lowQualScore : 1 1 111 11 1111 1 22222222 111111111111 11111 3333333333333333333333333 33333333333333 1 11 11 1111111 4444 1 8888
lowQualScore : 4 0 2 6 7 66 22 3 0 22 444 22 2 2 2 22 7 0000 4444 22 77777 0 55 666666 0 00000000 7777 666 33 77777 22 4444 9999999999 33 111111111111 5555 2 00000 2 8888 6666666666666666666666666 88888 2 88888888888888 66666 0 2 5555 5 4 4 3 6 44 99 5555555 55 9999 5 6666 6
lowQualScore : . . . . . .. .. . . .. ... .. . . . .. . .... .... .. ..... . .. ...... . ........ .... ... .. ..... .. .... .......... .. ............ .... . ..... . .... ......................... ..... . .............. ..... . . .... . . . . . .. .. ....... .. .... . .... .
lowQualScore : 6 1 2 6 5 11 99 2 3 88 111 66 2 2 1 99 0 9999 2222 88 77777 9 88 111111 4 88888888 6666 999 11 88888 99 5555 7777777777 11 444444444444 0000 4 33333 4 2222 2222222222222222222222222 55555 4 33333333333333 77777 9 7 7777 1 9 8 1 0 33 33 3333333 00 8888 0 0000 0
consensus : GCGAAAAATAGATAT-AGTCCGAGACCCAGT-C--TATGACATTTTTAACCGG--A-C-TACAAAA-GT-TTTCCAAA-CG--TANAGCCCGA-CTA----TTTCTATGAC--TTTATATCG---AAATGGAA--CA------ATCTGAGCAAGATGTT-GG-GAG-AA--T-TTAC---G--TAGT-----TTCTT--T----GCTGAAA----------CTG--A------------ATAAAA----TTA-TG--ATTAAA-T----GAT---------A---------------AAAA----ATT-TAGAAAATGAAACTTN--A-TGTAAATTTTA-----GGTC-T----TCTGTTATTTACGGACTATAAGAATTG-AATTCGGACTATG-T---AATTT--TGGAAATGTCTCTTGTCCTGAAAAGT-TTTTGGCGC
Reference ( gi|4 ) : GCGAAAATTAGATAT-AGTCCGAAACCTAGC-C--TCTGACATTTTTAACCGG--A-A-TATGAAA-GT-TTTCCAAA-TG--TAAAGCCTGG-CTA----TTTCTATGAC--TTTATATTG---AAATTGAA--CA------ATCTGAGCAAGATGTT-TG-GAG-AA--T-TTAC---G--TAGT-----TTCTT--T----GCTGAAA----------CTG--A------------ATAAAA----TTA-TG--ATCAAA-T----GAT---------A---------------AAAA----ATT-TAGAAAA-GAAACCTT--A-TGTAAATTTTA-----GGTC-T----TCTGTCATTTACAGACTATAAGAAATG-AGTTGGGACAATG-C---AGTTT--TGGACAT-TCTCTTTTCCTGAAA--TATTTTGGCACAG
gi|3 : GCGATAAATAGACCT-AGTCCGAGACTCAGT-C--TATTACATTTTTAATCGG--A-C-TACAAAA-AT-ATTCCATA-TG--TAAAGTCAGA-CTA----TTTCTATGAC----TATATCT---CAATGGAA--CA------AACTGAGCAAGATGTT-GG-GAGAAA--T-TTAC---A--TAAT-----TTCTT--C----GCTGAAA----------CTG--A------------ATAAAT----CAA-TG--ACTAAA-T----GAT---------A---------------AAAC----ATT-TAGAAAATGATAC-------TATAAATTTTA-----CGTC-T----TCTCTTATTTTCGGACTATAAGAATTG-AATTTAGAC
gi|2 : GCGAAAAATAGGTAT-AATCTGAGAACGAGT-C--TATGACACTTTTAACTGT--A-C-TACGAAA-GTTTTTCCAAA-TG--TACAGCCTGA-CTA----TTTC--TGAC--TTTATATTG---AAA-TGAAAGCAAACTATATATGAGCAGGATATTGTG-AGA-AA--T-AGAT---G--AAGT-----TTCTT--T----ACTAAAA----------CTA--A------------AGAAAA----TTA-TC--ATGAAA-T----GAT---------A---------------AACA----G-T-TAGAAAC-GAAAATTA--A-TGTAAATTTTACTTAGGGTC-A----CCTGTCATTTACGGACTATAAGAATTG-AATCCAGACTACG-T---AATAT--TGGAAAG-TCTCTtgttaatttggaatgtctaaagttcaaagaactatagtcctgagaagttttttacac
gi|6 : tGCGAAAAGTAGATCT-AGTCCGAGACTCAGT-T--TATGACATTCTTAACCAG--A-C-T-TAAAATGT-TTTCCAAA-CA--TTTGACCCGA-CTA----TTTCTATGAC--TTCATATGG---AAATGGAA--CC------ATTCTAGCGAGATGTTGCG-AAT-GA--T-TTCC---G--TATT-----TTCTT--T----GCTGAAA----------CTA--A------------ATTAAA----T-----------AA-T-----AT---------A---------------AA----------T-GAAAA-GTAA-----------AACTTTTA-----GGTC-T----TCTGTTATTTACGGACTATAAGAATTG-AACTCTGACTATG-T---AATTT--TGGAagtccaaagtacaaaggaaaatgtttttggcactg
gi|17 : tGCAAAAAATAGAT------CCAAGACCCAGT-C--TATGACATTTTAATCTGG--T-C-TACAAAA-CT-TTTCCAAA-CG--TATAGCAAGA-CTA----TTTCTACGAC--TTCATATTG---AAATGGAA--CA------A---------GATG------AAGCAA--T-CTAC---A--TAGC-----TTCTT--T----GCTGAAA----------CTG--A------------ATAAAA----T------------------------------------------------AAA----ACT-TAG-----------------TGTAATTTTTA-----GG--------TCCATTATTTACGGACTATAAGAATTG-AATCCAGACTATG-T---GATTT--TGGA-ATGTCTCTatgttttaggccaaagtactatagtcctaaaaaaattatggcagaca
gi|8 : tctGCAAAAAATAAATAT-AGTCCAAGACCTAGT-C--TATGACATTTTTAACCCG--A-C-TACAACA-GT-TATCAAAA-T---CAA----CAA-CTA----TTTCTATGAC--TTTGTATTATCTAAATGGAA------------CTTAGCAAGATATT-GG-GAA-AA----GAAC---G--TAGT-----TTCTT--T----GTTGAAA----------ATG--A------------ATAAAA----TTA-TG----TAAA-TTTTAGGTCTGGTATAAA---------------AAAA----ATT-TACAAAagt
gi|22 : ctGCTAAAAATAGTTAC-AGTCTGAGACCCAGT-C--TGTGACATTTTTAACCAC--A-C-TACAAAA-GT-TTTCCAAA-CG--TAAAGCCCAA-ATA----TTTCTGTGAC--TTTATATctgaaagaattgaattcagactagttgtgatattttagaatatctctattccagaggagcataaaaattggtactgggaatattttgtaa
gi|21 : tGCGAAAAATAGATAT-AGTCAGAGATCAAGT-C--TACGACATTTA-AACTGG--A-C-TACAATA-TT-TTTTCAAA-CG--TATAGCCCGA-CTA----TTACTATGAC--TTTATATc
gi|25 : ctGCGAAAAACATATAT-AGCCCAAGACCAAGG-C--TATAACATTTTTGATCGG--ACA-AATGAcc
gi|11 : cagtctGCGAAAAATATATAA-AGTCAGAGACCC-GCAC--TATATCATTTTTGATCAG--A-C-TA-------T-TTTCTAAA-CC--TACAGTGTGA-TCA-----------GACTATTTATATCA---AA--TGAAGCCA------AATTCAGGAA-AGGTT-TG-Gttgaactatttatatcacaagagaccaaa
gi|10 : agtctCGAAAAATAAATAT-AGTCTGCGACCCAGT-C--TATGACATTTTTAACCAG--A-C-TACAAAT-GT-TTTCCAAA-TG--CACAGCCTGA-CTA----TTTCTATGAC------TATCA---AAATAGAA--CA------ATCTGAGCAAG-TTTC-TGAGAGAAA--T-TTTC---G--TAGA-----TTCTT--T----GTTGAAA----------CTA--A------------ATTAAA----TAA-CA--ATTAAA-G----GAT-------------------------AAAA----ATT-TAGAAAATGAAACTGA--A-TGTAAATTTTA-----GA--------TCAGTTATTTACGGATTATAAGAATTG-AAACCAGACTATG-T---AA-TT--TGGAtctctaaatataaacaagattagaatttttcacatttgatgtaaaatatgtaaccgttatttagttcttcccgtttttacgaatcaagcaaaatcaattgaggtcatatatctttgttaagtttataggtcaaagtcctgaaaagtttta
gi|7 : ctaCGAAAAATAGGTAT-AGTCCATGACCCAGC-C--CATGAAATCTTTAACCTG--A-C-TACAAAA-TT-TTTCCAAA-TG--T------------------TTCTCTGAC--TTTCTATTG---AAATGGAA--CA------ATCTTAGCAAGATGTT-GG-GAG-AAA-T-TGAC---A--TATTAAAACTTCAT--T----GTTGAAT----------TTG--A------------GTAAAA----TTA-TG--ATTAAA-T----G-T---------T---------------AAAA----ATT-TAGAAAA-GTAACTTT--ATTGTAAACTTTA-----GATC-T----GTTGTTATTTACAGACTATAAGAATTGTAATTTTGAAAGTT-CTCTAGTTTAAAGGA-----CTATAGTCCTGAAAAGT-TTTTGGCGttgtttc
gi|5 : GAAAAATAGATATTAGTCTGAGACCCAGT-C--TATGACATTTTTAACTGG--A-C-TACAAAA-AA-TTTCTAAA-TG--TATAGTCCGA-CTA----TATTTATGAC--TTTATATCG---AAATGGAA--CA------ATCTGAGCAAGATGTT-GG-GAGTAA--T-TTAT---G--TAGT-----TTCCT--T----GCTGAAA----------CTA--A------------
gi|15 : tctatAAAAT-AGATAT-AGTCCAAGACCCAGT-C--TATGACATTTTCAACCAG--A-C-TACAAAT-AT-TTTCCAAACTA--TAACACC--A-TTA----TTTCCATGAC--TTTATATCA---AAATGGAA--CA------ATCTGAGCAAGAAGTT-GG-GAG-AA--A-TT-C---GACTAGT-----TTATT--T----GCTGAAA----------CTC--A------------ATAAAA----TTA-TG--GTTAAA-T----GAT--------------------------AAA----ATTGCAGAAAATGAAA-CTTAAA-TGTTAATTTTA-----TGTC-T----TCTGTTATATACAAACTATggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaatcattactgaaactatataaaattatgatgaaatgataaaaatgtagaaaatgaaac
gi|1 : AAAAATAGATTT-AGTCCGAGACCCTGT-C--TTTGACATGTTTAACTGGGTA-A-CA--GAA-GT-TTTCCAAA-CG--TATAGCATGA-CTG----TTTCTATGAC--TTTATATCG---AAATCGAA--CA------ATGTGAGCAAGATGTT-GG-GAGAAA--T-TTAC---G--TAGT-----CAGAC--T----ACTGAAA----------TCA--AGGACCTATATTTATAGAAGTCCTTGCTGAAACCAAA-T----AAT---------ATTACGATGAAATGATAAAA----ATT-TAGAAAATGAAACTTG--A-TGTAAATTTTA-----GGGCTT----TTTTTCATTTACAGACTTTAAGAATTG-AATTCAGACTTTG-T---AATTT--AAGAAGA-TCTTTTGTCC
gi|9 : aAAAAACAGATTT-ATTCCAAGACACAGT-C--TACGACATTTTTAACCAG--A-aaagggctataattatagtcgtgaaaagttcttggcacaga
gi|12 : aaAAACT-GATAT-AGT--GAGACCCAAT-C--TATAACATTC------------A-TATGA------TTTTCAAA-CA--TAAAGTC-AA-CTA----TTTCTATGAC--TTGATATGG---AAATGGAA--CA------AGCTGGG--AGA------------AA--T-TTAC---G--T---------TGTT--C----GCAGAAA----------CTG--A------------ATAAAA----TTA-AA--ATTGAA-TAT--GAT---------A---------------AAGC-----TT-AAGAAAATGAAATTTA--A-TGTACAATTTA-----AGTC-T----TCTGTTACTTACAGACCATAAT-AATT-AATTCGGACGTTG-T---AATTT--TGGA-ATGTCTCctttatctatgactttatattatggaacaatatgagcaagatgttgtgagaaatttacataatttctttgcagaaaaagaataaaattatgattaaacaataaaactttaaaaatgaaaattaatgtaaattttaggtcttctgttatggactataacaattgaattgggactatgtcattttggaatatctcaagtctaaaggactacagatctgaaatgttttttggcac
gi|23 : AGATGT-AGTCCAAGATCCAGT-C--GATGGCATGTTTAACAGG--A-C-TAC-AAA-GT-TTTCCACA-TG--TATAG-TTGGCCTA----TTT-TATGAC--Tagacctgaaaagatttt
gi|14 : tctgaaaaaaacaacccTAT-AGTCTGATACCAAAT-C--TGTGACATTTTTAAATGC--A-C-TACAAAA-GT-TTTCCAAA-GG--TATAGCTGGA-CTA----TTTCTA--AC--TTCATACCG---AAATGGAA--CA------GTCTAAGCATAATGTT-GG-GAGAAA--T-TTAA---G--TAGT-----TTCTT--T----ACTGAAACCAAGGACCTCTG--C------------ATAAGT----CTT-TG--CTAAAACT----G-----------A---------------ATAATTTTATT-TAGAAAA-TAAAACTTA-A-TTTAAATTTTA-----GGAC-T------TGTTATTTAC-GACT
gi|13 : atataataaatAGC-CATTCTGACATTTT-AAC-GG--A-ACTACAAAA-GT-TTCCCAAA-TGGTTAA--CCCGA-CTA----TTTCTTTGAC--TTAATATCA---TAATGGAA--GA------ATCTGAGCAAGATGTT------G-AA--TATCACCCTG--TGATA----TTCTTCTT----GCTGAAA----------CTG--A------------AAAAAA----TTA-TG--ATTAAA-T----AAT-------------------------AAAA----CTT-CAGAAAATGAAACGTA--A-TGTAAATTTTA-----GGTC-TTCAGTCTGTTTTTTATGGACTACAAGCATTG-AATTCGGACgg
gi|19 : tgtaaagtccttaG--A-C-TATAAAA-GT-TTTTTAAA-TG--TATAGCCTGA-CTA----TTTCTATGAC----TATATCT---AAATGGAA--CA------ACCTGAGCAAGAT-TT-T-------A--T-GTACCA-G--TAGT-----TTCTT--T----GCTGAA
gi|16 : taattatgataataatcttaaacaaaaatgatgtaaaAA-TA--TGAAACCTCC-TTAAGTCTTTCCATAAC--TATTTAGTA---AAATAGAA--AA------ATCTGAGCT-GATG----G-GAG-AAA-T-TTAA---C--TAGT-----TTCTT--T----GCTGAAA----------CTGAAA------------ACAAAA----TT------ACCCAA-T----AAT---------G---------------TAAA----TTT-TA-------------T--A-------------------TC-C----TCTGTTATTTACGGACTATAACAATTT-AATTTGGAC--TG-T---ATTTT--TGGAAAG-TCTCT
gi|9 : tatttcatatacAACCAGA-CTT----TATCTATGAC--TTTATATT------ATGGAA--CA------ATATGAGCAAGATGTTGTG-AGA-AA--T-TTAC---A--TAAT-----TTCTT--T----GCAGAAA----------AAG--A------------ATAAAA----TTA-TG--ATTAAA-C----AAT-------------------------AAAA----CTT-TAAAAAT-GAAAATTA--A-TGTAAATTTTA-----GGTC-T----TCTG----TTATGGACTATAACAATTG-AATTGGGACTATG-T---CATTT--TGGA-ATATCTCagtccaaacgacttcaatccagtcagaagagattttcac
gi|24 : aaaaaaacagatttattccaagacacagtctacgacatttttTTATATCA---AAATTGAA--TG------ATCTGAG-----------G-AAG-AA------AC---G--TCAT-----GTCTT--T----GCCGACA----------CTG--A------------ACATAA----TTG-CA--ATAAAA-T----GAT-------------------------AAAA----CTT-TAACAAG-GAaagtctaaaggactacagatctgaaatgttttttggcac
gi|18 : AATGGAA--CA------ACCTTAGCAAGATGTT-GC-GAG-AAATT-TTA----A--TTGT-----TTTTT--TTTTAGCTGAAA----------CTG--A------------ATAAAA----TTA-TGA-ATGAAA-T----GAT---------A---------------AATA----TTT-TAGA----------------------------------TC-T----TCTGTAACTT----ACTATAAGAACTG-AATTCGGACTATG-T---AAATT--TGGA
gi|5 : TCAT--T----ACTGAAA----------CTA--T------------ATAAAA----TTA-TG--ATGAAA-T----GAT-------------------------AAAA----ATG-TAGAAAATGAAACatgtttttagtccga
gi|20 : tctatgaaaaatagatattagtctgagacccagtctatgacatttttaactggactacaaaaaatttctaaatgtatagtccgactatatttatgactttatatcgaaatggaacaatctgagcaagatgttgggagtaatttatgtagtttccttgctgaaactaaggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaaTT--A--GTAAGTTTTA-----GGTC-T----TCTGTTATTTATGGACTATAAGAATTG-AATTCAAAC--TGTT---ACTTT--CGGA-ATGTCTCGTGTCC
Alignments
lowQualScore : 1 111111111111 222222222222222222222222 11111 1 8888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 2 2 0 222 2 1 4 22 333 3 2 555555 1 8 9999 666 22 77777 22 4444 8888888888 2 000000000000 4444 2 999999999 666666666666666666666666 6666666 4444 2 0 22 00000 2 55555 4444 2 2 666666 33 2 1 444 33 33 3 7 5 3333333333333333333333333333333333333333333333333333333333333333333333 4 4 4 2
lowQualScore : . . . ... . . . .. ... . . ...... . . .... ... .. ..... .. .... .......... . ............ .... . ......... ........................ ....... .... . . .. ..... . ..... .... . . ...... .. . . ... .. .. . . . ...................................................................... . . . .
lowQualScore : 0 0 4 666 2 7 8 55 333 4 0 888888 1 0 1111 222 88 00000 66 0000 8888888888 0 222222222222 5555 1 555555555 666666666666666666666666 8888888 7777 2 3 99 88888 2 66666 7777 2 2 444444 44 5 1 444 77 77 5 6 7 2222222222222222222222222222222222222222222222222222222222222222222222 0 0 4 8
consensus : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-G-TTTTCCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CA------ATCTGAGCAAGATGTTGGGAG-AA--T-TTAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA--ACTT-AA-TGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGG-AATGTCT-------------CT---A----GTC---------------C---------------------T------GAAAA-G-T-TTTTGGCAC
Reference ( family-1124 ) : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-G-TTTTCCAAACGTANAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CA------ATCTGAGCAAGATGTTGGGAG-AA--T-TTAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA--ACTT-NA-TGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGAAATGTCT-------------CT---T----GTC---------------C---------------------T------GAAAA-G-T-TTTTGGCGC
gi|1 : AAAAATAGAT-TT-AGTCCGAGACCCTGTCTTTGACATGTTTAACTGGGTAACAGAA-G-TTTTCCAAACGTATAGCATGACTGTTTCTATGACT--TTA---TATCGAAATCGAA-CA------ATGTGAGCAAGATGTTGGGAGAAA--T-TTAC---G--TAGT-----CAGA--CT----ACTGAAA----------T-CAAGGACCTATATTTATAGAAGTCCTTGCTGAAACC----AAA--TAATATTACGAT---------GAAATGATAAAA----ATT-TAGAAAATGAA--ACTT-GA-TGTAAATTTTA-----GGGCT----T-TTTTTCA------TTTACAGACTTTAAG--AATTG-AATTCAGA---CTT--TGTA--ATTTAAGAAG-ATCT-------------TT---T----GTC---------------CAAAGGGCTATAATTATAGTCGT------GAAAA-G-T-TCTTGGCA
gi|10 : aCGAAAAATAAAT-AT-AGTCTGCGACCCAGTCTATGACATTTTTAACCAGACTACAAAT-G-TTTTCCAAATGCACAGCCTGACTATTTCTATGAC---------TATCAAAATAGAA-CA------ATCTGAGCAAGTTTCTGAGAGAAA--T-TTTC---G--TAGA-----TTCT--TT----GTTGAAA----------C-TAA------------ATTAAA----TAA-CA--ATT----AAA--G--------GAT----------AAA-------A----ATT-TAGAAAATGAA--ACTG-AA-TGTAAATTTTA-----GA-------T-CAGTT-A------TTTACGGATTATAAG--AATTG-AAACCAGA---CTA--TGTA--ATTT--GGATTGTTT-------------Caga
gi|11 : ctaGCGAAAAATATAT-AA-AGTCAGAGACCCGCACTATATCATTTTTGATCAGACTA--------TTTTCTAAACCTACAGTGTGATCA-------GACTATTTA---TATC-AAATGAAG-C--------------CAA-AT-TCAGGAA-AG--G-TT--------TGGT-----CTCT------------AAA----------TATAA------------ACAAGA----TTA-GA--ATTTTTCACATTT--------GAT---------GTAA-------A----AT--------ATGTA--AC------CGTTA--TTTA-----GTTCT----TCCCGTT--------TTTACGAAT--CAAGCAAAATC-AATTGAGG---TCA--TATA--TCTTTGTTAA-GTTT-------------ATAGGTCAAAGTC---------------C---------------------T------GAAAA-G-T-TTT
gi|12 : agtctAAACTGAT-AT-AGT--GAGACCCAATCTATAACATT-------------CATAT-G-ATTTTCAAACATAAAGTC-AACTATTTCTATGACT--TGA---TATGGAAATGGAA-CA------A------------GCTGGGAG-AAA-T-TTAC---G--T---------TGT--TC----GCAGAAA----------C-TGA------------ATAAAA----TTA-AA--ATT----GAA--TAT------GAT---------AAAG-------C-----TT-AAGAAAATGAA--ATTT-AA-TGTACAATTTA-----AGTCT----T-CTGTT-A------CTTACAGACCATAAT--AATT--AATTCGGA---CGT--TGTA--ATTTTGG-AATGTCT-------------C----A----GAC---------------C---------------------T------GAAAA-G-A-TTTTa
gi|13 : T-AA-AGTCCTTAAGCCATTCT--GACATTTT-AACGGAACTACAAAA-G-TTTCCCAAATGGTTAACCCGACTATTTCTTTGACT--TAA---TATCATAATGGAA-GA------ATCTGAGCAAGATGTT----G-AA--TATCACCCTG--TGATA----TTCTTCTT----GCTGAAA----------C-TGA------------AAAAAA----TTA-TG--ATT----AAA--T--------AAT----------AAA-------A----CTT-CAGAAAATGAA--ACGT-AA-TGTAAATTTTA-----GGTCTTCAGT-CTGTT-T------TTTATGGACTACAAG--CATTG-AATTCGGA---C
gi|14 : tgAATAAATTAT-AGTCTGATACCAAATCTGTGACATTTTTAAATGCACTACAAAA-G-TTTTCCAAAGGTATAGCTGGACTATTTCTA--ACT--TCA---TACCGAAATGGAA-CA------GTCTAAGCATAATGTTGGGAGAAA--T-TTAA---G--TAGT-----TTCT--TT----ACTGAAACCAAGGACCTC-TGC------------ATAAGT----CTT-TG--CTA----AAAC-T--------G-----------AATA-------ATTTTATT-TAGAAAATAAA--ACTT-AA-TTTAAATTTTA-----GGACT-------TGTT-A------TTTAC-GACT
gi|15 : atatAAAATAGAT-AT-AGTCCAAGACCCAGTCTATGACATTTTCAACCAGACTACAAAT-A-TTTTCCAAAC-TATAACACCATTATTTCCATGACT--TTA---TATCAAAATGGAA-CA------ATCTGAGCAAGAAGTTGGGAG-AA--A-TT-C---GACTAGT-----TTAT--TT----GCTGAAA----------C-TCA------------ATAAAA----TTA-TG--GTT----AAA--T--------GAT-----------AA-------A----ATTGCAGAAAATGAA--ACTTAAA-TGTTAATTTTA-----TGTCT----T-CTGTT-A------TATACAAACTATgg
gi|16 : TTTCCATAACT--ATT---TAGTAAAATAGAA-AA------ATCTGAGC----TGATGGGAG-AAA-T-TTAA---C--TAGT-----TTCT--TT----GCTGAAA----------C-TGA-------------------------------------AAA--C----------------------AA-------A----ATT-------ACCCA--A--T-AA-TGTAAATTTTA-----TATCC----T-CTGTT-A------TTTACGGACTATAAC--AATTT-AATTTGGA---C----TGTA--TTTTTGGAAA-GTCT-------------CT---A----GTC---------------C---------------------
gi|17 : tatttcatatacaatatgaaacctccttaagtcGCAAAAAATAGAT-------CCAAGACCCAGTCTATGACATTTTAATCTGGTCTACAAAA-C-TTTTCCAAACGTATAGCAAGACTATTTCTACGACT--TCA---TATTGAAATGGAA-CA------A---------GATG----AAGCAA--T-CTAC---A--TAGC-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----T------------------------------------------AA-------A----ACT-TAG------------------TGTAATTTTTA-----GG-------T-CCATT-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--TGTG--ATTTTGG-AATGTCT-------------CT---A----GTaaacgacttcaatccagtcagaagagattttcac
gi|18 : tctAATGGAA-CA------ACCTTAGCAAGATGTTGCGAG-AAATT-TTA----A--TTGT-----TTTT--TTTTTAGCTGAAA----------C-TGA------------ATAAAA----TTA-TGA-ATG----AAA--T--------GAT---------AAAT-------A----TTT-TAGA-----------------------------------TCT----T-CTGTA-A------CTT----ACTATAAG--AACTG-AATTCGGA---CTA--TGTA--AATTTGG-AATGTTT-------------TT---A----GTC---------------C---------------------
gi|19 : GACTATAAAA-G-TTTTTTAAATGTATAGCCTGACTATTTCTATGAC----TA---TATCTAAATGGAA-CA------ACCTGAGCAAGATTTT-------A--T-GTACCA-G--TAGT-----TTCT--TT----GCTGAAga
gi|2 : taattatgataataatcttaaacaaaaatgatgtaaaGCGAAAAATAGGT-AT-AATCTGAGAACGAGTCTATGACACTTTTAACTGTACTACGAAA-GTTTTTCCAAATGTACAGCCTGACTATTTC--TGACT--TTA---TATTGAAATGAAAGCAAACTATATATGAGCAGGATATTGTGAGAAA--T-AGAT---G--AAGT-----TTCT--TT----ACTAAAA----------C-TAA------------AGAAAA----TTA-TC--ATG----AAA--T--------GAT---------AAAC-------A----G-T-TAG-AAACGAA--AATT-AA-TGTAAATTTTACTTAGGGTCA----C-CTGTC-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--CGTA--ATATTGGAAA-GTCT-------------CT---A----GTC---------------CAAAG-----------------TACAAAGGAAAATG-T-TTTTGGCA
gi|20 : tTT-TA--GTAAGTTTTA-----GGTCT----T-CTGTT-A------TTTATGGACTATAAG--AATTG-AATTCAAA---CTG--T-TA--CTTTCGG-AATGTCT-------------CG---T----GTC---------------CAAAGGACTTTAGTCG------T------GAAAA-G-T-TTTTGACtg
gi|21 : aGCGAAAAATAGAT-AT-AGTCAGAGATCAAGTCTACGACATTTA-AACTGGACTACAATA-T-TTTTTCAAACGTATAGCCCGACTATTACTATGACT--TTA---TATCt
gi|22 : ctGCTAAAAATAGTT-AC-AGTCTGAGACCCAGTCTGTGACATTTTTAACCACACTACAAAA-G-TTTTCCAAACGTAAAGCCCAAATATTTCTGTGACT--TTA---TATCc
gi|23 : tAGAT-GT-AGTCCAAGATCCAGTCGATGGCATGTTTAACAGGACTAC-AAA-G-TTTTCCACATGTATAGTTGGCCTATTT-TATGACT--
gi|24 : tctgaaaaaaacaaccc--TTA---TATCAAAATTGAA-TG------ATCTGAG----------GAAG-AA------AC---G--TCAT-----GTCT--TT----GCCGACA----------C-TGA------------ACATAA----TTG-CA--ATA----AAA--T--------GAT---------AAAA-------
gi|25 : GCGAAAAACATAT-AT-AGCCCAAGACCAAGGCTATAACATTTTTGATCGGACctttaacaagga
gi|3 : cagtctGCGATAAATAGAC-CT-AGTCCGAGACTCAGTCTATTACATTTTTAATCGGACTACAAAA-A-TATTCCATATGTAAAGTCAGACTATTTCTATGAC----TA---TATCTCAATGGAA-CA------AACTGAGCAAGATGTTGGGAGAAA--T-TTAC---A--TAAT-----TTCT--TC----GCTGAAA----------C-TGA------------ATAAAT----CAA-TG--ACT----AAA--T--------GAT---------AAAA-------C----ATT-TAGAAAATGAT--AC------TATAAATTTTA-----CGTCT----T-CTCTT-A------TTTTCGGACTATAAG--AATTG-AATTTAGA---CTG--T-TA--ATTT--GGAATGTCTAAAGTTCAAAGAACTA--TA---GTC---------------C---------------------T------GAGAA-G-T-TTTTaaatgattgaactatttatatcacaagagaccaaa
gi|4 : GCGAAAATTAGAT-AT-AGTCCGAAACCTAGCCTCTGACATTTTTAACCGGAATATGAAA-G-TTTTCCAAATGTAAAGCCTGGCTATTTCTATGACT--TTA---TATTGAAATTGAA-CA------ATCTGAGCAAGATGTTTGGAG-AA--T-TTAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATC----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAA-GAA--ACCT-TA-TGTAAATTTTA-----GGTCT----T-CTGTC-A------TTTACAGACTATAAG--AAATG-AGTTGGGA---CAA--TGCA--GTTTTGGACAT-TCT-------------CT---T----TTC---------------C---------------------T------GAAA----TATTTTGGCAtacac
gi|5 : GAAAAATAGAT-ATTAGTCTGAGACCCAGTCTATGACATTTTTAACTGGACTACAAAA-A-ATTTCTAAATGTATAGTCCGACTATATTTATGACT--TTA---TATCGAAATGGAA-CA------ATCTGAGCAAGATGTTGGGAGTAA--T-TTAT---G--TAGT-----TTCC--TT----GCTGAAA----------C-TAA------------ag
gi|5 : tctatTCA--TT----ACTGAAA----------C-TAT------------ATAAAA----TTA-TG--ATG----AAA--T--------GAT----------AAA-------A----ATG-TAGAAAATGAA--ACggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaatcattactgaaactatataaaattatgatgaaatgataaaaatgtagaaaatgaaac
gi|6 : tctatgaaaaatagatattagtctgagacccagtctatgacatttttaactggactacaaaaaatttctaaatgtatagtccgactatatttatgactttatatcgaaatggaacaatctgagcaagatgttgggagtaatttatgtagtttccttgctgaaactaaggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaaGCGAAAAGTAGAT-CT-AGTCCGAGACTCAGTTTATGACATTCTTAACCAGACT-TAAAATG-TTTTCCAAACATTTGACCCGACTATTTCTATGACT--TCA---TATGGAAATGGAA-CC------ATTCTAGCGAGATGTTGCGAATGA--T-TTCC---G--TATT-----TTCT--TT----GCTGAAA----------C-TAA------------ATTAAA----TAA-TA----T----AAA--T--------GA---------------------------------AAAGTAAA--ACTT------------TTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AACTCTGA---CTA--TGTA--ATTTTGG-AATGTTT-------------
gi|7 : tCGAAAAATAGGT-AT-AGTCCATGACCCAGCCCATGAAATCTTTAACCTGACTACAAAA-T-TTTTCCAAATGT-------------TTCTCTGACT--TTC---TATTGAAATGGAA-CA------ATCTTAGCAAGATGTTGGGAGAAA--T-TGAC---A--TATTAAAACTTCA--TT----GTTGAAT----------T-TGA------------GTAAAA----TTA-TG--ATT----AAA--T--------G-T---------TAAA-------A----ATT-TAGAAAA-GTA--ACTT-TATTGTAAACTTTA-----GATCT----G-TTGTT-A------TTTACAGACTATAAG--AATTGTAATTTTGAAAGTTC--TCTA--GTTT---AAAGGACT-------------AT---A----GTC---------------C---------------------T------GAAAA-G-T-TTTTGGCGtaggccaaagtactatagtcctaaaaaaattatggcagaca
gi|8 : GCAAAAAATAAAT-AT-AGTCCAAGACCTAGTCTATGACATTTTTAACCCGACTACAACA-G-TTATCAAAA--TCAA---CAACTATTTCTATGACT--TTGTATTATCTAAATGGAA-----------CTTAGCAAGATATTGGGAA-AA----GAAC---G--TAGT-----TTCT--TT----GTTGAAA----------A-TGA------------ATAAAA----TTA-TG----T----AAA--TTTTA----GGTCTGGTATAAAAAA-------A----ATT-TACAAACTGAA--A
gi|8 : ctGAAAATGAATAAAAT-TA-TGTAAATTTTA-----GGTCT----G-GTATA-AAAAAAATTTACAAACTGAAAG--AATTG-AATTCAGA---CTAGTTGTGATATTTTAG-AATATCT-------------CT---A----TTC---------------C---------------------A------GAGGA-G-gaattgaattcagactagttgtgatattttagaatatctctattccagaggagcataaaaattggtactgggaatattttgtaa
gi|9 : ctgcaaaaaataaatatagtccaagacctagtctatgacatttttaacccgactacaacagttatcaaaatcaacaactatttctatgactttgtattatctaaatggaacttagcaagatattgggaaaagaacgtagtttctttgttAAAAACAGAT-TT-ATTCCAAGACACAGTCTACG-----------------ACA------TTTT---------TAACCAGACTTTATCTATGACT--TTA---TATT---ATGGAA-CA------ATATGAGCAAGATGTTGTGAG-AAA-T-TTAC---A--TAAT-----TTCT--TT----GCAGAAA----------A-AGA------------ATAAAA----TTA-TG--ATT----AAA--C--------AAT----------AAA-------A----CTT-TA-AAAATGAA--AATT-AA-TGTAAATTTTA-----GGTCT----T-CTGTT-A------T----GGACTATAAC--AATTG-AATTGGGA---CTA--TGTC--ATTTTGG-AATATCT-------------CA---A----GTCTAAAGGACTACAGATC---------------------T------GAAAT-GTT-TTTTGGCAcataaaaattggtactgggaatattttgtaa
Alignments
lowQualScore : 1 1111 111111111111 222222222222222222222222 555555555555555555555555555555555555555555555555555555 222222222222222222222222222
lowQualScore : 2 2 0 2 2 0 2 4 22 333 3 2 6666666 6 0000 2 666 22 77777 22 4444 8888888888 2 000000000000 4444 2 999999999 444444444444444444444444 9999999999999 44 0 333 777 555 55555 4444 2 2 666666 33 2 1 444 33 33 0 2 8888888 333333333333333333333333333333333333333333333333333333 333333333333333333333333333 3 3 4
lowQualScore : . . . . . . . . .. ... . . ....... . .... . ... .. ..... .. .... .......... . ............ .... . ......... ........................ ............. .. . ... ... ... ..... .... . . ...... .. . . ... .. .. . . ....... ...................................................... ........................... . . .
lowQualScore : 0 0 4 0 0 5 1 8 55 333 4 0 9999999 0 5555 0 222 88 00000 66 0000 8888888888 0 222222222222 5555 1 555555555 111111111111111111111111 3333333333333 44 3 777 333 444 66666 7777 2 2 444444 44 5 1 444 77 77 3 7 7777777 999999999999999999999999999999999999999999999999999999 444444444444444444444444444 6 6 0
consensus : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
Reference ( family-1124 ) : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
gi|1 : AAAAATAGAT-TT-AGTCCGAGACCCTGTCTTTGACATGTTTAACTGGGTAACAGAA-GTTTT-CCAAACGTATAGCATGACTGTTTCTATGACT--TTA---TATCGAAATCGAA-CAA------TGTGAGCAAGATGTTGGGAGAAA--T-T-TAC---G--TAGT-----CAGA--CT----ACTGAAA----------T-CAAGGACCTATATTTATAGAAGTCCTTGCTGAAACC----AAA--TAATATTACGAT---------GAAATGATAAAA----ATT-TAGAAAATGAA---AC--TT-GATGTAAATTTTA-----GGGCT----T-TTTTTCA------TTTACAGACTTTAAG--AATTG-AATTCAGA---CTT--TGTA--ATTTAAGA-AGATCTTTTGT--------------CCAAAGGGCTATAATTA---------------T-------AGTC---------------G----T------GAAAA-G-T-TCTTGGCAC
gi|10 : aCGAAAAATAAAT-AT-AGTCTGCGACCCAGTCTATGACATTTTTAACCAGACTACAAAT-GTTTT-CCAAATGCACAGCCTGACTATTTCTATGAC---------TATCAAAATAGAA-CAA------TCTGAGCAAGTTTCTGAGAGAAA--T-T-TTC---G--TAGA-----TTCT--TT----GTTGAAA----------C-TAA------------ATTAAA----TAA-CA--ATT----AAA--G--------GAT----------AAA-------A----ATT-TAGAAAATGAA---AC--TG-AATGTAAATTTTA-----GA-------T-CAGTT-A------TTTACGGATTATAAG--AATTG-AAACCAGA---CTA--TGTA--A-TTTGGA-T-------TGT--------------T--------------TC---------------aga
gi|11 : ctaGCGAAAAATATAT-AA-AGTCAGAGACCCGCACTATATCATTTTTGATCAGACTA-------TTTT-CTAAACCTACAGTGTGATCA-------GACTATTTA---TATC-AAATGAAG-C--------------CAA-AT-TCAGGAA-AG--G-T-T--------TGGT-----CTCT------------AAA----------TATAA------------ACAAGA----TTA-GA--ATTTTTCACATTT--------GAT---------GTAA-------A----AT--------ATGTA---ACCGTT-A--------TTTA-----GTTCT----TCCCGTT--------TTTACGAAT--CAAGCAAAATC-AATTGAGG---TCA--TATA--TCTTTGTT-A-------AGT--------------T--------------TA---------------TAGGTCAAAGTC---------------C----T------GAAAA-G-T-TTT
gi|12 : agtctAAACTGAT-AT-AGT--GAGACCCAATCTATAACATT-------------CATAT-GATTT-TCAAACATAAAGTC-AACTATTTCTATGACT--TGA---TATGGAAATGGAA-CAA------------------GCTGGGAG-AAA-T-T-TAC---G--T---------TGT--TC----GCAGAAA----------C-TGA------------ATAAAA----TTA-AA--ATT----GAA--TAT------GAT---------AAAG-------C-----TT-AAGAAAATGAA---AT--TT-AATGTACAATTTA-----AGTCT----T-CTGTT-A------CTTACAGACCATAAT--AATT--AATTCGGA---CGT--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC-----------------------AGAC---------------C----T------GAAAA-G-A-TTTTa
gi|13 : T-AA-AGTCCTTAAGCCATTCT--GACATTTT-AACGGAACTACAAAA-GTTTC-CCAAATGGTTAACCCGACTATTTCTTTGACT--TAA---TATCATAATGGAA-GAA------TCTGAGCAAGATGTT----G-AA--TAT-CACCCTG--TGATA----TTCTTCTT----GCTGAAA----------C-TGA------------AAAAAA----TTA-TG--ATT----AAA--T--------AAT----------AAA-------A----CTT-CAGAAAATGAA---AC--GT-AATGTAAATTTTA-----GGTCTTCAGT-CTGTT-T------TTTATGGACTACAAG--CATTG-AATTCGGA---C
gi|14 : tgAATAAATTAT-AGTCTGATACCAAATCTGTGACATTTTTAAATGCACTACAAAA-GTTTT-CCAAAGGTATAGCTGGACTATTTCTA--ACT--TCA---TACCGAAATGGAA-CAG------TCTAAGCATAATGTTGGGAGAAA--T-T-TAA---G--TAGT-----TTCT--TT----ACTGAAACCAAGGACCTC-TGC------------ATAAGT----CTT-TG--CTA----AAAC-T--------G-----------AATA-------ATTTTATT-TAGAAAATAAA---AC--TT-AATTTAAATTTTA-----GGACT-------TGTT-A------TTTAC-GACT
gi|15 : atatAAAATAGAT-AT-AGTCCAAGACCCAGTCTATGACATTTTCAACCAGACTACAAAT-ATTTT-CCAAAC-TATAACACCATTATTTCCATGACT--TTA---TATCAAAATGGAA-CAA------TCTGAGCAAGAAGTTGGGAG-AA--A-T-T-C---GACTAGT-----TTAT--TT----GCTGAAA----------C-TCA------------ATAAAA----TTA-TG--GTT----AAA--T--------GAT-----------AA-------A----ATTGCAGAAAATGAA---AC--TTAAATGTTAATTTTA-----TGTCT----T-CTGTT-A------TATACAAACTATgg
gi|16 : TTTCCATAACT--ATT---TAGTAAAATAGAA-AAA------TCTGAGC----TGATGGGAG-AAA-T-T-TAA---C--TAGT-----TTCT--TT----GCTGAAA----------C-TGA-------------------------------------AAA--C----------------------AA-------A----ATT-------ACCCA---A----T-AATGTAAATTTTA-----TATCC----T-CTGTT-A------TTTACGGACTATAAC--AATTT-AATTTGGA---C----TGTA--TTTTTGGA-A-------AGT--------------C--------------TC---------------T-------AGTC---------------C----
gi|17 : tatttcatatacaatatgaaacctccttaagtcGCAAAAAATAGAT-------CCAAGACCCAGTCTATGACATTTTAATCTGGTCTACAAAA-CTTTT-CCAAACGTATAGCAAGACTATTTCTACGACT--TCA---TATTGAAATGGAA-CAA---------------GATG----AAGCAA--T-C-TAC---A--TAGC-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----T------------------------------------------AA-------A----ACT-TAG--------------------TGTAATTTTTA-----GG-------T-CCATT-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--TGTG--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTaaacgacttcaatccagtcagaagagattttcac
gi|18 : tctAATGGAA-CAA------CCTTAGCAAGATGTTGCGAG-AAATT-T-TA----A--TTGT-----TTTT--TTTTTAGCTGAAA----------C-TGA------------ATAAAA----TTA-TGA-ATG----AAA--T--------GAT---------AAAT-------A----TTT-TAGA-------------------------------------TCT----T-CTGTA-A------CTT----ACTATAAG--AACTG-AATTCGGA---CTA--TGTA--AATTTGGA-A-------TGT--------------T--------------TT---------------T-------AGTC---------------C----
gi|19 : GACTATAAAA-GTTTT-TTAAATGTATAGCCTGACTATTTCTATGAC----TA---TATCTAAATGGAA-CAA------CCTGAGCAAGATTTT-------A--T-G-TACCA-G--TAGT-----TTCT--TT----GCTGAAga
gi|2 : taattatgataataatcttaaacaaaaatgatgtaaaGCGAAAAATAGGT-AT-AATCTGAGAACGAGTCTATGACACTTTTAACTGTACTACGAAA-GTTTTTCCAAATGTACAGCCTGACTATTTCT--GACT--TTA---TATTGAAATGAAAGCAAACTATATATGAGCAGGATATTGTGAG-AA--A-TAGAT---G--AAGT-----TTCT--TT----ACTAAAA----------C-TAA------------AGAAAA----TTA-TC--ATG----AAA--T--------GAT---------AAAC-------A----GTT--AGAAA-CGAA---AA--TT-AATGTAAATTTTACTTAGGGTCA----C-CTGTC-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--CGTA--ATATTGGA-A-------AGT--------------C--------------TC---------------T-------AGTC---------------CAAAGTACAAAGGAAAATG-T-TTTTGGCAC
gi|20 : tGTAAGTTTTA-----GGTCT----T-CTGTT-A------TTTATGGACTATAAG--AATTG-AATTCAAA---CTG--T-TA--CTTTCGGA-A-------TGT--------------C--------------TCGTGTCCAAAGGACTTT-------AGTC---------------G----T------GAAAA-G-T-TTTTGACtg
gi|21 : atttaGCGAAAAATAGAT-AT-AGTCAGAGATCAAGTCTACGACATTTA-AACTGGACTACAATA-TTTTT-TCAAACGTATAGCCCGACTATTACTATGACT--TTA---TATCt
gi|22 : ctGCTAAAAATAGTT-AC-AGTCTGAGACCCAGTCTGTGACATTTTTAACCACACTACAAAA-GTTTT-CCAAACGTAAAGCCCAAATATTTCTGTGACT--TTA---TATCc
gi|23 : tAGAT-GT-AGTCCAAGATCCAGTCGATGGCATGTTTAACAGGACTAC-AAA-GTTTT-CCACATGTATAGTTGGCCTATTT-TATGACT--
gi|24 : tctgaaaaaaacaaccc--TTA---TATCAAAATTGAA-TGA------TCTGAG----------GAAG-AA-------AC---G--TCAT-----GTCT--TT----GCCGACA----------C-TGA------------ACATAA----TTG-CA--ATA----AAA--T--------GAT---------AAAA-------
gi|25 : GCGAAAAACATAT-AT-AGCCCAAGACCAAGGCTATAACATTTTTGATCGGACctttaacaagga
gi|3 : cagtctGCGATAAATAGAC-CT-AGTCCGAGACTCAGTCTATTACATTTTTAATCGGACTACAAAA-ATATT-CCATATGTAAAGTCAGACTATTTCTATGAC----TA---TATCTCAATGGAA-CAA------ACTGAGCAAGATGTTGGGAGAAA--T-T-TAC---A--TAAT-----TTCT--TC----GCTGAAA----------C-TGA------------ATAAAT----CAA-TG--ACT----AAA--T--------GAT---------AAAA-------C----ATT-TAGAAAATGA---------T-ACTATAAATTTTA-----CGTCT----T-CTCTT-A------TTTTCGGACTATAAG--AATTG-AATTTAGA---CTG--T-TA--A-TTTGGA-A-------TGT--------------CTAAAGT--------TCAAAGAACTA------T-------AGTC---------------C----T------GAGAA-G-T-TTTTTACACaaatgattgaactatttatatcacaagagaccaaa
gi|4 : GCGAAAATTAGAT-AT-AGTCCGAAACCTAGCCTCTGACATTTTTAACCGGAATATGAAA-GTTTT-CCAAATGTAAAGCCTGGCTATTTCTATGACT--TTA---TATTGAAATTGAA-CAA------TCTGAGCAAGATGTTTGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATC----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAA-GAA---AC--CT-TATGTAAATTTTA-----GGTCT----T-CTGTC-A------TTTACAGACTATAAG--AAATG-AGTTGGGA---CAA--TGCA--GTTTTGGACA-------T-T--------------C--------------TC---------------T-------TTTC---------------C----T------GAAA----TATTTTGGCAC
gi|5 : GAAAAATAGAT-ATTAGTCTGAGACCCAGTCTATGACATTTTTAACTGGACTACAAAA-AATTT-CTAAATGTATAGTCCGACTATATTTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAGTAA--T-T-TAT---G--TAGT-----TTCC--TT----GCTGAAA----------C-TAA------------ag
gi|5 : tctatTCA--TT----ACTGAAA----------C-TAT------------ATAAAA----TTA-TG--ATG----AAA--T--------GAT----------AAA-------A----ATG-TAGAAAATGAA---AC--ggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaatcattactgaaactatataaaattatgatgaaatgataaaaatgtagaaaatgaaac
gi|6 : tctatgaaaaatagatattagtctgagacccagtctatgacatttttaactggactacaaaaaatttctaaatgtatagtccgactatatttatgactttatatcgaaatggaacaatctgagcaagatgttgggagtaatttatgtagtttccttgctgaaactaaggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaaGCGAAAAGTAGAT-CT-AGTCCGAGACTCAGTTTATGACATTCTTAACCAGACT-TAAAATGTTTT-CCAAACATTTGACCCGACTATTTCTATGACT--TCA---TATGGAAATGGAA-CCA------TTCTAGCGAGATGTTGCGAATGA--T-T-TCC---G--TATT-----TTCT--TT----GCTGAAA----------C-TAA------------ATTAAA----TAA-TA----T----AAA--T--------GA---------------------------------AAAGTAAA---AC--TT-----------TTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AACTCTGA---CTA--TGTA--ATTTTGGA-A-------TGTTTTAGGCCAAAGTAC--------------TA---------------T-------AGTC---------------C----T------AAAAA-A-A-TTATGGCA
gi|7 : tCGAAAAATAGGT-AT-AGTCCATGACCCAGCCCATGAAATCTTTAACCTGACTACAAAA-TTTTT-CCAAATG-------------TTTCTCTGACT--TTC---TATTGAAATGGAA-CAA------TCTTAGCAAGATGTTGGGAGAAA--T-T-GAC---A--TATTAAAACTTCA--TT----GTTGAAT----------T-TGA------------GTAAAA----TTA-TG--ATT----AAA--T--------G-T---------TAAA-------A----ATT-TAGAAAA-GTA---ACT-TT-ATTGTAAACTTTA-----GATCT----G-TTGTT-A------TTTACAGACTATAAG--AATTGTAATTTTGAAAGTTC--TCTA--GTTT--AA-A-------GGA--------------C--------------TA---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCGCgaca
gi|8 : GCAAAAAATAAAT-AT-AGTCCAAGACCTAGTCTATGACATTTTTAACCCGACTACAACA-GTTAT-CAAAATCAA-----CAACTATTTCTATGACT--TTGTATTATCTAAATGGAA-----------CTTAGCAAGATATTGGGAA-AA----G-AAC---G--TAGT-----TTCT--TT----GTTGAAA----------A-TGA------------ATAAAA----TTA-TG----T----AAA--TTTTA----GGTCTGGTATAAAAAA-------A----ATT-TACAAACTGAA---A
gi|8 : ctGAAAATGAATAAAA--TT-A-TGTAAATTTTA-----GGTCT----G-GTATA-AAAAAAATTTACAAACTGAAAG--AATTG-AATTCAGA---CTAGTTGTGATATTTTAGA-A-------TAT--------------C--------------TC---------------T-------ATTC---------------C----A------GAGGA-G-gaattgaattcagactagttgtgatattttagaatatctctattccagaggagcataaaaattggtactgggaatattttgtaa
gi|9 : ctgcaaaaaataaatatagtccaagacctagtctatgacatttttaacccgactacaacagttatcaaaatcaacaactatttctatgactttgtattatctaaatggaacttagcaagatattgggaaaagaacgtagtttctttgttAAAAACAGAT-TT-ATTCCAAGACACAGTCTACG-----------------ACA-----TTTT----------TAACCAGACTTTATCTATGACT--TTA---TATT---ATGGAA-CAA------TATGAGCAAGATGTTGTGAG-AAA-T-T-TAC---A--TAAT-----TTCT--TT----GCAGAAA----------A-AGA------------ATAAAA----TTA-TG--ATT----AAA--C--------AAT---------AAAA-------C-----TT-TA-AAAATGAA---AA--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------T----GGACTATAAC--AATTG-AATTGGGA---CTA--TGTC--ATTTTGGA-A-------TAT--------------C--------------TC---------------A-------AGTCTAAAGGACTACAGATC----T------GAAAT-GTT-TTTTGGCACcataaaaattggtactgggaatattttgtaa
Alignments
lowQualScore : 1 1111 111111111111 222222222222222222222222 555555555555555555555555555555555555555555555555555555 222222222222222222222222222
lowQualScore : 2 2 0 2 2 0 2 4 22 333 3 2 6666666 6 0000 2 666 22 77777 22 4444 8888888888 2 000000000000 4444 2 999999999 444444444444444444444444 9999999999999 44 0 333 777 555 55555 4444 2 2 666666 33 2 1 444 33 33 0 2 8888888 333333333333333333333333333333333333333333333333333333 333333333333333333333333333 3 3 4
lowQualScore : . . . . . . . . .. ... . . ....... . .... . ... .. ..... .. .... .......... . ............ .... . ......... ........................ ............. .. . ... ... ... ..... .... . . ...... .. . . ... .. .. . . ....... ...................................................... ........................... . . .
lowQualScore : 0 0 4 0 0 5 1 8 55 333 4 0 9999999 0 5555 0 222 88 00000 66 0000 8888888888 0 222222222222 5555 1 555555555 111111111111111111111111 3333333333333 44 3 777 333 444 66666 7777 2 2 444444 44 5 1 444 77 77 3 7 7777777 999999999999999999999999999999999999999999999999999999 444444444444444444444444444 6 6 0
consensus : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
Reference ( family-1124 ) : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
gi|1 : AAAAATAGAT-TT-AGTCCGAGACCCTGTCTTTGACATGTTTAACTGGGTAACAGAA-GTTTT-CCAAACGTATAGCATGACTGTTTCTATGACT--TTA---TATCGAAATCGAA-CAA------TGTGAGCAAGATGTTGGGAGAAA--T-T-TAC---G--TAGT-----CAGA--CT----ACTGAAA----------T-CAAGGACCTATATTTATAGAAGTCCTTGCTGAAACC----AAA--TAATATTACGAT---------GAAATGATAAAA----ATT-TAGAAAATGAA---AC--TT-GATGTAAATTTTA-----GGGCT----T-TTTTTCA------TTTACAGACTTTAAG--AATTG-AATTCAGA---CTT--TGTA--ATTTAAGA-AGATCTTTTGT--------------CCAAAGGGCTATAATTA---------------T-------AGTC---------------G----T------GAAAA-G-T-TCTTGGCAC
gi|10 : aCGAAAAATAAAT-AT-AGTCTGCGACCCAGTCTATGACATTTTTAACCAGACTACAAAT-GTTTT-CCAAATGCACAGCCTGACTATTTCTATGAC---------TATCAAAATAGAA-CAA------TCTGAGCAAGTTTCTGAGAGAAA--T-T-TTC---G--TAGA-----TTCT--TT----GTTGAAA----------C-TAA------------ATTAAA----TAA-CA--ATT----AAA--G--------GAT----------AAA-------A----ATT-TAGAAAATGAA---AC--TG-AATGTAAATTTTA-----GA-------T-CAGTT-A------TTTACGGATTATAAG--AATTG-AAACCAGA---CTA--TGTA--A-TTTGGA-T-------TGT--------------T--------------TC---------------aga
gi|11 : ctaGCGAAAAATATAT-AA-AGTCAGAGACCCGCACTATATCATTTTTGATCAGACTA-------TTTT-CTAAACCTACAGTGTGATCA-------GACTATTTA---TATC-AAATGAAG-C--------------CAA-AT-TCAGGAA-AG--G-T-T--------TGGT-----CTCT------------AAA----------TATAA------------ACAAGA----TTA-GA--ATTTTTCACATTT--------GAT---------GTAA-------A----AT--------ATGTA---ACCGTT-A--------TTTA-----GTTCT----TCCCGTT--------TTTACGAAT--CAAGCAAAATC-AATTGAGG---TCA--TATA--TCTTTGTT-A-------AGT--------------T--------------TA---------------TAGGTCAAAGTC---------------C----T------GAAAA-G-T-TTT
gi|12 : agtctAAACTGAT-AT-AGT--GAGACCCAATCTATAACATT-------------CATAT-GATTT-TCAAACATAAAGTC-AACTATTTCTATGACT--TGA---TATGGAAATGGAA-CAA------------------GCTGGGAG-AAA-T-T-TAC---G--T---------TGT--TC----GCAGAAA----------C-TGA------------ATAAAA----TTA-AA--ATT----GAA--TAT------GAT---------AAAG-------C-----TT-AAGAAAATGAA---AT--TT-AATGTACAATTTA-----AGTCT----T-CTGTT-A------CTTACAGACCATAAT--AATT--AATTCGGA---CGT--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC-----------------------AGAC---------------C----T------GAAAA-G-A-TTTTa
gi|13 : T-AA-AGTCCTTAAGCCATTCT--GACATTTT-AACGGAACTACAAAA-GTTTC-CCAAATGGTTAACCCGACTATTTCTTTGACT--TAA---TATCATAATGGAA-GAA------TCTGAGCAAGATGTT----G-AA--TAT-CACCCTG--TGATA----TTCTTCTT----GCTGAAA----------C-TGA------------AAAAAA----TTA-TG--ATT----AAA--T--------AAT----------AAA-------A----CTT-CAGAAAATGAA---AC--GT-AATGTAAATTTTA-----GGTCTTCAGT-CTGTT-T------TTTATGGACTACAAG--CATTG-AATTCGGA---C
gi|14 : tgAATAAATTAT-AGTCTGATACCAAATCTGTGACATTTTTAAATGCACTACAAAA-GTTTT-CCAAAGGTATAGCTGGACTATTTCTA--ACT--TCA---TACCGAAATGGAA-CAG------TCTAAGCATAATGTTGGGAGAAA--T-T-TAA---G--TAGT-----TTCT--TT----ACTGAAACCAAGGACCTC-TGC------------ATAAGT----CTT-TG--CTA----AAAC-T--------G-----------AATA-------ATTTTATT-TAGAAAATAAA---AC--TT-AATTTAAATTTTA-----GGACT-------TGTT-A------TTTAC-GACT
gi|15 : atatAAAATAGAT-AT-AGTCCAAGACCCAGTCTATGACATTTTCAACCAGACTACAAAT-ATTTT-CCAAAC-TATAACACCATTATTTCCATGACT--TTA---TATCAAAATGGAA-CAA------TCTGAGCAAGAAGTTGGGAG-AA--A-T-T-C---GACTAGT-----TTAT--TT----GCTGAAA----------C-TCA------------ATAAAA----TTA-TG--GTT----AAA--T--------GAT-----------AA-------A----ATTGCAGAAAATGAA---AC--TTAAATGTTAATTTTA-----TGTCT----T-CTGTT-A------TATACAAACTATgg
gi|16 : TTTCCATAACT--ATT---TAGTAAAATAGAA-AAA------TCTGAGC----TGATGGGAG-AAA-T-T-TAA---C--TAGT-----TTCT--TT----GCTGAAA----------C-TGA-------------------------------------AAA--C----------------------AA-------A----ATT-------ACCCA---A----T-AATGTAAATTTTA-----TATCC----T-CTGTT-A------TTTACGGACTATAAC--AATTT-AATTTGGA---C----TGTA--TTTTTGGA-A-------AGT--------------C--------------TC---------------T-------AGTC---------------C----
gi|17 : tatttcatatacaatatgaaacctccttaagtcGCAAAAAATAGAT-------CCAAGACCCAGTCTATGACATTTTAATCTGGTCTACAAAA-CTTTT-CCAAACGTATAGCAAGACTATTTCTACGACT--TCA---TATTGAAATGGAA-CAA---------------GATG----AAGCAA--T-C-TAC---A--TAGC-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----T------------------------------------------AA-------A----ACT-TAG--------------------TGTAATTTTTA-----GG-------T-CCATT-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--TGTG--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTaaacgacttcaatccagtcagaagagattttcac
gi|18 : tctAATGGAA-CAA------CCTTAGCAAGATGTTGCGAG-AAATT-T-TA----A--TTGT-----TTTT--TTTTTAGCTGAAA----------C-TGA------------ATAAAA----TTA-TGA-ATG----AAA--T--------GAT---------AAAT-------A----TTT-TAGA-------------------------------------TCT----T-CTGTA-A------CTT----ACTATAAG--AACTG-AATTCGGA---CTA--TGTA--AATTTGGA-A-------TGT--------------T--------------TT---------------T-------AGTC---------------C----
gi|19 : GACTATAAAA-GTTTT-TTAAATGTATAGCCTGACTATTTCTATGAC----TA---TATCTAAATGGAA-CAA------CCTGAGCAAGATTTT-------A--T-G-TACCA-G--TAGT-----TTCT--TT----GCTGAAga
gi|2 : taattatgataataatcttaaacaaaaatgatgtaaaGCGAAAAATAGGT-AT-AATCTGAGAACGAGTCTATGACACTTTTAACTGTACTACGAAA-GTTTTTCCAAATGTACAGCCTGACTATTTCT--GACT--TTA---TATTGAAATGAAAGCAAACTATATATGAGCAGGATATTGTGAG-AA--A-TAGAT---G--AAGT-----TTCT--TT----ACTAAAA----------C-TAA------------AGAAAA----TTA-TC--ATG----AAA--T--------GAT---------AAAC-------A----GTT--AGAAA-CGAA---AA--TT-AATGTAAATTTTACTTAGGGTCA----C-CTGTC-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--CGTA--ATATTGGA-A-------AGT--------------C--------------TC---------------T-------AGTC---------------CAAAGTACAAAGGAAAATG-T-TTTTGGCAC
gi|20 : tGTAAGTTTTA-----GGTCT----T-CTGTT-A------TTTATGGACTATAAG--AATTG-AATTCAAA---CTG--T-TA--CTTTCGGA-A-------TGT--------------C--------------TCGTGTCCAAAGGACTTT-------AGTC---------------G----T------GAAAA-G-T-TTTTGACtg
gi|21 : atttaGCGAAAAATAGAT-AT-AGTCAGAGATCAAGTCTACGACATTTA-AACTGGACTACAATA-TTTTT-TCAAACGTATAGCCCGACTATTACTATGACT--TTA---TATCt
gi|22 : ctGCTAAAAATAGTT-AC-AGTCTGAGACCCAGTCTGTGACATTTTTAACCACACTACAAAA-GTTTT-CCAAACGTAAAGCCCAAATATTTCTGTGACT--TTA---TATCc
gi|23 : tAGAT-GT-AGTCCAAGATCCAGTCGATGGCATGTTTAACAGGACTAC-AAA-GTTTT-CCACATGTATAGTTGGCCTATTT-TATGACT--
gi|24 : tctgaaaaaaacaaccc--TTA---TATCAAAATTGAA-TGA------TCTGAG----------GAAG-AA-------AC---G--TCAT-----GTCT--TT----GCCGACA----------C-TGA------------ACATAA----TTG-CA--ATA----AAA--T--------GAT---------AAAA-------
gi|25 : GCGAAAAACATAT-AT-AGCCCAAGACCAAGGCTATAACATTTTTGATCGGACctttaacaagga
gi|3 : cagtctGCGATAAATAGAC-CT-AGTCCGAGACTCAGTCTATTACATTTTTAATCGGACTACAAAA-ATATT-CCATATGTAAAGTCAGACTATTTCTATGAC----TA---TATCTCAATGGAA-CAA------ACTGAGCAAGATGTTGGGAGAAA--T-T-TAC---A--TAAT-----TTCT--TC----GCTGAAA----------C-TGA------------ATAAAT----CAA-TG--ACT----AAA--T--------GAT---------AAAA-------C----ATT-TAGAAAATGA---------T-ACTATAAATTTTA-----CGTCT----T-CTCTT-A------TTTTCGGACTATAAG--AATTG-AATTTAGA---CTG--T-TA--A-TTTGGA-A-------TGT--------------CTAAAGT--------TCAAAGAACTA------T-------AGTC---------------C----T------GAGAA-G-T-TTTTTACACaaatgattgaactatttatatcacaagagaccaaa
gi|4 : GCGAAAATTAGAT-AT-AGTCCGAAACCTAGCCTCTGACATTTTTAACCGGAATATGAAA-GTTTT-CCAAATGTAAAGCCTGGCTATTTCTATGACT--TTA---TATTGAAATTGAA-CAA------TCTGAGCAAGATGTTTGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATC----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAA-GAA---AC--CT-TATGTAAATTTTA-----GGTCT----T-CTGTC-A------TTTACAGACTATAAG--AAATG-AGTTGGGA---CAA--TGCA--GTTTTGGACA-------T-T--------------C--------------TC---------------T-------TTTC---------------C----T------GAAA----TATTTTGGCAC
gi|5 : GAAAAATAGAT-ATTAGTCTGAGACCCAGTCTATGACATTTTTAACTGGACTACAAAA-AATTT-CTAAATGTATAGTCCGACTATATTTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAGTAA--T-T-TAT---G--TAGT-----TTCC--TT----GCTGAAA----------C-TAA------------ag
gi|5 : tctatTCA--TT----ACTGAAA----------C-TAT------------ATAAAA----TTA-TG--ATG----AAA--T--------GAT----------AAA-------A----ATG-TAGAAAATGAA---AC--ggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaatcattactgaaactatataaaattatgatgaaatgataaaaatgtagaaaatgaaac
gi|6 : tctatgaaaaatagatattagtctgagacccagtctatgacatttttaactggactacaaaaaatttctaaatgtatagtccgactatatttatgactttatatcgaaatggaacaatctgagcaagatgttgggagtaatttatgtagtttccttgctgaaactaaggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaaGCGAAAAGTAGAT-CT-AGTCCGAGACTCAGTTTATGACATTCTTAACCAGACT-TAAAATGTTTT-CCAAACATTTGACCCGACTATTTCTATGACT--TCA---TATGGAAATGGAA-CCA------TTCTAGCGAGATGTTGCGAATGA--T-T-TCC---G--TATT-----TTCT--TT----GCTGAAA----------C-TAA------------ATTAAA----TAA-TA----T----AAA--T--------GA---------------------------------AAAGTAAA---AC--TT-----------TTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AACTCTGA---CTA--TGTA--ATTTTGGA-A-------TGTTTTAGGCCAAAGTAC--------------TA---------------T-------AGTC---------------C----T------AAAAA-A-A-TTATGGCA
gi|7 : tCGAAAAATAGGT-AT-AGTCCATGACCCAGCCCATGAAATCTTTAACCTGACTACAAAA-TTTTT-CCAAATG-------------TTTCTCTGACT--TTC---TATTGAAATGGAA-CAA------TCTTAGCAAGATGTTGGGAGAAA--T-T-GAC---A--TATTAAAACTTCA--TT----GTTGAAT----------T-TGA------------GTAAAA----TTA-TG--ATT----AAA--T--------G-T---------TAAA-------A----ATT-TAGAAAA-GTA---ACT-TT-ATTGTAAACTTTA-----GATCT----G-TTGTT-A------TTTACAGACTATAAG--AATTGTAATTTTGAAAGTTC--TCTA--GTTT--AA-A-------GGA--------------C--------------TA---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCGCgaca
gi|8 : GCAAAAAATAAAT-AT-AGTCCAAGACCTAGTCTATGACATTTTTAACCCGACTACAACA-GTTAT-CAAAATCAA-----CAACTATTTCTATGACT--TTGTATTATCTAAATGGAA-----------CTTAGCAAGATATTGGGAA-AA----G-AAC---G--TAGT-----TTCT--TT----GTTGAAA----------A-TGA------------ATAAAA----TTA-TG----T----AAA--TTTTA----GGTCTGGTATAAAAAA-------A----ATT-TACAAACTGAA---A
gi|8 : ctGAAAATGAATAAAA--TT-A-TGTAAATTTTA-----GGTCT----G-GTATA-AAAAAAATTTACAAACTGAAAG--AATTG-AATTCAGA---CTAGTTGTGATATTTTAGA-A-------TAT--------------C--------------TC---------------T-------ATTC---------------C----A------GAGGA-G-gaattgaattcagactagttgtgatattttagaatatctctattccagaggagcataaaaattggtactgggaatattttgtaa
gi|9 : ctgcaaaaaataaatatagtccaagacctagtctatgacatttttaacccgactacaacagttatcaaaatcaacaactatttctatgactttgtattatctaaatggaacttagcaagatattgggaaaagaacgtagtttctttgttAAAAACAGAT-TT-ATTCCAAGACACAGTCTACG-----------------ACA-----TTTT----------TAACCAGACTTTATCTATGACT--TTA---TATT---ATGGAA-CAA------TATGAGCAAGATGTTGTGAG-AAA-T-T-TAC---A--TAAT-----TTCT--TT----GCAGAAA----------A-AGA------------ATAAAA----TTA-TG--ATT----AAA--C--------AAT---------AAAA-------C-----TT-TA-AAAATGAA---AA--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------T----GGACTATAAC--AATTG-AATTGGGA---CTA--TGTC--ATTTTGGA-A-------TAT--------------C--------------TC---------------A-------AGTCTAAAGGACTACAGATC----T------GAAAT-GTT-TTTTGGCACcataaaaattggtactgggaatattttgtaa
blockSeqs : T T T T C T AT TAT A G ACTATAT A ATT A CCT AC AAAAC TC TTTA CCAAGGACCT A . . . ATTTTTC TTTTAGGTCTGGTATAAA ATTTTA GC TAA CCG AAA CTTAG TCAG C . AAAAAA CA T A AAG GT AT C . CTCGTGTCCAAAGGACTTT TAAAGGACTACAGATCT T T A
blockSeqs : . . . . C T . . G . T A AT . CA . A . . . . . . . AATG TTTGATG AA T . CT AA . . . . . . . A . . . . . CTAAAGTTCAAAGAACTAT CAAAGTACAAAG . . .
blockSeqs : . . . . A C . . A . T C TA . . . . . . . . . . . ATT TATGATA AA A . C AA . . . . . . . G . . . . . TTTAGGCCAAAGTACTAT CT . . .
blockSeqs : . . . . T G . . G . T A AT . . . . . . . . . . . ATT TGATA AC C . T AA . . . . . . . G . . . . . TTATAGGTCAA CT . . .
blockSeqs : . . . . T C . . A . T T AT . . . . . . . . . . . ATT TGATA AA T . C AA . . . . . . . G . . . . . CTCT GT . . .
blockSeqs : . . . . T A . . A . T T T . . . . . . . . . . . CTA TGATA AA T . C AA . . . . . . . A . . . . . CTCT CT . . .
blockSeqs : . . . . T T . . G . C A G . . . . . . . . . . . GTT TGATA AA T . C AA . . . . . . . G . . . . . TTTT CT . . .
blockSeqs : . . . . T T . . T . C . T . . . . . . . . . . . ATG TGATA AT T . A AC . . . . . . . A . . . . . CTCT CT . . .
blockSeqs : . . . . C C . . G . T . A . . . . . . . . . . . ATA CAATA AG T . C TA . . . . . . . A . . . . . CTCT CT . . .
blockSeqs : . . . . T C . . A . A . T . . . . . . . . . . . ACT GGAT CA T . C AT . . . . . . . A . . . . . CTAT CA . .
blockSeqs : . . . . A G . . T . T . T . . . . . . . . . . . ATC TAAT AA T . C AA . . . . . . . G . . . . . CTCT
blockSeqs : . . . . T A . . G . T . A . . . . . . . . . . . ATG CTGA AA T . A A . . . . . . . T . . . . . CTCA
blockSeqs : . . . . A T . . G . T . T . . . . . . . . . . . ATT TGAT AA T . A A . . . . . . . T . . . . . CTC
blockSeqs : . . . . A C . . G . T . T . . . . . . . . . . . ATT TGAT AA . . . . . . . . . . . A . . . . .
blockSeqs : . . . . T C . . G . T . T . . . . . . . . . . . T TGTT C . . . . . . . . . . . G .
blockSeqs : . . . . T C . . T . . . T . . . . . . . . . . . T TGA C . . . . . . . . .
blockSeqs : . . . . T A . . . . . . T . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : ************ **** ATT****** TGATA******************* AA*********** *******
originalCons : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
finalCons : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TGATT------AAATGATA-------------------AAAAA-----------TT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
Alignments
lowQualScore : 1 1111 111111111111 222222222222222222222222 555555555555555555555555555555555555555555555555555555 222222222222222222222222222
lowQualScore : 2 2 0 2 2 0 2 4 22 333 3 2 6666666 6 0000 2 666 22 77777 22 4444 8888888888 2 000000000000 4444 2 999999999 444444444444444444444444 9999999999999 44 0 333 777 555 55555 4444 2 2 666666 33 2 1 444 33 33 0 2 8888888 333333333333333333333333333333333333333333333333333333 333333333333333333333333333 3 3 4
lowQualScore : . . . . . . . . .. ... . . ....... . .... . ... .. ..... .. .... .......... . ............ .... . ......... ........................ ............. .. . ... ... ... ..... .... . . ...... .. . . ... .. .. . . ....... ...................................................... ........................... . . .
lowQualScore : 0 0 4 0 0 5 1 8 55 333 4 0 9999999 0 5555 0 222 88 00000 66 0000 8888888888 0 222222222222 5555 1 555555555 111111111111111111111111 3333333333333 44 3 777 333 444 66666 7777 2 2 444444 44 5 1 444 77 77 3 7 7777777 999999999999999999999999999999999999999999999999999999 444444444444444444444444444 6 6 0
consensus : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
Reference ( family-1124 ) : GCGAAAAATAGAT-AT-AGTCCGAGACCCAGTCTATGACATTTTTAACCGGACTACAAAA-GTTTT-CCAAACGTATAGCCCGACTATTTCTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATT----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAATGAA---AC--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AATTCGGA---CTA--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCAC
gi|1 : AAAAATAGAT-TT-AGTCCGAGACCCTGTCTTTGACATGTTTAACTGGGTAACAGAA-GTTTT-CCAAACGTATAGCATGACTGTTTCTATGACT--TTA---TATCGAAATCGAA-CAA------TGTGAGCAAGATGTTGGGAGAAA--T-T-TAC---G--TAGT-----CAGA--CT----ACTGAAA----------T-CAAGGACCTATATTTATAGAAGTCCTTGCTGAAACC----AAA--TAATATTACGAT---------GAAATGATAAAA----ATT-TAGAAAATGAA---AC--TT-GATGTAAATTTTA-----GGGCT----T-TTTTTCA------TTTACAGACTTTAAG--AATTG-AATTCAGA---CTT--TGTA--ATTTAAGA-AGATCTTTTGT--------------CCAAAGGGCTATAATTA---------------T-------AGTC---------------G----T------GAAAA-G-T-TCTTGGCAC
gi|10 : aCGAAAAATAAAT-AT-AGTCTGCGACCCAGTCTATGACATTTTTAACCAGACTACAAAT-GTTTT-CCAAATGCACAGCCTGACTATTTCTATGAC---------TATCAAAATAGAA-CAA------TCTGAGCAAGTTTCTGAGAGAAA--T-T-TTC---G--TAGA-----TTCT--TT----GTTGAAA----------C-TAA------------ATTAAA----TAA-CA--ATT----AAA--G--------GAT----------AAA-------A----ATT-TAGAAAATGAA---AC--TG-AATGTAAATTTTA-----GA-------T-CAGTT-A------TTTACGGATTATAAG--AATTG-AAACCAGA---CTA--TGTA--A-TTTGGA-T-------TGT--------------T--------------TC---------------aga
gi|11 : ctaGCGAAAAATATAT-AA-AGTCAGAGACCCGCACTATATCATTTTTGATCAGACTA-------TTTT-CTAAACCTACAGTGTGATCA-------GACTATTTA---TATC-AAATGAAG-C--------------CAA-AT-TCAGGAA-AG--G-T-T--------TGGT-----CTCT------------AAA----------TATAA------------ACAAGA----TTA-GA--ATTTTTCACATTT--------GAT---------GTAA-------A----AT--------ATGTA---ACCGTT-A--------TTTA-----GTTCT----TCCCGTT--------TTTACGAAT--CAAGCAAAATC-AATTGAGG---TCA--TATA--TCTTTGTT-A-------AGT--------------T--------------TA---------------TAGGTCAAAGTC---------------C----T------GAAAA-G-T-TTT
gi|12 : agtctAAACTGAT-AT-AGT--GAGACCCAATCTATAACATT-------------CATAT-GATTT-TCAAACATAAAGTC-AACTATTTCTATGACT--TGA---TATGGAAATGGAA-CAA------------------GCTGGGAG-AAA-T-T-TAC---G--T---------TGT--TC----GCAGAAA----------C-TGA------------ATAAAA----TTA-AA--ATT----GAA--TAT------GAT---------AAAG-------C-----TT-AAGAAAATGAA---AT--TT-AATGTACAATTTA-----AGTCT----T-CTGTT-A------CTTACAGACCATAAT--AATT--AATTCGGA---CGT--TGTA--ATTTTGGA-A-------TGT--------------C--------------TC-----------------------AGAC---------------C----T------GAAAA-G-A-TTTTa
gi|13 : T-AA-AGTCCTTAAGCCATTCT--GACATTTT-AACGGAACTACAAAA-GTTTC-CCAAATGGTTAACCCGACTATTTCTTTGACT--TAA---TATCATAATGGAA-GAA------TCTGAGCAAGATGTT----G-AA--TAT-CACCCTG--TGATA----TTCTTCTT----GCTGAAA----------C-TGA------------AAAAAA----TTA-TG--ATT----AAA--T--------AAT----------AAA-------A----CTT-CAGAAAATGAA---AC--GT-AATGTAAATTTTA-----GGTCTTCAGT-CTGTT-T------TTTATGGACTACAAG--CATTG-AATTCGGA---C
gi|14 : tgAATAAATTAT-AGTCTGATACCAAATCTGTGACATTTTTAAATGCACTACAAAA-GTTTT-CCAAAGGTATAGCTGGACTATTTCTA--ACT--TCA---TACCGAAATGGAA-CAG------TCTAAGCATAATGTTGGGAGAAA--T-T-TAA---G--TAGT-----TTCT--TT----ACTGAAACCAAGGACCTC-TGC------------ATAAGT----CTT-TG--CTA----AAAC-T--------G-----------AATA-------ATTTTATT-TAGAAAATAAA---AC--TT-AATTTAAATTTTA-----GGACT-------TGTT-A------TTTAC-GACT
gi|15 : atatAAAATAGAT-AT-AGTCCAAGACCCAGTCTATGACATTTTCAACCAGACTACAAAT-ATTTT-CCAAAC-TATAACACCATTATTTCCATGACT--TTA---TATCAAAATGGAA-CAA------TCTGAGCAAGAAGTTGGGAG-AA--A-T-T-C---GACTAGT-----TTAT--TT----GCTGAAA----------C-TCA------------ATAAAA----TTA-TG--GTT----AAA--T--------GAT-----------AA-------A----ATTGCAGAAAATGAA---AC--TTAAATGTTAATTTTA-----TGTCT----T-CTGTT-A------TATACAAACTATgg
gi|16 : TTTCCATAACT--ATT---TAGTAAAATAGAA-AAA------TCTGAGC----TGATGGGAG-AAA-T-T-TAA---C--TAGT-----TTCT--TT----GCTGAAA----------C-TGA-------------------------------------AAA--C----------------------AA-------A----ATT-------ACCCA---A----T-AATGTAAATTTTA-----TATCC----T-CTGTT-A------TTTACGGACTATAAC--AATTT-AATTTGGA---C----TGTA--TTTTTGGA-A-------AGT--------------C--------------TC---------------T-------AGTC---------------C----
gi|17 : tatttcatatacaatatgaaacctccttaagtcGCAAAAAATAGAT-------CCAAGACCCAGTCTATGACATTTTAATCTGGTCTACAAAA-CTTTT-CCAAACGTATAGCAAGACTATTTCTACGACT--TCA---TATTGAAATGGAA-CAA---------------GATG----AAGCAA--T-C-TAC---A--TAGC-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----T------------------------------------------AA-------A----ACT-TAG--------------------TGTAATTTTTA-----GG-------T-CCATT-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--TGTG--ATTTTGGA-A-------TGT--------------C--------------TC---------------T-------AGTaaacgacttcaatccagtcagaagagattttcac
gi|18 : tctAATGGAA-CAA------CCTTAGCAAGATGTTGCGAG-AAATT-T-TA----A--TTGT-----TTTT--TTTTTAGCTGAAA----------C-TGA------------ATAAAA----TTA-TGA-ATG----AAA--T--------GAT---------AAAT-------A----TTT-TAGA-------------------------------------TCT----T-CTGTA-A------CTT----ACTATAAG--AACTG-AATTCGGA---CTA--TGTA--AATTTGGA-A-------TGT--------------T--------------TT---------------T-------AGTC---------------C----
gi|19 : GACTATAAAA-GTTTT-TTAAATGTATAGCCTGACTATTTCTATGAC----TA---TATCTAAATGGAA-CAA------CCTGAGCAAGATTTT-------A--T-G-TACCA-G--TAGT-----TTCT--TT----GCTGAAga
gi|2 : taattatgataataatcttaaacaaaaatgatgtaaaGCGAAAAATAGGT-AT-AATCTGAGAACGAGTCTATGACACTTTTAACTGTACTACGAAA-GTTTTTCCAAATGTACAGCCTGACTATTTCT--GACT--TTA---TATTGAAATGAAAGCAAACTATATATGAGCAGGATATTGTGAG-AA--A-TAGAT---G--AAGT-----TTCT--TT----ACTAAAA----------C-TAA------------AGAAAA----TTA-TC--ATG----AAA--T--------GAT---------AAAC-------A----GTT--AGAAA-CGAA---AA--TT-AATGTAAATTTTACTTAGGGTCA----C-CTGTC-A------TTTACGGACTATAAG--AATTG-AATCCAGA---CTA--CGTA--ATATTGGA-A-------AGT--------------C--------------TC---------------T-------AGTC---------------CAAAGTACAAAGGAAAATG-T-TTTTGGCAC
gi|20 : tGTAAGTTTTA-----GGTCT----T-CTGTT-A------TTTATGGACTATAAG--AATTG-AATTCAAA---CTG--T-TA--CTTTCGGA-A-------TGT--------------C--------------TCGTGTCCAAAGGACTTT-------AGTC---------------G----T------GAAAA-G-T-TTTTGACtg
gi|21 : atttaGCGAAAAATAGAT-AT-AGTCAGAGATCAAGTCTACGACATTTA-AACTGGACTACAATA-TTTTT-TCAAACGTATAGCCCGACTATTACTATGACT--TTA---TATCt
gi|22 : ctGCTAAAAATAGTT-AC-AGTCTGAGACCCAGTCTGTGACATTTTTAACCACACTACAAAA-GTTTT-CCAAACGTAAAGCCCAAATATTTCTGTGACT--TTA---TATCc
gi|23 : tAGAT-GT-AGTCCAAGATCCAGTCGATGGCATGTTTAACAGGACTAC-AAA-GTTTT-CCACATGTATAGTTGGCCTATTT-TATGACT--
gi|24 : tctgaaaaaaacaaccc--TTA---TATCAAAATTGAA-TGA------TCTGAG----------GAAG-AA-------AC---G--TCAT-----GTCT--TT----GCCGACA----------C-TGA------------ACATAA----TTG-CA--ATA----AAA--T--------GAT---------AAAA-------
gi|25 : GCGAAAAACATAT-AT-AGCCCAAGACCAAGGCTATAACATTTTTGATCGGACctttaacaagga
gi|3 : cagtctGCGATAAATAGAC-CT-AGTCCGAGACTCAGTCTATTACATTTTTAATCGGACTACAAAA-ATATT-CCATATGTAAAGTCAGACTATTTCTATGAC----TA---TATCTCAATGGAA-CAA------ACTGAGCAAGATGTTGGGAGAAA--T-T-TAC---A--TAAT-----TTCT--TC----GCTGAAA----------C-TGA------------ATAAAT----CAA-TG--ACT----AAA--T--------GAT---------AAAA-------C----ATT-TAGAAAATGA---------T-ACTATAAATTTTA-----CGTCT----T-CTCTT-A------TTTTCGGACTATAAG--AATTG-AATTTAGA---CTG--T-TA--A-TTTGGA-A-------TGT--------------CTAAAGT--------TCAAAGAACTA------T-------AGTC---------------C----T------GAGAA-G-T-TTTTTACACaaatgattgaactatttatatcacaagagaccaaa
gi|4 : GCGAAAATTAGAT-AT-AGTCCGAAACCTAGCCTCTGACATTTTTAACCGGAATATGAAA-GTTTT-CCAAATGTAAAGCCTGGCTATTTCTATGACT--TTA---TATTGAAATTGAA-CAA------TCTGAGCAAGATGTTTGGAG-AA--T-T-TAC---G--TAGT-----TTCT--TT----GCTGAAA----------C-TGA------------ATAAAA----TTA-TG--ATC----AAA--T--------GAT---------AAAA-------A----ATT-TAGAAAA-GAA---AC--CT-TATGTAAATTTTA-----GGTCT----T-CTGTC-A------TTTACAGACTATAAG--AAATG-AGTTGGGA---CAA--TGCA--GTTTTGGACA-------T-T--------------C--------------TC---------------T-------TTTC---------------C----T------GAAA----TATTTTGGCAC
gi|5 : GAAAAATAGAT-ATTAGTCTGAGACCCAGTCTATGACATTTTTAACTGGACTACAAAA-AATTT-CTAAATGTATAGTCCGACTATATTTATGACT--TTA---TATCGAAATGGAA-CAA------TCTGAGCAAGATGTTGGGAGTAA--T-T-TAT---G--TAGT-----TTCC--TT----GCTGAAA----------C-TAA------------ag
gi|5 : tctatTCA--TT----ACTGAAA----------C-TAT------------ATAAAA----TTA-TG--ATG----AAA--T--------GAT----------AAA-------A----ATG-TAGAAAATGAA---AC--ggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaatcattactgaaactatataaaattatgatgaaatgataaaaatgtagaaaatgaaac
gi|6 : tctatgaaaaatagatattagtctgagacccagtctatgacatttttaactggactacaaaaaatttctaaatgtatagtccgactatatttatgactttatatcgaaatggaacaatctgagcaagatgttgggagtaatttatgtagtttccttgctgaaactaaggacttctatataaatccttgctgaaactaaggacctctatataaatccttgctgaaactaaggacctctatataaaGCGAAAAGTAGAT-CT-AGTCCGAGACTCAGTTTATGACATTCTTAACCAGACT-TAAAATGTTTT-CCAAACATTTGACCCGACTATTTCTATGACT--TCA---TATGGAAATGGAA-CCA------TTCTAGCGAGATGTTGCGAATGA--T-T-TCC---G--TATT-----TTCT--TT----GCTGAAA----------C-TAA------------ATTAAA----TAA-TA----T----AAA--T--------GA---------------------------------AAAGTAAA---AC--TT-----------TTA-----GGTCT----T-CTGTT-A------TTTACGGACTATAAG--AATTG-AACTCTGA---CTA--TGTA--ATTTTGGA-A-------TGTTTTAGGCCAAAGTAC--------------TA---------------T-------AGTC---------------C----T------AAAAA-A-A-TTATGGCA
gi|7 : tCGAAAAATAGGT-AT-AGTCCATGACCCAGCCCATGAAATCTTTAACCTGACTACAAAA-TTTTT-CCAAATG-------------TTTCTCTGACT--TTC---TATTGAAATGGAA-CAA------TCTTAGCAAGATGTTGGGAGAAA--T-T-GAC---A--TATTAAAACTTCA--TT----GTTGAAT----------T-TGA------------GTAAAA----TTA-TG--ATT----AAA--T--------G-T---------TAAA-------A----ATT-TAGAAAA-GTA---ACT-TT-ATTGTAAACTTTA-----GATCT----G-TTGTT-A------TTTACAGACTATAAG--AATTGTAATTTTGAAAGTTC--TCTA--GTTT--AA-A-------GGA--------------C--------------TA---------------T-------AGTC---------------C----T------GAAAA-G-T-TTTTGGCGCgaca
gi|8 : GCAAAAAATAAAT-AT-AGTCCAAGACCTAGTCTATGACATTTTTAACCCGACTACAACA-GTTAT-CAAAATCAA-----CAACTATTTCTATGACT--TTGTATTATCTAAATGGAA-----------CTTAGCAAGATATTGGGAA-AA----G-AAC---G--TAGT-----TTCT--TT----GTTGAAA----------A-TGA------------ATAAAA----TTA-TG----T----AAA--TTTTA----GGTCTGGTATAAAAAA-------A----ATT-TACAAACTGAA---A
gi|8 : ctGAAAATGAATAAAA--TT-A-TGTAAATTTTA-----GGTCT----G-GTATA-AAAAAAATTTACAAACTGAAAG--AATTG-AATTCAGA---CTAGTTGTGATATTTTAGA-A-------TAT--------------C--------------TC---------------T-------ATTC---------------C----A------GAGGA-G-gaattgaattcagactagttgtgatattttagaatatctctattccagaggagcataaaaattggtactgggaatattttgtaa
gi|9 : ctgcaaaaaataaatatagtccaagacctagtctatgacatttttaacccgactacaacagttatcaaaatcaacaactatttctatgactttgtattatctaaatggaacttagcaagatattgggaaaagaacgtagtttctttgttAAAAACAGAT-TT-ATTCCAAGACACAGTCTACG-----------------ACA-----TTTT----------TAACCAGACTTTATCTATGACT--TTA---TATT---ATGGAA-CAA------TATGAGCAAGATGTTGTGAG-AAA-T-T-TAC---A--TAAT-----TTCT--TT----GCAGAAA----------A-AGA------------ATAAAA----TTA-TG--ATT----AAA--C--------AAT---------AAAA-------C-----TT-TA-AAAATGAA---AA--TT-AATGTAAATTTTA-----GGTCT----T-CTGTT-A------T----GGACTATAAC--AATTG-AATTGGGA---CTA--TGTC--ATTTTGGA-A-------TAT--------------C--------------TC---------------A-------AGTCTAAAGGACTACAGATC----T------GAAAT-GTT-TTTTGGCACcataaaaattggtactgggaatattttgtaa