lowQualScore : 1111111111111111111111111111111111111 11111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 22 2222 555555 333 11 1111111111111111111111111111111111111 11 2222222222222 111111 222222222 333 1 111 22222222222222222222 2222 22222222 1 1 1 1 7777777777 11111 1 111 2222222 11111 1 66666666 222 1 6666666666666666666 1 111 3333333333333 222222222222222222222222222222222222222222222222222222222222222222222 1 111 11 11111111 1 11 555555555555555555555555555555555555555555 1 333 5555555555 11 1
lowQualScore : 6 6 6 11 3333 777777 3 333 88 6 7777777777777777777777777777777777777 33 5 1 66 1 5 5 5555555555555 444444 55 1 5 333333333 6 333 99 2 222 00000000000000000000 3333 2 3 66666666 6 7 1 6 3 5 6 4 333 6 5555555555 55 99 3 2 8 6 33333 7 5 5 555 4 66 2222222 00000 1 4 4 6 6 00000000 000 0 6 9999999999999999999 2 33 3 0 3 6 111 2 88 1111111111111 666666666666666666666666666666666666666666666666666666666666666666666 2 000 5 5 22 4 3 3 66 33 55 777 33333333 5 5 55 0 5 333333333333333333333333333333333333333333 2 77 7 5 777 0000000000 33 3
lowQualScore : . . . .. .... ...... . ... .. . ..................................... .. . . .. . . . ............. ...... .. . . ......... . ... .. . ... .................... .... . . ........ . . . . . . . . ... . .......... .. .. . . . . ..... . . . ... . .. ....... ..... . . . . . ........ ... . . ................... . .. . . . . ... . .. ............. ..................................................................... . ... . . .. . . . .. .. .. ... ........ . . .. . . .......................................... . .. . . ... .......... .. .
lowQualScore : 0 0 0 00 0000 555555 0 555 33 0 4444444444444444444444444444444444444 66 0 4 99 4 0 0 4444444444444 444444 22 5 0 000000000 7 777 22 7 888 88888888888888888888 5555 2 2 55555555 5 0 0 0 7 0 0 0 000 0 5555555555 55 00 0 0 0 0 88888 3 0 0 111 4 11 4444444 00000 6 0 0 0 6 00000000 777 3 0 4444444444444444444 7 11 2 2 0 7 777 1 00 4444444444444 777777777777777777777777777777777777777777777777777777777777777777777 8 666 0 0 00 4 0 4 11 77 11 888 11111111 0 0 22 4 0 888888888888888888888888888888888888888888 7 88 8 2 666 0000000000 88 3
consensus : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGNAAAATGAAATAACTTCANCAATCT--GGAAGCTGGCCTTTAATCG---------AAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAA-ACA-TCTAAA-----------GCATCA------GCT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATA-CANGTACTT--TATAAAATG-GTTAAATTTTG--A------TTTCTC--GGT---CCCAAATAAATACCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-ATAATGTNTCTGACTGTCAATTCAAGGGTTGTGAGNTCCAATTGATGGTACTTGCGCGCAAAACTTTAACCA-------TAAGTCAAACAAGGGCNATAA-TTTGCAT-NATATTCGNGCAAGAGTTATCTAACTT-ANTTATT-GTA--GTA-NG--TTTGATGACT-----GGGAAGTC-TT-GTGTGAAGTTTCAAT-A-ATCAAATACAT-NCAGTGGTTGTTGAGATATGGGC--GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCNATAA-T---TTGCATTANATTCGNGCAA-------------GAGTTAT-CGACTTA-T------AGTA-GC-TTGGTGACT----GTAGAAG---G-T----G-GA--AGGGAAGTNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCAA-TGGNTATTGAG--ATANGG-ACTT---GC-----ATGCAAAACTTT-AACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGCT--AAAAA---CC-----AAT--TTGA-AAA
Reference ( gi|1 ) : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCT--GGAAGCTGGCCTTTAACCA---------AAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAA-ACA-TCTACA-----------GCATCA------GCT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATA-CAC-TACTT--TATAATATG-GTTAAATT-----A------T----C--GGT---TCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTCAATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAA--A-------TAAGTCAAATAAGAGCAACAA-TTTGTAT-AATATTCATGCAACAGTTATCTAACTT-ATTCATT-GTA--GCA-TG--TTTGATGACT-----GGGAAGTC-TT-GTGTTAAGTTTTAATCATATCAAATACAT-TGAGTGGTTGATGAGATATGGACTAGATGGTAC----TTGCAAGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAA-T---TTGCATTATATTCATGCAA-------------GAGTTAT-TGA------------AGCATG--TTGATGACTTGGGGGAGGAG---GGGGG--GGGG--GGGGGGGTATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCAA-TGGTTACTGAG--ATGGGG-ACTT---GC-----ACACAAAACGTT-AACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTTAAAAAA---C------AAT--TTGA-AAA
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCT--GGAAGCTAGCCTTTAATCG---------AAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAA-ACA-TCTAAA-----------GCATCA------GCT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTG-TACTT--TATAAAATG-CTTAAATTTTGATA------T----CTCGGT---CCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTATAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA----------TATGTCAAATAAGGGCAATAA-TTTGCAT-TTTATTCATGCAAGAGTTATCTAACTT-ATTCATT-GTA--GTA-TG--TTTTATGACT-----GGTAAGTC-TT-GTGTTAAGTTTAAATCAAATCAAATACAT-TGAGTGGTTGATGAAGTATGGGCAAGATGGTAC----TTGCAAGCAAA---CTAACCAGAATTTTTACGTCAAACAAGGGCAATAA-T---TTGCATTATATTAATCCAA-------------GAGTTATATAACTTAGTTATCATAGTATGT-TTGATGACT----------------------------GCGAAGTGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCAA-TGGATATTAAG--ATTGGG-ACTT---GC-----ACACAAAACTTC-AACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGCT--AAAAA---C------AAT--TTGA-AA
gi|6 : tTTTTATG---TAAAATGAAATAACTTCACC---CTCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAA-ATATTTTAAAGTGGATTAAATGCGTCATTACTGGGT-GTGTGTTTTATAGTA-TTTT---C
gi|14 : tccttcaccaaaCT--GGAAGCTGGTCTTTAATCA---------AAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAATAAA---TGCC-----------ACATTA------GCGAGTGTGTTTCATGGCA-TTTT-----------ACA-CAC--ACTTCATACAAAAT---TTAAATttctatttttattcaaattttgatttttttgacccagataaatgccctgacct
gi|7 : att--AT--TGATTTCA-AGTCTG--GTTAAA-ACA-TCTATA-----------GCATCA------GCT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATG-TATGTACTT--TATAAAATGTATCAATTT-----GGATTTCT----C--GGT---CCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAATAATGTGTCTGACTGTCAAggtgatttctcagacc
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAA-ACA-TCTAAA-----------GCATCA------A-----------TAT-----TTTT---CACA-TAAATA-TATGTACTT--TAAAAAATT-GTTAAATTCGG--A------TTTCTC--GGT---CCCAAATAAATTC-CTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC---AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|13 : T--TAATTTCA-AGTCTG--GTTGAA-ACA-TTTAAA-----------GCATCA------GCT-GTGTGTTT-ATGGCA-TTTT---CACA--AAATA-CATATACTT--AATAATATG-GTTAAATTTTG--A------TTTCTC--GGTGTCCCTAATTAA-TA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|21 : --TGATTTCA-AGTCTG--GTTGAA-ACA-TTTAAA-----------GCATCA------GCT-GTATGTTTTATGGCATTTTT---CACA-TAAAT
gi|18 : TCTCA-AGT-TG--GCT-AA-ATG-TCT-CA-----------TAACTG------GCA-GTGTGTTTTATGGCA-TTTTATACACATTACATA-CAA--AC----TATAAAATG-ATT
gi|4 : aatacttTTGATGGTACTTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAATTTTGCAT-TATTGTCATCCAAGAATTATCTAACTT-AGTTACT-GTA--GAA--G--TTTGATGACCGGGAAGGGAAGTC-TT-GTGTACAGTTTCAA----GTC-AATACAT-GCAATGATTATTGAGATATGG----------AC----TTGCATGCAAAATTTTAACCAtctttggc
gi|5 : agtacaaat-------TAAGTCGAACAATTGCCATAA-TTTGCATTAAT-TTCGACCAAGACTTAATTAACTT-G---ATT-GT------------TTGATAGCC-----CTAAAGAC-TT-G-GTGAAG--------AT-TCAAATCTAT-CTAGTAGGTG----GATACTGA---GATG---------TGCATGCAAAA-TTTAACCGAAAaggtgtgagtacaatagctgtcttattcttcaaatagttgagctaataaccgaattctg
gi|15 : atgtttgataacgtgagggcgttagtgtagtttcaaatcaatcacatatgaggtaactgagatatgtgcatgatatcaagttgcacggaaagccttaaccagcatttc-------TAAGTCAA-CAAAGGCCCTAA-TTTGCAA-AAAACCTG-GCAAGAGTTATCCCACTTGATAAATT--TA--GTT-GG--TTTCATGACT-----ACAAAGCC-AT-ATGTAATGTTTCAATCAgtgtgacgccga
gi|11 : tttcA-TTTGCAT-TTTATTTAGGCAAAAGTTATCTGACTT-ATT-GTA-GTA--GC------TTTGATGACT-----GAGAAGTA-TT-GTGTGAAGTTTCAA----AGC-AATACAT-ACAATGGATACTTAAATATAG-C---------C----TTGCATGCAAAACTTTAACCA
gi|9 : T-AA-ATTCACGCAAGAGTTATCTAACTT-AGTTATT-GTA--GTA-GG--GTTGGTGACT-----AGGAAGGC-TT-GTGTAAAGTTTCAA----GGC-AATACAT-GTAATGTTTATTGAGATA----------GGGAC----TTGCATACAAAACTTTAACCAaggtgtgacagcgatgccgacaatcaggcgagtttaatag
gi|12 : tTATTCATGCAAACGTTATCTTACTA-AATTATT-GTA--GTA-CG--CTTGGTGACT-----GGGAAGTC-TT-GTGTAAAGTTTTAATaggtgtgacgacgatgcctgggtgagtagaatagctctctttattttcaaataatagggct
gi|3 : aaacttagataatacactgcgttgATCCAACTT-AGTCACTAGTAATGCAATAGTTTTGATGACT-----GGAAAGTA-TT-gacaatgacaaatctttattaagcaatgtaggcctctggctcataatacaaaatgttcaacaaag
gi|3 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaaaagaataATT-G-A--GTA-GA--TCTTACAACT-----GCAAAATC-TT-GTATGAAGTTTCAAT---AC--AATACAT-GCAGTGGCTGTCGAGATATAAACTttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|5 : actaaA-TG--TTTGATAAC------GTGAGGGCGTTAGTGT--AGTTTCAA----ATCAATCACATATGAG--GTAACTGAGATATGTGC---ATGATATCAAGTTGCACGGAAAGCCTTAACCAGCATTTCTAAGTCGAACAATTGCCATAA-T---TTGCATTAATTTCGACCAA-------------GACTTAttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|4 : GATGGTAC----TTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAATT---TTGCATTATTGTCATCCAA-------------GAATTAT-CTA------------A-C-----TTAGTTACT----GTAGAAGTTTGATGACCGGGA--AGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCAA-TGATTATTGAG--ATATGG-ACTT---GC-----ATGCAAAATTTT-AACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGTC-TTATTCTTCAAATAGTTGAGCT--AATAA---CCG----AAT--Tattaacttgattgtttgatagccctaaagacttggtgaagattcaaatctatctagtaggtggatactgagatgtgcatgcaaaatttaaccgaaagtgtgacgccga
gi|15 : agtacaaatttTTTCTAAGTCAA-CAAAGGCCCTAA-T---TTGCAAAAAACCTG-GCAA-------------GAGTTAT-ctg
gi|12 : ATAA-TACACTGCGTTGTATTCATGCAAACGTTATCTTACTAAATTAT-TGT------------AGTACGC-TTGGTGACT----------------------------GGGAAGTCTTGTGTAAAGTTTTAATGACAATGA-CA---AA-TCTTTATTAAGCAATGTAG-GCCTCTGGCTCATAATACAAAATGTTCAAC--AAAG-cccacttgataaatttagttggtttcatgactacaaagccatatgtaatgtttcaatca
gi|11 : aaacttagA-T---TTGCATTTTATTTAGGCAA-------------AAGTTATCTGACTTATTGT----AGTA-GCTTTGATGACT-----GAGAAG-----------------------TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACAA-TGGATACTTAA--ATATAG-CCTT---GC-----ATGCAAAACTTT-AACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAG
gi|9 : TTAAATTCACGCAA-------------GAGTTAT-CTA------------A-C-----TTAGTTATT----GTAGTAG---GGTTG--GTGACTAGGAAGGC-TTGTGTAAAGTTTCAA-GGCAAT-A-CATGTAA-TGTTTATTGAG--ATAGGG-ACTT---GC-----ATACAAAACTTT-AACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGCT
gi|5 : TTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG-------T---GC-----ATGCAAAAT-TT-AACCGAAAG-TG------TGAC------GC------CGA
gi|3 : atgtttgataacgtgagggcgttagtgtagtttcaaatcaatcacatatgaggtaactgagatatgtgcatgatatcaagttgcacggaaagccttaaccagcatttctaagtcgaacaattgccataatttgcattaatttcgaccaagacttaattaacttgattgtttgatagccctaaagacTTGTATGAAGTTTCAA-TACAAT-A-CATGCAG-TGGCTGTCGAG--ATATAA-ACTT---
gi|10 : actaaattgagtagatcttacaactgcaaaatcTGTGTGAAGTATTAA-AGCAAT-AGCAT-CTG-TGGTTTGTGAG--AAAAGG-CCTT---GC-----ATGCAAAACCTT-CACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGAT--AAAAATGTC------AATGCTTGATAAAtattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|3 : gATGCAA-TGGCCATCGAG--ATAAAGCATTT---T-----------AAACTTT-AACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA---CCTATTTAAT--TTTA-AAttt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TAAGAGTTATCTAACATACAAAATTGAAAAAATTTAGTAGGTCGAATAACTGCAATACCTTGTATGAAGATTCAATCCAACACACGCAGTGACTGCTGAGTTATAA
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|19 ): AAGAGTTATCTAACTTACAAAATCAACAAAACTGAGTAGGTCTTATAACTGCAATACTTTGCAACACATGCAGTGACTGCTGAGTTAT
Unaligned ( gi|20 ): GAGTAGGTCTTAAAACTACAAACTTTGTATGAAATTTCAATACAATGCATGCAGTGGCTGCCAAGATATTAA
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Unaligned ( gi|23 ): TTGGTTAAATGCCTCATACAGGCTGTGTGTTTAATGGCATTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555555 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 555 111 11 33333333333333333333 4444444444444 333 1111 111 888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 2 6 1 888888 1 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 222 66 0 55 44 1 77 77 8 1 333 1 1 2 2 0 888 88 1 777 22 22 44444444444444444444 0 66 1 4 888 4 4 888 3333333333333 1 0 5 0 222 7777 5 3 1 111 6 1 555 5 111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 1 2 5 1 5 5 22 4 1 66 5 6 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . . ...... . . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... .. . .. .. . .. .. . . ... . . . . . ... .. . ... .. .. .................... . .. . . ... . . ... ............. . . . . ... .... . . . ... . . ... . .............................................................................. .... . . . . . . .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 5 7 0 777777 0 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 555 99 5 99 99 7 99 77 0 0 222 0 0 5 5 5 000 00 0 555 22 88 55555555555555555555 8 55 0 1 666 0 0 888 5555555555555 0 4 0 2 000 0000 0 8 0 777 7 0 444 7 444444444444444444444444444444444444444444444444444444444444444444444444444444 1111 0 2 0 0 0 0 00 4 0 11 3 1 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTT--TATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAA--ATAAGTCAAATAAGGGCAATAAT---TTGCATNATATTCGTGCAAGAGTTATCTAACTT----ANT------N------ATTGTAGTAGGTTTNATGACTGCG-AAGTC-TT-GTGTGAAGTTTCAAT---A-AT---CAAATACATGCAGTGGCTGCCGAGATATGGGC-AGATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTT-AT-C-G-ACT-------T-A-------T---AGTA-GCTT-GGTGACT----GTAG-AG-------------GG------GGAAG----TCTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGNAAAATGAAATAACTTCANCAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACANGTACTT--TATAAAATGGTTAAATTTTGATTTCTCG--GTCCCAAATAAATACCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTNTCTGACTGTCAATTCAAGGGTTGTGAGNTCCAATTGATGGTACTTGCGCGCAAAACTTTAACCATAAGTCAAACAAGGGCNATAAT---TTGCATNATATTCGNGCAAGAGTTATCTAACTT----ANT------T------ATTGTAGTANGTTTGATGACTGGG-AAGTC-TT-GTGTGAAGTTTCAAT---A-AT---CAAATACATNCAGTGGTTGTTGAGATATGGGC--GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCNATAAT---TT-GCATTANATTCGNGCAAGAGTT-AT-C-G-ACT-------T-A-------T---AGTA-GCTT-GGTGACT----GTAGAAGG--T---------GG-AA--GGGAAG----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGNTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTT--TATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAA--ATAAGTCAAATAAGAGCAACAAT---TTGTATAATATTCATGCAACAGTTATCTAACTT----ATT------C------ATTGTAGCATGTTTGATGACTGGG-AAGTC-TT-GTGTTAAGTTTTAATC--ATAT---CAAATACATTGAGTGGTTGATGAGATATGGACTAGATGGTAC----TTGCAAGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTT-AT-T-G-A-----------------------AGCA-TGTT-GATGACTTGGGGGAGGAGG--G---------GG-GG--GGGGGGGGGGTATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-GCATTTTATTTAGGCAAAAGTT-AT-CTG-ACT-------T-A-------TTGTAGTA-GCTTTGATGACT----G---------------------------AGAAG----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : ATAATACACTGCGTTGTATTCATGCAAACGTTATCTTACTA----AAT------T------ATTGTAGTACGCTTGGTGACTGGG-AAGTC-TT-GTGTAAAGTTTTAATGACA-ATGA-CAAAT
gi|12 : aaacttagATAATACACT-GCGTTGTATTCATGCAAACGTT-AT-C-TTACTAAATTATT-G-------T---AGTACGCTT-GGTGACT----G---------------------------GGAAG----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAGctttattaagcaatgtaggcctctggctcataatacaaaatgttcaacaaag
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTT--AATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAAT--TTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAAT---TTGCAAAAAACCTG-GCAAGAGTTATCCCACTT----GAT------A------AATTTAGTTGGTTTCATGACTACA-AAGCC-AT-ATGTAATGTTTCAAT---
gi|16 : tttcAAGAGTTATCTAACATACAAAAT------TGAAAAAATT-TAGTAGGTCGAATAACTGCA-ATACC-TT-GTATGAAGATTC------A-AT---CCAACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC----TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTT----ACA------A------AAT-CAACAA-------AACTGAGTAGGTC-TT-AT----AACTGCAAT---A-CTTTGC-AACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTT--TATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA---TATGTCAAATAAGGGCAATAAT---TTGCATTTTATTCATGCAAGAGTTATCTAACTT----ATT------C------ATTGTAGTATGTTTTATGACTGGT-AAGTC-TT-GTGTTAAGTTTAAATCA-A-AT---CAAATACATTGAGTGGTTGATGAAGTATGGGCAAGATGGTAC----TTGCAAGCAAA---CTAACCAGAATTTTTACGTCAAACAAGGGCAATAAT---TT-GCATTATATTAATCCAAGAGTT-ATAT-A-ACT-------T-AGTTATCAT---AGTATGTTT-GATGACT----GC---------------------------GAAG----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACA-AACT--TT-GTATGAAATTTCAAT---A------C-AATGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : t------ATTG-AGTAGATCTTACAACTGCA-AAATC-TT-GTATGAAGTTTCAAT---A------C-AATACATGCAGTGGCTGTCGAGATAT
gi|3 : actaaAAGAATAATCCAACTT----AGTCACTAGT------AATGCAATAGTTTTGATGACTGGA-AAGTA-TT--T------TTTCA-------------------ATGCAATGGCCATCGAGATA-AAGC---AT----T----TT-------AAACTTTAACCAaaactttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|3 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaaATGCA-ATGGCCATCGAG--ATAAAG--------C-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-aggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|4 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttca--GATGGTAC----TTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAAT---TTTGCATTATTGTCATCCAAGAATT-AT-C-----------------------------TA-ACTT-AGTTACT----GTAGAAGT--TTGATGACCGGG-AA--GGGAAG----TCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttATGTTTGATAAC-GTG-AGGGCGTTAGTGT--AGTTTCAA------AT---CAATCACATAT-GAGGTAACTGAGATATGTGC---ATGATATCAAGTTGCACGGAAAGCCTTAACCAGCATTTCTAAGTCGAACAATTGCCATAAT---TT-GCATTAATTTCGACCAAGACTTAAT-T-A-ACT-------TGA-------T---TGT----TT-GATAGCC----CTA---------------------------AAG----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : TTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTT--T------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTT--TATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTT--TAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTAAATTCACGCAAGAGTT-AT-C-----------------------------TA-ACTT-AGTTATT----GTAGTAGGGTT---------GGTGACTAGGAAG----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 111 2222222222222222222222222222 3333333333 111 22222222 1111 11 111 111 666666666666666666666666666666666666666666666666666666666666666666666666666 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 444 0 1 44 1 77 44 8 1 333 0 0 1 1 1 5 7 777 22 55 8888888888888888888888888888 1 11 4 4 0 7 5555555555 000 0 99 0 44444444 7777 5 3 11 444 5 99 000 5 77 5 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000 2 6 777 555 22 4 1 66 5 6 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... . . .. . .. .. . . ... . . . . . . . ... .. .. ............................ . .. . . . . .......... ... . .. . ........ .... . . .. ... . .. ... . .. . . . ........................................................................... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 000 5 0 99 7 99 77 0 0 222 2 7 0 0 0 5 3 555 22 22 0000000000000000000000000000 0 88 4 4 9 4 2222222222 111 7 33 6 11111111 0000 0 8 00 000 6 22 000 7 99 0 1 0 444444444444444444444444444444444444444444444444444444444444444444444444444 5 4 999 222 00 4 3 11 3 1 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAAT---TTGCATNATATTCGTGCAAGAGTTATCTAACTT----ANT------NA-TTG--------TAGTAGGTCTNATGACTGCGAAGTC-TT-GTGTGAAGTTTCAAT---A-AT--CAA--ATACATGCAGTGGCTGCCGAGATATGGGC-AGATGGTAC----TTGCACGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTT-AT-CTA-ACT-------T-------A-------T---AGTA-GN-TT-GATGACT--------------G-------GGAAGTNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAAT---TTGCATNATATTCGTGCAAGAGTTATCTAACTT----ANT------NA-TTG--------TAGTAGGTTTNATGACTGCGAAGTC-TT-GTGTGAAGTTTCAAT---A-AT--CAA--ATACATGCAGTGGCTGCCGAGATATGGGC-AGATGGTAC----TTGCACGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTT-AT-C-G-ACT-------T-------A-------T---AGTA-GC-TT-GGTGACT--------------GTAGAGGGGGAAGTCTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTTTATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAAT---TTGTATAATATTCATGCAACAGTTATCTAACTT----ATT------CA-TTG--------TAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATC--ATAT--CAA--ATACATTGAGTGGTTGATGAGATATGGACTAGATGGTAC----TTGCAAGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTT-AT-T-G-A-----------------------------AGCA-TG-TT-GATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGGTATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-G--CATTT-TATTTAGGCAAAAGTT-AT-CTG-ACT-------T-------A-------TTGTAGTA-GC-TTTGATGACT--------------G-------AGAAGTATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : ATAATACACTGCGTTGTATTCATGCAAACGTTATCTTACTA----AAT------TA-TTG--------TAGTACGCTTGGTGACTGGGAAGTC-TT-GTGTAAAGTTTTAATGACA-ATGACAA--AT
gi|12 : aaacttagAT--AATACACT-G--CGTTG-TATTCATGCAAACGTT-AT-C-TTACTAAATTATT-------G-------T---AGTACGC-TT-GGTGACT--------------G-------GGAAGTCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAGctttattaagcaatgtaggcctctggctcataatacaaaatgttcaacaaag
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAAT---TTGCAAAAAACCTG-GCAAGAGTTATCCCACTT----GAT------AA-ATT--------TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCAAT---
gi|16 : tttcAAGAGTTATCTAACAT----ACA------AAATTGAAAAAATTTAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTC------A-AT--CCA--ACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC--TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAA-CTG---------AGTAGGTCTTATAACTGCAATACT-TT-GC------------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTT-AATATGTCAAATAAGGGCAATAAT---TTGCATTTTATTCATGCAAGAGTTATCTAACTT----ATT------CA-TTG--------TAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAAATCA-A-AT--CAA--ATACATTGAGTGGTTGATGAAGTATGGGCAAGATGGTAC----TTGCAAGCAAA---CTA--ACCAGAATTT---TTACGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTAATCCAAGAGTT-ATAT-A-ACT-------TAGTTATCA-------T---AGTATGT-TT-GATGACT--------------GC-------GAAGTGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAACT--TT-GTATGAAATTTCAAT---A-----CAA---TGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : tA-TTG---------AGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCAAT---A-----CAA---TACATGCAGTGGCTGTCGAGATAT---------------------------AAACTTTATTATTAAAAGTTATCCTA--TCCAAAAAGAATAATCCAAC---TT-AGTCACTAGTA---ATGCAATAGTT----------------------------------------------TT-GATGACT--------------G-------GAAAGTATT---T----TTTCAA------------TGCA-ATGGCCATCGAG--ATAAAG--------C-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-
gi|4 : actaaGATGGTAC----TTGCACACAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGATAAC--AAT---TTTG--CATTA-TTGTCATCCAAGAATT-AT-CTA-ACT-------T-------AGTTACTGT---AGAA-GT-TT-GATGACC--------------G--GGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCAA------AT--CAATCACATATGAGGTAACTG---AGATATGTGC-A--TGATATCAAGTTGCACGGAAAGCCTTA--ACCAGCATTT---CTAAGTCGAACAATTGCCAT--AAT---TT-G--CATTA-ATTTCGACCAAGACTTAAT-T-A-ACT-------TG------A-------T---TGT-----TT-GATAGCC--------------CTA-------AAGACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTA-AATTCACGCAAGAGTT-AT-CTA-ACT-------T-------AGTTATTGT---AGTA-GGGTT-GGTGACT--------------A-------GGAAGGCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 44444444444444444444444444 2222222 222222222 1111 11 111 111 88888888888888888888888888888 444444444444444444444 11111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 444 0 1 44 1 77 44 8 1 333 0 0 1 1 1 5 7 1 88 66666666666666666666666666 1 3 5 5 2 7 0 8888888 4 77 0 99 0 222222222 7777 5 3 11 444 5 99 000 5 77 5 0 4 1 00000000000000000000000000000 5 222222222222222222222 22222 1 3 555 555 22 4 1 66 5 3 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... . . .. . .. .. . . ... . . . . . . . . .. .......................... . . . . . . . ....... . .. . .. . ......... .... . . .. ... . .. ... . .. . . . . ............................. . ..................... ..... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 000 5 0 99 7 99 77 0 0 222 2 7 0 0 0 5 3 0 00 55555555555555555555555555 0 1 0 0 2 6 1 3333333 9 99 7 33 6 111111111 0000 0 8 00 000 6 22 000 7 99 0 1 5 0 11111111111111111111111111111 0 555555555555555555555 55555 0 7 111 222 00 4 3 11 3 3 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TCA------TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTTATCTAACT-------T-AGTTA---T---AGTA-GN-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATNATATTCGTGCAAGAGTTATCTAACTTAN----TNA------TTG--------TAGTAGGTCTNATGACTGCGAAGTC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ATACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTTATCTAACT-------T-A-------T---AGTA-GN-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTTTATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAATTTGTATAATATTCATGCAACAGTTATCTAACTTAT----TCA------TTG--------TAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATC-ATATCAA--ATACATTGAGTGGTTGATGAGATATGGACTA-GATGGTAC----TTGCAAGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTTAT-TGA-----------------------AGCA-TG-TT-GATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGG-----TATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-G--CATTT-TATTTAGGCAAAAGTTATCTGACT-------T-A-------TTGTAGTA-GC-TTTGATGACT---------------------GAGAAG-----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : AT--AATACACT-G--CGTTG-TATTCATGCAAACGTTATCTTACTAAATTATT-G-------T---AGTACGC-TT-GGTGACT---------------------GGGAAG-----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAG
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAATTTGCAAAAAACCTG-GCAAGAGTTATCCCACTTGA----TAA------ATT--------TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCAAT--
gi|16 : tttcAAGAGTTATCTAACATAC----AAAA-----TTGAAAAAATTTAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTC-----A-ATCCA--ACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC--TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAACTG---------AGTAGGTCTTATAACTGCAATACT-TT-GC---------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA-TATGTCAAATAAGGGCAATAATTTGCATTTTATTCATGCAAGAGTTATCTAACTTAT----TCA------TTG--------TAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAAATCAA-ATCAA--ATACATTGAGTGGTTGATGAAGTATGGGC-AAGATGGTAC----TTGCAAGCAAA---CTA--ACCAGAATTT---TTACGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTAATCCAAGAGTTATATAACT-------T-AGTTATCAT---AGTATGT-TT-GATGACT---------------------GCGAAG-----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAACT--TT-GTATGAAATTTCAAT--A---CAA---TGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : tA------TTG---------AGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCAAT--A---C-A--ATACATGCAGTGGCTGTCGAGATAT----------------------------AAACTTTATTATTAAAAGTTATCCTA--TCCAAAAAGAATAATCCAAC---TT-AGTCACTAGTA---ATGCAATAGTT-------------------------------------TT-GATGACT---------------------GGAAAG-----TATT-T------TTTCA------------ATGCA-ATGGCCATCGAG--ATAAA--------GC-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-
gi|4 : actaa-GATGGTAC----TTGCACACAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGATAAC--AAT---TTTG--CATTA-TTGTCATCCAAGAATTATCTAACT-------T-AGTTACTGT---AGAA-GT-TT-GATGACC---------------------GGGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCAA-----ATCAATCACATATGAGGTAACTG---AGATATGTGC-A---TGATATCAAGTTGCACGGAAAGCCTTA--ACCAGCATTT---CTAAGTCGAACAATTGCCAT--AAT---TT-G--CATTA-ATTTCGACCAAGACTTAATTAACT-------TGA-------T---TGT-----TT-GATAGCC---------------------CTAAAG-----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTA-AATTCACGCAAGAGTTATCTAACT-------T-AGTTATTGT---AGTA-GGGTT-GGTGACT---------------------AGGAAG-----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 444444444444444444444444444 2222222 222222222 1111 11 111 111 4444444444444444 444444444444444444444 11111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 444 0 1 44 1 77 44 8 1 333 0 0 1 1 1 5 7 88 555555555555555555555555555 1 3 2 5 5 2 7 0 8888888 4 77 0 99 0 222222222 7777 5 3 11 444 5 99 000 5 77 5 0 0 4 1 3 9999999999999999 5 222222222222222222222 22222 1 3 555 555 22 4 1 66 5 3 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... . . .. . .. .. . . ... . . . . . . . .. ........................... . . . . . . . . ....... . .. . .. . ......... .... . . .. ... . .. ... . .. . . . . . . ................ . ..................... ..... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 000 5 0 99 7 99 77 0 0 222 2 7 0 0 0 5 3 00 999999999999999999999999999 0 1 2 0 0 2 6 1 3333333 9 99 7 33 6 111111111 0000 0 8 00 000 6 22 000 7 99 0 1 2 5 0 4 5555555555555555 0 555555555555555555555 55555 0 7 111 222 00 4 3 11 3 3 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTTATCTAACTTAGTTA---T--TAGTA-GN-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTTATCTAACTTAGTTA---T---AGTA-GN-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTTTATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAATTTGTATAATATTCATGCAACAGTTATCTAACTTAT----TC------A-TTG--------TAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATC-ATATCAA--ATACATTGAGTGGTTGATGAGATATGGACTA-GATGGTAC----TTGCAAGCAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTCATGCAAGAGTTAT-TGA---------------AGCA-TG-TT-GATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGG-----TATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-G--CATTT-TATTTAGGCAAAAGTTATCTGACTTA-TTG---T---AGTA-GC-TTTGATGACT---------------------GAGAAG-----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : AT--AATACACT-G--CGTTG-TATTCATGCAAACGTTATCTTACTAAATTA---TTGTAGTACGC-TT-GGTGACT---------------------GGGAAG-----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAG
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAATTTGCAAAAAACCTG-GCAAGAGTTATCCCACTTGA----TA------A-ATT--------TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCAAT--
gi|16 : tttcAAGAGTTATCTAACATAC----AA------AATTGAAAAAATTTAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTC-----A-ATCCA--ACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC--TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAA-CTG---------AGTAGGTCTTATAACTGCAATACT-TT-GC---------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA-TATGTCAAATAAGGGCAATAATTTGCATTTTATTCATGCAAGAGTTATCTAACTTAT----TC------A-TTG--------TAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAAATCAA-ATCAA--ATACATTGAGTGGTTGATGAAGTATGGGC-AAGATGGTAC----TTGCAAGCAAA---CTA--ACCAGAATTT---TTACGTCAAACAAGGGCAAT--AAT---TT-G--CATTA-TATTAATCCAAGAGTTATATAACTTAGTTA---TCATAGTATGT-TT-GATGACT---------------------GCGAAG-----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAA-CT-TT-GTATGAAATTTCAAT--A---CAA---TGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : t------A-TTG---------AGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCAAT--A---C-A--ATACATGCAGTGGCTGTCGAGATAT----------------------------AAACTTTATTATTAAAAGTTATCCTA--TCCAAAAAGAATAATCCAAC---TT-AGTCACTAGTA---ATGCAA-------------TAGTT----------------TT-GATGACT---------------------GGAAAG-----TATT-T------TTTCA------------ATGCA-ATGGCCATCGAG--ATAAA--------GC-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-
gi|4 : actaa-GATGGTAC----TTGCACACAAAACTTTA--ACCAGAATTT---CTAAGTCAAACAAGGATAAC--AAT---TTTG--CATTA-TTGTCATCCAAGAATTATCTAACTTAGTTACTGT---AGAA-GT-TT-GATGACC---------------------GGGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCAA-----ATCAATCACATATGAGGTAACTG---AGATATGTGC-A---TGATATCAAGTTGCACGGAAAGCCTTA--ACCAGCATTT---CTAAGTCGAACAATTGCCAT--AAT---TT-G--CATTA-ATTTCGACCAAGACTTAATTAACTTGATT-------------GT-TT-GATAGCC---------------------CTAAAG-----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTA-AATTCACGCAAGAGTTATCTAACTTAGTTA---TTGTAGTA-GGGTT-GGTGACT---------------------AGGAAG-----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 444444444444444444444444444 2222222 1111 2222 111 444444444444444444444444 444444444444444444444 11111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 444 0 1 44 1 77 44 8 1 333 0 0 1 1 1 5 7 88 555555555555555555555555555 1 3 2 5 5 2 7 0 8888888 4 77 0 99 0 6666 1111 2 7 0 111 6 11 1 3 444444444444444444444444 5 222222222222222222222 22222 1 3 555 555 22 4 1 66 5 3 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... . . .. . .. .. . . ... . . . . . . . .. ........................... . . . . . . . . ....... . .. . .. . .... .... . . . ... . .. . . ........................ . ..................... ..... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 000 5 0 99 7 99 77 0 0 222 2 7 0 0 0 5 3 00 999999999999999999999999999 0 1 2 0 0 2 6 1 3333333 9 99 7 33 6 8888 2222 5 0 8 777 7 00 4 4 888888888888888888888888 0 555555555555555555555 55555 0 7 111 222 00 4 3 11 3 3 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGTTAT--TGTAGTA-G---------T-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGTTAT--T--AGTA-G---------N-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTTTATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAATTTGTATAATATTCATGCAACAGTTATCTAACTTAT----TC------A-TTG--------TAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATC-ATATCAA--ATACATTGAGTGGTTGATGAGATATGGACTA-GATGGTAC----TTGCAAGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTAT-TGA--------------AGCA-T---------G-TT-GATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGG-----TATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-GCATTTTATTTAGGCAAAAGTTATCTGACTTA-TTGT-----AGTA-G---------C-TTTGATGACT---------------------GAGAAG-----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : ATAATACACT-GCGTTGTATTCATGCAAACGTTATCTTACTAAATTAT--TGTAGTACG---------C-TT-GGTGACT---------------------GGGAAG-----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAG
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAATTTGCAAAAAACCTG-GCAAGAGTTATCCCACTTGA----TA------A-ATT--------TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCAAT--
gi|16 : tttcAAGAGTTATCTAACATAC----AA------AATTGAAAAAATTTAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTC-----A-ATCCA--ACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC--TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAA-CTG---------AGTAGGTCTTATAACTGCAATACT-TT-GC---------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA-TATGTCAAATAAGGGCAATAATTTGCATTTTATTCATGCAAGAGTTATCTAACTTAT----TC------A-TTG--------TAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAAATCAA-ATCAA--ATACATTGAGTGGTTGATGAAGTATGGGC-AAGATGGTAC----TTGCAAGCAAA---CTAACCAGAATTTTTACGTCAAACAAGGGCAATAAT---TT-GCATTATATTAATCCAAGAGTTATATAACTTAGTTATCAT--AGTATG---------T-TT-GATGACT---------------------GCGAAG-----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAA-CT-TT-GTATGAAATTTCAAT--A---CAA---TGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : t------A-TTG---------AGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCAAT--A---C-A--ATACATGCAGTGGCTGTCGAGATAT
gi|3 : actaaAAGAATAATCCAACTTAGTCAC--T--AGTA-ATGCAATAGTT-TT-GATGACT---------------------GGAAAG-----TATT-T------TTTCA------------ATGCA-ATGGCCATCGAG--ATAAA--------GC-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-aaactttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|4 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaa-GATGGTAC----TTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAAT---TTTGCATTATTGTCATCCAAGAATTATCTAACTTAGTTAC--TGTAGAA-G---------T-TT-GATGACC---------------------GGGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCAA-----ATCAATCACATATGAGGTAACTG---AGATATGTGC-A---TGATATCAAGTTGCACGGAAAGCCTTAACCAGCATTTCTAAGTCGAACAATTGCCATAAT---TT-GCATTAATTTCGACCAAGACTTAATTAACTTGATT------------G---------T-TT-GATAGCC---------------------CTAAAG-----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTAAATTCACGCAAGAGTTATCTAACTTAGTTAT--TGTAGTA-G---------GGTT-GGTGACT---------------------AGGAAG-----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 444444444444444444444444444 2222222 1111 2222 111 111111 11111 444444444444444444444 11111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 444 0 1 44 1 77 44 8 1 333 0 0 1 1 1 5 7 88 555555555555555555555555555 1 3 2 5 5 2 7 0 8888888 4 77 0 99 0 6666 1111 2 7 0 111 6 11 00 0 444444 0 22222 5 222222222222222222222 22222 1 3 555 555 22 4 1 66 5 3 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... . . .. . .. .. . . ... . . . . . . . .. ........................... . . . . . . . . ....... . .. . .. . .... .... . . . ... . .. .. . ...... . ..... . ..................... ..... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 000 5 0 99 7 99 77 0 0 222 2 7 0 0 0 5 3 00 999999999999999999999999999 0 1 2 0 0 2 6 1 3333333 9 99 7 33 6 8888 2222 5 0 8 777 7 00 44 2 444444 1 00000 0 555555555555555555555 55555 0 7 111 222 00 4 3 11 3 3 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-T-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-T-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTTTATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAATTTGTATAATATTCATGCAACAGTTATCTAACTTAT----TC------A-TTG--------TAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATC-ATATCAA--ATACATTGAGTGGTTGATGAGATATGGACTA-GATGGTAC----TTGCAAGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAG-------------AGT------TATTGAAGCA-T-G-TT-GATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGG-----TATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-GCATTTTATTTAGGCAAAAGTTATCTGACTTA----------TTGTAGTA-GCT-TT-GATGACT---------------------GAGAAG-----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : ATAATACACT-GCGTTGTATTCATGCAAACGTTATCTTACTAAAT------TATTGTAGTACG-C-TT-GGTGACT---------------------GGGAAG-----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAG
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAATTTGCAAAAAACCTG-GCAAGAGTTATCCCACTTGA----TA------A-ATT--------TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCAAT--
gi|16 : tttcAAGAGTTATCTAACATAC----AA------AATTGAAAAAATTTAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTC-----A-ATCCA--ACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC--TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAA-CTG---------AGTAGGTCTTATAACTGCAATACT-TT-GC---------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA-TATGTCAAATAAGGGCAATAATTTGCATTTTATTCATGCAAGAGTTATCTAACTTAT----TC------A-TTG--------TAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAAATCAA-ATCAA--ATACATTGAGTGGTTGATGAAGTATGGGC-AAGATGGTAC----TTGCAAGCAAA---CTAACCAGAATTTTTACGTCAAACAAGGGCAATAAT---TT-GCATTATATTAATCCAAGAGTTATATAACTTAGT------TATCATAGTATG-T-TT-GATGACT---------------------GCGAAG-----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAA-CT-TT-GTATGAAATTTCAAT--A---CAA---TGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : t------A-TTG---------AGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCAAT--A---C-A--ATACATGCAGTGGCTGTCGAGATAT
gi|3 : actaaAAGAATAATCCAACTTAGTCACTAGTAATGCAATA-G-T-TTTGATGACT---------------------GGAAAG-----TATT-T------TTTCA------------ATGCA-ATGGCCATCGAG--ATAAA--------GC-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-aaactttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|4 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaa-GATGGTAC----TTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAAT---TTTGCATTATTGTCATCCAAGAATTATCTAACTTAGT------TACTGTAGAA-G-T-TT-GATGACC---------------------GGGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCAA-----ATCAATCACATATGAGGTAACTG---AGATATGTGC-A---TGATATCAAGTTGCACGGAAAGCCTTAACCAGCATTTCTAAGTCGAACAATTGCCATAAT---TT-GCATTAATTTCGACCAAGACTTAATTAACTTGAT------T----------G-T-TT-GATAGCC---------------------CTAAAG-----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTAAATTCACGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-GGTT-GGTGACT---------------------AGGAAG-----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 111 333 1 444444444444444444444444444 2222222 1111 2222 111 111111 11111 444444444444444444444 11111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 66 444 0 1 44 1 77 44 8 1 333 0 0 1 1 1 5 7 88 555555555555555555555555555 1 3 2 5 5 2 7 0 8888888 4 77 0 99 0 6666 1111 2 7 0 111 6 11 00 0 444444 0 22222 5 222222222222222222222 22222 1 3 555 555 22 4 1 66 5 3 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... .. ... . . .. . .. .. . . ... . . . . . . . .. ........................... . . . . . . . . ....... . .. . .. . .... .... . . . ... . .. .. . ...... . ..... . ..................... ..... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 22 000 5 0 99 7 99 77 0 0 222 2 7 0 0 0 5 3 00 999999999999999999999999999 0 1 2 0 0 2 6 1 3333333 9 99 7 33 6 8888 2222 5 0 8 777 7 00 44 2 444444 1 00000 0 555555555555555555555 55555 0 7 111 222 00 4 3 11 3 3 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-T-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-T-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGA-TAAATACAC-TACTTTATAATATGGTTAAATT---AT----CG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTC-AATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAATTTGTATAATATTCATGCAACAGTTATCTAACTTAT----TC------A-TTG--------TAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATC-ATATCAA--ATACATTGAGTGGTTGATGAGATATGGACTA-GATGGTAC----TTGCAAGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAG-------------AGT------TATTGAAGCA-T-G-TT-GATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGG-----TATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-GCATTTTATTTAGGCAAAAGTTATCTGACTTA----------TTGTAGTA-GCT-TT-GATGACT---------------------GAGAAG-----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : ATAATACACT-GCGTTGTATTCATGCAAACGTTATCTTACTAAAT------TATTGTAGTACG-C-TT-GGTGACT---------------------GGGAAG-----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAG
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA--AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT-------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAATTTGCAAAAAACCTG-GCAAGAGTTATCCCACTTGA----TA------A-ATT--------TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCAAT--
gi|16 : tttcAAGAGTTATCTAACATAC----AA------AATTGAAAAAATTTAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTC-----A-ATCCA--ACACACGCAGTGACTGCTGAGTTATca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACATTACATACAA--AC--TATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAA-CTG---------AGTAGGTCTTATAACTGCAATACT-TT-GC---------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACA-TAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTA-TAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA-TATGTCAAATAAGGGCAATAATTTGCATTTTATTCATGCAAGAGTTATCTAACTTAT----TC------A-TTG--------TAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAAATCAA-ATCAA--ATACATTGAGTGGTTGATGAAGTATGGGC-AAGATGGTAC----TTGCAAGCAAA---CTAACCAGAATTTTTACGTCAAACAAGGGCAATAAT---TT-GCATTATATTAATCCAAGAGTTATATAACTTAGT------TATCATAGTATG-T-TT-GATGACT---------------------GCGAAG-----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAA-CT-TT-GTATGAAATTTCAAT--A---CAA---TGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACA-TAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : t------A-TTG---------AGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCAAT--A---C-A--ATACATGCAGTGGCTGTCGAGATAT
gi|3 : actaaAAGAATAATCCAACTTAGTCACTAGTAATGCAATA-G-T-TTTGATGACT---------------------GGAAAG-----TATT-T------TTTCA------------ATGCA-ATGGCCATCGAG--ATAAA--------GC-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-aaactttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|4 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaa-GATGGTAC----TTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAAT---TTTGCATTATTGTCATCCAAGAATTATCTAACTTAGT------TACTGTAGAA-G-T-TT-GATGACC---------------------GGGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCAA-----ATCAATCACATATGAGGTAACTG---AGATATGTGC-A---TGATATCAAGTTGCACGGAAAGCCTTAACCAGCATTTCTAAGTCGAACAATTGCCATAAT---TT-GCATTAATTTCGACCAAGACTTAATTAACTTGAT------T----------G-T-TT-GATAGCC---------------------CTAAAG-----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C--------TTC---TATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACA-TAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAA-TAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACA-TAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC----AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTAAATTCACGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-GGTT-GGTGACT---------------------AGGAAG-----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
blockSeqs : C G AAATAA A ATGTTAATTGAAATAGATACCAGTATACATAG AA T AA G T AA GTGGATTAAAT A TTACTG G A T ATA TT ATA G TT T GT AC A A TA A G T . A AT CAAAATTGAAAAAATTT C A G G A G A TCAAAT C TC CT AAG CAAG A A ACA T GG CACTAG GCT T . GGAAG A G TGA AG TA G T CA A C CTG TCATA G G C GCCACGCTGATGCTAACAT GCGTCA CAA T A . A TGT G GC T
blockSeqs : . . . AAAGTCTGGTTTAAA G . . G . AA TGCC . CTG . . . T T ACA T GT T . GC . T AA . G CAAAATCAACAAAACTG A A A . . A G AAT A . CT A . C G . . TG . CGC . . . C G AG GA TG . A . T C . . . . . GTGACAGCGATGC AA . T C . . C . . .
blockSeqs : GAAATATACAGGT . . . G . AA . . . . . . . T CTG A TT A . GC . G . ATAAATTT T A A . . G T TA A . AT . C . . . TC . TGT . . . G A AG A TG . T . T G . . . . . GGGACGC AT . G C . . C . . .
blockSeqs : . . . G . AA . . . . . . . T ATG C TT T . A . C TTCATTGT T T G . . A G TA A . CC . . TC . GGG . . . A T GT A TG . A . G A . . . . . GTGACGC CC . C C . . . . .
blockSeqs : . . . T . AA . . . . . . . T ATG T TG T . T T A A . . A G AT . . TC . . AC . GT . . . C A GT A TG . C . A A . . . . . GTGACGA GC . C . . .
blockSeqs : . . . A . AT . . . . . . . . AA T CG T . T A G . . G . . . . . CG . GT . . . C G AT C T . T . T A . . . . . . . . G
blockSeqs : . . . G . AA . . . . . . . . . G G G . . . . . . GT . . . C A GG A G . A . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : ATG TT CAATCGAAACTT*************** NAT**** NGT** *********************
originalCons : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACACGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTAC----TC------A-TTG--------TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAAT--A-ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTA-G-T-TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
finalCons : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACA-TAAATACATGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-A-TAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTACAATCGAAACTT---------------AGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCAANAT----CAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTANGT--TT-GATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA
Alignments
lowQualScore : 333333 66666666666666666666666666666666666666 11 22222222222 111111 111 33 1 77777777777777777777 333333333333 1111 2222 111 111111 444444444444444444444 11111 11111 3333333333333333333333333 111111 111 111 11 1
lowQualScore : 1 6 888888 7 33333333333333333333333333333333333333 11 4 0 55 4 4 11 77777777777 4 888888 4 4 4 111 4 5 0 1 44 77 44 8 1 33 0 0 1 1 1 5 7 88 66666666666666666666 1 3 2 5 5 2 7 555555555555 77 0 99 0 6666 1111 2 7 0 111 6 11 00 0 444444 0 2 2 2 222222222222222222222 22222 1 3 555 555 22 4 1 66 5 3 777 11111 4 4 5 2222222222222222222222222 333333 000 1 2 6 6 999 8 11 0
lowQualScore : . . ...... . ...................................... .. . . .. . . .. ........... . ...... . . . ... . . . . .. .. .. . . .. . . . . . . . .. .................... . . . . . . . ............ .. . .. . .... .... . . . ... . .. .. . ...... . . . . ..................... ..... . . ... ... .. . . .. . . ... ..... . . . ......................... ...... ... . . . . ... . .. .
lowQualScore : 0 7 333333 3 55555555555555555555555555555555555555 99 4 1 55 1 0 66 55555555555 0 555555 0 0 0 000 6 4 5 0 99 99 77 0 0 22 2 7 0 0 0 5 3 00 88888888888888888888 0 1 2 0 0 2 6 222222222222 99 7 33 6 8888 2222 5 0 8 777 7 00 44 2 444444 1 0 8 0 555555555555555555555 55555 0 7 111 222 00 4 3 11 3 3 888 11111 4 4 0 8888888888888888888888888 333333 000 0 5 7 7 222 0 00 0
consensus : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACATAAATACATGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTCAATAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTACAAAATC-A---AA---TT-TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCA---AT---ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTANGTTTGATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
Reference ( family-229 ) : TAAAAACCAGGTCGACTCNTCCTTTTTTATGGGGTAAAATG------CTTCAACAATCTGGAAGCTGGCCTTTAATC---------GAAATA----------TA----CA--G--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGCA-TTTT---CACATAAATACATGTACTTTATAAAATGNTTAAATTTTGATTTCTCG--GTCCCAAATAAATGCCCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCANGTTATACGTTAAGTC-ATAATGTGTCTGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGNGNGCAAAANTTTAAATAAGTCAAATAAGGGCAATAATTTGCATAATATTCGTGCAAGAGTTATCTAACTTACAA--TCGA---AA---CT-TAGTAGGTCTNATAACTGCGAAGCC-TT-GTGTGAAGTTTCA---AN---ATCAA--ACACATGCAGTGGCTGCCGAGATATGGGC-A-GATGGTAC----TTGCACGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAGAGTTATCTAACTTAGT------TATTGTAGTANGTTTGATGACT---------------------GGGAAG-----TNTTGTGTGAAGTTTCAA-GNCAAT-A-CATGCA-ATGGTTATTGAG--ATANGGACTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGAC------GC------CGACGC----CCGG---GTGAGTANAATAGCTCTCCTTATTCTTCGAATAGTCGAGC-T-AAAAA--CC-AAT--TTGA-AAA
gi|1 : TAAAAACCAGGTTGACTCATCCTTTTTTATGGGGTAAAATG------CTTCAACAAGCTGGAAGCTGGCCTTTAACC---------AAAATA----------TA----CA--A--AT--TGATTTCA-AGTCTG--GTTGAAACA-TCTACA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---CAGATAAATACAC-TACTTTATAATATGGTTAAATT---A----TCG--GTTCTAAATAAATGCTCCC-CTTTGTAAAATGAATCACACCTTGGGAGTTTATTCAGGTAATATGTTAAGTCAATAATGTGTATGACTGTCAATTCAAGGGTTGCGAGTTCCAATTGATGGTACTTGCGCGCAAAAATTTAAATAAGTCAAATAAGAGCAACAATTTGTATAATATTCATGCAACAGTTATCTAACTTAT----TC------A---TTGTAGCATGTTTGATGACTGGGAAGTC-TT-GTGTTAAGTTTTAATCAT---ATCAA--ATACATTGAGTGGTTGATGAGATATGGACTA-GATGGTAC----TTGCAAGCAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGGCAATAAT---TT-GCATTATATTCATGCAAG-------------AGT------TATTGAAGCATG-TTGATGACTTGGGGGAGGAGGGGGGGGGGGGGGGGG-----TATTGTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGTTACTGAG--ATGGGGACTT---GC-----ACACAAAAC-GTTAACT-AAAG-TG------TGAC------GC------CGACGC----CCGA---GTGAGTAAAATAGCTCTCTTTATTCTTCGAACAGTTGAGCTT-AAAAA--AC-AAT--TTGA-AAA
gi|10 : TGTGTGAAGTATTAA-AGCAAT-AGCAT-CT-GTGGTTTGTGAG--AAAAGGCCTT---GC-----ATGCAAAAC-CTTCACC-AAAGCTGCCACGCTGAT------GCTAACATCGACGCGTCACCGACAAGTGACTGTAATAGCTTTACATCTTCTTCGAATAGTCGAGA-T-AAAAATGTC-AATGCTTGATAAA
gi|11 : gAT---TT-GCATTTTATTTAGGCAAAAGTTATCTGACTTA----------TTGTAGTAGCTTTGATGACT---------------------GAGAAG-----TATTGTGTGAAGTTTCAA-AGCAAT-A-CATACA-ATGGATACTTAA--ATATAGCCTT---GC-----ATGCAAAAC-TTTAACC-AAGG-TG------TGACAGCGATGC------CGACAA----TCAG---GCGAGTTTAATAGttt
gi|12 : ATAATACACT-GCGTTGTATTCATGCAAACGTTATCTTACTAAAT------TATTGTAGTACGCTTGGTGACT---------------------GGGAAG-----TCTTGTGTAAAGTTTTAATGACAATGA-CA---A-ATCTTTATTAAGCAATGTAGGCCTCTGGCTCATAATACAAAATGTTCAACA-AAG
gi|13 : aaacttagT--TAATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTGTG-TTTATGGCA-TTTT---CACA-AAATACATATACTTAATAATATGGTTAAATTTTGATTTCTCGGTGTCCCTAATTAATA--------TTGTAAAATGAATGACACATTAGGAGTTTATTCGAGTTAT
gi|14 : TCTGGAAGCTGGTCTTTAATC---------AAAGTC----------TGGTTTAA--A--ATG-TGATTTAATATTTTGAAGTTGAA------TAAATGCC-------ACAT-TA------G-CGAGTGTGTTTCATGGCA-TTT------------TACACACACTTCATACAAAATTTAAATGGTGATTTCTCA--GACC
gi|15 : atTAAGTCAA-CAAAGGCCCTAATTTGCAAAAAACCTG-GCAAGAGTTATCCCACTTG--A--T--A---AA---TT-TAGTTGGTTTCATGACTACAAAGCC-AT-ATGTAATGTTTCA---A
gi|16 : tttcAAGAGTTATCTAACATACAAAATTGA---AAAAATT-TAGTAGGTCGAATAACTGCAATACC-TT-GTATGAAGATTCA--------ATCCA--ACACACGCAGTGACTGCTGAGTTATtca
gi|18 : tTCTCA-AGT-TG--GCT-AAATG-TCT---------------CAT-AACTG---G-CA-GTGTGTTTTATGGCA-TTTTATACACAT---TACATACAAACTATAAAATGATTaa
gi|19 : aatacttAAGAGTTATCTAACTTACAAAATCAACAAAA---CT-GAGTAGGTCTTATAACTGCAATACT-TT-GC-----------------------A--ACACATGCAGTGACTGCTGAGTTATtctttggc
gi|2 : TAAAAATCAGATCGACTTCTCCTTTTTTATGGGGGAAAATG------CTTCAACAATCTGGAAGCTAGCCTTTAATC---------GAAATA----------TA----CA--GGTAT--TGATTTCA-AGTCAG--GTTGAAACA-TCTAAA-----------GCAT-CA------G-CT-GTGTGTTTTATGGTA-TTTT---TACATAAATATCTGTACTTTATAAAATGCTTAAATTTTGATATCTCG--GTCCCAAATAAATACCCCCACTTTGTAAAATGAATCGCACCTTGGGAGTTTATTCATGTTATACGTTAAGTCTATAATGTATCTGACTGTCAATTCAAGGGTTGTGAGATCCAATTGATGGTACTTGAGGGTAAAATTTTAA-TATGTCAAATAAGGGCAATAATTTGCATTTTATTCATGCAAGAGTTATCTAACTTAT----TC------A---TTGTAGTATGTTTTATGACTGGTAAGTC-TT-GTGTTAAGTTTAA---ATCAAATCAA--ATACATTGAGTGGTTGATGAAGTATGGGC-AAGATGGTAC----TTGCAAGCAAA---CTAACCAGAATTTTTACGTCAAACAAGGGCAATAAT---TT-GCATTATATTAATCCAAGAGTTATATAACTTAGT------TATCATAGTATGTTTGATGACT---------------------GCGAAG-----TGTTTTGTTAAGTTTCAA-GTCAAT-A-CATGCA-ATGGATATTAAG--ATTGGGACTT---GC-----ACACAAAAC-TTCAACC-AAGG-TG------GGAC------GC------CGACAT----CCGG---GTGAGCAGAATAGCTCTCTGTATTCTTCGAAAAGTCGAGC-T-AAAAA---C-AAT--TTGA-AA
gi|20 : tAGTAGGTCTTAAAACTACAAA-CT-TT-GTATGAAATTTCA---AT---AC--A--ATGCATGCAGTGGCTGCCAAGATAT
gi|21 : g--TGATTTCA-AGTCTG--GTTGAAACA-TTTAAA-----------GCAT-CA------G-CT-GTATGTTTTATGGCATTTTT---CACATAAATtaa
gi|23 : TG--GTT-AAATG-CCT---------------CATACA------GGCT-GTGTGTTTAATGGCA-TTTT---
gi|3 : tA---AA---TT-GAGTAGATCTTACAACTGCAAAATC-TT-GTATGAAGTTTCA---AT---AC--A--ATACATGCAGTGGCTGTCGAGATAT
gi|3 : actAAGAATAATCCAACTTAGTCACTAGTAATGCAATAGTTTTGATGACT---------------------GGAAAG-----TATT-T------TTTCA------------ATGCA-ATGGCCATCGAG--ATAAA--------GC-----ATTTTAAAC-TTTAACC-AAGG-T-------------------------TGACCC----CCGG---GTGAGTACAATTGCCCTCCTTATTCTTCAAATAGTCGAGC-TAAAAAA--CC-TAT--TTAA-aaactttattattaaaagttatcctatccaaaaagaataatccaacttagtcactagtaatgcaatagttttgatgactggaaagtattttttcaatgcaatggccatcgagataaagcattttaaactttaaccaaggttgacccccgggtgagtacaattgccctccttattcttcaaatagtcgagctaaaaaacctatttaattttaaattgatc
gi|4 : actaaattgagtagatcttacaactgcaaaatcttgtatgaagtttcaatacaatacatgcagtggctgtcgagatataaactttattattaaaagttatcctatccaaa-GATGGTAC----TTGCACACAAAACTTTAACCAGAATTTCTAAGTCAAACAAGGATAACAAT---TTTGCATTATTGTCATCCAAGAATTATCTAACTTAGT------TACTGTAG-AAGTTTGATGACC---------------------GGGAAGGGAAGTCTTGTGTACAGTTTCAA-GTCAAT-A-CATGCA-ATGATTATTGAG--ATATGGACTT---GC-----ATGCAAAAT-TTTAACC-AAGG-T------------------------------------------GTGAGTACAATAGCTGT-CTTATTCTTCAAATAGTTGAGC-T-AATAA--CCGAAT--Tttttaaattgatc
gi|5 : agtacaaatttGTTTGATAAC-GTGAGGGCGTTAGTGT--AGTTTCA---A----ATCAATCACATATGAGGTAACTG---AGATATGTGC-A---TGATATCAAGTTGCACGGAAAGCCTTAACCAGCATTTCTAAGTCGAACAATTGCCATAAT---TT-GCATTAATTTCGACCAAGACTTAATTAACTTGAT------T----------GTTTGATAGCC---------------------CTAAAG-----ACTTG-GTGAAGATTCAA-ATCTAT-C-TA-GTAGGTGGATACTGAG--ATG------T---GC-----ATGCAAAA--TTTAACCGAAAG-TG------TGAC------GC------CGActg
gi|6 : atTTTTATG---TAAAATGAAATAACTTCACCC-TCAGGAATGTGGCCTTTAATTATGTTAATTGAAATAGATACCAGTATA----CATAG--ATAATGATTTCA-AGTGTG--GTTTAAATATTTTAAAGTGGATTAAATGCGT-CATTACTGG-GT-GTGTGTTTTATAGTA-TTTT---C---T-------TCTATTTT------TATTCAAATTTTGATTTTTTT--GACCCAGATAAATGCCC
gi|7 : tccttcaccaaa--AT--TGATTTCA-AGTCTG--GTTAAAACA-TCTATA-----------GCAT-CA------G-CT-GTGTGTTTTACGGTA-TTTTT--CACATAAATGTATGTACTTTATAAAATGTATCAATTTGGATTTCTCG--GTCCCAAACAAATGCCCCC-TTTTGTAAAATGAATCACACCTTGGGAGTTGATTCAGGTTATTTGATAAGTCAATAATGTGTCTGACTGTCAAtgacct
gi|8 : tgtT--TGATTTTA-AATCTG--GTTGAAACA-TCTAAA-----------GCAT-CA------A------------TAT-----TTTT---CACATAAATATATGTACTTTAAAAAATTGTTAAATTCGGATTTCTCG--GTCCCAAATAAAT-TCCTC-CTTTGTAAAATGATTCACACCTTGGGAGTTTATTCACGTTATACGTTAAGTC---AATGTTTCTGACTGTCAGTTCAAGGGTTGTGAGTTCCAA
gi|9 : TTAAATTCACGCAAGAGTTATCTAACTTAGT------TATTGTAGTAGGGTTGGTGACT---------------------AGGAAG-----GCTTGTGTAAAGTTTCAA-GGCAAT-A-CATGTA-ATGTTTATTGAG--ATAGGGACTT---GC-----ATACAAAAC-TTTAACC-AAGG-TG------TGAC------GA------CGATGC----CTGG---GTGAGTAGAATAGCTCTCTTTATT-TTCAAATAATAGGGC-T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTTCAAGTTAATAAGTAAATGCCCCATTACAAGTAGCATATGTATGTTATGGCTATTTATACACTTCAGGCAAAATTGAAATTTTGATTTTTTAAACT
Unaligned ( gi|22 ): AAATACCATTCTGGAAATTGGTCTTTAATTCTAGTCGGGTTCAATTTAACATTTCAAAGTTGGATAA