lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222 11111111111111 11111111111111
lowQualScore : 44444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 1 1 1 1 1 22 1 666666666666666666 44444444444444444444 11 1111111 111 11111 2222 11 333 5555555555555555555555555555555555555555555555555555555555555555555 2222 1 11 11 1111 2 55555555555555 1 222 1111 1 999999999999999 11111111 222 999999999 2222 1 1111 2222 2222 1111111 1 8888888888888888888888 22222222 7777 44 1 1 9999999999999999 5555555555555555555 222 111 8888888888888888 11 44444444444 3333333333 1 1 2 111111 2 1 1 2222222 55 1 1 11 1 55555555555555 4 1 1 4
lowQualScore : 6 33333 6 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888888 777 2 1 3 7 5 4 2 4 4 11 2 2 111111111111111111 88888888888888888888 66 00 4444444 4 777 8 11111 4 1111 00 111 3333333333333333333333333333333333333333333333333333333333333333333 6 9999 9 2 00 55 4444 2 55555555555555 6 2 7 5 66 555 4444 5 333333333333333 55555555 777 333333333 3 3 0000 5 6 2 6 7777 9 55 8 0000 1 66 1111 4 4444444 5 0000000000000000000000 66 66666666 5 5 9 1111 6 88 6 99 9 0 3 1 8 5555555555555555 6 8 6 9999999999999999999 6 333 777 3 1111111111111111 22 66 88888888888 3 5555555555 1 5 7 55 8 1 222222 5 1 1 7 2 55 3 4444444 4 55 5 6 1 5 9 55 9 00000000000000 0 6 6 5 7 6 0
lowQualScore : . ..... . . ....................................................................................................... ...... ... . . . . . . . . . .. . . .................. .................... .. .. ....... . ... . ..... . .... .. ... ................................................................... . .... . . .. .. .... . .............. . . . . .. ... .... . ............... ........ ... ......... . . .... . . . . .... . .. . .... . .. .... . ....... . ...................... .. ........ . . . .... . .. . .. . . . . . ................ . . . ................... . ... ... . ................ .. .. ........... . .......... . . . .. . . ...... . . . . . .. . ....... . .. . . . . . .. . .............. . . . . . . .
lowQualScore : 0 00000 0 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 000000 000 5 2 0 0 0 3 2 2 1 00 0 2 666666666666666666 44444444444444444444 11 44 4444444 3 666 3 11111 4 2222 22 111 2222222222222222222222222222222222222222222222222222222222222222222 0 8888 3 1 44 66 1111 9 33333333333333 0 4 9 7 22 555 3333 0 888888888888888 55555555 888 555555555 3 7 0000 2 0 4 0 3333 7 11 3 4444 0 11 6666 4 4444444 0 2222222222222222222222 11 00000000 7 4 4 6666 0 33 0 77 3 8 3 3 3 7777777777777777 0 2 0 4444444444444444444 0 333 777 2 5555555555555555 55 88 88888888888 0 0000000000 0 0 0 66 1 2 888888 3 8 9 0 5 00 9 2222222 5 00 2 0 9 0 0 99 5 00000000000000 0 0 0 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATA-TTGTTTTATGATA----ATAAAATTACATCATCANTACCGCAATGCATGATTTTCATATAT-AT---GNATATAAGTNTTT---ATTTGT----G-------AATAACCAAG-ACATA--AATGTACAGACCAGACTAC---GGCGAGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AA---TTT-G-TGTCGACCATGACTT--ATAT--TATGNAATGG--T--TAC-ATGC-------AACACATCTGGACAG-----GGCGGAC-AA-TTTACATACATGAACTGATAG-TTTATA-GAGTAGG---------------NTCCAGTTAAGGATTCATGA------NTACTCACATGCTATATAAAGGACAGATTTATAAACCCGTTGGATCATANAGATACAGTGAATTCATATATA-TTTAATTTCATAAAGGGA-GATAATTAAATTCACAACAACGGAATTTACGATTTTTG-GGATCTTTTNNAGATGCNCATTCAAAGTGCATGATA-ACG-GC---A---ATATATATGGAGATAAT-T----ATTTGTGAATAACC-AAGACATAAATGT-C-ACAGACCAGACTACGGCGAGTGCGC--CTAGCTACAATGCAAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AATTTGGT-GTCGACCATGACTTATATA--CTATGG--ANTTAC-ATGC-------AACACATCTGGACAGGGTG-----G--AG-NACA-ATTTACAT--ACATGAACTGATAGCTTTATATGA--GTAG--GATCCAG-TTAAGGATTCATGACTACTCAC----ATGCTATATAAA--GGACAGATTTATAAACCCGTTGGATCATANAGATACAGTGAATTCAT--ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAATCACGGAATTTACGATT---TTTGGGATCCTTTCCAGATGC--GTTGCAT--A---AT-NCATNGTATATAAGTCAT-----ACACCAAATTTA--TTG--GTTTGGCAGAGGCCTTGATATTGTATCTATG-GTTTGGAGATAATT------ATTTGTGAATAACCAAGACATAAATGTACAGACCAGACTACG--GCGAGTGCGC--CTAGCTACAATGC--AAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AAT--GTGTTAACAATGATTTAT-ATCCTATGGTTTTACAA-TAC
Reference ( gi|1 ) : ACATTTTTGTTGATAATTTCTGTCATTGTTATGCATGTAGACATTTAAACTTTTAACTACTAACATAGTTTTACGGTATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA---CATAATTTTCATATAA-AT---AAATATAAGTTTTT---ATATAT----A-------AATA-CCATG-A--TA--ACTCTACAGACCAGACTAC---GCCGAGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCATGGGATCTACCAACCCAATATAA---TGT-A-TGTCATCCATGACTT--ATAT--TATGCAATGGTTT--TAT-ATGC-------AACATATATAGACTG-----GACGGAC-AG-TTTACATGTATGATCGGATA---------------G---------------ATC-------GGAT--ATGA------GTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATATGCA-TTT-ATTTCATAAAGGGA-A------------ACAGCAACGGCATTTCCGATTTTTG-GGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------A---ATATATATGGAGATATT-T----ATTTGTGAATAACC-G-GACAT---TATCCAACAGATCAGACTACGGCGAGCGCTT--CTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCAATA-GAATTAGG-GTCAACCATGACTTATATA--CTATGG--TTTTAC-ATGC-------AACCCATCTGGAC----TG-----G--AGCTACA-ATTTACAT--ACATGAACTGATAGCTTTATATGA--GAAT--GATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTG-GTA-ATGTTA--TTCATAAAAGGAAACAATTAA------AACCACG------ACGGTT---TTTGGGATCTTTTTCAGATATACGTT-CAC--A---AT-CTATTATATATA---TAT-----ATACCAAATGTA--TGT--GTTTGGTAGAGGACTTGATTTTGTATCTATA-GTATGGCGATAATT------ATTTGTGAACAACCA-GATAAAAATTTACAGACCAGACTACG--GCAAGCACTT--CTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAAT--ATAT--------ATTTATAACCCCATTGTTATATAAGTAC
gi|5 : TATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGC----CATA--TTTCAT-TACCATTTGACATACATGTATTT---ATATAT----ATGGAGTGAATAACCAGGCA--TA--AATGTACAGATCAGACTAC---GGCGAATGCGCCGAGTTACAATGCAAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AA---TTT-GGTGTCGACCATGACTT--A-----TATACAATGGATC--TAC-ATGC-------AACATATCTGGACTG-----GACGGAC-AGATTTACATACATGAGCTGATAGTTTTATACGAGTAGG---------------ATCCAGTTAAGGATTCATGACAACTCATAT------GCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATATATA-TTTAATTTCATAAAGG
gi|3 : aCATT--CACAATGCATGAT----ATATAT-AT---GGAGATAA----TT---ATTTGT----G-------AATAACCAAG-ACATA--AATGTACAGACCAGACTAC---GGCGAGTGCGCCTAGCTA
gi|2 : ttatttgtgaataaccaagatataaatgtacagatcagactacggcgagtgcacctagctacaatgcaaaccatagatacaatatcaaggcctctgccaaaccaataactttggtttcgaccatgacttatataccatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttttatgagtaggatccagttaaggattcattactactcacatgctttataaaggacagatttataaacccgttggatcatatagacacagtgaattcatatatttttaatttcataaagggagataattaaattcacaacaacggaatttacgatttttgggatcttttcagatgctATATAT-GT---GGAGATAAATATTT---GTGAAT----A-------A----CCAAG-A--TATAAATGTACAGACCAGACTAC---GGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCAAT-TAA---TTTGG-TGTCGACCATGACTT--ATATACTATGGAA-----T--TAC-ATGC-------AACACATCTGGACAG-----GGTGGACAAA-TTTACATACATGAACTGATAGCTTTATATGAGTAGG---------------ATCCAGTTAAGGATCCATGA------CTACTCACATGCTATATAAAGGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCATATATA-TTTAATTTCATAAAGGGA-GATAATTAAATTCACAACAACTGAATTTACGATTTGTG-AG
gi|4 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactatATAA-AT---ATGTACACGCCTTCCAAAT-TGT----G-------AATAACCAAG-ACATA--AATGTACAGACCAGACTAC---GGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTG--G-TGTCGACCATGACTT--ATATACTATAGAA-----T--TAC-ATGC-------AACACATCTGGACAG-----GGTGGACAAA-TTTACATACATGAAGTGATA---------------G---------------CTT--------TAT--ATGT------GTAtagtatatatatatatatatatatctgttaattattgttttg
gi|7 : gtacccaaagttatgatagacggactataATATAATTTATT---ATATTTGTGAA-------AAAA-CAAAC-A--TA--AATCTACATACCAGACTGA---GGCAAGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCAAGGCATCTATCAACCCAATAGAA---TTG-G-TGTTAACAATGATTT--ATAT--CCT---ATGGTTT--TACAATAC-------AACACATCTGGACTG-----GAGGGAC-A--CTTATATGCATGGACTGATA---------------G---------------CT---------------TGA------GTACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCA-----------TAAAATCATATGTA-TAT-ATTTCATAAAGGGATATTATTGAAATC-ACAACAACAGTATTTCCGATGTTTGCGTATATggatccagtttaaagattcatgactacgcacatgctatataaaggacctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|3 : agtTT---ATTTGT----G-------AATAACCAAG-A--TATAAATGTACAGATCAGACTAC---GGCGAGTGCACCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA-AC---TTT-GGTTTCGACCATGACTT--ATAT-----ACCATGGAAT--TAC-ATGC-------AACACATCTGGACAG-----GGTGGAC-AAATTTACATACATGAAGTGATA---------------GCTTTTTATGAGTAGGATCCAGTTAAGGATTCATTA------CTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATATATT-TTTAATTTCATAAAGGGA-GATAATTAAATTCACAACAACGGAATTTACGATTTTTG-GGATCTTTTCA-GATGCTCATTCACAATGCATGAT---------------ATATATATGGAGATAAT-T----ATTTGTGAATAACCAA-GACATAAATGT---ACAGACCAGACTACGGCGAGTGCGC--CTAGCTAatatgtcgtatttgatttttatc
gi|6 : TT---ATTTGT----G-------AATAACCAAG-ACATA--AATGTACAGACCAGACTAC---GGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA-AA---TTTGG-TGTCGACCATGACTTAAATAC--TATGGAA-----T--TAC-ATGC-------AACACATCTGGACAG-----GGTGGACAAA-TTTACATACATGAAGTGATAGCTTTATATGAGTAGG---------------ATCCAGTTAAGGATTCATGA------CTACACACATGCTATATTAAGGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCATATATA-TTTAATTTCATAAAGGGA-GATAATTAAATTCACAACAACGGAATTTACGATTTTTG-GGAT
gi|9 : taaTT---ATTTGG----G-------AATAACCAAG-ACATA--AATGTATAGACCAGACTAC---GGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCAATA-AA---TTT-GCTGTCGACCATGACTGAAATAC--TACGAAA-----T--TAC-ATGC-------AACACACCAGGACAG-----GGTGGCA-AA-TTAATAAACATGAACTGATA---------------G---------------CTT--------TAT--ATGA------GTA
gi|10 : gagatga-A--TA--AATGTTCAGACCAGACTAC---GGCGAGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCAATAGAT---TTG-G-TGGCAACCATGACTT--AT-T--TA--CTATGGTTT--TAC-ATGC-------GACACATCTGGACAG-----GACAGTC-AA-TTTACATACATggatccagttaaggagtcatgactactcacatgctatataaaggacatatat
gi|8 : ttaattgtgcataaccagat-A--TA--AATCTATAGACCAGAATACAGTGCC-AGCTTGCCTATCTACAATGCAAACCAAGGACACAATACTATAGAAT---------CAA----------------------ATGACTT--CTAA---AGGCAGCAGTCTCTTAC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGGGAC-AA-TTTACATACATGAACTGATA---------------C---------------CTT-------TG-T--ATGA------ATAcaa
gi|8 : ccagacAT------GCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGAAGAACTTT-ATTTCATAAAGGGA-GATAATTGAAATCACAACAATGATACTTCCAAATATTG-GAA-A---TACAGATGCCAATTTAAAagtaagatcaagtaaaggattcatacttattcacatgctaaaaaaagggcatagaagcacattggatcatgaagatacagtataatcagaagaactttatttcataaagggagataattgaaatcacaacaatgatacttccaaatattggaaatacagatgccaatttaaat
gi|14 : ccagacataaatctatagaccagaatacagtgccagcttgcctatctacaatgcaaaccaaggacacaatactatagaatcaaatgacttctaaaggcagcagtctcttacatgcgtctagaaacacgtcgggactgtcactaagggacaatttacatacatgaactgatacctttgtatgaataagtaagatcaagtaaaggattcatacttattcacACCCGTTGGATCATGAAGATACAGTGAATTTAT-TTTT-TTT-ATTTCt
gi|4 : taaaagatttagcc------------ACAACAACGGAATTTACGATTTTTG-GGATCTTT
gi|11 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcatgactacgcacatgctatataaaggacctgc------------ACAACAACGGAATTTACGATTTTTG-GGATCTTTTgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|4 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgGTAC--CCAAAGT-TATGATAGACGGACTATA---ATAAATATGTACACGCC-TTCCAAATTGTGAATAACC-AAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGC--CTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATA--CTATAG--AATTAC-ATGC-------AACACATCTGGACAGGGTG-----G--A--CA-A-ATTTACAT--ACATGAAGTGATAGCTTTATATGT--GTAG--GATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAAgaatttaattatc
gi|5 : TGACATACATGT---ATTTATATATATGGAG----------------TGAATAACC-A-GGCATAAATGT---ACAGATCAGACTACGGCGAATGCGC--CGAGTTACAATGCAAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AATTTGGT-GTCGACCATGACTTATATA--CAATGG--ATCTAC-ATGC-------AACATATCTGGAC----TG-----G--ACGGACAGATTTACAT--ACATGAGCTGATAGTTTTATACGA--GTAG--GATCCAG-TTAAGGATTCATGAC-A---ACTCATATGCTATATAAA--GGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCAT--ATATAT-TTAATTTCATAAAGGggacctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|2 : atatatattgttttatgataataaaattacatcattagtaccgccatatttcattaccatt---ATATATGTGGAGATAAA-T----ATTTGTGAATAACC-AAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGC--CTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCAATT-AATTTGGT-GTCGACCATGACTTATATA--CTATGG--AATTAC-ATGC-------AACACATCTGGACAGGGTG-----G--A--CA-A-ATTTACAT--ACATGAACTGATAGCTTTATATGA--GTAG--GATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCAT--ATATAT-TTAATTTCATAAAGGGAGATAATTAA------ATTCACA------ACAACTGAATTTACGA--TTTGTGAG-TA---GT-----------AT-ATA-TATATATA---TAT-----ATATC
gi|15 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactatTATATTAGGATAAT-T----ATTTGCGAACAAAC-A-GACAT---AATTCTACGGACCAGTGTACGtgttaattattgttttg
gi|9 : GAGATGAT-T----ATTTGGGAATAACC-AAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGC--CTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCAATA-AATTTGCT-GTCGACCATGACTGAAATA--CTACGA--AATTAC-ATGC-------AACACACCAGGAC----AG-----G---GTGGCA-AATTA-ATAAACATGAACTGATAGCTTTATATGA--GTAG--GATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATAT
gi|6 : TAAT-T----ATTTGTGAATAACC-AAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCAT--CTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA-AATTTGGT-GTCGACCATGACTTAAATA--CTATGG--AATTAC-ATGC-------AACACATCTGGACAGGGTG-----G--A--CA-A-ATTTACAT--ACATGAAGTGATAGCTTTATATGA--GTAG--GATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCAT--ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATT---TTTGGGAT
gi|7 : TATTAT----ATTTGTGAAAAAAC-A-AACAT---AAATCTACATACCAGACTGAGGCAAGCTCGC--CGAGCTACAATGCAAACTATGGACATCAGATCAAGGCATCTATCAACCCAATA-GAATTGGT-GTTAACAATGATTTATATC--CTATGG--TTTTACAATAC-------AACACATCTGGAC----TG-----G--AGGGAC--ACTTATAT--GCATGGACTGATAGCTT
gi|3 : agtatataattT-T----ATTTGTGAATAACC-AAGATATAAATGT---ACAGATCAGACTACGGCGAGTGCAC--CTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA-ACTTTGGT-TTCGACCATGACTTATATA--CCATGG--AATTAC-ATGC-------AACACATCTGGACAGGGTG-----G--A--CA-A-ATTTACAT--ACATGAAGTGATAGCTTTTTATGA--GTAG--GATCCAG-TTAAGGATTCATTACTACTCAC----ATGCTTTATAAA--GGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCAT--ATA-TTTTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATT---TTTGGGATC-TTTTCAGATGCTCATT-CAC--A---AT-GCATGATATATA---TAT-----gagtactcacatgctatataaaggaccaatttaaaaactctttggatcataaaatcatatgtatatatttcataaagggatattattgaaatcacaacaacagtatttccgatgtttgcgtatatatatgtcgtatttgatttttatc
gi|10 : T-T----AATTGTGCATAACC-A-GATATAAATGTTCA---GACCAGACTACGGCGAGCGCGT--CTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCAATA-GATTTGGT-GGCAACCATGACTTATTTA--CTATGG--TTTTAC-ATGC-------GACACATCTGGAC----AG-----GACAGT--CA-ATTTACAT--ACATCAAggagataattatttgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagcta
gi|8 : CC-A-GACAT---AAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATGCAAACCAAGGACACAA------------TACT------ATA-GAA-------TCAA--ATGACTTCTAAAGGCAGCAGTCTCTTAC-ATGCGTCTAGAAACACGTCGGGAC----TGTCACTA--AGGGACA-ATTTACAT--ACATGAACTGATACCTTTGTATGAATAAGTAAGATCAAG-TAAAGGATTCATACTTATTCAC----ATGCTA-A-AAAAAGGGC----ATAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-AGA-ACTTTAT-TTCATAAAGGGAGATAATTGA------AATCACA------AC
gi|7 : TACTCAC----ATGCTATATAAA--GGACCAATTTAAAAACTCTTTGGATCATA-----------AAATCATATGTATATAT----TTCATAAAGGGATATTATTGA------AATCACA------ACaatgatacttccaaatattggaaatacagatgccaatttaaat
gi|14 : agtatataatttattatatttgtgaaaaaacaaacataaatctacataccagactgaggcaagctcgccgagctacaatgcaaactatggacatcagatcaaggcatctatcaacccaatagaattggtgttaacaatgatttatatcctatggttttacaatacaacacatctggactggagggacacttatatgcatggactgatagcttgagCCCGTTGGATCATGAAGATACAGTGAAaacagtatttccgatgtttgcgtatatatatgtcgtatttgatttttatc
gi|4 : taaaagatttagccaACCCTGTCCAGATGT--GTTGCATGTA---ATTCTATAGTATATAAGTCATGGTCGACACCAAATTTA--TATTGGTTTGGTAGAGGCCTTGATATTATATCTATG-GTTTGtttattttttttatttc
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgTCCAGATAT--GTTGCAT--GTAGAT-CCATTGTATATAAGTCATGGTCGACACCAAATTTA--TTG--GTTTGGCAGAGGCCTTGATATTGTGTCTATG-GTTTGggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcatgactacgcacatgctatataaaggacctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|2 : atatatattgttttatgataataaaattacatcattagtaccgccatatttcattaccatttgacatacatgtatttatatatatggagtgaataaccaggcataaatgtacagatcagactacggcgaatgcgccgagttacaatg-----ACACCAAAT-TAATTG---GTTTGGCAGAGGCCTTGATATTGTATTTATG-GTTTGctggacggacagatttacatacatgagctgatagttttatacgagtaggatccagttaaggattcatgacaactcatatgctatataaaggacagatctataaacccgttggatcatagagatacagtgaattcatatatatttaatttcataaagg
gi|6 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactatatatatgtggagataaatatttgtgaataaccaagatataaatgtacagaccagactacggcgagtgcgcctagctacaatg-----ACACCAAATTTA--TTG--GTTTGGCAGAGGCCTTGATATTGTATCTATG-GTTTGcgaccatgacttatatactatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaactgatagctttatatgagtaggatccagttaaggatccatgactactcacatgctatataaaggacatatttataaacccgttggatcatatagatacagtgaattcatatatatttaatttcataaagggagataattaaattcacaacaactgaatttacgatttgtgagtagtatatatatatatatatatatctgttaattattgttttg
gi|3 : taattatttgtgaataaccaagacataaatgtacagaccagactacggcgagtgcatctagctacaatgACCAAAGTTA--TTG--GTTTGGCAGAGGCCTTGATATTGTATCTATG-GTTTGcgaccatgacttaaatactatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgagtaggatccagttaaggattcatgactacacacatgctatattaaggacagatttataaacccattggatcatatagatacagtgaattcatatatatttaatttcataaagggagataattaaattcacaacaacggaatttacgatttttgggat
gi|10 : ttatttgtgaataaccaagatataaatgtacagatcagactacggcgagtgcacctagctacaatgACCAAATCTA--TTG--GTTTGATAGATGCTTTGATATTGTGTCTGTG-GTTTGttcgaccatgacttatataccatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttttatgagtaggatccagttaaggattcattactactcacatgctttataaaggacagatttataaacccgttggatcatatagacacagtgaattcatatatttttaatttcataaagggagataattaaattcacaacaacggaatttacgatttttgggatcttttcagatgctcattcacaatgcatgatatatatatggagataattatttgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagcta
gi|5 : ttaattgtgcataaccagatataaatgttcagaccagactacggcgagcgcgtctagctacaatgTGTATTTATATATATGG--------------A---GTGAATAACCA-GGCATAAATGTACAGATCAGACTACG--GCGAATGCGC--CGAGTTACAATGC--AAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AAT--ggcaaccatgacttatttactatggttttacatgcgacacatctggacaggacagtcaatttacatacatcaa
gi|2 : atatatattgttttatgataataaaattacatcattagtaccgccatatttcattaccatttgacatacaTATATATA--TGTGGAGATAAAT------ATTTGTGAATAACCAAGATATAAATGTACAGACCAGACTACG--GCGAGTGCGC--CTAGCTACAATGC--AAACCATAAATACAATATCAAGGCCTCTGCCAAACCAAT-TAAT--ttggtgtcgaccatgacttatatacaatggatctacatgcaacatatctggactggacggacagatttacatacatgagctgatagttttatacgagtaggatccagttaaggattcatgacaactcatatgctatataaaggacagatctataaacccgttggatcatagagatacagtgaattcatatatatttaatttcataaagg
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaacATATATA--TATGGAGATAATT------ATTTGTGAATAACCAAGACATAAATGTACAGACCAGACTACG--GCGAGTGCGC--CTAGCTAttggtgtcgaccatgacttatatactatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaactgatagctttatatgagtaggatccagttaaggatccatgactactcacatgctatataaaggacatatttataaacccgttggatcatatagatacagtgaattcatatatatttaatttcataaagggagataattaaattcacaacaactgaatttacgatttgtgagtagtatatatatatatatatatatctgttaattattgttttg
gi|7 : ttatttgtgaataaccaagatataaatgtacagatcagactacggcgagtgcacctagctacaatgcaaaccatagatacaatatcaaggcctctgccaaaccaataactttggtttcgaccatgacttatataccatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttttatgagtaggatccagttaaggattcattactactcacatgctttataaaggacagatttataaacccgttggatcatatagacacagtgaattcatatatttttaatttcataaagggagataattaaattcacaacaacggaatttacgatttttgggatcttttcagatgctcattcacaatgcatgA-GTAT----ATAATTTATTATATTTGTGAAAAAACA-AACATAAATCTACATACCAGACTGAG--GCAAGCTCGC--CGAGCTACAATGC--AAACTATGGACATCAGATCAAGGCATCTATCAACCCAATAGAATTGGTGTTAACAATGATTTAT-ATCCTATGGTTTTACAA-TAC
gi|9 : GATGATT------ATTTGGGAATAACCAAGACATAAATGTATAGACCAGACTACG--GCAAGTGCGC--CTAGCTACAATGC--AAACCATAGATGCAATATCAAGGTCTCTGCCAAACCAATA-AAT--aacacatctggactggagggacacttatatgcatggactgatagcttgagtactcacatgctatataaaggaccaatttaaaaactctttggatcataaaatcatatgtatatatttcataaagggatattattgaaatcacaacaacagtatttccgatgtttgcgtatatatatgtcgtatttgatttttatc
gi|15 : gaGATAATT------ATTTGCGAACAAACA-GACATAATTCTACGGACCAGTGTACG--ttgctgtcgaccatgactgaaatactacgaaattacatgcaacacaccaggacagggtggcaaattaataaacatgaactgatagctttatatgagtaggatccagttaaggagtcatgactactcacatgctatataaaggacatatat
gi|6 : tatattagTAATT------ATTTGTGAATAACCAAGACATAAATGTACAGACCAGACTACG--GCGAGTGCAT--CTAGCTACAATGC--AAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA-AAT--
gi|3 : TT------ATTTGTGAATAACCAAGATATAAATGTACAGATCAGACTACG--GCGAGTGCAC--CTAGCTACAATGC--AAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATAttggtgtcgaccatgacttaaatactatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgagtaggatccagttaaggattcatgactacacacatgctatattaaggacagatttataaacccattggatcatatagatacagtgaattcatatatatttaatttcataaagggagataattaaattcacaacaacggaatttacgatttttgggat
gi|10 : TT------AATTGTGCATAACCA-GATATAAATGTTCAGACCAGACTACG--GCGAGCGCGT--CTAGCTACAATGC--AAACCACAGACACAATATCAAAGCATCTATCAAACCAATAactttggtttcgaccatgacttatataccatggaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttttatgagtaggatccagttaaggattcattactactcacatgctttataaaggacagatttataaacccgttggatcatatagacacagtgaattcatatatttttaatttcataaagggagataattaaattcacaacaacggaatttacgatttttgggatcttttcagatgctcattcacaatgcatgatatatatatggagataattatttgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagcta
gi|4 : TTGTGAATAACCAAGACATAAATGTACAGACCAGACTACG--GCGAGTGCGC--CTAGCTACAATGC--AAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAgatttggtggcaaccatgacttatttactatggttttacatgcgacacatctggacaggacagtcaatttacatacatcaa
gi|8 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaaCCA-GACATAAATCTATAGACCAGAATACAGTGCCAG--CTTGCCTATCTACAATGC--AAACCAAGGACACAAatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcatgactacgcacatgctatataaaggacctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|13 ): GATTCAGTGAGCTCATAGTAACTGTATTGTTTCATATAGGGAGATACTAATTTCACAATAACGGAGT
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 2 4444 11 6666666 1 22 1 11111 1 111 11 22222222 5555555555555555555555 2222222 33333333 1111 77777777777777777777777777777777 11111 1 222 99999999999 1111 333 44444 1111 11 1 1 11 1 1 22 1 2 111 2 3333 1 33 1 1 1 1 4 1 22222 55 1 1 1 22 5555555555555555 4 1 1 4
lowQualScore : 0 3 2222 4 2 4 1 88 7777777 0 77 2 1 1 99999 0 000 3 44 5 11 0 0 8 5 1 0 0 33333333 22 7777777777777777777777 8 6666666 22222222 8 0000 99999999999999999999999999999999 5 8888 0 3 1 7 1 1 4 44444 3 5 5 1 1 3 0 222 1 0 77 00000000000 2222 0 555 0 99 1 2 55555 8 4 7777 11 6 1 3 7 3 7 3 44 2 5 0 77 0 2 3 999 0 6666 6 5 00 6 5 7 6 7 5 6 2 0 4 4 5 66 6 33333 6 55 6 6 5 5 5 11 2222222222222222 0 6 6 5 7 6 0
lowQualScore : . . .... . . . . .. ....... . .. . . . ..... . ... . .. . .. . . . . . . . ........ .. ...................... . ....... ........ . .... ................................ . .... . . . . . . . ..... . . . . . . . ... . . .. ........... .... . ... . .. . . ..... . . .... .. . . . . . . . .. . . . .. . . . ... . .... . . .. . . . . . . . . . . . . .. . ..... . .. . . . . . .. ................ . . . . . . .
lowQualScore : 0 0 5555 0 5 0 0 00 0000000 5 55 5 5 0 33333 0 555 2 00 0 00 6 6 0 0 4 6 8 66666666 44 6666666666666666666666 0 0000000 66666666 2 8888 44444444444444444444444444444444 6 6666 8 7 8 3 0 0 0 33333 3 9 1 9 9 0 8 333 0 7 33 33333333333 1111 1 999 7 22 0 5 22222 0 0 0000 00 5 0 3 3 3 3 2 88 5 0 5 55 5 5 0 555 5 5555 0 0 00 0 0 0 0 0 0 0 5 0 0 0 0 55 0 00000 0 00 0 0 0 0 0 00 0000000000000000 0 0 0 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TT-TT-TATNT-GTGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAATGG-TT----T--AC-ATGC-------AACACATCTGGAC-------TGGACGGACA-A-TTTACATACATGAACTGATAGC--TTT-ATA-----GAGTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTATTT-ATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTNCGATTTTTGGGATCTTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAG-CA-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCCTTTNCAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANC-AGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATAT--------ATTTATAACCCCATTGTTATATAAGTAC
Reference ( family-200 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATA-TTGTTTTATGATA----ATAAAATTACATCATCANTACCGCAATG---CATGAT--TTTCATATATATGNATATAAGTN-TT-TATTT-GTGAATAACCAAGACATAAATGTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCCTCTGCCAAACCAATA-AATTTG-TGTCGACCATGACTTATAT--TATGNAATGG--T----T--AC-ATGC-------AACACATCTGGAC-------AGGGCGGACA-A-TTTACATACATGAACTGATAG---TTT-ATA-----GAGTAGGNTCCAGTTAAGGATTCATGANTACTCACATGCTATATAAAGGACAGATTTATAAACCCGTTGGATCATANAGATACAGTGAATTCATA-----TATATTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTTNNAGATGCNCATTCAAAGTGCATGATA-ACGG----CAATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGTC--ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGACACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGANTTACATGCAACACATCTGGACAGGGTGGAG-NACAATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACTCAC----ATGCTATATAAA--GGACAGATTTATAAACCCGTTGGATCATANAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAATCACGGAATTTACGATTTTTGGGATCCTTTCCAG--ATGCGTTGCATAATNCATNGTATATAAGTCATACACCAAATTTATTGGTTTGGCAGAGGCCTTGATATTGTATCTATGGTTTGGAGATAATTATTTGTGAATAACCAAGACATAAATGTACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGC--AAACCATAGACACAATATCAAGGCCTCTGCCAAACCAATA-AATGTGTTAACAATGATTTAT-ATCCTATGGTTTTACAA-TAC
gi|1 : TATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA------CATAAT--TTTCATATAAATAAATATAAGTT-TT-TATAT-ATAAATA-CCATGA--TAACTCTACAGACCAGACTACGCCG--AGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCA-TGGGATCTACCAACCCAATATAATGTA-TGTCATCCATGACTTATAT--TATGCAATGG--T----TTTAT-ATGC-------AACATATATAGAC-------TGGACGGACA-G-TTTACATGTATGATCGGATAG----------------------ATC-------GGAT--ATGAGTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATA-----TGCATTT-ATTTCATAAAGGGAA------------ACAGCAACGGCATTTCCGATTTTTGGGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------AATATATATGGAGATATTT----ATTTGTGAATAACC-GGACAT---TATCCAACAGATCAGACTACGGCGAGCGCTTCTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCA--ATAGAATTAGGGTCAACCATGACTTATATACTATGGTTTTACATGCAACCCATCTGGAC----TGGAGCTACAATTTACATACATGAACTGATAGCTTTATATGAGAATGATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTGGTA-ATGTTA--TTCATAAAAGGAAACAATTAA------AACCACG------ACGGTTTTTGGGATCTTTTTCAGATATACGTT-CACAATCTATTATATATA---TATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGTGAACAACC-AGATAAAAATTTACAGACCAGACTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATAT--------ATTTATAACCCCATTGTTATATAAGTAC
gi|10 : acatttttgttgataatttctgtcattgttatgcatgtagacatttaaacttttaactactaacatagttttacggTT----AATTGTGCATAACCA-GATATAAATGTT---CAGACCAGACTACGGCGAGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCA--ATAGATTTGGTGGCAACCATGACTTATTTACTATGGTTTTACATGCGACACATCTGGACAGGAC--AG-T-CAATTTACATACATCAA
gi|11 : GATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT
gi|13 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgGATTCAGTGAGCTCATAGTAACTGTATT--GTTTCATATAGGGAGAT-ACTAATTTCACAATAACGGAGT
gi|14 : AGATTTAGCCACCCGTTGGATCATGAAGATACAGTGAATT--TA-----TTTTTTTTATTTC
gi|15 : taaaGATAATTATTTGCGAACAAAC-AGACATAATTCTACGGACCAGTGTACG
gi|2 : tatattagATATATGTGGAGATAAAT----ATTTGTGAATAACCAAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCA--ATTAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA--CA-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACTGAATTTACGATTTGTGAG
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactatT-TATTT-GTGAATAACCAAGATATAAATGTACAGATCAGACTACGGCG--AGTGCACCTAGCTACAATGCAAACCATAGATACAATATCA-AGGCCTCTGCCAAACCAATA-ACTTTGGTTTCGACCATGACTTATATACCATGGAAT---------T--AC-ATGC-------AACACATCTGGAC-------AGGGTGGACA-AATTTACATACATGAAGTGATAGCTTTTT-AT------GAGTAGGATCCAGTTAAGGATTCATTACTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATA-----TATTTTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGCTCATTCACAATGCATGAT------------ATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTAtagtatatatatatatatatatatctgttaattattgttttg
gi|4 : CAAAGT-TATGATAGACGGACTATAATAAATATGTACACGCCTTCCAAATTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATACTATAGAATTACATGCAACACATCTGGACAGGGTGGA--CA-AATTTACATACATGAAGTGATAGCTTTATATGTGTAGGATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAA--GGAC
gi|4 : gtaccAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTGCAG--GTCCTTTATATA--GCAT-GTGCGT-AGTCATctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|4 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcatgactacgcacatgctatataaaggacctgcTATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGCCATATTTCATTACCATTTGACATACATGTATTTA--TA-TA-TATGGAGTGAATAACCAGG-CATAAATGTACAGATCAGACTACGGCG--AATGCGCCGAGTTACAATGCAAACCATAGACACAATATCA-AGGCCTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT-----ACAATGGATC----T--AC-ATGC-------AACATATCTGGAC-------TGGACGGACAGA-TTTACATACATGAGCTGATAG---TTTTATAC----GAGTAGGATCCAGTTAAGGATTCATGACAACTCATATGCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATA-----TATATTTAATTTCATAAAGGatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|6 : aTAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTAAATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA--CA-AATTTACATACATGAAGTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT
gi|7 : GTATATAATTTATTATATTT-GTGAAAAAACAA-ACATAAATCTACATACCAGACTGAGGCA--AGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCA-AGGCATCTATCAACCCAATAGAATTGG-TGTTAACAATGATTTATAT--CCT---ATGGTTT----T--ACAATAC-------AACACATCTGGAC-------TGGAGGGAC--A-CTTATATGCATGGACTGATAG---CTT---------GAGT-------------------------ACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCATAAAA-----------TCATA-----TGTATAT-ATTTCATAAAGGGATATTATTGAAATCACAACAACAGTATTTCCGATGTTTG
gi|8 : aAGACATAAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATGCAAACCAAGGACACAATACTATAG----------AATCAA------------------ATGACTTCTAA---AGGCAGCAG--TCTCTT--AC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGG--GACA-A-TTTACATACATGAACTGATACC--TTT-GTATGAATAAGTAAGATCAAGTAAAGGATTCATACTTATTCACATGCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-----AGAACTTTATTTCATAAAGGGAGATAATTGAAATCACAACAATGATACTTCCAAATATTGGAA----ATACAGATGCCAATTTAAAcgtatatatatgtcgtatttgatttttatc
gi|9 : ccGAGATGATT----ATTTGGGAATAACCAAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCA--ATAAATTTGCTGTCGACCATGACTGAAATACTACGAAATTACATGCAACACACCAGGACAGGGTG--G-CA-AATTAATAAACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA
Alignments
lowQualScore : 1 2222 11 3333333 11 333333333 111 11 2222222222222222222 2222222 22222 111 555555555 1111111 11111 1 1 77777777777 1111 111 11111 1111 11 1 1 1 11 1 222222 3333
lowQualScore : 5 1 3333 1 1 1 88 1111111 1 88 1 1 000000000 1 777 3 44 11 0 0 8 3 1 0 0 99999 5 22 8888888888888888888 8 8 6666666 00000 3 666 3 111111111 88 8888888 5 8888 0 3 1 1 1 1 1 44444 5 1 7 3 3 1 55 5 3 1 6 33333333333 2222 0 000 1 99 2 66666 8 1 7777 11 1 0 3 7 3 7 3 2 5 1 88 1 1 5 444444 6666 1 1 1 22
lowQualScore : . . .... . . . .. ....... . .. . . ......... . ... . .. .. . . . . . . . ..... . .. ................... . . ....... ..... . ... . ......... .. ....... . .... . . . . . . . ..... . . . . . . .. . . . . ........... .... . ... . .. . ..... . . .... .. . . . . . . . . . . .. . . . ...... .... . . . ..
lowQualScore : 0 0 5555 0 0 0 00 5555555 0 00 0 0 999999999 0 555 2 00 00 6 6 0 8 4 6 8 00000 0 44 0000000000000000000 0 0 0000000 00000 2 888 2 666666666 88 2222222 6 0000 8 7 8 0 0 8 0 33333 7 4 5 7 7 0 88 5 2 0 7 33333333333 1111 1 000 4 22 5 00000 0 0 0000 00 0 7 3 3 3 3 2 5 0 0 55 0 0 5 000000 5555 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGCTTT-TAC----GAGTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTAAATTCACAACAACGGNATTTCCGATTTTTGGGATCTTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCCTTTNCAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
Reference ( family-200 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAATGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGCTTTATA-----GAGTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTNCGATTTTTGGGATCTTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCCTTTNCAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|1 : TATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA------CATAAT--TTTCATATAAATAAATATAAGTTT--T-TATATA---TAAATA-CCATGA--TAACTCTACAGACCAGACTACGCCG--AGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCA-TGGGATCTACCAACCCAATATAATGTA-TGTCATCCATGACTTATAT--TATGCAATGG-T---TTTAT-ATGC-------AACATATATAGACTG-----GACGGAC-A-GTTTACATGTATGATCGGATAG-------------------ATC-------GGAT--ATGAGTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATA-----TGCA-TTT-ATTTCATAAAGGGAA------------ACAGCAACGGCATTTCCGATTTTTGGGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------AATATATATGGAGATATTT----ATTTGTGAATAACC-GGACAT---TATCCAACAGATCAGACTACGGCGAGCGCTTCTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCA--ATAGAATTAGGGTCAACCATGACTTATATACTATGGTTTTACATGCAACCCATCTGGAC----TGGAGCTACAATTTACATACATGAACTGATAGCTTTATATGAGAATGATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTGGTA-ATGTTA--TTCATAAAAGGAAACAATTAA------AACCACG------ACGGTTTTTGGGATCTTTTTCAGATATACGTT-CACAATCTATTATATATA---TATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGTGAACAACCAGATAAAAATTTACAGACCAGACTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|10 : acatttttgttgataatttctgtcattgttatgcatgtagacatttaaacttttaactactaacatagttttacggTT----AATTGTGCATAACCA-GATATAAATGT---TCAGACCAGACTACGGCGAGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCA--ATAGATTTGGTGGCAACCATGACTTATTTACTATGGTTTTACATGCGACACATCTGGACAGGAC--AGT-C-AATTTACATACATCAA
gi|11 : GATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAG
gi|13 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATTCAGTGAGCTCATAGTAACTGTA-TT--GTTTCATATAGGGAGAT-ACTAATTTCACAATAACGGAGT
gi|14 : AGATTTAGCCACCCGTTGGATCATGAAGATACAGTGAATTTAT------TTTT-TTT-ATTTC
gi|15 : taaaGATAATTATTTGCGAACAAACAGACATAATTCTACGGACCAGTGTACG
gi|2 : tatattagATATATGTGGAGATAAAT----ATTTGTGAATAACCAAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCA--ATTAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACTGAATTTACGATTTGTGAG
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactat--T-TATTTG---TGAATAACCAAGATATAAATGTACAGATCAGACTACGGCG--AGTGCACCTAGCTACAATGCAAACCATAGATACAATATCA-AGGCCTCTGCCAAACCAATA-ACTTTGGTTTCGACCATGACTTATATACCATGGAA--------TT-AC-ATGC-------AACACATCTGGACAG-----GGTGGACAA-ATTTACATACATGAAGTGATAGCTTTTTAT----GAGTAGGATCCAGTTAAGGATTCATTACTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATA-----TATT-TTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGCTCATTCACAATGCATGAT------------ATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTAtagtatatatatatatatatatatctgttaattattgttttg
gi|4 : CAAAGT-TATGATAGACGGACTATAATAAATATGTACACGCCTTCCAAATTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATACTATAGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGTGTAGGATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAA--GGAC
gi|4 : gtaccAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTGCAG--GTCCTTTATATA--GCA-TGTGCGT-AGTCATctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcTATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGCCATATTTCATTACCATTTGACATACATGTATTTA----T--A-TATATGGAGTGAATAACCAGG-CATAAATGTACAGATCAGACTACGGCG--AATGCGCCGAGTTACAATGCAAACCATAGACACAATATCA-AGGCCTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTAT-----ATACAATGGAT---CT-AC-ATGC-------AACATATCTGGACTG-----GACGGAC-AGATTTACATACATGAGCTGATAGTTTTATAC----GAGTAGGATCCAGTTAAGGATTCATGACAACTCATATGCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATA-----TATA-TTTAATTTCATAAAGGatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|6 : aTAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTAAATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT
gi|7 : GTATATAA-TTTATTATATTTG---TGAAAAAACAA-ACATAAATCTACATACCAGACTGAGGCA--AGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCA-AGGCATCTATCAACCCAATA-GAATTGGTGTTAACAATGATTTATAT--CCT---ATGGTT---TT-ACAATAC-------AACACATCTGGACTG-----GAGGGAC---ACTTATATGCATGGACTGATAGCTT---------GAGT-------------------------ACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCA-----------TAAAATCATA-----TGTA-TAT-ATTTCATAAAGGGATATTATTGAAATCACAACAACAGTATTTCCGATGTTTG
gi|8 : aAGACATAAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATGCAAACCAAGGACACAATACTATAG----------AATCAA------------------ATGACTTCTA---AAGGCAGCAG-TCTCTT-AC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGGGAC-A-ATTTACATACATGAACTGATACCTTTGTATGAATAAGTAAGATCAAGTAAAGGATTCATACTTATTCACATGCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-----AGAACTTT-ATTTCATAAAGGGAGATAATTGAAATCACAACAATGATACTTCCAAATATTGGAA----ATACAGATGCCAATTTAAAcgtatatatatgtcgtatttgatttttatc
gi|9 : ccGAGATGATT----ATTTGGGAATAACCAAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCA--ATAAATTTGCTGTCGACCATGACTGAAATACTACGAAATTACATGCAACACACCAGGACAGGGTG--GC-A-AATTAATAAACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA
Alignments
lowQualScore : 1 2222 11 3333333 11 333333333 111 11 3333333333333333333 2222222 22222 111 444444444444444444444444444444 11111 1 1 11 77777777777 1111 111 11111 1111 11 1 1 2 11 1 222222 3333
lowQualScore : 5 1 3333 1 1 1 88 1111111 1 88 1 1 000000000 1 777 3 44 11 0 0 8 3 1 0 0 99999 5 22 3333333333333333333 8 8 6666666 00000 3 666 444444444444444444444444444444 5 8888 0 3 1 1 1 1 1 44444 5 1 0 0 1 77 1 44 7 7 1 6 33333333333 2222 0 000 1 99 2 66666 8 1 7777 11 1 0 3 7 3 7 0 3 1 88 1 1 5 444444 6666 1 1 1 22
lowQualScore : . . .... . . . .. ....... . .. . . ......... . ... . .. .. . . . . . . . ..... . .. ................... . . ....... ..... . ... .............................. . .... . . . . . . . ..... . . . . . .. . .. . . . . ........... .... . ... . .. . ..... . . .... .. . . . . . . . . . .. . . . ...... .... . . . ..
lowQualScore : 0 0 5555 0 0 0 00 5555555 0 00 0 0 999999999 0 555 2 00 00 6 6 0 8 4 6 8 00000 0 44 8888888888888888888 0 0 0000000 00000 2 888 222222222222222222222222222222 6 0000 8 7 8 0 0 8 0 33333 7 4 8 8 8 22 0 00 3 3 0 7 33333333333 1111 1 000 4 22 5 00000 0 0 0000 00 0 7 3 3 3 3 8 3 0 55 0 0 5 000000 5555 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-TTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTTCAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
Reference ( family-200 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTAAATTCACAACAACGGNATTTCCGATTTTTGGGATCTTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCCTTTNCAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|1 : TATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA------CATAAT--TTTCATATAAATAAATATAAGTTT--T-TATATA---TAAATA-CCATGA--TAACTCTACAGACCAGACTACGCCG--AGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCA-TGGGATCTACCAACCCAATATAATGTA-TGTCATCCATGACTTATAT--TATGCAATGG-T---TTTAT-ATGC-------AACATATATAGACTG-----GACGGAC-A-GTTTACATGTATGATCGGATAG--------------------ATC-------GGAT--ATGAGTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATA-----TGCA-TTT-ATTTCATAAAGGGAA------------ACAGCAACGGCATTTCCGATTTTTGGGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------AATATATATGGAGATATTT----ATTTGTGAATAACC-GGACAT---TATCCAACAGATCAGACTACGGCGAGCGCTTCTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCA--ATAGAATTAGGGTCAACCATGACTTATATACTATGGTTTTACATGCAACCCATCTGGAC----TGGAGCTACAATTTACATACATGAACTGATAGCTTTATATGAGAATGATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTGGTA-ATGTTA--TTCATAAAAGGAAACAATTAA------AACCACG------ACGGTTTTTGGGATCTTTTTCAGATATACGTT-CACAATCTATTATATATA---TATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGTGAACAACCAGATAAAAATTTACAGACCAGACTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|10 : acatttttgttgataatttctgtcattgttatgcatgtagacatttaaacttttaactactaacatagttttacggTT----AATTGTGCATAACCA-GATATAAATGT---TCAGACCAGACTACGGCGAGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCA--ATAGATTTGGTGGCAACCATGACTTATTTACTATGGTTTTACATGCGACACATCTGGACAGGAC--AGT-C-AATTTACATACATCAA
gi|11 : GATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTTCAG
gi|13 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATTCAGTGAGCTCATAGTAACTGTA-TT--GTTTCATATAGGGAGAT-ACTAATTTCACAATAACGGAGT
gi|14 : AGATTTAGCCACCCGTTGGATCATGAAGATACAGTGAATTTAT------TTTT-TTT-ATTTC
gi|15 : taaaGATAATTATTTGCGAACAAACAGACATAATTCTACGGACCAGTGTACG
gi|2 : tatattagATATATGTGGAGATAAAT----ATTTGTGAATAACCAAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCA--ATTAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACTGAATTTACGATTTGTGAG
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactat--T-TATTTG---TGAATAACCAAGATATAAATGTACAGATCAGACTACGGCG--AGTGCACCTAGCTACAATGCAAACCATAGATACAATATCA-AGGCCTCTGCCAAACCAATA-ACTTTGGTTTCGACCATGACTTATATACCATGGAA--------TT-AC-ATGC-------AACACATCTGGACAG-----GGTGGACAA-ATTTACATACATGAAGTGATAGCTTTT-TATGA----GTAGGATCCAGTTAAGGATTCATTACTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATA-----TATT-TTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGCTCATTCACAATGCATGAT------------ATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTAtagtatatatatatatatatatatctgttaattattgttttg
gi|4 : CAAAGT-TATGATAGACGGACTATAATAAATATGTACACGCCTTCCAAATTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATACTATAGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGTGTAGGATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAA--GGAC
gi|4 : gtaccAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTGCAG--GTCCTTTATATA--GCA-TGTGCGT-AGTCATctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcTATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGCCATATTTCATTACCATTTGACATACATGTATTTA----T--A-TATATGGAGTGAATAACCAGG-CATAAATGTACAGATCAGACTACGGCG--AATGCGCCGAGTTACAATGCAAACCATAGACACAATATCA-AGGCCTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTAT-----ATACAATGGAT---CT-AC-ATGC-------AACATATCTGGACTG-----GACGGAC-AGATTTACATACATGAGCTGATAGT-TTTATACGA----GTAGGATCCAGTTAAGGATTCATGACAACTCATATGCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATA-----TATA-TTTAATTTCATAAAGGatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|6 : aTAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTAAATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCAT-ATATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT
gi|7 : GTATATAA-TTTATTATATTTG---TGAAAAAACAA-ACATAAATCTACATACCAGACTGAGGCA--AGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCA-AGGCATCTATCAACCCAATA-GAATTGGTGTTAACAATGATTTATAT--CCT---ATGGTT---TT-ACAATAC-------AACACATCTGGACTG-----GAGGGAC---ACTTATATGCATGGACTGATAGC-TT-----GA----GT-------------------------ACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCA-----------TAAAATCATA-----TGTA-TAT-ATTTCATAAAGGGATATTATTGAAATCACAACAACAGTATTTCCGATGTTTG
gi|8 : aAGACATAAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATGCAAACCAAGGACACAATACTATAG----------AATCAA------------------ATGACTTCTA---AAGGCAGCAG-TCTCTT-AC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGGGAC-A-ATTTACATACATGAACTGATACC-TTTGTATGAATAAGTAAGATCAAGTAAAGGATTCATACTTATTCACATGCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-----AGAACTTT-ATTTCATAAAGGGAGATAATTGAAATCACAACAATGATACTTCCAAATATTGGAA----ATACAGATGCCAATTTAAAcgtatatatatgtcgtatttgatttttatc
gi|9 : ccGAGATGATT----ATTTGGGAATAACCAAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCA--ATAAATTTGCTGTCGACCATGACTGAAATACTACGAAATTACATGCAACACACCAGGACAGGGTG--GC-A-AATTAATAAACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA
Alignments
lowQualScore : 1 2222 11 3333333 11 333333333 111 11 3333333333333333333 2222222 22222 111 444444444444444444444444444444 11111 1 11 222 77777777777 1111 111 11111 1111 11 1 1 1 11 1 222222 3333
lowQualScore : 5 1 3333 1 1 1 88 1111111 1 88 1 1 000000000 1 777 3 44 11 0 0 8 3 1 0 0 99999 5 22 3333333333333333333 8 8 6666666 00000 3 666 444444444444444444444444444444 5 8888 0 3 1 1 1 1 1 44444 5 1 11 1 44 1 444 7 1 6 33333333333 2222 5 000 1 99 2 66666 8 1 7777 11 1 0 3 7 3 7 0 3 88 1 1 5 444444 6666 1 1 1 22
lowQualScore : . . .... . . . .. ....... . .. . . ......... . ... . .. .. . . . . . . . ..... . .. ................... . . ....... ..... . ... .............................. . .... . . . . . . . ..... . . .. . .. . ... . . . ........... .... . ... . .. . ..... . . .... .. . . . . . . . . .. . . . ...... .... . . . ..
lowQualScore : 0 0 5555 0 0 0 00 5555555 0 00 0 0 999999999 0 555 2 00 00 6 6 0 8 4 6 8 00000 0 44 8888888888888888888 0 0 0000000 00000 2 888 222222222222222222222222222222 6 0000 8 7 8 0 0 8 0 33333 7 4 66 4 88 0 777 3 0 7 33333333333 1111 0 000 4 22 5 00000 0 0 0000 00 0 7 3 3 3 3 8 3 55 0 0 5 000000 5555 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
Reference ( family-200 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-TTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|1 : TATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA------CATAAT--TTTCATATAAATAAATATAAGTTT--T-TATATA---TAAATA-CCATGA--TAACTCTACAGACCAGACTACGCCG--AGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCA-TGGGATCTACCAACCCAATATAATGTA-TGTCATCCATGACTTATAT--TATGCAATGG-T---TTTAT-ATGC-------AACATATATAGACTG-----GACGGAC-A-GTTTACATGTATGATCGGATAG--------------------ATC-------GGAT--ATGAGTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATA-----TGCA-TTT-ATTTCATAAAGGGAAA------------CAGCAACGGCATTTCCGATTTTTGGGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------AATATATATGGAGATATTT----ATTTGTGAATAACCG-GACAT---TATCCAACAGATCAGACTACGGCGAGCGCTTCTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCA--ATAGAATTAGGGTCAACCATGACTTATATACTATGGTTTTACATGCAACCCATCTGGAC----TGGAGCTACAATTTACATACATGAACTGATAGCTTTATATGAGAATGATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTGGTA-ATGTTA--TTCATAAAAGGAAACAATTAAA------ACCACG------ACGGTTTTTGGGATCTTTTTCAGATATACGTT-CACAATCTATTATATATA---TATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGTGAACAACCAGATAAAAATTTACAGACCAGACTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|10 : acatttttgttgataatttctgtcattgttatgcatgtagacatttaaacttttaactactaacatagttttacggTT----AATTGTGCATAACCA-GATATAAATGT---TCAGACCAGACTACGGCGAGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCA--ATAGATTTGGTGGCAACCATGACTTATTTACTATGGTTTTACATGCGACACATCTGGACAGGAC--AGT-C-AATTTACATACATCAA
gi|11 : GATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAG
gi|13 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATTCAGTGAGCTCATAGTAACTGTA-TT--GTTTCATATAGGGAGAT-ACTAATTTCACAATAACGGAGT
gi|14 : AGATTTAGCCACCCGTTGGATCATGAAGATACAGTGAATTTAT------TTTT-TTT-ATTTC
gi|15 : taaaGATAATTATTTGCGAACAAACAGACATAATTCTACGGACCAGTGTACG
gi|2 : tatattagATATATGTGGAGATAAAT----ATTTGTGAATAACCAAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCA--ATTAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCATA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACTGAATTTACGATTTGTGAG
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactat--T-TATTTG---TGAATAACCAAGATATAAATGTACAGATCAGACTACGGCG--AGTGCACCTAGCTACAATGCAAACCATAGATACAATATCA-AGGCCTCTGCCAAACCAATA-ACTTTGGTTTCGACCATGACTTATATACCATGGAA--------TT-AC-ATGC-------AACACATCTGGACAG-----GGTGGACAA-ATTTACATACATGAAGTGATAGCTTTT-TATGA----GTAGGATCCAGTTAAGGATTCATTACTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATA-----TATT-TTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTTCAGATGCTCATTCACAATGCATGAT------------ATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTAtagtatatatatatatatatatatctgttaattattgttttg
gi|4 : CAAAGT-TATGATAGACGGACTATAATAAATATGTACACGCCTTCCAAATTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATACTATAGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGTGTAGGATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAA--GGAC
gi|4 : gtaccAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTG-CAG--GTCCTTTATATA--GCA-TGTGCGT-AGTCATctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcTATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGCCATATTTCATTACCATTTGACATACATGTATTTA----T--A-TATATGGAGTGAATAACCAGG-CATAAATGTACAGATCAGACTACGGCG--AATGCGCCGAGTTACAATGCAAACCATAGACACAATATCA-AGGCCTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTAT-----ATACAATGGAT---CT-AC-ATGC-------AACATATCTGGACTG-----GACGGAC-AGATTTACATACATGAGCTGATAGT-TTTATACGA----GTAGGATCCAGTTAAGGATTCATGACAACTCATATGCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATA-----TATA-TTTAATTTCATAAAGGatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|6 : aTAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTAAATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCATA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT
gi|7 : GTATATAA-TTTATTATATTTG---TGAAAAAACAA-ACATAAATCTACATACCAGACTGAGGCA--AGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCA-AGGCATCTATCAACCCAATA-GAATTGGTGTTAACAATGATTTATAT--CCT---ATGGTT---TT-ACAATAC-------AACACATCTGGACTG-----GAGGGAC---ACTTATATGCATGGACTGATAGC-TT-----GA----GT-------------------------ACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCA-----------TAAAATCATA-----TGTA-TAT-ATTTCATAAAGGGATATTATTGAAATCACAACAACAGTATTTCCGATGTTTG
gi|8 : aAGACATAAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATGCAAACCAAGGACACAATACTATAG----------AATCAA------------------ATGACTTCTA---AAGGCAGCAG-TCTCTT-AC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGGGAC-A-ATTTACATACATGAACTGATACC-TTTGTATGAATAAGTAAGATCAAGTAAAGGATTCATACTTATTCACATGCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-----AGAACTTT-ATTTCATAAAGGGAGATAATTGAAATCACAACAATGATACTTCCAAATATTGGAA----ATACAGATGCCAATTTAAAcgtatatatatgtcgtatttgatttttatc
gi|9 : ccGAGATGATT----ATTTGGGAATAACCAAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCA--ATAAATTTGCTGTCGACCATGACTGAAATACTACGAAATTACATGCAACACACCAGGACAGGGTG--GC-A-AATTAATAAACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA
Alignments
lowQualScore : 1 2222 11 3333333 11 333333333 111 11 3333333333333333333 2222222 22222 111 444444444444444444444444444444 11111 1 11 222 77777777777 1111 111 11111 1111 11 1 1 1 11 1 222222 3333
lowQualScore : 5 1 3333 1 1 1 88 1111111 1 88 1 1 000000000 1 777 3 44 11 0 0 8 3 1 0 0 99999 5 22 3333333333333333333 8 8 6666666 00000 3 666 444444444444444444444444444444 5 8888 0 3 1 1 1 1 1 44444 5 1 11 1 44 1 444 7 1 6 33333333333 2222 5 000 1 99 2 66666 8 1 7777 11 1 0 3 7 3 7 0 3 88 1 1 5 444444 6666 1 1 1 22
lowQualScore : . . .... . . . .. ....... . .. . . ......... . ... . .. .. . . . . . . . ..... . .. ................... . . ....... ..... . ... .............................. . .... . . . . . . . ..... . . .. . .. . ... . . . ........... .... . ... . .. . ..... . . .... .. . . . . . . . . .. . . . ...... .... . . . ..
lowQualScore : 0 0 5555 0 0 0 00 5555555 0 00 0 0 999999999 0 555 2 00 00 6 6 0 8 4 6 8 00000 0 44 8888888888888888888 0 0 0000000 00000 2 888 222222222222222222222222222222 6 0000 8 7 8 0 0 8 0 33333 7 4 66 4 88 0 333 3 0 7 33333333333 1111 0 000 4 22 5 00000 0 0 0000 00 0 7 3 3 3 3 8 3 55 0 0 5 000000 5555 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
Reference ( family-200 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|1 : TATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA------CATAAT--TTTCATATAAATAAATATAAGTTT--T-TATATA---TAAATA-CCATGA--TAACTCTACAGACCAGACTACGCCG--AGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCA-TGGGATCTACCAACCCAATATAATGTA-TGTCATCCATGACTTATAT--TATGCAATGG-T---TTTAT-ATGC-------AACATATATAGACTG-----GACGGAC-A-GTTTACATGTATGATCGGATAG--------------------ATC-------GGAT--ATGAGTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATA-----TGCA-TTT-ATTTCATAAAGGGAAA------------CAGCAACGGCATTTCCGATTTTTGGGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------AATATATATGGAGATATTT----ATTTGTGAATAACCG-GACAT---TATCCAACAGATCAGACTACGGCGAGCGCTTCTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCA--ATAGAATTAGGGTCAACCATGACTTATATACTATGGTTTTACATGCAACCCATCTGGAC----TGGAGCTACAATTTACATACATGAACTGATAGCTTTATATGAGAATGATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTGGTA-ATGTTA--TTCATAAAAGGAAACAATTAAA------ACCACG------ACGGTTTTTGGGATCTTTTTCAGATATACGTT-CACAATCTATTATATATA---TATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGTGAACAACCAGATAAAAATTTACAGACCAGACTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|10 : acatttttgttgataatttctgtcattgttatgcatgtagacatttaaacttttaactactaacatagttttacggTT----AATTGTGCATAACCA-GATATAAATGT---TCAGACCAGACTACGGCGAGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAACCA--ATAGATTTGGTGGCAACCATGACTTATTTACTATGGTTTTACATGCGACACATCTGGACAGGAC--AGT-C-AATTTACATACATCAA
gi|11 : GATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAG
gi|13 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATTCAGTGAGCTCATAGTAACTGTA-TT--GTTTCATATAGGGAGAT-ACTAATTTCACAATAACGGAGT
gi|14 : AGATTTAGCCACCCGTTGGATCATGAAGATACAGTGAATTTAT------TTTT-TTT-ATTTC
gi|15 : taaaGATAATTATTTGCGAACAAACAGACATAATTCTACGGACCAGTGTACG
gi|2 : tatattagATATATGTGGAGATAAAT----ATTTGTGAATAACCAAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCA--ATTAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCATA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACTGAATTTACGATTTGTGAG
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactat--T-TATTTG---TGAATAACCAAGATATAAATGTACAGATCAGACTACGGCG--AGTGCACCTAGCTACAATGCAAACCATAGATACAATATCA-AGGCCTCTGCCAAACCAATA-ACTTTGGTTTCGACCATGACTTATATACCATGGAA--------TT-AC-ATGC-------AACACATCTGGACAG-----GGTGGACAA-ATTTACATACATGAAGTGATAGCTTTT-TATGA----GTAGGATCCAGTTAAGGATTCATTACTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATA-----TATT-TTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTTCAGATGCTCATTCACAATGCATGAT------------ATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTAtagtatatatatatatatatatatctgttaattattgttttg
gi|4 : CAAAGT-TATGATAGACGGACTATAATAAATATGTACACGCCTTCCAAATTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATACTATAGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGTGTAGGATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAA--GGAC
gi|4 : gtaccAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTG-CAG--GTCCTTTATATA--GCA-TGTGCGT-AGTCATctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcTATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGCCATATTTCATTACCATTTGACATACATGTATTTA----T--A-TATATGGAGTGAATAACCAGG-CATAAATGTACAGATCAGACTACGGCG--AATGCGCCGAGTTACAATGCAAACCATAGACACAATATCA-AGGCCTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTAT-----ATACAATGGAT---CT-AC-ATGC-------AACATATCTGGACTG-----GACGGAC-AGATTTACATACATGAGCTGATAGT-TTTATACGA----GTAGGATCCAGTTAAGGATTCATGACAACTCATATGCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATA-----TATA-TTTAATTTCATAAAGGatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|6 : aTAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTAAATACTATGGAATTACATGCAACACATCTGGACAGGGTGGA-C-A-AATTTACATACATGAAGTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCATA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT
gi|7 : GTATATAA-TTTATTATATTTG---TGAAAAAACAA-ACATAAATCTACATACCAGACTGAGGCA--AGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCA-AGGCATCTATCAACCCAATA-GAATTGGTGTTAACAATGATTTATAT--CCT---ATGGTT---TT-ACAATAC-------AACACATCTGGACTG-----GAGGGAC---ACTTATATGCATGGACTGATAGC-TT-----GA----GT-------------------------ACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCA-----------TAAAATCATA-----TGTA-TAT-ATTTCATAAAGGGATATTATTGAAATCACAACAACAGTATTTCCGATGTTTG
gi|8 : aAGACATAAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATGCAAACCAAGGACACAATACTATAG----------AATCAA------------------ATGACTTCTA---AAGGCAGCAG-TCTCTT-AC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGGGAC-A-ATTTACATACATGAACTGATACC-TTTGTATGAATAAGTAAGATCAAGTAAAGGATTCATACTTATTCACATGCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-----AGAACTTT-ATTTCATAAAGGGAGATAATTGAAATCACAACAATGATACTTCCAAATATTGGAA----ATACAGATGCCAATTTAAAcgtatatatatgtcgtatttgatttttatc
gi|9 : ccGAGATGATT----ATTTGGGAATAACCAAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCA--ATAAATTTGCTGTCGACCATGACTGAAATACTACGAAATTACATGCAACACACCAGGACAGGGTG--GC-A-AATTAATAAACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATt
blockSeqs : . T . A C T AC CATATTT T CA G C ATTTATTA T GAG A AT CC T C G ACTT G GA AAAGGCAGCAGTCTC . A GTCTAGA TCACT T AA CTTTGTATGAATAAGTAAGATCAAGTAAA T TACT G T G G A C GTAAC C A TA A TT A TC A T G AGACGGACTAT TCCA A . C AT G GTC T T . . T . T . A . . C T A GCA AGT A T T TG
blockSeqs : TA A . A AC . . C G AATT G GA ATACCATGGAA . . . . C AG CTTTTTATGAGTAGGATCCAGTTAA T GACA G T T G T T . . A TT A AT A . A C . . . A . T . G GCA . G . . G . T . A .
blockSeqs : T . A AC . . A A GAAT G AA ATACAATGGAT . . . . G A TTTTATACGAGTAGGATCCAGTTAA T ACTT G C T G G T . . . TA G AA T . A . T . G CA . A . . T
blockSeqs : C . . . . . . . ATCCTATGGTT . . . . G . CTTGAGT . . A T A T A T . . . T G AA T . A . T . . CA . T . .
blockSeqs : . . G A . A . . . . A . T . . CA
blockSeqs : A . . . . . . T
blockSeqCons : AC AATT* ATACNATGGAT******** G** CTTTGTACGAGTAGGATCAGTAA******* TA AN *** CA*** **** **
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATA-AATTTGGTGTCGACCATGACTTATAT--CATGCAACGG-T---TT-AC-ATGC-------AACACATCTGGACTG-----GACGGAC-A-ATTTACATACATGAACTGATAGC-TTT-TACGA----GTAGGATCCAGTTAAGGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGAGC-A-AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCA-AGGCNTCTGCCAAACCAATAAATT-TGGTGTCGACCATGACTTATATACNATGGAT--------TT-AC-ATGC-------AACACATCTGGACTG-----GACGGACG--ATTTACATACATGAACTGATAGCTTTGTACGAGTAGGATCAGTAA-------GGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCA--ATAAATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGACA---AATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA
Alignments
lowQualScore : 1 2222 11 3333333 11 222222222 111 111111 11111 2222222 11111 22 7777777777777777777777777777 11111 1 11 222 77777777777 1111 111 11 1111 11 1 1 1 11 1 222222 3333
lowQualScore : 5 1 3333 1 1 1 88 1111111 1 88 1 1 444444444 1 444 0 7777 2 99 7 55 2 6 999 0 888888 1 99999 6 1111111 66666 1 22 3 0000000000000000000000000000 5 8888 0 3 1 1 1 1 1 44444 5 1 11 1 44 1 444 7 1 6 33333333333 4444 111 3 11 1 0 0 8 1 7777 11 1 0 3 7 3 7 0 3 88 1 1 5 444444 6666 1 1 1 22
lowQualScore : . . .... . . . .. ....... . .. . . ......... . ... . .... . .. . .. . . ... . ...... . ..... . ....... ..... . .. . ............................ . .... . . . . . . . ..... . . .. . .. . ... . . . ........... .... ... . .. . . . . . .... .. . . . . . . . . .. . . . ...... .... . . . ..
lowQualScore : 0 0 5555 0 0 0 00 5555555 0 00 0 0 999999999 0 000 8 2222 5 22 2 88 2 7 888 7 333333 0 22222 7 7777777 77777 0 33 2 8888888888888888888888888888 6 0000 8 7 8 0 0 8 0 33333 7 4 66 4 88 0 333 3 0 7 33333333333 2222 777 3 00 4 8 8 0 0 0000 00 0 7 3 3 3 3 8 3 55 0 0 5 000000 5555 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATTTG---TGAATAACCAAGACATAAATNTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCAAGGCATCTACCAAAC-CAATA-AATTTGGTGTCGACCATGACTTATAT---A--CNATGGTT---TTAC-ATGC-------AACACATCTGGACTG-----GACGGAC-AATTTACATACATGAACTGATAGCTTT-TACGA----GTAGGATCCA-GTTAA-GGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA--AATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGACAAATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
Reference ( family-200 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACAGTTGNTCTACGATATGGTATAANACCANATCANCAGTACCGCNATATTTCATNACCATTTNACATANATGTATATAA-TTT--T-TATNTG---TGAATAACCAAGACATAAATCTACAGACCAGACTACGGCG--AGCGCGCCTAGCTACAATGCAAACCATAGACACAATATCAAGGCNTCTGCCAAAC-CAATA-AATTTGGTGTCGACCATGACTTATAT---A--CNATGGAT---TTAC-ATGC-------AACACATCTGGACTG-----GACGGAC-GATTTACATACATGAACTGATAGCTTTGTACGA----GTAGGAT-CA-G-TAA-GGATTCATGACTACTCACATGCTATATAAAGGACAGATTTAGAAACCCGTTGGATCATGAAGATACAGTGAANTCATA-----TGTA-TTT-ATTTCATAAAGGGAGATAATTGAANTCACAACAACGGNATTTCCGATTTTTGGGAT-CTTTACAGATGCNCATTCAAAATGTATGATA-ACG------AATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGCGCGCCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA--AATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGACAAATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACNCAC----ATGCTATATAAA--GGACANATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCGTA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAGATGTNCNTTACACAATNCATTGTGCGTAAGTCATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGCGAACAANCAGACANAANTCTACGGACCAGNNTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|1 : TATACAGTTAGTCTACGATATGGTATAATACCAAATCAACAGT--CACA------CATAAT--TTTCATATAAATAAATATAAGTTT--T-TATATA---TAAATA-CCATGA--TAACTCTACAGACCAGACTACGCCG--AGCGCGTCTTGCTACAATGCCAACTATAGACACAAGACCATGGGATCTACCAACC-CAATATAATGTA-TGTCATCCATGACTTATATTATG--CAATGGTT---TTAT-ATGC-------AACATATATAGACTG-----GACGGAC-AGTTTACATGTATGATCGGATAG-------------------AT-C--------GGAT--ATGAGTAC------GCTATATAGAGGACAAACATAGAAACCCTTTGGATCATGAAGATACAGTGAAACCATA-----TGCA-TTT-ATTTCATAAAGGGAAA------------CAGCAACGGCATTTCCGATTTTTGGGATATTTTAC-GATGTACATTCAAAATGTATGATATACA------AATATATATGGAGATATTT----ATTTGTGAATAACCG-GACAT---TATCCAACAGATCAGACTACGGCGAGCGCTTCTAGATACAATGTAAACCATGGGCACAAGATGAAGGCATCTACCAAACCAATA--GAATTAGGGTCAACCATGACTTATATACTATGGTTTTACATGCAACCCATCTGGACTGGAGCTACAA-TTTACATACATGAACTGATAGCTTTATATGAGAATGATCCAG-TTAAGGATTCATAACTACCCACCCATACGCTATATAAAATGAACAAATATAAAAGCCCGTTGGATCATAAAGATACAGTGAAATCGTGGTA-ATGTTA--TTCATAAAAGGAAACAATTAAA------ACCACG------ACGGTTTTTGGGATCTTTTTCAGATATACGTT-CACAATCTATTATATATA---TATATACCAAATGTATGTGTTTGGTAGAGGACTTGATTTTGTATCTATAGTATGGCGATAATTATTTGTGAACAACCAGATAAAAATTTACAGACCAGACTACGGCAAGCACTTCTAGTTACAATGCAAAAACCACAGGCACAAGATGAAGGCATCTAACAAACCAATATAATATATATTTATAACCCCATTGTTATATAAGTAC
gi|10 : acatttttgttgataatttctgtcattgttatgcatgtagacatttaaacttttaactactaacatagttttacgg--T-TAATTG---TGCATAACCA-GATATAAATGTTCAGACCAGACTACGGCG--AGCGCGTCTAGCTACAATGCAAACCACAGACACAATATCAAAGCATCTATCAAAC-CAATA-GATTTGGTGGCAACCATGACTTATTT---A--CTATGGTT---TTAC-ATGC-------GACACATCTGGACAG-----GACAGTC-AATTTACATACATCAA
gi|11 : GATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTT-CAG
gi|13 : agtttaaaaaacttcatttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATTCAGTGAGCTCATAGTAACTGTA-TT--GTTTCATATAGGGAGAT-ACTAATTTCACAATAACGGAGT
gi|14 : AGATTTAGCCACCCGTTGGATCATGAAGATACAGTGAATTTAT------TTTT-TTT-ATTTC
gi|15 : taaaGATAATTATTTGCGAACAAACAGACATAATTCTACGGACCAGTGTACG
gi|2 : tatattagATATATGTGGAGATAAAT----ATTTGTGAATAACCAAGATATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAAATACAATATCAAGGCCTCTGCCAAACCAATT--AATTTGGTGTCGACCATGACTTATATACTATGGAATTACATGCAACACATCTGGACAGGGTGGACAAATTTACATACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATCCATGACTACTCAC----ATGCTATATAAA--GGACATATTTATAAACCCGTTGGATCATATAGATACAGTGAATTCATA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACTGAATTTACGATTTGTGAG
gi|3 : ataaaaataaacgaacgatttatgttacattgtatttacagtaaaacctgttcaaactat--T-TATTTG---TGAATAACCAAGATATAAATGTACAGATCAGACTACGGCG--AGTGCACCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAAC-CAATA-ACTTTGGTTTCGACCATGACTTATAT---A--CCATGGAA---TTAC-ATGC-------AACACATCTGGACAG-----GGTGGACAAATTTACATACATGAAGTGATAGCTTTTTATGA----GTAGGATCCA-GTTAA-GGATTCATTACTACTCACATGCTTTATAAAGGACAGATTTATAAACCCGTTGGATCATATAGACACAGTGAATTCATA-----TATT-TTTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT-CTTTTCAGATGCTCATTCACAATGCATGAT------------ATATATATGGAGATAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTAtagtatatatatatatatatatatctgttaattattgttttg
gi|4 : CAAAGT-TATGATAGACGGACTATAATAAATATGTACACGCCTTCCAAATTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCGCCTAGCTACAATGCAAACCATAGATATAATATCAAGGCCTCTACCAAACCAATATAAATTTGGTGTCGACCATGACTTATATACTATAGAATTACATGCAACACATCTGGACAGGGTGGACAAATTTACATACATGAAGTGATAGCTTTATATGTGTAGGATCCAGTTTAAAGATTCATGACTACGCAC----ATGCTATATAAA--GGAC
gi|4 : gtaccAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGATCTTTG-CAG--GTCCTTTATATA--GCA-TGTGCGT-AGTCATctgcaaagatcccaaaaatcgtaaattccgttgttgtgaatttaattatctatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|5 : gtacccaaagttatgatagacggactataataaatatgtacacgccttccaaattgtgaataaccaagacataaatgtacagaccagactacggcgagtgcgcctagctacaatgcaaaccatagatataatatcaaggcctctaccaaaccaatataaatttggtgtcgaccatgacttatatactatagaattacatgcaacacatctggacagggtggacaaatttacatacatgaagtgatagctttatatgtgtaggatccagtttaaagattcTATATA-TTGTTTTATGATA----ATAAAATTACATCATTAGTACCGCCATATTTCATTACCATTTGACATACATGTATTTA----T--A-TATATGGAGTGAATAACCAGG-CATAAATGTACAGATCAGACTACGGCG--AATGCGCCGAGTTACAATGCAAACCATAGACACAATATCAAGGCCTCTGCCAAAC-CAATA-AATTTGGTGTCGACCATGACTTATAT---A--CAATGGAT---CTAC-ATGC-------AACATATCTGGACTG-----GACGGACAGATTTACATACATGAGCTGATAGTTTTATACGA----GTAGGATCCA-GTTAA-GGATTCATGACAACTCATATGCTATATAAAGGACAGATCTATAAACCCGTTGGATCATAGAGATACAGTGAATTCATA-----TATA-TTTAATTTCATAAAGGatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg
gi|6 : aTAATT----ATTTGTGAATAACCAAGACATAAATGT---ACAGACCAGACTACGGCGAGTGCATCTAGCTACAATGCAAACCATAGATACAATATCAAGGCCTCTGCCAAACCAATA--AATTTGGTGTCGACCATGACTTAAATACTATGGAATTACATGCAACACATCTGGACAGGGTGGACAAATTTACATACATGAAGTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGATTCATGACTACACAC----ATGCTATATTAA--GGACAGATTTATAAACCCATTGGATCATATAGATACAGTGAATTCATA-TATAT-TTAATTTCATAAAGGGAGATAATTAAATTCACAACAACGGAATTTACGATTTTTGGGAT
gi|7 : GTATATAA-TTTATTATATTTG---TGAAAAAACAA-ACATAAATCTACATACCAGACTGAGGCA--AGCTCGCCGAGCTACAATGCAAACTATGGACATCAGATCAAGGCATCTATCAACC-CAATA-GAATTGGTGTTAACAATGATTTATAT---C--CTATGGTT---TTACAATAC-------AACACATCTGGACTG-----GAGGGAC--ACTTATATGCATGGACTGATAGCTT-----GA----GT---------------------------ACTCACATGCTATATAAAGGACCAATTTAAAAACTCTTTGGATCA-----------TAAAATCATA-----TGTA-TAT-ATTTCATAAAGGGATATTATTGAAATCACAACAACAGTATTTCCGATGTTTG
gi|8 : aAGACATAAATCTATAGACCAGAATACAGTGCCAGCTTGCCTATCTACAATG-------------CAA-ACCAAGG----------ACACAATA-C-TATAGAATCAA--ATGACTTCTAA---AGGCAGCAG-TCTCTTAC-ATGCGTCTAGAAACACGTCGGGACTGTCACTAAGGGAC-AATTTACATACATGAACTGATACCTTTGTATGAATAAGTAAGAT-CAAG-TAAAGGATTCATACTTATTCACATGCTAAAAAAAGGGCA----TAGAAGCACATTGGATCATGAAGATACAGTATAATCAGA-----AGAACTTT-ATTTCATAAAGGGAGATAATTGAAATCACAACAATGATACTTCCAAATATTGGAA----ATACAGATGCCAATTTAAAcgtatatatatgtcgtatttgatttttatc
gi|9 : ccGAGATGATT----ATTTGGGAATAACCAAGACATAAATGT---ATAGACCAGACTACGGCAAGTGCGCCTAGCTACAATGCAAACCATAGATGCAATATCAAGGTCTCTGCCAAACCAATA--AATTTGCTGTCGACCATGACTGAAATACTACGAAATTACATGCAACACACCAGGACAGGGTGG-CAAATTAATAAACATGAACTGATAGCTTTATATGAGTAGGATCCAG-TTAAGGAGTCATGACTACTCAC----ATGCTATATAAA--GGACATATt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TAAATGTGAAACAGGACAATGTGATGTCAGTTGAATGCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
Unaligned ( gi|16 ): AGTATATAATATTACAAGGACTGTGAACAATATTGGCGTATGGCA