lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 66666666666666666666666666666666 1111 2222 1 1 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1111 22 11 11 3333 111 3333 111 2222222222 11 111 111 999999999999999999999999999999999999999 111 11111 1111111 11 11111 1111 11111111111 2222222222222222 4444444444444444444444
lowQualScore : 111 11111111111111111111111111111111 4444 0000 8 7 5 4 5 6 0 77 2 22 111 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 6 77 3333 77 77 1 11 44 1 5555 5 0 000 7777 1111 333 4444444444 6 00 1 99 6 555 000 666666666666666666666666666666666666666 4 4 000 33 7777 4 22 22222 2 22 9999999 2 11 22222 0000 2 33 44444444444 33 333 4 2 8 3 8 9999999999999999 333 4 5555555555555555555555 2
lowQualScore : ... ................................ .... .... . . . . . . . .. . .. ... . ............................................................................................ .. . .. .... .. .. . .. .. . .... . . ... .... .... ... .......... . .. . .. . ... ... ....................................... . . ... .. .... . .. ..... . .. ....... . .. ..... .... . .. ........... .. ... . . . . . ................ ... . ...................... .
lowQualScore : 777 88888888888888888888888888888888 2222 0000 8 0 0 0 0 8 5 99 2 99 000 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 7 99 3333 00 99 7 33 44 4 4444 4 9 000 6666 6666 333 6666666666 7 33 7 22 7 222 000 777777777777777777777777777777777777777 1 0 888 44 2222 3 99 22222 2 77 6666666 2 22 99999 3333 2 22 66666666666 11 999 4 2 9 4 9 8888888888888888 777 7 8888888888888888888888 5
consensus : TTTATCACATA---AT-----NTA-----C-----A------G-----GAGTGTAATAAAC----CCAT--GACATATTTTTNATATTAACCTAGTGTAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G--TA--------------C-----------------TTTCC---G-ACT----TGCCCGAATATAT--AAATGAC---GTCGATTTGTCAT--GGT-NAAATGACGTTATTTTGAGATGTTACGTCA---TACGA-TGACNNACGGAAACTAATATGCC-GATTTT-TTC-TCGTTCCTTAT--AGAGGTGATCTGTTAAATAAATG---GTAAA--------CG-A---T----------T----TTCCC--GAGTTATGTGA-TAAAACG-A--ATCTTACATTNG-TGCTCATTTATTATTGAA--TTTATTAAACN--NG-T-TGGC------AAAA-ATN-ATAT----NATGCTCGGCA-GA--GCCT----CG-----C--A---T-AATA-T-ATTTTTNCCAA-----CTC---G----TTTA---ATAAATTCAATAAT-AAA---TGAGCACTC--A------T-GTAAGATCCTCTAT
Reference ( gi|4 ) : TTTATCACATA---AT-----ATA-----C-----A------G-----GAGTGTAATAAAC----CCGT--GACATATTTTTGATTTTAACCGAGTGCAATATCACT-TCAGATTCATCGCT-TGGTGTTTTCAGTATAACTCGTCT---------------C------------TG-----G--TA--------------C-----------------TTTCT---A-ATG----TGCCTAAATAAAT--AAATGAT---GTTGAACTGTCAT--GGT-TAAATGACATTATATCCAGATGTTACATCA---TATGA-TGACTTATGGAAGCAAATATGCCAGATTTT-TGC-TCGTTCCTTAT--AGAAGTGATCTGTTTAATAAATG---GTAAA--------C------T----------T----TTTTT--AAATTATGTGA-TAAAACA-A--ATCTTACATTCA-TGCTCATTCATTATTGAA--TTTATTAAACT--TG-T-TGGT------AAAA-ATA-ATAT----AATACTTGGCA-GA--GCCT----TG-----C--A---T-AATA-T-ATTTTTTCCAA-----TTC---A----TTTA---ATAAATTCAATAAT-AAT---TAGACATTT--G------T-GTAAGATCCTCTAT
gi|2 : TTTATCAAATA---AT-----TTA-----CTGCATA------G-----GAGTGTAATAAATAAATCCAT--GCCATATTTTT-ACATTAACCCAGTGTAATATCACC-ACAGAATCCTCACT-TGGCATTTTCCGTATTACTCGGCT---------------T------------TC-----G--TA--------------CGTAAAATACCGAAGCAGTTTCC---G-ACT----TTCCTGAATATAT--AAATGCC---GTAGATTTGTCTT--GGT-AAAATGACGTT-T-TTAAGACGTTACGTCA---TACTC-CGACAGACGCAAACTAATATGTCGGCTTTA-TTC-TCGTTACTCAG--AGAGGTGTAGTGTTAAATAAACG---GTAAA--------T------T----------TACCATTTTCCCGAGTTATGTGG-TAAAACG-A--ATCTTACATTTG-TGCACATGCATTATTGAA--TTTATTAAACTCCTG-T---GT------AAAA-ACG-ATAC----AATGCACGGC---A--GTCT----CG-----C--A---T-AATA-T-A-ACTTGCCAA-----CTC---G----TTTA---ATAAATTCAATAATGAAT---GAG-CACTC--A------A-TTAAGAT
gi|15 : atataTTTATCACCTA---AT-----TTA-----C-----A------GTGCAAGAGTGTAATAAAC----CCAT--TACATATCTTTCATtttttt
gi|1 : aTTCTTACATATTCAT-----ATA-----T-----ATTTCATG-----TAGTGTAATAAAC----CCAT--GGCATATCTTTTATATCAACCTAGTGTGATATCACT-ACAGATATATCGCT-AGGTGTTCCTA-TATTCCTCGGCT---------------CATA---------TGACT--G--AA--------------C-----------------TTT---------------GCCAGAACATAT--AAGTGAA---GTTGATTTGTCAT--G------------TTATTTTTAGATAAAACATCAACCTATGAATGAC----AGAAACTAATGTGT--GATTTT-TTCCTTGGTCCTTAT--ACAGGTGATCTGAAAAATAAATG---GTAAA--------TGCACCAT----------T----TTCCT--GAGTTATGTGA-TAAAAAG-A--ATCTTATTATCA-TGTTCATCTATTAATTAA--TTTATTAAATT--TG-T-TGGC------AAAA-ATG-AT-C----GATGCTCCGTA-GA--ACCT----CC-----C--A---T-AACA-T-TTTTTTGCCAA-----CTC---A----TTTA---ATGAATTCAATAAT-AAA---CAAGCACTC--A------T-GTAAGATCCTCTATatgactgatgggaactaatatacatctactttatttgttcttgttcatt
gi|8 : TTATCACATA---AT-----CTATGGCGC-----A------G-----GAGTGTAATAAAC----CCAT--GACATATTTTTGATATTAACCTAGTGTAATATCACT-TCAGGTTCATTGC--------TTTCAG---------------------------------------------------A--------------C-----------------TT----------------GCCTGATTACAT--AAATGAC---ATCGATTTGTCAT--GGT-TAAATGACGTTATTTTGAGACGTTACGTCA---TACGA-TAACCTaaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|3 : ATTGCATA---ATCA---GTG-----C-----A------G-----GAATGTAATAAAC----CCCTT-AACATATTTTTCATATTAACCTAGTGTAATATCACT-TCTGATTCATAGCTATGTTTTTTTCCATATAACTCAGCT---------------C------------TA-----G--TA--------------CGAAAAAAGTAC------TTTCC---A-ACT----TGCCCAAATATATCAAAATGATAATGTT----TGTCAT--GAT-TAAATGA-------------TGT-----CA---TATGA-TGAC----AGAAAATAATATGCCTGATTTT-TTC-TTGTTCTTTGT--TGAGGTGATCTGTTAAATAAATG---GTAAATGTAATCCC------C----------C----CCCCC--CAGTTATGGGA-TGAAACA-A---TCTTCCATTCA-TGCTCATTTATTACTGAA--TTTATTAAACT--CA-T-TAGG------AAAA-ATG-ATAT----CATGCTCAGCA-GA--GCCT----TG-----G--A-----AATT-T-G-TTTCTCCAA-----CTT---G----TTTA---ATAAATTCAATGATGAATTAATAAATACTC--A------T-TTCACATCCTCTATtcaaattcactgaaatt
gi|6 : taTTACATA---ACTTTTGATG-----C-----A------G-----AAGTGTAATAAAC----CT-TAAGACTTATTTT-GTTATTAACCTTGTGTAATATCACAACCTG--TCATTGCT-CAGCATTTTTTGTATAACTAGGCT---------------C------------TT-----G--TATGTAAAATACTAAGC-----------------TTTTTTTCG-ATT----TGTCAAAATATAA--AAATGAC---ATTGA--TATCATATGGT-AAAATGAAGTTATTTTACGATGTAACATCA---TACAA-TGAAGGGCGGAAATTAATATGCC----------C-TCATT--TT-T--AGA--TAATCTA---AACAGATAACTGTAAA--------T------TTAAGGTACAAT----TTCCT--GAATTATGTGATTAAAAC-----ATCTTGCATTCA-TGCTCATTTATTTTTTAA--TGTGTGA------TG-T-----------------TA-ATGT----GAGTCTTAATA-GA--GCCT----CG-----C--A---T-GGCA-T-AATTTTGCCGACTTGTTTT---T----TTTA---ATAAGTTAATTAA
gi|9 : ttATATTTTTGATATTGATGTAGTGTAATATCATT-TCCGATTCATCCCT-CGGTGTTTTCCATAGAACTTGGCTGTTGTGCGTTATGTGC------------TG-----AACTA--------------C-----------------TATCT---G-GCT----TGCCCAAATATAG--AAATGAT---GTCGATTTGTTAT--GATAAAAATGACGTTATTTTGAGATGTTAAATTA---TACAT-TGACTTACAGAAGcga
gi|5 : TATTTTTTATATTAGCCTGGTGTAATATCACT-TTTGATTAAATGCT-CGGTGTTTTCTGTAAATCTTGGCT---------------CACGTACAAAAATTG-----G--CA--------------CAG---------------TACTT---ATATGGACTTGTCCGAATATAT--GAATGAC---ATTGAGTTGTCAT--AGT-TAAATAACTTTATTTTGAGATGTTACGTCA---TAAAA-TGACTCACGACAACAAATATGCCCAATTTTGTTT-TCGTTC-TTATTTAGAAG--ATCTGTTAAATATATG---GTAAA--------TGTAAA-C----------T----TTTCT--GAGTTATGTGA-TAAAATG-A--ATCTTACATTGG-AACTCATTTATTATTGCA--TTTATCAAAGT--CA-T-TGGG------AAAC-ATG-ATAT----TATGCTCAGCA-GT--GCTT----CG-----C--A---T-AATA-T-GTGTTTTCCAA-----CTC---G----TTTA---ATAAATTCAATAAT-AAA---TAAGCATTC--A------T-GTAAGATTCTGTATtg
gi|14 : ATATTAATCTAGTGCAATATGACT-TCCGAATCCTCACT-TGGCATTTTCCTTATAACTCTCCT---------------CCCACCAAAGAAATGCCAAAG--TA--------------C-----------------TTTCT---G-AGT----TGCCCGAATAga
gi|7 : tC-TTGATTCTTAC--AGAAGTGATCTTTTTAATAACTG---GTAAA--------CGTACCAT----------T----TACCT--GAGTTATGTTA-TAAAAAG-A--ATCTTACATTTG-AGCTCATTTATTATTGAA--TTTATTAAACT--TC-C-TGG-------AAAT-TTT-ATAT----AATGCTGGGTG-GA--GCCT----CA-----C--A---T-AATA-T-ATTTTTACCAA-----CTC---G----TTTA---ATAAATCCGAAAAT-AAA---TGAGCACTC--A------T-GTAAGATTCTCTAta
gi|10 : tAAAAAATG----TAAA--------C------T----------T----TTCCT--CAGTTATGTGA-TAAAACG-A--ATCTTACATTCG-TTCTCATT-ATTATTGAA--TGTATTAAACT--CGTT-TGG--------GGA-ATT-ATAT----AATGCTCGGCA-GA--GCCT----CGCATATC--A---T-AATA-A-ATTGATAGCGA-----CTCTAGA----TTTACTGATAAATTATATAA--AAT---
gi|11 : ggtatattgac--AAGTTAGTTGA-TCAAAAT-A--ATCTTGCATTCA-TACTCATTTTTTATAAGA--TTTATAAAACT--TG-----GA------AAAA-ATC-ATAT----TAAACTCAGTAAGA--GTCT----CC-----T--A---T-AATA-T-ATTTTTGTCAA-----CTC---A----TTTA---ATAAATTCAATATT-AAA---TAAACACTC--A------T-GTAAGATCCatgttttata
gi|19 : ccTATATGA-TATAACG-AGGATCTTACATGAG-TATTTATTTATTATTGAG--TTTATCAAcata
gi|13 : TGTGA-TAAATAG-G--GTCTTACATTTA-T-------CACTA---AA--TTCATTGAAAT--TG-T-TGGC------AAAA-ATG-ATAT----TATTCTTGACA-AA--ACCA----CA-----C--A---T-AATA---A--------AA-----TTC----------------------CAATAAT-AAA---TGAGCATTT--A------T-TCAAGATCCTCTATcata
gi|2 : AAAAA-A--ATCTTA-ATTGAGTGCTCATTCATTATTGAA--TTTATTAAACG--AG-T-TGGC--------AA-GTT-ATAT----TATGC--G--A-GACTGCCG----TG-----C--A---T-TGTA-T-CGTTTTTACA--------C---AGGAGTTTA---ATAAATTCAATAAT----------GCATGT--GCACAAAT-GTAAGATTC
gi|5 : atatatttatcaaataatttactgcataggagtgtaataaataaatccatgccatatttttacattaacccagtgtaatatcaccacagaatcctcacttggcattttccgtattactcggctttcgtacgtaaaataccgaagcagtttccgactttcctgaatatataaatgccgtagatttgtcttggtaaaatgacgtttttaagacgttacgtcatactccgacagacgcaaactaatatgtcggctttattctcgttactcagagaggtgtagtgttaaataaacggtaaatttaccattttcccgagttatgtggtaaaacACAGA--ATCTTACATGAA-TGCTTATTTATTATTGAA--TTTATTAAACG--AG-T-TGG--------AAA-ACACATAT----TATGCGAAGCA-CT--GCTG----AG-----C--A---T-AATA-TCATGTTTCCCAA-----TGA---C----TTTG---ATAAATGCAATAAT-AAA---T-GA-GTTCCAA------T-GTAAGATTC
gi|7 : tattttttatattagcctggtgtaatatcacttttgattaaatgctcggtgttttctgtaaatcttggctcacgtacaaaaattggcacagtacttatatggacttgtccgaatatatgaatgacattgagttgtcatagttaaataactttattttgagatgttacgtcataaaatgactcacgacaacaaatatgcccaattttgttttcgttcttatttagaagatctgttaaatatatggtaaatgtaaacttttctgagttatgtgataaaat-A--ATCTTACATGAG-TGCTCATTTATTTTCGGA--TTTATTAAACG--AG-T-TGGT------AAAA-AT--ATAT----TATGTGAGGCT-CC--ACCC----AG-----C--A---T-TATA-T-AAAATTTCCAG-----GAA---G----TTTA---ATAAATTCAATAAT-AAA---TGAGCTCAA--A------T-GTAAGATTCTTTatga
gi|1 : tcttgattcttacagaagtgatctttttaataactggtaaacgtaccatttacctgagttatgttataa--ATCTTACATGAG-TGCTTGTTTATTATTGAA--TTCATTAAATG--AG-T-TGGC------AAAA-A-A-ATGT------TA--TGGGA-GG--TTCTACGGAG-----C--A---TCGAT--C-ATTTTTGCCAA-----CAA---A----TTTA---ATAAATTAATTAAT-AGA---TGAACA--T--GA-----TAATAAGATTCTTTctcta
gi|11 : ttcttacatattcatatatatttcatgtagtgtaataaacccatggcatatcttttatatcaacctagtgtgatatcactacagatatatcgctaggtgttcctatattcctcggctcatatgactgaactttgccagaacatataagtgaagttgatttgtcatgttatttttagataaaacatcaacctatgaatgacagaaactaatgtgtgattttttccttggtccttatacaggtgatctgaaaaataaatggtaaatgcaccattttcctgagttatgtgataa--ATCTTACATGAG-TGTTTATTTAATATTGAA--TTTATTAAATG--AG-T-TGAC------AAAA-AT--ATAT----TATA---GG-A-GA--CTCT----TA-----CTGAGTTT-AATA-TGATTTTTTCCAA-----------G----TTTT---ATAAATCTTATAAA-AAA---TGAGTATGA--A------T-GCAAGATcctctataaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|13 : ccaagttagttgatcaaaata--ATCTTGAATAAA-TGCTCATTTATTATTGGAATTTTATTA------TG-TGTGGTTTTGTCAAGA-ATA-ATAT----CATTTTTGCCA-cccata
gi|12 : tgtgataaatagggtcttacatttatcactaaattcattgaaattgtTCTTAAATGAG-TGCTCATTTATTATTGAA--TTTATTATACA--AG-T-TGGC------AAAATAT--AT-T----AATACGAGGTT-CT--GCCT----AG-----C--A---T-TATATT-GTTTTTGCCG--------C---A----TTTA---ATAAAcctctat
gi|3 : aaatagtatatgtaccattttcctgagttatgtgataacattttATTTA-T--TAATTCATCATTGAA--TTTATTAAACA--AG-T-TGG-------AGAA-ACA-A-ATTTCCAAGGCTCTGCT-GA--GC----------------A---T-GATA-TCATTTTTCCTAA-----TGA---G----TTTA---ATAAATTCAGTAAT-AAA---TGAGCATGA--A------T-GGAAGATgcctctatgt
gi|12 : taattgcataatcagtgcaggaatgtaataaaccccttaacatatttttcatattaacctagtgtaatatcacttctgattcatagctatgtttttttccatataactcagctctagtacgaaaaaagtactttccaacttgcccaaatatatcaaaatgataatgtttgtcatgattaaatgatgtcatatgatgacagaaaataatatgcctgattttttcttgttctttgttgaggtgatctgttaaataaatggtaaatgtaatcccccccccccagttatgggatgaaaca--TTTATTAAA----TG-C--GGC------AAAA-ACA-ATAT----AATGCTAGGCA-GA--ACCT----CG-----T--A---TTAATA-T-ATTTTG-CCAA-----CTT---G----TATA---ATAAATTCAATAAT-AAA---TGAGCACTC--A------T-TTAAGAGCCTCTATactcatttcacatcctctat
gi|13 : aaatagtatatgtaccattttcctgagttatgtgataacatttt--A---T-AATA-TCATTTTTGCCAA-------C---AAT--TTCA---ATGAATTTAGTGAT-AA---------------A------T-GTAAGACCCTgt
gi|19 : tgtgataaatTTG---ATAAACTCAATAAT-AAA---TAAATACTC--A------T-GTAAGATCCTCtcttgacaaaaccacacataataaaattccaataataaatgagcatttattcaagatcctctat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TGTCATTGGGCAAGACATGGCATAAACACGTGCTTATTACTAATTCAACCAGGTAAATAAAGGATAATTTG
Unaligned ( gi|17 ): CTGACGTTACTTTGTCTTGTTTATAAAATTTAAATTCAACGTAAACCAATTTTGATACAGATCGT
Unaligned ( gi|18 ): ATAACCAATGACGTATTGTGGACATTTACTAAAATACAATCACATGTTTCCAAAGGCTGTATT
Unaligned ( gi|20 ): TCAATAATAAACGAACACTCATGCAAGGTTCTCTATA
Unaligned ( gi|21 ): TCTGAGATGTAAAATTGAAAGAAAAGAAATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333 11111 1111 11111 6666666666666666666666666666666666666666666666666666666666666666 111 22 1 11111 5555555555 1111 1 111111
lowQualScore : 5 888 55555555555555555 44444 5 2222 5 5 5 00000 4 1 77 22 0 8888888888888888888888888888888888888888888888888888888888888888 22 4 66 1 000 3 5 0 77 0 3 0 1 2 77 11 3 5 66 0 1 44444 66 9999 4444444444 1 8888 3 66666 66 0 1 1111 1 1 1 3 99999 3 5 000000 3 6666
lowQualScore : . ... ................. ..... . .... . . . ..... . . .. .. . ................................................................ .. . .. . ... . . . .. . . . . . .. .. . . .. . . ..... .. .... .......... . .... . ..... .. . . .... . . . . ..... . . ...... . ....
lowQualScore : 7 999 11111111111111111 33333 7 1111 7 7 3 00000 0 0 11 66 9 7777777777777777777777777777777777777777777777777777777777777777 88 4 11 9 222 1 0 2 88 1 4 5 1 2 66 00 3 7 00 1 7 33333 99 4444 4444444444 2 5555 3 44444 22 2 0 5555 1 0 0 6 11111 6 8 333333 1 5555
consensus : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTNACGGAAACTAATATGCC-GATTTT-TTC-TCGTTCCTTATAGAGGTGATCT-----GTTAA--ATAAAT----GGTAAA----CGTA--ATTTTCCCG----AGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
Reference ( family-307 ) : TTTATCACATA-ATN--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACNNACGGAAACTAATATGCC-GATTTT-TTC-TCGTTCCTTATAGAGGTGATCT-----GTTAA--ATAAAT----GGTAAA----CG----ATTTTCCCG----AGTTATGTGA-TAAAACGA--ATCTTACATTNGTGCTCATTTATTATTGAATTTATTAAACNNG-TTGGCAAAAATNATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTNCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
gi|1 : TCATATATATT--T-----------C-----AT-----GTAGTGTAATAAAC----CC-AT-GGCATATCTTTTATATCAACCTAGTG-----TGATATCACT-ACAGATATATCGCT-AGGTGTTC-CTATATTCCTCGGCT---------------CATA---------TG------------AC-----------------T-----G-AACTTTGCCAGAACATAT--AAGTGAAGTTGAT-TTGTCATG------------TTATTTTTAGATAAAACATCAACCTATGAATGACAGAAACTAATGTGT--GATTTT-TTCCTTGGTCCTTATACAGGTGATCT-----GAAAA--ATAAAT----GGTAAA----TGCACCATTTTCCTG----AGTTATGTGA-TAAAAAGA--ATCTTATTATCATGTTCATCTATTAATTAATTTATTAAATTTG-TTGGCAAAAATGAT-CGATGCTCCGTA-GAACCTCC-----CAT-AACATTTTTTTGCCAACTCA-----TTTAATGAATT-CAAT----AATAAACAAGCACTCATGTAAGATCCTCTAT
gi|10 : ttcttacatatAA--A-AAAT----G-TAAA----C------TTTTCCTC----AGTTATGTGA-TAAAACGA--ATCTTACATTCGTTCTCA-TTATTATTGAATGTATTAAACTCGTTTGG--GGAATTATATAATGCTCGGCA-GAGCCTCGCATATCAT-AATAAATTGATAGCGACTC-----------TAGATT-TACT----GATAAATaaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|11 : ggtatattgacCCA----AGTTAGTTGA-TCAAAATA--ATCTTGCATTCATACTCATTTTTTATAAGATTTATAAAAC----TTGGAAAAAATCATATTAAACTCAGTAAGAGTCTCC-----TAT-AATATATTTTTGTCAACTCA-----TTTAATAAATT-CAAT----ATTAAATAAACACTCATGTAAGATCCtatataaaatatgttttata
gi|12 : AAAT----AGTATA----TGTACCATTTTCCTG----AGTTATGTGA-TAA-----------------------CATTT-----T---TTTATTAAATGCG----GCAAAAACAATATAATGCTAGGCA-GAACCTCG-----TATTAATATATTTT-GCCAACTTG-----TATAATAAATT-CAAT----AATAAATGAGCACTCATTTAAGAGCCTCTATcata
gi|13 : TGTGA-TAAATAGG--GTCTTACATT----------TATCACTAAATTCATTGAAATTG-TTGGCAAAAATGATATTATTCTTGACA-AAACCACA-----CAT-AATA---------------------------AAATTCCAAT----AATAAATGAGCATTTATTCAAGATCCTCTATgt
gi|14 : ATATTAATCTAGTG-----CAATATGACT-TCCGAATCCTCACT-TGGCATTTTCCTTATAACTCTCCT---------------CCCACCAAAGAAATGCCAAAG-----TAC-----------------TT-TCTG-A--GTTGCCCGAATATA
gi|15 : tTTTATCACCTA-ATT--T-----A-----C-----AGTGCAAG-AGTGTAATAAAC----CC-AT-TACATATCTTTCATATGA--CTGATGGGAACTAATAT-ACA-TCTACTTTAT
gi|19 : aTTGATAAACT-CAAT----AATAAATAAATACTCATGTAAGATCCTCttgttcttgttcatt
gi|19 : TATATGA-TATAACGAGGATCTTACATGAGTATTTATTTATTATTGAGTTTATCAAgttatatcatatacata
gi|2 : TTTATCAAATA-ATT--T-----A-----CTGCATAG-----G-AGTGTAATAAATAAATCC-AT-GCCATATTTTT-ACATTAACCCAGTG-----TAATATCACC-ACAGAATCCTCACT-TGGCATTTTCCGTATTACTCGGCT---------------T------------TC-----G-----TACGTAAAATACCGAAGCAGTT-TCCG-A--CTTTCCTGAATATAT--AAATGCCGTAGAT-TTGTCTTGGT-AAAATGACGTT--TTTAAGACGTTACGTCATACTCCGACAGACGCAAACTAATATGTC-GGCTTTATTC-TCGTTACTCAGAGAGGTGTAGT-----GTTAA--ATAAAC----GGTAAATTTACC----ATTTTCCCG----AGTTATGTGG-TAAAACGA--ATCTTACATTTGTGCACATGCATTATTGAATTTATTAAACTCC-TGTGTAAAAACGATACAATGCACGGC---AGTCTCG-----CAT-AATATA-ACTTGCCAACTCG-----TTTAATAAATT-CAAT----AATGAATGAGCACTCAATTAAGATcata
gi|20 : atataT-CAAT----AATAAACGAACACTCATGCAAGGTTCTCTATtttttt
gi|3 : ATTGCATA-ATCAGT-----G-----C-----AG-----G-AATGTAATAAAC----CC-CTTAACATATTTTTCATATTAACCTAGTG-----TAATATCACT-TCTGATTCATAGCTATGTTTTTTTCCATATAACTCAGCT---------------C------------TA-----G-----TACGAAAAAAGTAC------TT-TCCA-A--CTTGCCCAAATATATCAAAATGATAATG-T-TTGTCATGAT-TAAATGATGT------------------CATATGATGACA----GAAAATAATATGCCTGATTTT-TTC-TTGTTCTTTGTTGAGGTGATCT-----GTTAA--ATAAAT----GGTAAA----TGTA--ATCCCCCCCCCCCAGTTATGGGA-TGAAAC-A--ATCTTCCATTCATGCTCATTTATTACTGAATTTATTAAACTCA-TTAGGAAAAATGATATCATGCTCAGCA-GAGCCTTG-----GA--AATTTGTTTCT-CCAACTTG-----TTTAATAAATT-CAATGATGAATTAATAAATACTCATTTCACATCCTCTATa
gi|4 : taTTTATCACATA-ATA--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-GT-GACATATTTTTGATTTTAACCGAGTG-----CAATATCACT-TCAGATTCATCGCT-TGGTGTTTTCAGTATAACTCGTCT---------------C------------TG-----G-----TAC-----------------TT-TCTA-A--TGTGCCTAAATAAAT--AAATGATGTTGAA-CTGTCATGGT-TAAATGACATTATATCCAGATGTTACATCATATGATGACTTATGGAAGCAAATATGCCAGATTTT-TGC-TCGTTCCTTATAGAAGTGATCT-----GTTTA--ATAAAT----GGTAAA----C------TTTTTTTA----AATTATGTGA-TAAAACAA--ATCTTACATTCATGCTCATTCATTATTGAATTTATTAAACTTG-TTGGTAAAAATAATATAATACTTGGCA-GAGCCTTG-----CAT-AATATATTTTTTCCAATTCA-----TTTAATAAATT-CAAT----AATAATTAGACATTTGTGTAAGATCCTCTAT
gi|5 : TATTTTTTATATTAGCCTGGTG-----TAATATCACT-TTTGATTAAATGCT-CGGTGTTTTCTGTAAATCTTGGCT---------------CACGTACAAAAATTG-----GCACAGTAC-----------------TTATATGGA--CTTGTCCGAATATAT--GAATGACATTGAG-TTGTCATAGT-TAAATAACTTTATTTTGAGATGTTACGTCATAAAATGACTCACGACAACAAATATGCCCAATTTTGTTT-TCGTTC-TTATTTAGAAGATCT-----GTTAA--ATATAT----GGTAAA----TGTAA-ACTTTTCTG----AGTTATGTGA-TAAAATGA--ATCTTACATTGGAACTCATTTATTATTGCATTTATCAAAGTCA-TTGGGAAACATGATATTATGCTCAGCA-GTGCTTCG-----CAT-AATATGTGTTTTCCAACTCG-----TTTAATAAATT-CAAT----AATAAATAAGCATTCATGTAAGATTCTGTAT
gi|6 : TTACATA-ACT--TTTGATG-----C-----AG-----A-AGTGTAATAAAC----CTTAA-GACTTATTTTGT-TATTAACCTTGTG-----TAATATCACAACCTG--TCATTGCT-CAGCATTTTTTGTATAACTAGGCT---------------C------------TT-----G-----TATGTAAAATACTAAGCTTTTT-TTCG-A--TTTGTCAAAATATAA--AAATGACATTGATATCAT-ATGGT-AAAATGAAGTTATTTTACGATGTAACATCATACAATGAAGGGCGGAAATTAATATGCC----------C-TCATT--TT-TAGA--TAATCTAAACAGATAACTGTAAATTTAAGGT--A----CA----A-TTTCCTG----AATTATGTGATTAAAAC----ATCTTGCATTCATGCTCATTTATTTTTTAATGTGTGA----TG-T---------TAATGTGAGTCTTAATA-GAGCCTCG-----CAT-GGCATAATTTTGCCGACTTGTTTTTTTTAATAAGTT-AATT----AAga
gi|7 : ttTC-TTGATTCTTACAGAAGTGATCT-----TTTTA--ATAACT----GGTAAA----CGTACCATTTACCTG----AGTTATGTTA-TAAAAAGA--ATCTTACATTTGAGCTCATTTATTATTGAATTTATTAAACTTC-CTGG-AAATTTTATATAATGCTGGGTG-GAGCCTCA-----CAT-AATATATTTTTACCAACTCG-----TTTAATAAATC-CGAA----AATAAATGAGCACTCATGTAAGATTCTCTAcga
gi|8 : TTATCACATA-ATC--T-----ATGGCGC-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTGATATTAACCTAGTG-----TAATATCACT-TCAGGTTCATTGC--------TTTCAG----ACTTGCCT-------------------------------------------------------------------G-A--TT-------ACATA----AATGACATCGAT-TTGTCATGGT-TAAATGACGTTATTTTGAGACGTTACGTCATACGATAAC
gi|9 : ATATTTTTGATATTGATGTAGTG-----TAATATCATT-TCCGATTCATCCCT-CGGTGTTTTCCATAGAACTTGGCTGTTGTGCGTTATGTGC------------TG-----AAC---TAC-----------------TA-TCTG-G--CTTGCCCAAATATAG--AAATGATGTCGAT-TTGTTATGATAAAAATGACGTTATTTTGAGATGTTAAATTATACATTGACTTACAGAActtcaaattcactgaaatt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTCATTGGGCAAGACATGGCATAAACACGTGCTTATTACTAATTCAACCAGGTAAATAAAGGATAATTTG
Unaligned ( gi|17 ): CTGACGTTACTTTGTCTTGTTTATAAAATTTAAATTCAACGTAAACCAATTTTGATACAGATCGT
Unaligned ( gi|18 ): ATAACCAATGACGTATTGTGGACATTTACTAAAATACAATCACATGTTTCCAAAGGCTGTATT
Unaligned ( gi|21 ): TCTGAGATGTAAAATTGAAAGAAAAGAAATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333 11111 1111 11111 6666666666666666666666666666666666666666666666666666666666666666 111 222222222222222 33333333333333 111111
lowQualScore : 5 77 55555555555555555 44444 5 2222 5 5 5 00000 4 1 77 22 0 8888888888888888888888888888888888888888888888888888888888888888 22 4 66 1 000 3 5 0 77 0 3 0 1 55 66 999999999999999 5 55 0 1 777 55555555555555 1 8888 3 66666 33 0 1 555 0 5 1 3 99999 3 4 000000 3 6666
lowQualScore : . .. ................. ..... . .... . . . ..... . . .. .. . ................................................................ .. . .. . ... . . . .. . . . . .. .. ............... . .. . . ... .............. . .... . ..... .. . . ... . . . . ..... . . ...... . ....
lowQualScore : 7 99 11111111111111111 33333 7 1111 7 7 3 00000 0 0 11 66 9 7777777777777777777777777777777777777777777777777777777777777777 88 4 11 9 222 1 0 2 88 1 4 5 1 66 11 444444444444444 0 99 1 7 888 11111111111111 2 5555 3 44444 99 2 0 222 5 8 0 6 11111 6 3 333333 1 5555
consensus : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAACGTACCA--T----TTTCCCG----AGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
Reference ( family-307 ) : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTNACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAACGTA--A--T----TTTCCCG----AGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
gi|1 : TCATATATATT--T-----------C-----AT-----GTAGTGTAATAAAC----CC-AT-GGCATATCTTTTATATCAACCTAGTG-----TGATATCACT-ACAGATATATCGCT-AGGTGTTC-CTATATTCCTCGGCT---------------CATA---------TG------------AC-----------------T-----G-AACTTTGCCAGAACATAT--AAGTGAAGTTGAT-TTGTCATG------------TTATTTTTAGATAAAACATCAACCTATGAATGACAGAAACTAATGTGT----GATTTT-----TTCCTTGGTCCTTATACAGGTGATCTGAAAAATAAATG---GTAAATGCACCA--T----TTTCCTG----AGTTATGTGA-TAAAAAGA--ATCTTATTATCATGTTCATCTATTAATTAATTTATTAAATTTG-TTGGCAAAAATGAT-CGATGCTCCGTA-GAACCTCC-----CAT-AACATTTTTTTGCCAACTCA-----TTTAATGAATT-CAAT----AATAAACAAGCACTCATGTAAGATCCTCTAT
gi|10 : ttcttacatatAAA-AAATG----TAAAC--------T----TTTCCTC----AGTTATGTGA-TAAAACGA--ATCTTACATTCGTTCTCA-TTATTATTGAATGTATTAAACTCGTTTGGG--GAATTATATAATGCTCGGCA-GAGCCTCGCATATCAT-AATAAATTGATAGCGACTC-----------TAGATT-TACT----GATAAATaaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|11 : ggtatattgacCCA----AGTTAGTTGA-TCAAAATA--ATCTTGCATTCATACTCATTTTTTATAAGATTTATAAAACT----TGGAAAAAATCATATTAAACTCAGTAAGAGTCTCC-----TAT-AATATATTTTTGTCAACTCA-----TTTAATAAATT-CAAT----ATTAAATAAACACTCATGTAAGATCCtatataaaatatgttttata
gi|12 : AAATA---GTATATGTACCA--T----TTTCCTG----AGTTATGTGA-TAA-----------------------CATTT-----T---TTTATTAAATGCG----GCAAAAACAATATAATGCTAGGCA-GAACCTCG-----TATTAATATATTTT-GCCAACTTG-----TATAATAAATT-CAAT----AATAAATGAGCACTCATTTAAGAGCCTCTATcata
gi|13 : TGTGA-TAAATAGG--GTCTTACATT----------TATCACTAAATTCATTGAAATTG-TTGGCAAAAATGATATTATTCTTGACA-AAACCACA-----CAT-AATA---------------------------AAATTCCAAT----AATAAATGAGCATTTATTCAAGATCCTCTATgt
gi|14 : ATATTAATCTAGTG-----CAATATGACT-TCCGAATCCTCACT-TGGCATTTTCCTTATAACTCTCCT---------------CCCACCAAAGAAATGCCAAAG-----TAC-----------------TT-TCTG-A--GTTGCCCGAATATA
gi|15 : tTTTATCACCTA-ATT--T-----A-----C-----AGTGCAAG-AGTGTAATAAAC----CC-AT-TACATATCTTTCATATGA--CTGATGGGAACTAATAT-ACA-TCTACTTTAT
gi|15 : aTCATA---TGACTGATGGGAACTAATATACATC-TACTTTATTTGTTC-TTGTTCATTttgttcttgttcatt
gi|19 : atttatcacctaatttacagtgcaagagtgtaataaacccattacatatcttTTGATAAACT-CAAT----AATAAATAAATACTCATGTAAGATCCTC
gi|19 : TATATGA-TATAACGAGGATCTTACATGAGTATTTATTTATTATTGAGTTTATCAAgttatatcatatacata
gi|2 : TTTATCAAATA-ATT--T-----A-----CTGCATAG-----G-AGTGTAATAAATAAATCC-AT-GCCATATTTTT-ACATTAACCCAGTG-----TAATATCACC-ACAGAATCCTCACT-TGGCATTTTCCGTATTACTCGGCT---------------T------------TC-----G-----TACGTAAAATACCGAAGCAGTT-TCCG-A--CTTTCCTGAATATAT--AAATGCCGTAGAT-TTGTCTTGGT-AAAATGACGTT--TTTAAGACGTTACGTCATACTCCGACAGACGCAAACTAATATGT--C-GGCTTTA----TTC-TCGTTACTCAGAGAGGTGTAGTGTTAAATAAACG---GTAAATTTACCA--T----TTTCCCG----AGTTATGTGG-TAAAACGA--ATCTTACATTTGTGCACATGCATTATTGAATTTATTAAACTCC-TGTGTAAAAACGATACAATGCACGGC---AGTCTCG-----CAT-AATATA-ACTTGCCAACTCG-----TTTAATAAATT-CAAT----AATGAATGAGCACTCAATTAAGATcata
gi|20 : atataT-CAAT----AATAAACGAACACTCATGCAAGGTTCTCTATtttttt
gi|3 : ATTGCATA-ATCAGT-----G-----C-----AG-----G-AATGTAATAAAC----CC-CTTAACATATTTTTCATATTAACCTAGTG-----TAATATCACT-TCTGATTCATAGCTATGTTTTTTTCCATATAACTCAGCT---------------C------------TA-----G-----TACGAAAAAAGTAC------TT-TCCA-A--CTTGCCCAAATATATCAAAATGATAATG-T-TTGTCATGAT-TAAATGATGT------------------CATATGATGAC----AGAAAATAATATGC--CTGATTTT-----TTC-TTGTTCTTTGTTGAGGTGATCTGTTAAATAAATG---GTAAATGTA--A--T----CCCCCCCCCCCAGTTATGGGA-TGAAAC-A--ATCTTCCATTCATGCTCATTTATTACTGAATTTATTAAACTCA-TTAGGAAAAATGATATCATGCTCAGCA-GAGCCTTG-----GA--AATTTGTTTCT-CCAACTTG-----TTTAATAAATT-CAATGATGAATTAATAAATACTCATTTCACATCCTCTATa
gi|4 : taTTTATCACATA-ATA--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-GT-GACATATTTTTGATTTTAACCGAGTG-----CAATATCACT-TCAGATTCATCGCT-TGGTGTTTTCAGTATAACTCGTCT---------------C------------TG-----G-----TAC-----------------TT-TCTA-A--TGTGCCTAAATAAAT--AAATGATGTTGAA-CTGTCATGGT-TAAATGACATTATATCCAGATGTTACATCATATGATGACTTATGGAAGCAAATATGC--CAGATTTT-----TGC-TCGTTCCTTATAGAAGTGATCTGTTTAATAAATG---GTAAAC--------T----TTTTTTA----AATTATGTGA-TAAAACAA--ATCTTACATTCATGCTCATTCATTATTGAATTTATTAAACTTG-TTGGTAAAAATAATATAATACTTGGCA-GAGCCTTG-----CAT-AATATATTTTTTCCAATTCA-----TTTAATAAATT-CAAT----AATAATTAGACATTTGTGTAAGATCCTCTAT
gi|5 : TATTTTTTATATTAGCCTGGTG-----TAATATCACT-TTTGATTAAATGCT-CGGTGTTTTCTGTAAATCTTGGCT---------------CACGTACAAAAATTG-----GCACAGTAC-----------------TTATATGGA--CTTGTCCGAATATAT--GAATGACATTGAG-TTGTCATAGT-TAAATAACTTTATTTTGAGATGTTACGTCATAAAATGACTCACGACAACAAATATGC--CCAATTTTG----TTT-TCGTTC-TTATTTAGAAGATCTGTTAAATATATG---GTAAATGTA--AA-C----TTTTCTG----AGTTATGTGA-TAAAATGA--ATCTTACATTGGAACTCATTTATTATTGCATTTATCAAAGTCA-TTGGGAAACATGATATTATGCTCAGCA-GTGCTTCG-----CAT-AATATGTGTTTTCCAACTCG-----TTTAATAAATT-CAAT----AATAAATAAGCATTCATGTAAGATTCTGTAT
gi|6 : TTACATA-ACT--TTTGATG-----C-----AG-----A-AGTGTAATAAAC----CTTAA-GACTTATTTTGT-TATTAACCTTGTG-----TAATATCACAACCTG--TCATTGCT-CAGCATTTTTTGTATAACTAGGCT---------------C------------TT-----G-----TATGTAAAATACTAAGCTTTTT-TTCG-A--TTTGTCAAAATATAA--AAATGACATTGATATCAT-ATGGT-AAAATGAAGTTATTTTACGATGTAACATCATACAATGAAGGGCGGAAATTAATATGC--C--------------C-TCATT--TT-TAGA--TAATC---TAAACAGATAACTGTAAATTTA--AGGTACAATTTCCTG----AATTATGTGATTAAAAC----ATCTTGCATTCATGCTCATTTATTTTTTAATGTGTGA----TG-TT------AATG---TGAGTCTTAATA-GAGCCTCG-----CAT-GGCATAATTTTGCCGACTTGTTTTTTTTAATAAGTT-AATT----AAga
gi|7 : ttTC-TTGATTCTTACAGAAGTGATCTTTTTAATAACTG---GTAAACGTACCA--T----TTACCTG----AGTTATGTTA-TAAAAAGA--ATCTTACATTTGAGCTCATTTATTATTGAATTTATTAAACTTC-CTGG-AAATTTTATATAATGCTGGGTG-GAGCCTCA-----CAT-AATATATTTTTACCAACTCG-----TTTAATAAATC-CGAA----AATAAATGAGCACTCATGTAAGATTCTCTAcga
gi|8 : TTATCACATA-ATC--T-----ATGGCGC-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTGATATTAACCTAGTG-----TAATATCACT-TCAGGTTCATTGC--------TTTCAG----ACTTGCCT-------------------------------------------------------------------G-A--TT-------ACATA----AATGACATCGAT-TTGTCATGGT-TAAATGACGTTATTTTGAGACGTTACGTCATACGATAAC
gi|9 : ATATTTTTGATATTGATGTAGTG-----TAATATCATT-TCCGATTCATCCCT-CGGTGTTTTCCATAGAACTTGGCTGTTGTGCGTTATGTGC------------TG-----AAC---TAC-----------------TA-TCTG-G--CTTGCCCAAATATAG--AAATGATGTCGAT-TTGTTATGATAAAAATGACGTTATTTTGAGATGTTAAATTATACATTGACTTACAGAActtcaaattcactgaaatt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTCATTGGGCAAGACATGGCATAAACACGTGCTTATTACTAATTCAACCAGGTAAATAAAGGATAATTTG
Unaligned ( gi|17 ): CTGACGTTACTTTGTCTTGTTTATAAAATTTAAATTCAACGTAAACCAATTTTGATACAGATCGT
Unaligned ( gi|18 ): ATAACCAATGACGTATTGTGGACATTTACTAAAATACAATCACATGTTTCCAAAGGCTGTATT
Unaligned ( gi|21 ): TCTGAGATGTAAAATTGAAAGAAAAGAAATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333 11111 1111 11111 6666666666666666666666666666666666666666666666666666666666666666 111 222222222222222 1111111111111 111111
lowQualScore : 5 77 55555555555555555 44444 5 2222 5 5 5 00000 4 1 77 22 0 8888888888888888888888888888888888888888888888888888888888888888 22 4 66 1 000 3 5 0 77 0 3 0 1 55 55 999999999999999 5 55 0 1 777 8888888888888 1 3 66666 33 0 1 555 0 5 1 3 99999 3 4 000000 3 6666
lowQualScore : . .. ................. ..... . .... . . . ..... . . .. .. . ................................................................ .. . .. . ... . . . .. . . . . .. .. ............... . .. . . ... ............. . . ..... .. . . ... . . . . ..... . . ...... . ....
lowQualScore : 7 99 11111111111111111 33333 7 1111 7 7 3 00000 0 0 11 66 9 7777777777777777777777777777777777777777777777777777777777777777 88 4 11 9 222 1 0 2 88 1 4 5 1 66 99 444444444444444 0 99 1 7 888 3333333333333 2 3 44444 99 2 0 222 5 8 0 6 11111 6 3 333333 1 5555
consensus : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
Reference ( family-307 ) : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
gi|1 : TCATATATATT--T-----------C-----AT-----GTAGTGTAATAAAC----CC-AT-GGCATATCTTTTATATCAACCTAGTG-----TGATATCACT-ACAGATATATCGCT-AGGTGTTC-CTATATTCCTCGGCT---------------CATA---------TG------------AC-----------------T-----G-AACTTTGCCAGAACATAT--AAGTGAAGTTGAT-TTGTCATG------------TTATTTTTAGATAAAACATCAACCTATGAATGACAGAAACTAATGTGT----GATTTT-----TTCCTTGGTCCTTATACAGGTGATCTGAAAAATAAATG---GTAAAT-----GCA--CCATTTTCCTGAGTTATGTGA-TAAAAAGA--ATCTTATTATCATGTTCATCTATTAATTAATTTATTAAATTTG-TTGGCAAAAATGAT-CGATGCTCCGTA-GAACCTCC-----CAT-AACATTTTTTTGCCAACTCA-----TTTAATGAATT-CAAT----AATAAACAAGCACTCATGTAAGATCCTCTAT
gi|10 : ttcttacatatAAA-AAATG----TAAAC-------------TTTTCCTCAGTTATGTGA-TAAAACGA--ATCTTACATTCGTTCTCA-TTATTATTGAATGTATTAAACTCGTTTGGG--GAATTATATAATGCTCGGCA-GAGCCTCGCATATCAT-AATAAATTGATAGCGACTC-----------TAGATT-TACT----GATAAATaaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|11 : ggtatattgacCCAAGTTAGTTGA-TCAAAATA--ATCTTGCATTCATACTCATTTTTTATAAGATTTATAAAACT----TGGAAAAAATCATATTAAACTCAGTAAGAGTCTCC-----TAT-AATATATTTTTGTCAACTCA-----TTTAATAAATT-CAAT----ATTAAATAAACACTCATGTAAGATCCtatataaaatatgttttata
gi|12 : AAATA---GTATAT-----GTA--CCATTTTCCTGAGTTATGTGA-TAA-----------------------CATTT-----T---TTTATTAAATGCG----GCAAAAACAATATAATGCTAGGCA-GAACCTCG-----TATTAATATATTTT-GCCAACTTG-----TATAATAAATT-CAAT----AATAAATGAGCACTCATTTAAGAGCCTCTATcata
gi|13 : TGTGA-TAAATAGG--GTCTTACATT----------TATCACTAAATTCATTGAAATTG-TTGGCAAAAATGATATTATTCTTGACA-AAACCACA-----CAT-AATA---------------------------AAATTCCAAT----AATAAATGAGCATTTATTCAAGATCCTCTATgt
gi|14 : ATATTAATCTAGTG-----CAATATGACT-TCCGAATCCTCACT-TGGCATTTTCCTTATAACTCTCCT---------------CCCACCAAAGAAATGCCAAAG-----TAC-----------------TT-TCTG-A--GTTGCCCGAATATA
gi|15 : tTTTATCACCTA-ATT--T-----A-----C-----AGTGCAAG-AGTGTAATAAAC----CC-AT-TACATATCTTTCATATGA--CTGATGGGAACTAATAT-ACA-TCTACTTTAT
gi|15 : aTCATA---TGACTGATGGGAACTAATATACATC-TACTTTATTTGTTC-TTGTTCATTttgttcttgttcatt
gi|19 : atttatcacctaatttacagtgcaagagtgtaataaacccattacatatcttTTGATAAACT-CAAT----AATAAATAAATACTCATGTAAGATCCTC
gi|19 : TATATGA-TATAACGAGGATCTTACATGAGTATTTATTTATTATTGAGTTTATCAAgttatatcatatacata
gi|2 : TTTATCAAATA-ATT--T-----A-----CTGCATAG-----G-AGTGTAATAAATAAATCC-AT-GCCATATTTTT-ACATTAACCCAGTG-----TAATATCACC-ACAGAATCCTCACT-TGGCATTTTCCGTATTACTCGGCT---------------T------------TC-----G-----TACGTAAAATACCGAAGCAGTT-TCCG-A--CTTTCCTGAATATAT--AAATGCCGTAGAT-TTGTCTTGGT-AAAATGACGTT--TTTAAGACGTTACGTCATACTCCGACAGACGCAAACTAATATGT--C-GGCTTTA----TTC-TCGTTACTCAGAGAGGTGTAGTGTTAAATAAACG---GTAAAT-----TTA--CCATTTTCCCGAGTTATGTGG-TAAAACGA--ATCTTACATTTGTGCACATGCATTATTGAATTTATTAAACTCC-TGTGTAAAAACGATACAATGCACGGC---AGTCTCG-----CAT-AATATA-ACTTGCCAACTCG-----TTTAATAAATT-CAAT----AATGAATGAGCACTCAATTAAGATcata
gi|20 : atataT-CAAT----AATAAACGAACACTCATGCAAGGTTCTCTATtttttt
gi|3 : ATTGCATA-ATCAGT-----G-----C-----AG-----G-AATGTAATAAAC----CC-CTTAACATATTTTTCATATTAACCTAGTG-----TAATATCACT-TCTGATTCATAGCTATGTTTTTTTCCATATAACTCAGCT---------------C------------TA-----G-----TACGAAAAAAGTAC------TT-TCCA-A--CTTGCCCAAATATATCAAAATGATAATG-T-TTGTCATGAT-TAAATGATGT------------------CATATGATGAC----AGAAAATAATATGC--CTGATTTT-----TTC-TTGTTCTTTGTTGAGGTGATCTGTTAAATAAATG---GTAAAT-----GTAATCCCCCCCCCCCAGTTATGGGA-TGAAAC-A--ATCTTCCATTCATGCTCATTTATTACTGAATTTATTAAACTCA-TTAGGAAAAATGATATCATGCTCAGCA-GAGCCTTG-----GA--AATTTGTTTCT-CCAACTTG-----TTTAATAAATT-CAATGATGAATTAATAAATACTCATTTCACATCCTCTATa
gi|4 : taTTTATCACATA-ATA--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-GT-GACATATTTTTGATTTTAACCGAGTG-----CAATATCACT-TCAGATTCATCGCT-TGGTGTTTTCAGTATAACTCGTCT---------------C------------TG-----G-----TAC-----------------TT-TCTA-A--TGTGCCTAAATAAAT--AAATGATGTTGAA-CTGTCATGGT-TAAATGACATTATATCCAGATGTTACATCATATGATGACTTATGGAAGCAAATATGC--CAGATTTT-----TGC-TCGTTCCTTATAGAAGTGATCTGTTTAATAAATG---GTAAAC-------------TTTTTTTAAATTATGTGA-TAAAACAA--ATCTTACATTCATGCTCATTCATTATTGAATTTATTAAACTTG-TTGGTAAAAATAATATAATACTTGGCA-GAGCCTTG-----CAT-AATATATTTTTTCCAATTCA-----TTTAATAAATT-CAAT----AATAATTAGACATTTGTGTAAGATCCTCTAT
gi|5 : TATTTTTTATATTAGCCTGGTG-----TAATATCACT-TTTGATTAAATGCT-CGGTGTTTTCTGTAAATCTTGGCT---------------CACGTACAAAAATTG-----GCACAGTAC-----------------TTATATGGA--CTTGTCCGAATATAT--GAATGACATTGAG-TTGTCATAGT-TAAATAACTTTATTTTGAGATGTTACGTCATAAAATGACTCACGACAACAAATATGC--CCAATTTTG----TTT-TCGTTC-TTATTTAGAAGATCTGTTAAATATATG---GTAAAT-----GTA--A-ACTTTTCTGAGTTATGTGA-TAAAATGA--ATCTTACATTGGAACTCATTTATTATTGCATTTATCAAAGTCA-TTGGGAAACATGATATTATGCTCAGCA-GTGCTTCG-----CAT-AATATGTGTTTTCCAACTCG-----TTTAATAAATT-CAAT----AATAAATAAGCATTCATGTAAGATTCTGTAT
gi|6 : TTACATA-ACT--TTTGATG-----C-----AG-----A-AGTGTAATAAAC----CTTAA-GACTTATTTTGT-TATTAACCTTGTG-----TAATATCACAACCTG--TCATTGCT-CAGCATTTTTTGTATAACTAGGCT---------------C------------TT-----G-----TATGTAAAATACTAAGCTTTTT-TTCG-A--TTTGTCAAAATATAA--AAATGACATTGATATCAT-ATGGT-AAAATGAAGTTATTTTACGATGTAACATCATACAATGAAGGGCGGAAATTAATATGC--C--------------C-TCATT--TT-TAGA--TAATC---TAAACAGATAACTGTAAATTTAAGGTA--CAA-TTTCCTGAATTATGTGATTAAAAC----ATCTTGCATTCATGCTCATTTATTTTTTAATGTGTGA----TG-TT------AATG---TGAGTCTTAATA-GAGCCTCG-----CAT-GGCATAATTTTGCCGACTTGTTTTTTTTAATAAGTT-AATT----AAga
gi|7 : ttTC-TTGATTCTTACAGAAGTGATCTTTTTAATAACTG---GTAAAC-----GTA--CCATTTACCTGAGTTATGTTA-TAAAAAGA--ATCTTACATTTGAGCTCATTTATTATTGAATTTATTAAACTTC-CTGG-AAATTTTATATAATGCTGGGTG-GAGCCTCA-----CAT-AATATATTTTTACCAACTCG-----TTTAATAAATC-CGAA----AATAAATGAGCACTCATGTAAGATTCTCTAcga
gi|8 : TTATCACATA-ATC--T-----ATGGCGC-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTGATATTAACCTAGTG-----TAATATCACT-TCAGGTTCATTGC--------TTTCAG----ACTTGCCT-------------------------------------------------------------------G-A--TT-------ACATA----AATGACATCGAT-TTGTCATGGT-TAAATGACGTTATTTTGAGACGTTACGTCATACGATAAC
gi|9 : ATATTTTTGATATTGATGTAGTG-----TAATATCATT-TCCGATTCATCCCT-CGGTGTTTTCCATAGAACTTGGCTGTTGTGCGTTATGTGC------------TG-----AAC---TAC-----------------TA-TCTG-G--CTTGCCCAAATATAG--AAATGATGTCGAT-TTGTTATGATAAAAATGACGTTATTTTGAGATGTTAAATTATACATTGACTTACAGAActtcaaattcactgaaatt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTCATTGGGCAAGACATGGCATAAACACGTGCTTATTACTAATTCAACCAGGTAAATAAAGGATAATTTG
Unaligned ( gi|17 ): CTGACGTTACTTTGTCTTGTTTATAAAATTTAAATTCAACGTAAACCAATTTTGATACAGATCGT
Unaligned ( gi|18 ): ATAACCAATGACGTATTGTGGACATTTACTAAAATACAATCACATGTTTCCAAAGGCTGTATT
Unaligned ( gi|21 ): TCTGAGATGTAAAATTGAAAGAAAAGAAATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333 11111 1111 11111 6666666666666666666666666666666666666666666666666666666666666666 111 222222222222222 1111111111111 111111
lowQualScore : 5 77 55555555555555555 44444 5 2222 5 5 5 00000 4 1 77 22 0 8888888888888888888888888888888888888888888888888888888888888888 22 4 66 1 000 3 5 0 77 0 3 0 1 55 55 999999999999999 5 55 0 1 777 8888888888888 1 3 66666 33 0 1 555 0 5 1 3 99999 3 4 000000 3 6666
lowQualScore : . .. ................. ..... . .... . . . ..... . . .. .. . ................................................................ .. . .. . ... . . . .. . . . . .. .. ............... . .. . . ... ............. . . ..... .. . . ... . . . . ..... . . ...... . ....
lowQualScore : 7 99 11111111111111111 33333 7 1111 7 7 3 00000 0 0 11 66 9 7777777777777777777777777777777777777777777777777777777777777777 88 4 11 9 222 1 0 2 88 1 4 5 1 66 99 444444444444444 0 99 1 7 888 3333333333333 2 3 44444 99 2 0 222 5 8 0 6 11111 6 3 333333 1 5555
consensus : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
Reference ( family-307 ) : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
gi|1 : TCATATATATT--T-----------C-----AT-----GTAGTGTAATAAAC----CC-AT-GGCATATCTTTTATATCAACCTAGTG-----TGATATCACT-ACAGATATATCGCT-AGGTGTTC-CTATATTCCTCGGCT---------------CATA---------TG------------AC-----------------T-----G-AACTTTGCCAGAACATAT--AAGTGAAGTTGAT-TTGTCATG------------TTATTTTTAGATAAAACATCAACCTATGAATGACAGAAACTAATGTGT----GATTTT-----TTCCTTGGTCCTTATACAGGTGATCTGAAAAATAAATG---GTAAAT-----GCA--CCATTTTCCTGAGTTATGTGA-TAAAAAGA--ATCTTATTATCATGTTCATCTATTAATTAATTTATTAAATTTG-TTGGCAAAAATGAT-CGATGCTCCGTA-GAACCTCC-----CAT-AACATTTTTTTGCCAACTCA-----TTTAATGAATT-CAAT----AATAAACAAGCACTCATGTAAGATCCTCTAT
gi|10 : ttcttacatatAAA-AAATG----TAAAC-------------TTTTCCTCAGTTATGTGA-TAAAACGA--ATCTTACATTCGTTCTCA-TTATTATTGAATGTATTAAACTCGTTTGGG--GAATTATATAATGCTCGGCA-GAGCCTCGCATATCAT-AATAAATTGATAGCGACTC-----------TAGATT-TACT----GATAAATaaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|11 : ggtatattgacCCAAGTTAGTTGA-TCAAAATA--ATCTTGCATTCATACTCATTTTTTATAAGATTTATAAAACT----TGGAAAAAATCATATTAAACTCAGTAAGAGTCTCC-----TAT-AATATATTTTTGTCAACTCA-----TTTAATAAATT-CAAT----ATTAAATAAACACTCATGTAAGATCCtatataaaatatgttttata
gi|12 : AAATA---GTATAT-----GTA--CCATTTTCCTGAGTTATGTGA-TAA-----------------------CATTT-----T---TTTATTAAATGCG----GCAAAAACAATATAATGCTAGGCA-GAACCTCG-----TATTAATATATTTT-GCCAACTTG-----TATAATAAATT-CAAT----AATAAATGAGCACTCATTTAAGAGCCTCTATcata
gi|13 : TGTGA-TAAATAGG--GTCTTACATT----------TATCACTAAATTCATTGAAATTG-TTGGCAAAAATGATATTATTCTTGACA-AAACCACA-----CAT-AATA---------------------------AAATTCCAAT----AATAAATGAGCATTTATTCAAGATCCTCTATgt
gi|14 : ATATTAATCTAGTG-----CAATATGACT-TCCGAATCCTCACT-TGGCATTTTCCTTATAACTCTCCT---------------CCCACCAAAGAAATGCCAAAG-----TAC-----------------TT-TCTG-A--GTTGCCCGAATATA
gi|15 : tTTTATCACCTA-ATT--T-----A-----C-----AGTGCAAG-AGTGTAATAAAC----CC-AT-TACATATCTTTCATATGA--CTGATGGGAACTAATAT-ACA-TCTACTTTAT
gi|15 : aTCATA---TGACTGATGGGAACTAATATACATC-TACTTTATTTGTTC-TTGTTCATTttgttcttgttcatt
gi|19 : atttatcacctaatttacagtgcaagagtgtaataaacccattacatatcttTTGATAAACT-CAAT----AATAAATAAATACTCATGTAAGATCCTC
gi|19 : TATATGA-TATAACGAGGATCTTACATGAGTATTTATTTATTATTGAGTTTATCAAgttatatcatatacata
gi|2 : TTTATCAAATA-ATT--T-----A-----CTGCATAG-----G-AGTGTAATAAATAAATCC-AT-GCCATATTTTT-ACATTAACCCAGTG-----TAATATCACC-ACAGAATCCTCACT-TGGCATTTTCCGTATTACTCGGCT---------------T------------TC-----G-----TACGTAAAATACCGAAGCAGTT-TCCG-A--CTTTCCTGAATATAT--AAATGCCGTAGAT-TTGTCTTGGT-AAAATGACGTT--TTTAAGACGTTACGTCATACTCCGACAGACGCAAACTAATATGT--C-GGCTTTA----TTC-TCGTTACTCAGAGAGGTGTAGTGTTAAATAAACG---GTAAAT-----TTA--CCATTTTCCCGAGTTATGTGG-TAAAACGA--ATCTTACATTTGTGCACATGCATTATTGAATTTATTAAACTCC-TGTGTAAAAACGATACAATGCACGGC---AGTCTCG-----CAT-AATATA-ACTTGCCAACTCG-----TTTAATAAATT-CAAT----AATGAATGAGCACTCAATTAAGATcata
gi|20 : atataT-CAAT----AATAAACGAACACTCATGCAAGGTTCTCTATtttttt
gi|3 : ATTGCATA-ATCAGT-----G-----C-----AG-----G-AATGTAATAAAC----CC-CTTAACATATTTTTCATATTAACCTAGTG-----TAATATCACT-TCTGATTCATAGCTATGTTTTTTTCCATATAACTCAGCT---------------C------------TA-----G-----TACGAAAAAAGTAC------TT-TCCA-A--CTTGCCCAAATATATCAAAATGATAATG-T-TTGTCATGAT-TAAATGATGT------------------CATATGATGAC----AGAAAATAATATGC--CTGATTTT-----TTC-TTGTTCTTTGTTGAGGTGATCTGTTAAATAAATG---GTAAAT-----GTAATCCCCCCCCCCCAGTTATGGGA-TGAAAC-A--ATCTTCCATTCATGCTCATTTATTACTGAATTTATTAAACTCA-TTAGGAAAAATGATATCATGCTCAGCA-GAGCCTTG-----GA--AATTTGTTTCT-CCAACTTG-----TTTAATAAATT-CAATGATGAATTAATAAATACTCATTTCACATCCTCTATa
gi|4 : taTTTATCACATA-ATA--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-GT-GACATATTTTTGATTTTAACCGAGTG-----CAATATCACT-TCAGATTCATCGCT-TGGTGTTTTCAGTATAACTCGTCT---------------C------------TG-----G-----TAC-----------------TT-TCTA-A--TGTGCCTAAATAAAT--AAATGATGTTGAA-CTGTCATGGT-TAAATGACATTATATCCAGATGTTACATCATATGATGACTTATGGAAGCAAATATGC--CAGATTTT-----TGC-TCGTTCCTTATAGAAGTGATCTGTTTAATAAATG---GTAAAC-------------TTTTTTTAAATTATGTGA-TAAAACAA--ATCTTACATTCATGCTCATTCATTATTGAATTTATTAAACTTG-TTGGTAAAAATAATATAATACTTGGCA-GAGCCTTG-----CAT-AATATATTTTTTCCAATTCA-----TTTAATAAATT-CAAT----AATAATTAGACATTTGTGTAAGATCCTCTAT
gi|5 : TATTTTTTATATTAGCCTGGTG-----TAATATCACT-TTTGATTAAATGCT-CGGTGTTTTCTGTAAATCTTGGCT---------------CACGTACAAAAATTG-----GCACAGTAC-----------------TTATATGGA--CTTGTCCGAATATAT--GAATGACATTGAG-TTGTCATAGT-TAAATAACTTTATTTTGAGATGTTACGTCATAAAATGACTCACGACAACAAATATGC--CCAATTTTG----TTT-TCGTTC-TTATTTAGAAGATCTGTTAAATATATG---GTAAAT-----GTA--A-ACTTTTCTGAGTTATGTGA-TAAAATGA--ATCTTACATTGGAACTCATTTATTATTGCATTTATCAAAGTCA-TTGGGAAACATGATATTATGCTCAGCA-GTGCTTCG-----CAT-AATATGTGTTTTCCAACTCG-----TTTAATAAATT-CAAT----AATAAATAAGCATTCATGTAAGATTCTGTAT
gi|6 : TTACATA-ACT--TTTGATG-----C-----AG-----A-AGTGTAATAAAC----CTTAA-GACTTATTTTGT-TATTAACCTTGTG-----TAATATCACAACCTG--TCATTGCT-CAGCATTTTTTGTATAACTAGGCT---------------C------------TT-----G-----TATGTAAAATACTAAGCTTTTT-TTCG-A--TTTGTCAAAATATAA--AAATGACATTGATATCAT-ATGGT-AAAATGAAGTTATTTTACGATGTAACATCATACAATGAAGGGCGGAAATTAATATGC--C--------------C-TCATT--TT-TAGA--TAATC---TAAACAGATAACTGTAAATTTAAGGTA--CAA-TTTCCTGAATTATGTGATTAAAAC----ATCTTGCATTCATGCTCATTTATTTTTTAATGTGTGA----TG-TT------AATG---TGAGTCTTAATA-GAGCCTCG-----CAT-GGCATAATTTTGCCGACTTGTTTTTTTTAATAAGTT-AATT----AAga
gi|7 : ttTC-TTGATTCTTACAGAAGTGATCTTTTTAATAACTG---GTAAAC-----GTA--CCATTTACCTGAGTTATGTTA-TAAAAAGA--ATCTTACATTTGAGCTCATTTATTATTGAATTTATTAAACTTC-CTGG-AAATTTTATATAATGCTGGGTG-GAGCCTCA-----CAT-AATATATTTTTACCAACTCG-----TTTAATAAATC-CGAA----AATAAATGAGCACTCATGTAAGATTCTCTAcga
gi|8 : TTATCACATA-ATC--T-----ATGGCGC-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTGATATTAACCTAGTG-----TAATATCACT-TCAGGTTCATTGC--------TTTCAG----ACTTGCCT-------------------------------------------------------------------G-A--TT-------ACATA----AATGACATCGAT-TTGTCATGGT-TAAATGACGTTATTTTGAGACGTTACGTCATACGATAAC
gi|9 : ATATTTTTGATATTGATGTAGTG-----TAATATCATT-TCCGATTCATCCCT-CGGTGTTTTCCATAGAACTTGGCTGTTGTGCGTTATGTGC------------TG-----AAC---TAC-----------------TA-TCTG-G--CTTGCCCAAATATAG--AAATGATGTCGAT-TTGTTATGATAAAAATGACGTTATTTTGAGATGTTAAATTATACATTGACTTACAGAActtcaaattcactgaaatt
blockSeqs : . AG ACTGCAT TGCAA . AAAT T T C GGAAC A C AT CA CACGTACAAAAATTGGCACAGTACTTA CT G . C TCA A A AA A G CT TG ATCTACTTTATTTG . CA G ACT TTTAAGGTACA T T CGAGG CG G CGT G A A CATAT T A GTTTTT C GATG
blockSeqs : . . TTGATGC . . . . . C . . T T CA CCCACCAAAGAAATGCCAAAGTACTT CC . . T T T . A C A TG AG CCAATTTTG . AC G . TGTAATCC C . CGA CA A CG A T . . . G A . .
blockSeqs : . . ATGGCGC . . . . . G . . A T TT TTCGTACGTAAAATACCGAAGCAGTT CC . . C T T . T G G TG TT CGGCTTTA . CT A . TGTACC T . ATA AG A TG C A . . . G G . .
blockSeqs : . . AC . . . . . T . . T T TG CTTGTATGTAAAATACTAAGCTTTTT CT . . T T T . T A A AA TC CTGATTTT . CC G . TTTACC C . AGG TG G CC C T . . . G G . .
blockSeqs : . . GC . . . . . T . . A C TG GTTGTGCGTTATGTGCTGAACTACTA AT . . C A T . T G G CA GG CAGATTTT . TC A . CGTACC C . CGA CA G CA T A . . . T G . .
blockSeqs : . . AC . . . . . G . . T C CA CTAGTACGAAAAAAGTACTT TC . . A G C . A G A CG TT C . C . . TGTAA T . CAA CA G TG G C . . . T A . .
blockSeqs : G . . T C TG CTGGTACTT CT . . C . C . T . . CA . . . . C T . TGA GG G CA T A . . . G G . .
blockSeqs : . . . A . . . . . . . . . C T . AGA CA G TG G T . . . A G . .
blockSeqs : . . C T . CA TG T TC . G . . . . . . .
blockSeqs : . C . G . . A . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons : AC*************** CC ** T* CNGATTTN*******
originalCons : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--C-GATTTT-----TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
finalCons : TTTATCACATA-ATT--TAC---------------AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGTT-AAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGCCNGATTTN-------TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTCATTGGGCAAGACATGGCATAAACACGTGCTTATTACTAATTCAACCAGGTAAATAAAGGATAATTTG
Unaligned ( gi|17 ): CTGACGTTACTTTGTCTTGTTTATAAAATTTAAATTCAACGTAAACCAATTTTGATACAGATCGT
Unaligned ( gi|18 ): ATAACCAATGACGTATTGTGGACATTTACTAAAATACAATCACATGTTTCCAAAGGCTGTATT
Unaligned ( gi|21 ): TCTGAGATGTAAAATTGAAAGAAAAGAAATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333 11111 1111 11111 6666666666666666666666666666666666666666666666666666666666666666 111 111111111 1111111111111 111111
lowQualScore : 5 77 55555555555555555 44444 5 2222 5 5 5 00000 4 1 77 22 0 8888888888888888888888888888888888888888888888888888888888888888 22 4 66 1 000 3 5 0 88 0 3 0 1 55 55 888888888 88 5 55 0 1 777 8888888888888 1 3 66666 33 0 1 555 0 5 1 3 99999 3 4 000000 3 6666
lowQualScore : . .. ................. ..... . .... . . . ..... . . .. .. . ................................................................ .. . .. . ... . . . .. . . . . .. .. ......... .. . .. . . ... ............. . . ..... .. . . ... . . . . ..... . . ...... . ....
lowQualScore : 7 99 11111111111111111 33333 7 1111 7 7 3 00000 0 0 11 66 9 7777777777777777777777777777777777777777777777777777777777777777 88 4 11 9 222 1 0 2 88 1 4 5 1 66 99 333333333 77 0 99 1 7 888 3333333333333 2 3 44444 99 2 0 222 5 8 0 6 11111 6 3 333333 1 5555
consensus : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-NAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--CCG----ATTTT-TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
Reference ( family-307 ) : TTTATCACATA-ATT--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTNATATTAACCTAGTG-----TAATATCACT-TCNGATTCATCGCT-CGGCGTTTTCCGTATAACTCGGCT---------------C------------TG-----G-----TAC-----------------TT-TCCG-A--CTTGCCCGAATATAT--AAATGACGTCGAT-TTGTCATGGT-TAAATGACGTTATTTTGAGATGTTACGTCATACGATGACTGACGGAAACTAATATGC--CNG----ATTTN-TTC-TCGTTCCTTATAGAGGTGATCTGTTAAATAAATG---GTAAAC-----GTA--CCATTTTCCCGAGTTATGTGA-TAAAACGA--ATCTTACATTCGTGCTCATTTATTATTGAATTTATTAAACTCG-TTGGNAAAAATGATATNATGCTCGGCA-GAGCCTCG-----CAT-AATATATTTTTGCCAACTCG-----TTTAATAAATT-CAAT----AATAAATGAGCACTCATGTAAGATCCTCTAT
gi|1 : TCATATATATT--T-----------C-----AT-----GTAGTGTAATAAAC----CC-AT-GGCATATCTTTTATATCAACCTAGTG-----TGATATCACT-ACAGATATATCGCT-AGGTGTTC-CTATATTCCTCGGCT---------------CATA---------TG------------AC-----------------T-----G-AACTTTGCCAGAACATAT--AAGTGAAGTTGAT-TTGTCATG------------TTATTTTTAGATAAAACATCAACCTATGAATGACAGAAACTAATGTG----TG----ATTTT-TTCCTTGGTCCTTATACAGGTGATCTGAAAAATAAATG---GTAAAT-----GCA--CCATTTTCCTGAGTTATGTGA-TAAAAAGA--ATCTTATTATCATGTTCATCTATTAATTAATTTATTAAATTTG-TTGGCAAAAATGAT-CGATGCTCCGTA-GAACCTCC-----CAT-AACATTTTTTTGCCAACTCA-----TTTAATGAATT-CAAT----AATAAACAAGCACTCATGTAAGATCCTCTAT
gi|10 : ttcttacatatAAA-AAATG----TAAAC-------------TTTTCCTCAGTTATGTGA-TAAAACGA--ATCTTACATTCGTTCTCA-TTATTATTGAATGTATTAAACTCGTTTGGG--GAATTATATAATGCTCGGCA-GAGCCTCGCATATCAT-AATAAATTGATAGCGACTC-----------TAGATT-TACT----GATAAATaaatgtagcagttcacgatgtccttgagcaagacgctttatacacatatgcttagtactggttcatcccaggaaaacgtcaagcgtaatttgtataagttgtaataaattgctgtttttcaatcaaagtaaaataaataagtttactcgaaatgaagcagtttttggtatatatttatgttaatttttcagtcctataaagaactcttaacca
gi|11 : ggtatattgacCCAAGTTAGTTGA-TCAAAATA--ATCTTGCATTCATACTCATTTTTTATAAGATTTATAAAACT----TGGAAAAAATCATATTAAACTCAGTAAGAGTCTCC-----TAT-AATATATTTTTGTCAACTCA-----TTTAATAAATT-CAAT----ATTAAATAAACACTCATGTAAGATCCtatataaaatatgttttata
gi|12 : AAATA---GTATAT-----GTA--CCATTTTCCTGAGTTATGTGA-TAA-----------------------CATTT-----T---TTTATTAAATGCG----GCAAAAACAATATAATGCTAGGCA-GAACCTCG-----TATTAATATATTTT-GCCAACTTG-----TATAATAAATT-CAAT----AATAAATGAGCACTCATTTAAGAGCCTCTATcata
gi|13 : TGTGA-TAAATAGG--GTCTTACATT----------TATCACTAAATTCATTGAAATTG-TTGGCAAAAATGATATTATTCTTGACA-AAACCACA-----CAT-AATA---------------------------AAATTCCAAT----AATAAATGAGCATTTATTCAAGATCCTCTATgt
gi|14 : ATATTAATCTAGTG-----CAATATGACT-TCCGAATCCTCACT-TGGCATTTTCCTTATAACTCTCCT---------------CCCACCAAAGAAATGCCAAAG-----TAC-----------------TT-TCTG-A--GTTGCCCGAATATA
gi|15 : tTTTATCACCTA-ATT--T-----A-----C-----AGTGCAAG-AGTGTAATAAAC----CC-AT-TACATATCTTTCATATGA--CTGATGGGAACTAATAT-ACA-TCTACTTTAT
gi|15 : aTCATA---TGACTGATGGGAACTAATATACATCTACTTTATTTG-TTC-TTGTTCATTttgttcttgttcatt
gi|19 : atttatcacctaatttacagtgcaagagtgtaataaacccattacatatcttTTGATAAACT-CAAT----AATAAATAAATACTCATGTAAGATCCTC
gi|19 : TATATGA-TATAACGAGGATCTTACATGAGTATTTATTTATTATTGAGTTTATCAAgttatatcatatacata
gi|2 : TTTATCAAATA-ATT--T-----A-----CTGCATAG-----G-AGTGTAATAAATAAATCC-AT-GCCATATTTTT-ACATTAACCCAGTG-----TAATATCACC-ACAGAATCCTCACT-TGGCATTTTCCGTATTACTCGGCT---------------T------------TC-----G-----TACGTAAAATACCGAAGCAGTT-TCCG-A--CTTTCCTGAATATAT--AAATGCCGTAGAT-TTGTCTTGGT-AAAATGACGTT--TTTAAGACGTTACGTCATACTCCGACAGACGCAAACTAATATGT--CGG----CTTTA-TTC-TCGTTACTCAGAGAGGTGTAGTGTTAAATAAACG---GTAAAT-----TTA--CCATTTTCCCGAGTTATGTGG-TAAAACGA--ATCTTACATTTGTGCACATGCATTATTGAATTTATTAAACTCC-TGTGTAAAAACGATACAATGCACGGC---AGTCTCG-----CAT-AATATA-ACTTGCCAACTCG-----TTTAATAAATT-CAAT----AATGAATGAGCACTCAATTAAGATcata
gi|20 : atataT-CAAT----AATAAACGAACACTCATGCAAGGTTCTCTATtttttt
gi|3 : ATTGCATA-ATCAGT-----G-----C-----AG-----G-AATGTAATAAAC----CC-CTTAACATATTTTTCATATTAACCTAGTG-----TAATATCACT-TCTGATTCATAGCTATGTTTTTTTCCATATAACTCAGCT---------------C------------TA-----G-----TACGAAAAAAGTAC------TT-TCCA-A--CTTGCCCAAATATATCAAAATGATAATG-T-TTGTCATGAT-TAAATGATGT------------------CATATGATGAC----AGAAAATAATATGC--CTG----ATTTT-TTC-TTGTTCTTTGTTGAGGTGATCTGTTAAATAAATG---GTAAAT-----GTAATCCCCCCCCCCCAGTTATGGGA-TGAAAC-A--ATCTTCCATTCATGCTCATTTATTACTGAATTTATTAAACTCA-TTAGGAAAAATGATATCATGCTCAGCA-GAGCCTTG-----GA--AATTTGTTTCT-CCAACTTG-----TTTAATAAATT-CAATGATGAATTAATAAATACTCATTTCACATCCTCTATa
gi|4 : taTTTATCACATA-ATA--T-----A-----C-----AG-----G-AGTGTAATAAAC----CC-GT-GACATATTTTTGATTTTAACCGAGTG-----CAATATCACT-TCAGATTCATCGCT-TGGTGTTTTCAGTATAACTCGTCT---------------C------------TG-----G-----TAC-----------------TT-TCTA-A--TGTGCCTAAATAAAT--AAATGATGTTGAA-CTGTCATGGT-TAAATGACATTATATCCAGATGTTACATCATATGATGACTTATGGAAGCAAATATGC--CAG----ATTTT-TGC-TCGTTCCTTATAGAAGTGATCTGTTTAATAAATG---GTAAAC-------------TTTTTTTAAATTATGTGA-TAAAACAA--ATCTTACATTCATGCTCATTCATTATTGAATTTATTAAACTTG-TTGGTAAAAATAATATAATACTTGGCA-GAGCCTTG-----CAT-AATATATTTTTTCCAATTCA-----TTTAATAAATT-CAAT----AATAATTAGACATTTGTGTAAGATCCTCTAT
gi|5 : TATTTTTTATATTAGCCTGGTG-----TAATATCACT-TTTGATTAAATGCT-CGGTGTTTTCTGTAAATCTTGGCT---------------CACGTACAAAAATTG-----GCACAGTAC-----------------TTATATGGA--CTTGTCCGAATATAT--GAATGACATTGAG-TTGTCATAGT-TAAATAACTTTATTTTGAGATGTTACGTCATAAAATGACTCACGACAACAAATATGC--CCA----ATTTTGTTT-TCGTTC-TTATTTAGAAGATCTGTTAAATATATG---GTAAAT-----GTA--A-ACTTTTCTGAGTTATGTGA-TAAAATGA--ATCTTACATTGGAACTCATTTATTATTGCATTTATCAAAGTCA-TTGGGAAACATGATATTATGCTCAGCA-GTGCTTCG-----CAT-AATATGTGTTTTCCAACTCG-----TTTAATAAATT-CAAT----AATAAATAAGCATTCATGTAAGATTCTGTAT
gi|6 : TTACATA-ACT--TTTGATG-----C-----AG-----A-AGTGTAATAAAC----CTTAA-GACTTATTTTGT-TATTAACCTTGTG-----TAATATCACAACCTG--TCATTGCT-CAGCATTTTTTGTATAACTAGGCT---------------C------------TT-----G-----TATGTAAAATACTAAGCTTTTT-TTCG-A--TTTGTCAAAATATAA--AAATGACATTGATATCAT-ATGGT-AAAATGAAGTTATTTTACGATGTAACATCATACAATGAAGGGCGGAAATTAATATGC--C--------------C-TCATT--TT-TAGA--TAATC---TAAACAGATAACTGTAAATTTAAGGTA--CAA-TTTCCTGAATTATGTGATTAAAAC----ATCTTGCATTCATGCTCATTTATTTTTTAATGTGTGA----TG-TT------AATG---TGAGTCTTAATA-GAGCCTCG-----CAT-GGCATAATTTTGCCGACTTGTTTTTTTTAATAAGTT-AATT----AAga
gi|7 : ttTC-TTGATTCTTACAGAAGTGATCTTTTTAATAACTG---GTAAAC-----GTA--CCATTTACCTGAGTTATGTTA-TAAAAAGA--ATCTTACATTTGAGCTCATTTATTATTGAATTTATTAAACTTC-CTGG-AAATTTTATATAATGCTGGGTG-GAGCCTCA-----CAT-AATATATTTTTACCAACTCG-----TTTAATAAATC-CGAA----AATAAATGAGCACTCATGTAAGATTCTCTAcga
gi|8 : TTATCACATA-ATC--T-----ATGGCGC-----AG-----G-AGTGTAATAAAC----CC-AT-GACATATTTTTGATATTAACCTAGTG-----TAATATCACT-TCAGGTTCATTGC--------TTTCAG----ACTTGCCT-------------------------------------------------------------------G-A--TT-------ACATA----AATGACATCGAT-TTGTCATGGT-TAAATGACGTTATTTTGAGACGTTACGTCATACGATAAC
gi|9 : ATATTTTTGATATTGATGTAGTG-----TAATATCATT-TCCGATTCATCCCT-CGGTGTTTTCCATAGAACTTGGCTGTTGTGCGTTATGTGC------------TG-----AAC---TAC-----------------TA-TCTG-G--CTTGCCCAAATATAG--AAATGATGTCGAT-TTGTTATGATAAAAATGACGTTATTTTGAGATGTTAAATTATACATTGACTTACAGAActtcaaattcactgaaatt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTCATTGGGCAAGACATGGCATAAACACGTGCTTATTACTAATTCAACCAGGTAAATAAAGGATAATTTG
Unaligned ( gi|17 ): CTGACGTTACTTTGTCTTGTTTATAAAATTTAAATTCAACGTAAACCAATTTTGATACAGATCGT
Unaligned ( gi|18 ): ATAACCAATGACGTATTGTGGACATTTACTAAAATACAATCACATGTTTCCAAAGGCTGTATT
Unaligned ( gi|21 ): TCTGAGATGTAAAATTGAAAGAAAAGAAATGG