lowQualScore : 3333333333333333333333333333333333333333333333333
lowQualScore : 22 1 1 2222 44444 1 1 1 11 6666666666 1 2 11 2 4444444444444444444444444444444444444444444444444 1 11 22222 333333333 1 22 1 11 11 55555555555 1 2 1 1 1 88888888888888888888 1 11 11111 222 333333 444444444444 1 1 1 1 2 1 2222 22 1 1 1 8888 1
lowQualScore : 11 7 7 6 6666 6 6 6 6 66666 7 5 5 3 88 3 6 0000000000 5 0 22 0 3333333333333333333333333333333333333333333333333 6 7 6 22 66666 444444444 5 11 5 22 3 88 3 88888888888 5 4 0 6 2 4 6 0 6 99999999999999999999 6 5 22 99999 777 222222 555555555555 5 6 5 6 5 6 6 4 5 0 2 4 4 5 9999 55 6 6 7 6 5 6 6 6 6 6 6 6 5 6 5555 6 7 2 2
lowQualScore : .. . . . .... . . . . ..... . . . . .. . . .......... . . .. . ................................................. . . . .. ..... ......... . .. . .. . .. . ........... . . . . . . . . . .................... . . .. ..... ... ...... ............ . . . . . . . . . . . . . . .... .. . . . . . . . . . . . . . . .... . . . .
lowQualScore : 00 0 0 0 0000 0 0 0 0 00000 0 0 0 0 00 0 0 0000000000 0 0 00 0 0000000000000000000000000000000000000000000000000 0 0 0 00 00000 000000000 0 00 0 00 0 00 0 55555555555 0 0 0 0 5 0 0 5 0 00000000000000000000 0 0 00 00000 000 000000 000000000000 0 0 0 0 0 0 0 0 0 0 5 0 0 0 5555 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0000 0 0 7 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCANGTTTGTTCNAGTCACTATANTGTGAATTCGTCGGAAAGACATGGCCGCCACGGTG--AGGTGCTAGTTTATTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCANGTTTGTTCNAGTTGTCACNTTGTGANTCGTCGGAAAGACATGGCCGCCACGGNGGGGNGCTGGTTTNCTTTATGTGNATAGGCAGCTATAGTGAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGANTCGTCGGAAAGACATGGCCGCCACGGNGGGGNGCTGGTTTNCTTTATGTGGGCAGCTATAGTGAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATCGCA
Reference ( gi|1 ) : GTTTGTCCTTCCAACATTTTCGCATCCTGTCTTTTCATACATGGAAGAATTTTAAAATAACATGTCACAAATAATCACCATGCTGAGACTACAAGTTATATGCAGATCCAAGGTCAAGTTCTCAGGTGAAGCGGGGTCATAGAGCAATGGATAAAGTGTTGACTGCTCACACCAGAGGTTGTGGGTTTGATCTTCAGCTCGATCCAATGCTTCTTAAAAAAATCTCAACTAAGTATTGGTTCTACCCAGTAACCTGACTCGGGAGTGGTTCATGTAATCGTGCAATTAAGCTAAGTTAGTATGTAAAAAAGAAATGGGGTCATATTTATGAAATCATATAAAAAAAGTAAAATGTATCTTTTATAGTCACAAACTTTTTAGCTCACCTGTGATAAAGGCTAACAGGTGAGCTTTTGTGATCGACTGGTGTCTGTCGTCCATCGTTAAATTTTAGCTTTTAACAACTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATC---TTG---ATTCGTCAAAAA-ACATGGCCATCA-GGTGGCAGG-GCAAGTTTA----AT---------TAGTAAAA----------TCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAA---ACCATA--GTTATTCGTCAAAAA-ACATGGCAGCCAGAGAGTGGGGTTAGTTTAC------TAAATA---AGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGATTGGTTAAAAA-ACATGACTGCCACAGTGAGGAGATAGTTTAC--TATATAGGCAACTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGATCCGATTTCGATGTAATTTCACTTACATTTACCATGGGTGAACATCTACCAAGTTTGTTCCAGCCATTGCGATTCGCCGAAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTGATATGGATATATTTATAGTAAAAACATTCTTTTGATATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATCGCA
gi|2 : CTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACT---GTG---ATTCGTCGGAAA-ACATAGTTGCCA-GG
gi|2 : acacgttttcaagttattatattgtgaattgttaaaaagacatgaccgccacagtgaggtgctagtttattatataggcagctatagtaaaaacttcaaaagcCACGTTT--TCAAGTTATTATATTGTGAATT-GTTAAAAAGACATGACCGCCACAGTG--AGGTGCTAGTTTATTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCA---GTCACT--GTGATTCGTCGGAAA-ACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA------TATAGTGAAAACTTaagggaagctggttttctttatgtggatatatagtgaaaactttctttcgatatctgatatctagatatcctcacaaggattctattgttatcgc
gi|2 : aCACGTTT--TCAAGTTATTATATTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTAT------TATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAA-ACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA--TATAGTGAAAACTTtctttcgatatctgatatctagatatcctcacaaggattctattgttatcgc
gi|2 : aTTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTAT--TATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCT-GATATCTAGATATCCTCACAAGGATTCTATTGTTATCGCtctttcgatatctgatatctagatatcctcacaaggattctattgttatcgc
gi|4 : acacgttttcaagttattataTTCGATATCT-GATATCCAGATATCCACACAAGGATACTATTGTTATCGCA
gi|5 : TTCAATATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATGGCA
gi|6 : TTCAATATCT-GATATCCAAATATTCGCACAAGGATACTATTGTTATCGCA
gi|17 : TTTGATATCT-GATATCAAGATATCCGCACAAGGATACTTTTGTT
gi|3 : TCTGATATCCAGATATCCACATATCCACACAAGGATACTATTGTTATCACA
gi|8 : cgataTCGATATCT-GATATCCAGATATCTGCACAAGGATACTATTGTTATCACA
gi|9 : TCGATATCT-GATATCCAGATATCCGCACAAGGATTCTATTGTTATTGCA
gi|14 : TCGATATCT-GATATCAAAATATCCGCACAATGATACCATTGTTGTCG
gi|12 : GATATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATCGCA
gi|11 : GATATCT-GATATCCAGATATCTGGACAAGGATACTGTTGTTATCGCA
gi|13 : cGATATCT-GATATCCAGATATCCGCACAAGGATATTATTGTTAT
gi|10 : cGATAGCT-GCTATCCAGATATCCGTACAAGGGTACTATTGTTATCGCAggt
gi|16 : cATATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATCGCA
gi|15 : ATATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATCGCA
gi|7 : ATATCT-GATATCCAGATATCTGCACAAGGATATTATTGTTATCGCA
gi|18 : ttctATCT-GATATCCAGATATCCGCACAAGGATACTATTGTTATCGCA
gi|19 : ATATCCAGATATCCGCACAAGGATACTATTGTTATTGCA
gi|20 : ATATCCGCACAAGAATACTATTGTAATCGCA
Alignments
lowQualScore : 11111111111111 333333333333333333333333333333333333333333333333333333 1111111 11111111111111
lowQualScore : 22 1 1 2222 44444 1 1 1 00000000000000 11 4 11 444444444444444444444444444444444444444444444444444444 1 11 22222 333333333 1 22 1 11 1111111 1 1 11 4 1 22 1 66666666666666 1 11 11111 222 333333 444444444444 1 1 1 1 111 1 33333 4444
lowQualScore : 11 7 7 6 6666 6 6 6 6 66666 7 5 5 1 1 00000000000000 22 0 22 444444444444444444444444444444444444444444444444444444 6 7 6 22 66666 444444444 5 11 5 22 1 1 2222222 1 7 5 1 22 0 5 11 1 5 1 6 6 1 55555555555555 6 6 5 22 99999 777 222222 555555555555 5 6 5 6 5 6 6 1 0 888 5 6 6 1 6 1 2 6 77777 6 6 6 4 2 3 2222 4 77777777
lowQualScore : .. . . . .... . . . . ..... . . . . . .............. .. . .. ...................................................... . . . .. ..... ......... . .. . .. . . ....... . . . . .. . . .. . . . . . . .............. . . . .. ..... ... ...... ............ . . . . . . . . . ... . . . . . . . . ..... . . . . . . .... . ........
lowQualScore : 00 0 0 0 0000 0 0 0 0 00000 0 0 0 0 0 00000000000000 00 0 00 000000000000000000000000000000000000000000000000000000 0 0 0 00 00000 000000000 0 00 0 00 0 0 0000000 0 0 0 0 00 0 0 00 0 0 0 0 0 0 00000000000000 0 0 0 00 00000 000 000000 000000000000 0 0 0 0 0 0 0 0 5 000 0 0 0 0 0 0 5 0 55555 0 0 0 0 5 0 5555 0 22222222
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAG---CTATCTTG---ATTCGTCAAAAA-ACATGGCCATCA-GGTGGCAGG-GCAAGTTTA----AT---------TAGTAAAA----------TCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAAC-----CATAGTTATTCGTCAAAAA-ACATGGCAGCCAGAGAGTGGGGTTAGTTTACT------AAATA---AGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
Reference ( family-1039 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCANGTTTGTTCNAGTCACTATANTGTGAATTCGTCGGAAAGACATGGCCGCCACGGTG--AGGTGCTAGTTTATTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCANGTTTGTTCNAGTTGTCACNTTGTGANTCGTCGGAAAGACATGGCCGCCACGGNGGGGNGCTGGTTTNCTTTATGTGNATAGGCAGCTATAGTGAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGANTCGTCGGAAAGACATGGCCGCCACGGNGGGGNGCTGGTTTNCTTTATGTGGGCAGCTATAGTGAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|1 : CTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAG---CTATCTTG---ATTCGTCAAAAA-ACATGGCCATCA-GGTGGCAGG-GCAAGTTTA----AT---------TAGTAAAA----------TCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAAC-----CATAGTTATTCGTCAAAAA-ACATGGCAGCCAGAGAGTGGGGTTAGTTTACT------AAATA---AGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGATTGGTTAAAAA-ACATGACTGCCACAGTGAGGAGATAGTTTACT--ATATAGGCAACTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGATCCGATTTCGATGTAATTTCACTTACATTTACCATGGGTGAACATCTACCAAGTTTGTTCCAGCCATTGCGATTCGCCGAAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTGATATGGATATATTTATAGTAAAAACATTCTTTTGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|10 : gtttgtccttccaacattttcgcatcctgtcttttcatacatggaagaattttaaaataacatgtcacaaataatcaccatgctgagactacaagttatatgcagatccaaggtcaagttctcaggtgaagcggggtcatagagcaatggataaagtgttgactgctcacaccagaggttgtgggtttgatcttcagctcgatccaatgcttcttaaaaaaatctcaactaagtattggttctacccagtaacctgactcgggagtggttcatgtaatcgtgcaattaagctaagttagtatgtaaaaaagaaatggggtcatatttatgaaatcatataaaaaaagtaaaatgtatcttttatagtcacaaactttttagctcacctgtgataaaggctaacaggtgagcttttgtgatcgactggtgtctgtcgtccatcgttaaattttagcttttaacaaCGATAGCTGCTATCCAG--------ATATCCGTACAAGGGTACTATTGTTATCGCA
gi|11 : CGATATCTGATATCCAG--------ATATCTGGACAAGGATACTGTTGTTATCGCA
gi|12 : GATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|13 : CGATATCTGATATCCAG--------ATATCCGCACAAGGATATTATTGTTAT
gi|14 : TCGATATCTGATATCAAA--------ATATCCGCACAATGATACCATTGTTGTCGggt
gi|15 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|16 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|17 : TTTGATATCTGATATCAAG--------ATATCCGCACAAGGATACTTTTGTT
gi|18 : ATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|19 : ATATCCAG--------ATATCCGCACAAGGATACTATTGTTATTGCA
gi|2 : ATTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTA--TTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCTGATATCTAG--------ATATCCTCACAAGGATTCTATTGTTATCGC
gi|20 : acacgttttcaagttattat--------ATATCCGCACAAGAATACTATTGTAATCGCA
gi|3 : CGATATCTGATATCCAGATATCCACATATCCACACAAGGATACTATTGTTATCACAc
gi|4 : TTCGATATCTGATATCCAG--------ATATCCACACAAGGATACTATTGTTATCGCA
gi|5 : TTCAATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATGGCA
gi|6 : TTCAATATCTGATATCCAA--------ATATTCGCACAAGGATACTATTGTTATCGCA
gi|7 : TTCTATATCTGATATCCAG--------ATATCTGCACAAGGATATTATTGTTATCGCA
gi|8 : TCGATATCTGATATCCAG--------ATATCTGCACAAGGATACTATTGTTATCACA
gi|9 : TCGATATCTGATATCCAG--------ATATCCGCACAAGGATTCTATTGTTATTGCA
Alignments
lowQualScore : 1 444 2222
lowQualScore : 1 1 5 1 1 555 1 1 1 4444 1 77777777
lowQualScore : . . . . . ... . . . .... . ........
lowQualScore : 0 0 0 0 0 555 0 0 0 5555 0 22222222
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTAC-TTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
Reference ( family-1039 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|1 : CTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGATTGGTTAAAAA-ACATGACTGCCACAGTGAGGAGATAGTTTAC--TATATAGGCAACTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGATCCGATTTCGATGTAATTTCACTTACATTTACCATGGGTGAACATCTACCAAGTTTGTTCCAGCCATTGCGATTCGCCGAAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTGATATGGATATATTTATAGTAAAAACATTCTTTTGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|10 : gtttgtccttccaacattttcgcatcctgtcttttcatacatggaagaattttaaaataacatgtcacaaataatcaccatgctgagactacaagttatatgcagatccaaggtcaagttctcaggtgaagcggggtcatagagcaatggataaagtgttgactgctcacaccagaggttgtgggtttgatcttcagctcgatccaatgcttcttaaaaaaatctcaactaagtattggttctacccagtaacctgactcgggagtggttcatgtaatcgtgcaattaagctaagttagtatgtaaaaaagaaatggggtcatatttatgaaatcatataaaaaaagtaaaatgtatcttttatagtcacaaactttttagctcacctgtgataaaggctaacaggtgagcttttgtgatcgactggtgtctgtcgtccatcgttaaattttagcttttaacaaCGATAGCTGCTATCCAG--------ATATCCGTACAAGGGTACTATTGTTATCGCA
gi|11 : CGATATCTGATATCCAG--------ATATCTGGACAAGGATACTGTTGTTATCGCA
gi|12 : GATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|13 : CGATATCTGATATCCAG--------ATATCCGCACAAGGATATTATTGTTAT
gi|14 : TCGATATCTGATATCAAA--------ATATCCGCACAATGATACCATTGTTGTCGggt
gi|15 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|16 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|17 : TTTGATATCTGATATCAAG--------ATATCCGCACAAGGATACTTTTGTT
gi|18 : ATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|19 : ATATCCAG--------ATATCCGCACAAGGATACTATTGTTATTGCA
gi|2 : TTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTA--TTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCTGATATCTAG--------ATATCCTCACAAGGATTCTATTGTTATCGC
gi|20 : acacgttttcaagttattata--------ATATCCGCACAAGAATACTATTGTAATCGCA
gi|3 : CGATATCTGATATCCAGATATCCACATATCCACACAAGGATACTATTGTTATCACAc
gi|4 : TTCGATATCTGATATCCAG--------ATATCCACACAAGGATACTATTGTTATCGCA
gi|5 : TTCAATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATGGCA
gi|6 : TTCAATATCTGATATCCAA--------ATATTCGCACAAGGATACTATTGTTATCGCA
gi|7 : TTCTATATCTGATATCCAG--------ATATCTGCACAAGGATATTATTGTTATCGCA
gi|8 : TCGATATCTGATATCCAG--------ATATCTGCACAAGGATACTATTGTTATCACA
gi|9 : TCGATATCTGATATCCAG--------ATATCCGCACAAGGATTCTATTGTTATTGCA
Alignments
lowQualScore : 1 33 2222
lowQualScore : 1 1 5 1 1 00 1 1 1 4444 1 77777777
lowQualScore : . . . . . .. . . . .... . ........
lowQualScore : 0 0 0 0 0 55 0 0 0 5555 0 22222222
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
Reference ( family-1039 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|1 : CTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGATTGGTTAAAAA-ACATGACTGCCACAGTGAGGAGATAGTTTAC-TATATAGGCAACTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGATCCGATTTCGATGTAATTTCACTTACATTTACCATGGGTGAACATCTACCAAGTTTGTTCCAGCCATTGCGATTCGCCGAAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTGATATGGATATATTTATAGTAAAAACATTCTTTTGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|10 : gtttgtccttccaacattttcgcatcctgtcttttcatacatggaagaattttaaaataacatgtcacaaataatcaccatgctgagactacaagttatatgcagatccaaggtcaagttctcaggtgaagcggggtcatagagcaatggataaagtgttgactgctcacaccagaggttgtgggtttgatcttcagctcgatccaatgcttcttaaaaaaatctcaactaagtattggttctacccagtaacctgactcgggagtggttcatgtaatcgtgcaattaagctaagttagtatgtaaaaaagaaatggggtcatatttatgaaatcatataaaaaaagtaaaatgtatcttttatagtcacaaactttttagctcacctgtgataaaggctaacaggtgagcttttgtgatcgactggtgtctgtcgtccatcgttaaattttagcttttaacaaCGATAGCTGCTATCCAG--------ATATCCGTACAAGGGTACTATTGTTATCGCA
gi|11 : CGATATCTGATATCCAG--------ATATCTGGACAAGGATACTGTTGTTATCGCA
gi|12 : GATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|13 : CGATATCTGATATCCAG--------ATATCCGCACAAGGATATTATTGTTAT
gi|14 : TCGATATCTGATATCAAA--------ATATCCGCACAATGATACCATTGTTGTCGggt
gi|15 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|16 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|17 : TTTGATATCTGATATCAAG--------ATATCCGCACAAGGATACTTTTGTT
gi|18 : ATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|19 : ATATCCAG--------ATATCCGCACAAGGATACTATTGTTATTGCA
gi|2 : TTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTA-TTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCTGATATCTAG--------ATATCCTCACAAGGATTCTATTGTTATCGC
gi|20 : acacgttttcaagttattata--------ATATCCGCACAAGAATACTATTGTAATCGCA
gi|3 : CGATATCTGATATCCAGATATCCACATATCCACACAAGGATACTATTGTTATCACAc
gi|4 : TTCGATATCTGATATCCAG--------ATATCCACACAAGGATACTATTGTTATCGCA
gi|5 : TTCAATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATGGCA
gi|6 : TTCAATATCTGATATCCAA--------ATATTCGCACAAGGATACTATTGTTATCGCA
gi|7 : TTCTATATCTGATATCCAG--------ATATCTGCACAAGGATATTATTGTTATCGCA
gi|8 : TCGATATCTGATATCCAG--------ATATCTGCACAAGGATACTATTGTTATCACA
gi|9 : TCGATATCTGATATCCAG--------ATATCCGCACAAGGATTCTATTGTTATTGCA
Alignments
lowQualScore : 1 33 2222
lowQualScore : 1 1 5 1 1 00 1 1 1 4444 1 77777777
lowQualScore : . . . . . .. . . . .... . ........
lowQualScore : 0 0 0 0 0 55 0 0 0 5555 0 22222222
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
Reference ( family-1039 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|1 : CTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGATTGGTTAAAAA-ACATGACTGCCACAGTGAGGAGATAGTTTAC-TATATAGGCAACTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGATCCGATTTCGATGTAATTTCACTTACATTTACCATGGGTGAACATCTACCAAGTTTGTTCCAGCCATTGCGATTCGCCGAAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTGATATGGATATATTTATAGTAAAAACATTCTTTTGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|10 : gtttgtccttccaacattttcgcatcctgtcttttcatacatggaagaattttaaaataacatgtcacaaataatcaccatgctgagactacaagttatatgcagatccaaggtcaagttctcaggtgaagcggggtcatagagcaatggataaagtgttgactgctcacaccagaggttgtgggtttgatcttcagctcgatccaatgcttcttaaaaaaatctcaactaagtattggttctacccagtaacctgactcgggagtggttcatgtaatcgtgcaattaagctaagttagtatgtaaaaaagaaatggggtcatatttatgaaatcatataaaaaaagtaaaatgtatcttttatagtcacaaactttttagctcacctgtgataaaggctaacaggtgagcttttgtgatcgactggtgtctgtcgtccatcgttaaattttagcttttaacaaCGATAGCTGCTATCCAG--------ATATCCGTACAAGGGTACTATTGTTATCGCA
gi|11 : CGATATCTGATATCCAG--------ATATCTGGACAAGGATACTGTTGTTATCGCA
gi|12 : GATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|13 : CGATATCTGATATCCAG--------ATATCCGCACAAGGATATTATTGTTAT
gi|14 : TCGATATCTGATATCAAA--------ATATCCGCACAATGATACCATTGTTGTCGggt
gi|15 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|16 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|17 : TTTGATATCTGATATCAAG--------ATATCCGCACAAGGATACTTTTGTT
gi|18 : ATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|19 : ATATCCAG--------ATATCCGCACAAGGATACTATTGTTATTGCA
gi|2 : TTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTA-TTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCTGATATCTAG--------ATATCCTCACAAGGATTCTATTGTTATCGC
gi|20 : acacgttttcaagttattata--------ATATCCGCACAAGAATACTATTGTAATCGCA
gi|3 : CGATATCTGATATCCAGATATCCACATATCCACACAAGGATACTATTGTTATCACAc
gi|4 : TTCGATATCTGATATCCAG--------ATATCCACACAAGGATACTATTGTTATCGCA
gi|5 : TTCAATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATGGCA
gi|6 : TTCAATATCTGATATCCAA--------ATATTCGCACAAGGATACTATTGTTATCGCA
gi|7 : TTCTATATCTGATATCCAG--------ATATCTGCACAAGGATATTATTGTTATCGCA
gi|8 : TCGATATCTGATATCCAG--------ATATCTGCACAAGGATACTATTGTTATCACA
gi|9 : TCGATATCTGATATCCAG--------ATATCCGCACAAGGATTCTATTGTTATTGCA
blockSeqs : A T G T C T A C T . T ATATCCAC
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
Alignments
lowQualScore : 1 33 2222
lowQualScore : 1 1 5 1 1 00 1 1 1 4444 1 77777777
lowQualScore : . . . . . .. . . . .... . ........
lowQualScore : 0 0 0 0 0 55 0 0 0 5555 0 22222222
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
Reference ( family-1039 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGANTNGTTAAAAAGACATGACCGCCACAGTGAGGNGNTAGTTTACTTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCCGATTTCGATGTAATTTCACTNACATTTACCGTGGGTGAACNTCTACCAAGTTTGTTCCAGCCACTGCGATTCGCCGGAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTNATGTGGATATATTTATAGTGAAAACNTTCTTTCGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|1 : CTTCTCCTCTGAAACCACGGGGCTAATTTTGATATAACTTCACAGAATTTTTCCTTGGGTGACCCTCTACCAAGTTTGTTCAAGCTATCTTGATTCGTCAAAAAACATGGCCATCAGGTGGCAGGGCAAGTTTAATTAGTAAAATCTTCTTGTTAGAAACTACTGGCTCGATTTTAAAATAATTTCACAGAAATGTTCCTTGGAGGACCCTTCACCAAGTTTGTTCAAACCATAGTTATTCGTCAAAAAACATGGCAGCCAGAGAGTGGGGTTAGTTTACTAAATAAGCTACAGTAAAAACTTAAAAAATCTTCTTGTCAGAAACCAATGGATTGATTTTAAAACAATTTAGCAGAAATGTTCCTTGGGTAACCCTTTACCAAGTTTGTTCAAGCCGTTGTGATTGGTTAAAAA-ACATGACTGCCACAGTGAGGAGATAGTTTAC-TATATAGGCAACTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGATCCGATTTCGATGTAATTTCACTTACATTTACCATGGGTGAACATCTACCAAGTTTGTTCCAGCCATTGCGATTCGCCGAAAAACATAGTTGCCAGGAGGGGAGGCTGGTTTTCTTGATATGGATATATTTATAGTAAAAACATTCTTTTGATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|10 : gtttgtccttccaacattttcgcatcctgtcttttcatacatggaagaattttaaaataacatgtcacaaataatcaccatgctgagactacaagttatatgcagatccaaggtcaagttctcaggtgaagcggggtcatagagcaatggataaagtgttgactgctcacaccagaggttgtgggtttgatcttcagctcgatccaatgcttcttaaaaaaatctcaactaagtattggttctacccagtaacctgactcgggagtggttcatgtaatcgtgcaattaagctaagttagtatgtaaaaaagaaatggggtcatatttatgaaatcatataaaaaaagtaaaatgtatcttttatagtcacaaactttttagctcacctgtgataaaggctaacaggtgagcttttgtgatcgactggtgtctgtcgtccatcgttaaattttagcttttaacaaCGATAGCTGCTATCCAG--------ATATCCGTACAAGGGTACTATTGTTATCGCA
gi|11 : CGATATCTGATATCCAG--------ATATCTGGACAAGGATACTGTTGTTATCGCA
gi|12 : GATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|13 : CGATATCTGATATCCAG--------ATATCCGCACAAGGATATTATTGTTAT
gi|14 : TCGATATCTGATATCAAA--------ATATCCGCACAATGATACCATTGTTGTCGggt
gi|15 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|16 : ATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|17 : TTTGATATCTGATATCAAG--------ATATCCGCACAAGGATACTTTTGTT
gi|18 : ATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATCGCA
gi|19 : ATATCCAG--------ATATCCGCACAAGGATACTATTGTTATTGCA
gi|2 : TTGTGAATTGTTAAAAAGACATGACCGCCACAGTGAGGTGCTAGTTTA-TTATATAGGCAGCTATAGTAAAAACTTCAAAAGCCTTCTTGTCAGAATCTACTGACCTGATTTCGATGTAATTTCACTAACATTTACCGTGGGTGAACCTCTACCAAGTTTGTTCCAGTCACTGTGATTCGTCGGAAAACATAGTTGCCAGGAAGGGAAGCTGGTTTTCTTTATGTGGATA----TATAGTGAAAACTTTCTTTCGATATCTGATATCTAG--------ATATCCTCACAAGGATTCTATTGTTATCGC
gi|20 : acacgttttcaagttattata--------ATATCCGCACAAGAATACTATTGTAATCGCA
gi|3 : CGATATCTGATATCCAGATATCCACATATCCACACAAGGATACTATTGTTATCACAc
gi|4 : TTCGATATCTGATATCCAG--------ATATCCACACAAGGATACTATTGTTATCGCA
gi|5 : TTCAATATCTGATATCCAG--------ATATCCGCACAAGGATACTATTGTTATGGCA
gi|6 : TTCAATATCTGATATCCAA--------ATATTCGCACAAGGATACTATTGTTATCGCA
gi|7 : TTCTATATCTGATATCCAG--------ATATCTGCACAAGGATATTATTGTTATCGCA
gi|8 : TCGATATCTGATATCCAG--------ATATCTGCACAAGGATACTATTGTTATCACA
gi|9 : TCGATATCTGATATCCAG--------ATATCCGCACAAGGATTCTATTGTTATTGCA