ATGCAATTTAATTATTC---GCATAGG-G-G-CAGTATTATTGGGTAGGTA--AGTGA-A-GGA-CAAACAAACAAAA-TTTCATTTTAGGC
gi|8 : AACAGAAACGTGGGGTATTAACCGATATTTTGGCAATGACTAA-CAATAAAAACAAATAATT-------------TTTG-GCG-A-------ATGCAGTATGATTATTA---GAGTAGG-G-G-CAAAATTGTTGGGCAGGTT--GGT-A-A-AGAGGAAACAAATAATATTTTTATTTTA
gi|9 : CCGC---AG-----GTATAACACAAACGTGGGA-------CAA-----TGGCAACAACAAA-CAATAAAAATAATTAT--G------------TTTGAG-G-A-------ATGCAATAAAATTATTA---GAAT-AGTG-G-CAATATTATCAAGTAGGTA--GAT-A-AAGGA-AAAACAAACAATA-TTTGATTTTAGGCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TATAGCTTTTGTAAGAAAAGCTGATCATGAAGTTCTCAAACCAAGAAAAATCAAT