lowQualScore : 11111111111111111111111111111111111111111 1111111111111
lowQualScore : 333 1111111111111 22222222222 1 1111111111 2222 1 11 1 111111 11 111 333333333 11 55555555555555555555 2 444444444444444444 1 33333333333333333333333333333333333333333 22222222 55555555555 2222222222222
lowQualScore : 444 6 1 3333333333333 33 00000000000 7 3 4 3333333333 5 2222 3 4 55 2 77 5 222222 33 222 555555555 88 0 11111111111111111111 6 1 777777777777777777 0 3 0 3 6 33333333333333333333333333333333333333333 0 1 6 99999999 2 88 444 55555555555 6 4444444444444 6
lowQualScore : ... . . ............. .. ........... . . . .......... . .... . . .. . .. . ...... .. ... ......... .. . .................... . . .................. . . . . . ......................................... . . . ........ . .. ... ........... . ............. .
lowQualScore : 555 7 4 0000000000000 44 00000000000 1 1 5 5555555555 1 0000 6 3 00 3 00 0 777777 88 222 222222222 00 8 88888888888888888888 6 6 666666666666666666 2 2 0 2 0 33333333333333333333333333333333333333333 7 0 0 77777777 5 55 555 00000000000 0 0000000000000 0
consensus : ATCAAGNTGGTTA-AAAGTACTGATA--GCCGG-----GCTTTA-ATAA---AT----ATTCATACGCCTT-CCTAAT----------TTGATTGAT-ATTA-TTGTA--GCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGNNACAT-ATACAATGTCNNCAATATATTTTTATTTTNTTGNTTGNTTCGGCTTGCATATATAAAATACAT-G--A-NAAAATG--ATACTTGAGG-AATAAAAAGTAGTCCCTGTCGCGTATG---AT----------NTCG-----ACA-TGCGAAGC-TNATCACGACGACGTAAGCAG-G-GC--NGANCCNGNCNAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
Reference ( gi|3 ) : ATCAATTTAATTA-AGAGTACTGATA--GTCGG-----ACTTTA-ATAA---GT----ATTCCTACGCCTT-CTTAAT----------TTAATTAAC-ATTA-TTATA--GCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AATATCTCA--ATACAATGTCTGCAATATATTTTTATTTTTTTATTTTTTTTGGCTTGCTTATATTAAATACAC-G--A-CAAAATG--CTACTTGAGG-AATAAAAAGTAGTCCCTGTTGCGTA-----AT----------ATCA-----ACACTGCAAATCTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATCTATTTTATCCTTCT
gi|10 : ATCAAAGTAGCTA-AAAGTACTGATA--GCCGA-----CCTTTA-ATAAAAAGC----ATCC----GCCTG-ACTAAT----------TTGATTGAT-ATTG-TTGTA--GCATTTGGTTTATTCTATGCA
gi|8 : ATCAAGT-GGTTG-AAAGTAGTGACA--GCCGG-----ACTTGG-ATAA---AT----ATTCATACACCTT-CCTATG----------TTG-------ATTA-TTGTA--GCATTTGG-TTATTTTATGCAACA
gi|4 : atgtaATTA-AAAGTTCTGGTA--GACCA-----ATTTTG-AT------C----ATTCATATACCTT-CCTAAT----------TCAATTCAT-ATCA-TTATA--GCATTTGGTTAATT-TATGAAACA--TTT--TTAATA-AATGACATA--TTACAAAGTCCTCAATATATTTTTA--TTATTGTTTGATTTG--TTGCTTAAATAAAATACAT-G--A-AAAAATA--A-AATTGAGGTTATAAAAAATAGTCCCTGtaat
gi|5 : aaagtATTAGAAAGTACAAATA--GACGG--------TT----------T----CCTCATACACCTT-CATAAA----------TTGATTGAT-ATCA-TAATA--GCCGTTGGTTTATTTTGTT-----ATTTT--CTGA-T-AA-ATGACAT-ATACAATGTCAGATATATATTTCTAGTTTCT-----------GCTTGCATATAAAAAAAACAT-GAAA-TAAAATG--
gi|13 : tcaaagtTTA-AGA-TCCTGATGTTGCTGG-----GCTTTG-ATAA---AT----ATTTGTACGCCTT-CCTAAT----------TTGATTaaatatgagaa
gi|1 : acaaaacaaaatgtTG-AAAGTACTGTGA--GTAGG-----GCTTTA-ATAA---AA----AGCCATACGCCTA-TTTAAT----------TTGATTGAT-ATTA-TTGTACTGGTTT--GTTTATTTTATGC-----TTTTTATTAA-AGAATGACATG--ATCCAATGTCAACAATATATTTTTATTGTTTTAATTGTTTCTGCCGGCATATATAAACTATATGG--A-AAAAATGGAATACT--AGG-AATAAAAAGTAGTCCCTGACGCGTATG---ATTATTGCAGTGATCA-----ACACTGCAAAGCGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATATgg
gi|7 : agtataGAGTACTGACA--GCCGA-----GCTTTG-ATA-----T----ATCCATATGCCTT-CCTAGT----------TTCGTTGA--A--A-TTGTA--GCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AAactcgatccactttc
gi|9 : taaaagtacgtgtAGTACCGGTA--ACAGG-----ACTTTA-ATAC---AT----ATCTATACGTTTT-CCTAAT----------TTGATTGGT-ATTA-TTTTA--GCGTTTGGTTTATTTTATGCAAC
gi|11 : caatcaaagtacatacAGTACTGGTA--ACAGGGTTTAACTTTA-ATTA---AT----ATTCATACGCCTCACTT-AT----------TTGATTGAT-ATT
gi|15 : atcaaagtagtgtaTACTGACG----CTG-----ACTTGA-ATAA---AT----ATTCATGCACCTT-CCTA---------------------------CTGTA--GCGTTTTGTTTATTTTATGTAACA
gi|2 : CTGATA--GCTGT-----GCTCTATACAC---ATGGCAATTCATGCGCCTT-CCTAATTTGGTTTTTATTGATTATCTATTA-TTGTA--GC
gi|14 : TCA-ATTA---AT----ATGCATACACCTT-CCTAAT----------TTGACTGAC-ATTA-TTGTA--GCGTTTAGTTTATTTTATGCAACgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|16 : TACGTCTT-CCTAAT----------TTAATT----GTTATTTGCA--CCGTTTGGTTTATTGTAGGCAACA
gi|2 : aAG-A-AATATGTCATTATACAATGTCCTCAATATATT---GTTTCATTGGTTGATTTG--TTGCATATATAATATACAT-G--AACAATATG--AAATTTGAGG-AATAAAAAGTAGTTCCTCTCGCGTA-----TC----------GTCACTTGGACA--GCGGAGTTTGACCACGCCGACATAAGCAG-G-AC--
gi|6 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaCAATATATTTTTA-TTGTTAATTTATT---GC-TGCTTGCAT--AATACA--------AAA------TACATGAAA-AA-AAAAAGAAGTTCCTGTCGCATATGGTTAT----------TTTG-----GCAAT---AATC--AGTCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAAtgtatgcatttagcatcaagtccggcaaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AATAATCAAAGTATTAGAAAGTACAGATAGCTGTTTTTTTATAAATATTCATACACCTTCCTTATTTGATTGAT
Alignments
lowQualScore : 11111 111111 11 1 22222222 1111111 111 22222222 888888888888888888888888888888888888888 1 1 111 1 55555555 1
lowQualScore : 44444 4 8 44 0 444444 33 1 6666 777777 777777 0 3 3 3 11 3 6 66666666 22 9999999 77 1 111 6 6 99 1 6 11111111 6 999999999999999999999999999999999999999 2 0 0 444 1 1 1 1 2 5 4 4 11111111 5
lowQualScore : ..... . . .. . ...... .. . .... ...... ...... . . . . .. . . ........ .. ....... .. . ... . . .. . . ........ . ....................................... . . . ... . . . . . . . . ........ .
lowQualScore : 11111 4 9 22 7 222222 55 4 1111 777777 222222 8 1 1 2 00 3 7 22222222 00 5555555 00 0 333 7 7 22 0 7 22222222 7 000000000000000000000000000000000000000 0 0 0 888 0 0 0 0 5 0 0 0 00000000 5
consensus : ATCAAAGTAGT-TA-AAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-ATACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-G--AAAAA-ATG--A-ACTTGAGG-AATAAAAAGTAGTCCCTGTCGCGTAT-G-C-AT----------NTCGAC-ACTGCGAAN-C-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Reference ( family-148 ) : ATCAAGNTGGT-TA-AAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGNNACAT-ATACAATGTCNNCAATATATTTTTATT-TTN-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-G--ANAAA-ATG--ATACTTGAGG-AATAAAAAGTAGTCCCTGTCGCGTAT-G---AT----------NTCGAC-A-TGCGAAG-C-TNATCACGACGACGTAAGCAG-G-GC--NGANCCNGNCNAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|1 : -TG-AAAGTACTGTGA--GTAGGG-----CTTTA-ATAAAA----AGCCATACGCCTATTTAATTTG------ATTGA-----TATTATTGTACTGGTTTGTTTATTTTATGC-----TTTTTATTAA-AGAATG--ACATGATCCAATGTCAACAATATATTTTTATT-GTT-TTAATTGTTTCTGCCGGCATA-TATAAACTATATGG--AAAAA-ATGGAATACT--AGG-AATAAAAAGTAGTCCCTGACGCGTAT-G---ATTATTGCAGTGATCAAC-ACTGCAAAG-CGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|10 : agtataATCAAAGTAGC-TA-AAAGTACTGATA--GCCGAC-----CTTTA-ATAAAA----AG-CATCCGCCTGACTAATTTG------ATTGA-----TATTGTTGTAGCATTTGGTTTATTCTATGCAactcgatccactttc
gi|11 : ATCAAAGTAGTGTA-A--GTACTGGTA--ACAGGGTTTAACTTTA-ATTAAT----ATTCATACGCCTCACTTATTTG------ATTGA-----TATT
gi|12 : ATCAAAGTA-T-TAGAAAGTACAGATA--GCTGTT-----TTTTT-ATAAAT----ATTCATACACCTTCCTTATTTG------ATTGA-----T
gi|13 : aataCAAAATGTT-TA-AGA-TCCTGATGTTGCTGGG-----CTTTG-ATAAAT----ATTTGTACGCCTTCCTAATTTG------ATTG
gi|14 : acaaaaTCA-ATTAAT----ATGCATACACCTTCCTAATTTG------ACTGA-----CATTATTGTAGCGTTTAGTTTATTTTATGCAACg
gi|15 : TACTGAC---GCTGA------CTTGA-ATAAAT----ATTCATGCACCTTCCTA--------------------------CTGTAGCGTTTTGTTTATTTTATGTAACA
gi|16 : ATACGTCTTCCTAATTTA------ATTGT-----TAT--TTGCACCGTTTGGTTTATTGTAGGCAACA
gi|2 : CTGATA--GCTGTG-----CTCTATACACATGGCAATTCATGCGCCTTCCTAATTTGGTTTTTATTGATTATCTATTATTGTAGCGTTT--TTT-TTTAATGTAAGAACTT
gi|2 : AA-A-TATGTCAT-T-ATACAATGTCCTCAATATATT---GTT-TCA-TTGGTTGATTTG--TTGCATA-TATAATATACAT-G--AACAATATG--AAATTTGAGG-AATAAAAAGTAGTTCCTCTCGCGTATCGTC-AC----------TTGGAC-A--GCGGAGTT-TGACCACGCCGACATAAGCAG-G-AC--TGacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|3 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagATCAATTTAAT-TA-AGAGTACTGATA--GTCGGA-----CTTTA-ATAAGT----ATTCCTACGCCTTCTTAATTTA------ATTAA-----CATTATTATAGCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AATATCTCA--ATACAATGTCTGCAATATATTTTTATT-TTT-TTATTTTTTTTGGCTTGCTTA-TATTAAATACAC-G--ACAAA-ATG--CTACTTGAGG-AATAAAAAGTAGTCCCTGTTGCGTA------AT----------ATCAAC-ACTGCAAAT-CTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATtatgcatttagcatcaagtccggcaaa
gi|4 : T-TA-AAAGTTCTGGTA--GACCAA-----TTTTG-AT---C----ATTCATATACCTTCCTAATTCA------ATTCA-----TATCATTATAGCATTTGG-TTAATTTATGAAACA--TTT--TTAATA-AATGACATAT--TACAAAGTCCTCAATATATTTTTA---TTA-TTGTTTGATTTG--TTGCTTA-AATAAAATACAT-G--AAAAA-ATA--A-AATTGAGGTTATAAAAAATAGTCCCTGctattttatccttct
gi|5 : aaagtaTCAAAGTA-T-TAGAAAGTACAAATA--GACGG--------TT-------T----CCTCATACACCTTCATAAATTG------ATTGA-----TATCATAATAGCCGTTGGTTTATTTTGTT-----ATTTT--CTGATA-AATG--ACAT-ATACAATGTCAGATATATATTTCTA-------------GTTTCTGCTTGCATA-TAAAAAAAACAT-GAAATAAA-ATG--AAATATGAGA-A
gi|6 : CAATATATTTTTATTGTTAATTTATTGCT---GCTTGCATAATACAAAATACAT-G--AAAAA-A-------------------AAAAGAAGTTCCTGTCGCATAT-GGTTAT----------TTTGGCAA-T---AAT-C--AGTCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAA
gi|7 : aAGTACTGACA--GCCGAG-----CTTTG-ATA--T----ATCCATATGCCTTCCTAGTTTC------GTTGA------A--ATTGTAGCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AA
gi|8 : taaaagtacgtgtgATCAAG-TGGT-TG-AAAGTAGTGACA--GCCGGA-----CTTGG-ATAAAT----ATTCATACACCTTCCTA---TG-------TTG-------ATTATTGTAGCATTTGG-TTATTTTATGCAACA
gi|9 : atgtaAGTACCGGTA--ACAGGA-----CTTTA-ATACAT----ATCTATACGTTTTCCTAATTTG------ATTGG-----TATTATTTTAGCGTTTGGTTTATTTTATGCAACtaat
Alignments
lowQualScore : 111 111111 11 1 22 1111111 111 3333333333 7777777777777777 111111 2 1 1 111 1 22222222 1
lowQualScore : 777 7 44 0 444444 33 1 6666 777777 777777 0 3 3 3 11 3 6 55 999 8 66 9999999 77 1 111 6 6 99 6 1111111111 6 0000000000000000 0 888888 1 0 3 0 0 444 1 5 1 1 33333333 5
lowQualScore : ... . .. . ...... .. . .... ...... ...... . . . . .. . . .. ... . .. ....... .. . ... . . .. . .......... . ................ . ...... . . . . . ... . . . . ........ .
lowQualScore : 111 3 22 7 222222 55 4 1111 777777 222222 8 1 1 2 00 3 7 44 666 0 44 8888888 00 0 333 7 7 22 7 5555555555 7 5555555555555555 2 888888 0 0 2 0 0 888 0 0 0 0 00000000 5
consensus : ATCAAAGTANT-TA-AAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA---A-NT-TGAGG-AATAAAAAGTAGTCCCTGTCGCGTAT-GNTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Reference ( family-148 ) : ATCAAAGTAGT-TA-AAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA---A-CT-TGAGG-AATAAAAAGTAGTCCCTGTCGCGTAT-G--CAT-------NTCGACACTGC-GAANC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
gi|1 : AGTATA-TG-AAAGTACTGTGA--GTAGGG-----CTTTA-ATAAAA----AGCCATACGCCTATTTAATTTG------ATTGA-----TATTATTGTACTGGTTTGTTTATTTTATGC-----TTTTTATTAA-AGAATG--ACATGA-TCCAATGTCAACAATATATTTTTATT-GTT-TTAATTGTTTCTGCCGGCATA-TATAAACTATATGGAA--AAA-ATGGAATA-CT---AGG-AATAAAAAGTAGTCCCTGACGCGTAT-GATTATTGCAGTGATCAACACTGC-AAAGCGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|10 : ATCAAAGTAGC-TA-AAAGTACTGATA--GCCGAC-----CTTTA-ATAAAA----AG-CATCCGCCTGACTAATTTG------ATTGA-----TATTGTTGTAGCATTTGGTTTATTCTATGCAactcgatccactttc
gi|11 : ATCAAAGTAGTGTA-A--GTACTGGTA--ACAGGGTTTAACTTTA-ATTAAT----ATTCATACGCCTCACTTATTTG------ATTGA-----TATT
gi|12 : ATCAAAGTA-T-TAGAAAGTACAGATA--GCTGTT-----TTTTT-ATAAAT----ATTCATACACCTTCCTTATTTG------ATTGA-----T
gi|13 : aataCAAAATGTT-TA-AGA-TCCTGATGTTGCTGGG-----CTTTG-ATAAAT----ATTTGTACGCCTTCCTAATTTG------ATTG
gi|14 : acaaaaTCA-ATTAAT----ATGCATACACCTTCCTAATTTG------ACTGA-----CATTATTGTAGCGTTTAGTTTATTTTATGCAACg
gi|15 : TACTGAC---GCTGA------CTTGA-ATAAAT----ATTCATGCACCTTCCTA--------------------------CTGTAGCGTTTTGTTTATTTTATGTAACA
gi|16 : ATACGTCTTCCTAATTTA------ATTGT-----TAT--TTGCACCGTTTGGTTTATTGTAGGCAACA
gi|2 : CTGATA--GCTGTG-----CTCTATACACATGGCAATTCATGCGCCTTCCTAATTTGGTTTTTATTGATTATCTATTATTGTAGCGTTT--TTT-TTTAATGTAAGAACTT
gi|2 : AA-A-TATGTCAT-T-A-TACAATGTCCTCAATATATT---GTT-TCA-TTGGTTGATTTG--TTGCATA-TATAATATACAT-GAA--CAATATGA---AATT-TGAGG-AATAAAAAGTAGTTCCTCTCGCGTATCGT-CAC-------TTGGACA--GCGGAGTT-TGACCACGCCGACATAAGCAG-G-AC--TGacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|3 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagATCAATTTAAT-TA-AGAGTACTGATA--GTCGGA-----CTTTA-ATAAGT----ATTCCTACGCCTTCTTAATTTA------ATTAA-----CATTATTATAGCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AATATCTCA--A-TACAATGTCTGCAATATATTTTTATT-TTT-TTATTTTTTTTGGCTTGCTTA-TATTAAATACAC-GAC--AAA-ATGCT--A-CT-TGAGG-AATAAAAAGTAGTCCCTGTTGCGTA------AT-------ATCAACACTGC-AAATCTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATtatgcatttagcatcaagtccggcaaa
gi|4 : AAAGTA-T-TA-AAAGTTCTGGTA--GACCAA-----TTTTG-AT---C----ATTCATATACCTTCCTAATTCA------ATTCA-----TATCATTATAGCATTTGG-TTAATTTATGAAACA--TTT--TTAATA-AATG--ACAT-ATTACAAAGTCCTCAATATATTTTTA---TTA-TTGTTTGATTTG--TTGCTTA-AATAAAATACAT-GAA--AAA-ATAA---A-AT-TGAGGTTATAAAAAATAGTCCCTGctattttatccttct
gi|5 : TCAAAGTA-T-TAGAAAGTACAAATA--GACGG--------TT-------T----CCTCATACACCTTCATAAATTG------ATTGA-----TATCATAATAGCCGTTGGTTTATTTTGTT-----ATTTT--CTGATA-AATG--ACAT-A-TACAATGTCAGATATATATTTCTA-------------GTTTCTGCTTGCATA-TAAAAAAAACAT-GAAATAAA-ATGA---A-ATATGAGA-A
gi|6 : CAATATATTTTTATTGTTAATTTATTGCT---GCTTGCATAATACAAAATACAT-GAA--AAA-A---------------------AAAAGAAGTTCCTGTCGCATAT-GGTTAT-------TTTGGCAAT----AATC-AG-TCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAA
gi|7 : aAAAGTACG-TG-TGAGTACTGACA--GCCGAG-----CTTTG-ATA--T----ATCCATATGCCTTCCTAGTTTC------GTTGA------A--ATTGTAGCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AA
gi|8 : taATCAA-GTGGT-TG-AAAGTAGTGACA--GCCGGA-----CTTGG-ATAAAT----ATTCATACACCTTCCTA---TG-------TTG-------ATTATTGTAGCATTTGG-TTATTTTATGCAACA
gi|9 : atgtaATCAAAGTACA-TA-CA-GTACCGGTA--ACAGGA-----CTTTA-ATACAT----ATCTATACGTTTTCCTAATTTG------ATTGG-----TATTATTTTAGCGTTTGGTTTATTTTATGCAACtaat
Alignments
lowQualScore : 111111 11 1 22 1111111 111 11111111 111 33333333 111111 2 1 1 111 1 22222222 1
lowQualScore : 777 44 0 444444 33 1 6666 777777 777777 0 3 3 3 11 3 6 55 999 8 66 9999999 77 1 111 6 6 99 6 99999999 6 000 0 33333333 0 888888 0 3 0 0 444 1 5 1 1 33333333 5
lowQualScore : ... .. . ...... .. . .... ...... ...... . . . . .. . . .. ... . .. ....... .. . ... . . .. . ........ . ... . ........ . ...... . . . . ... . . . . ........ .
lowQualScore : 555 22 7 222222 55 4 1111 777777 222222 8 1 1 2 00 3 7 44 666 0 44 8888888 00 0 333 7 7 22 7 00000000 7 222 8 55555555 2 888888 0 2 0 0 888 0 0 0 0 00000000 5
consensus : ATCAAAGTANT-TGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Reference ( family-148 ) : ATCAAAGTANT-TAAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-ANT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGNTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
gi|1 : AGTATA-TGAAAGTACTGTGA--GTAGGG-----CTTTA-ATAAAA----AGCCATACGCCTATTTAATTTG------ATTGA-----TATTATTGTACTGGTTTGTTTATTTTATGC-----TTTTTATTAA-AGAATG--ACATGA-TCCAATGTCAACAATATATTTTTATT-GTT-TTAATTGTTTCTGCCGGCATA-TATAAACTATATGGAA--AAA-ATGG-AATAC-TAGG-AATAAAAAGTAGTCCCTGACGCGTATGATTATTGCAGTGATCAACACTGC-AAAGCGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|10 : ATCAAAGTAGC-TAAAAGTACTGATA--GCCGAC-----CTTTA-ATAAAA----AG-CATCCGCCTGACTAATTTG------ATTGA-----TATTGTTGTAGCATTTGGTTTATTCTATGCAactcgatccactttc
gi|11 : ATCAAAGTAGTGTAA--GTACTGGTA--ACAGGGTTTAACTTTA-ATTAAT----ATTCATACGCCTCACTTATTTG------ATTGA-----TATT
gi|12 : ATCAAAGTATT-AGAAAGTACAGATA--GCTGTT-----TTTTT-ATAAAT----ATTCATACACCTTCCTTATTTG------ATTGA-----T
gi|13 : aataCAAAATGTT-TAAGA-TCCTGATGTTGCTGGG-----CTTTG-ATAAAT----ATTTGTACGCCTTCCTAATTTG------ATTG
gi|14 : acaaaaTCA-ATTAAT----ATGCATACACCTTCCTAATTTG------ACTGA-----CATTATTGTAGCGTTTAGTTTATTTTATGCAACg
gi|15 : TACTGAC---GCTGA------CTTGA-ATAAAT----ATTCATGCACCTTCCTA--------------------------CTGTAGCGTTTTGTTTATTTTATGTAACA
gi|16 : ATACGTCTTCCTAATTTA------ATTGT-----TAT--TTGCACCGTTTGGTTTATTGTAGGCAACA
gi|2 : CTGATA--GCTGTG-----CTCTATACACATGGCAATTCATGCGCCTTCCTAATTTGGTTTTTATTGATTATCTATTATTGTAGCGTTT--TTT-TTTAATGTAAGAACTT
gi|2 : AA-A-TATGTCAT-T-A-TACAATGTCCTCAATATATT---GTT-TCA-TTGGTTGATTTG--TTGCATA-TATAATATACAT-GAA--CAATATGA-AAT-TTGAGG-AATAAAAAGTAGTTCCTCTCGCGTATCGTCAC-------TTGGACA--GCGGAGTT-TGACCACGCCGACATAAGCAG-G-AC--TGacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|3 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagATCAATTTAAT-TAAGAGTACTGATA--GTCGGA-----CTTTA-ATAAGT----ATTCCTACGCCTTCTTAATTTA------ATTAA-----CATTATTATAGCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AATATCTCA--A-TACAATGTCTGCAATATATTTTTATT-TTT-TTATTTTTTTTGGCTTGCTTA-TATTAAATACAC-GAC--AAA-ATGCTACT-T-GAGG-AATAAAAAGTAGTCCCTGTTGCGTA-----AT-------ATCAACACTGC-AAATCTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATtatgcatttagcatcaagtccggcaaa
gi|4 : AAAGTA-T-TAAAAGTTCTGGTA--GACCAA-----TTTTG-AT---C----ATTCATATACCTTCCTAATTCA------ATTCA-----TATCATTATAGCATTTGG-TTAATTTATGAAACA--TTT--TTAATA-AATG--ACAT-ATTACAAAGTCCTCAATATATTTTTA---TTA-TTGTTTGATTTG--TTGCTTA-AATAAAATACAT-GAA--AAA-ATAA-AAT-T-GAGGTTATAAAAAATAGTCCCTGctattttatccttct
gi|5 : TCAAAGTATT-AGAAAGTACAAATA--GACGG--------TT-------T----CCTCATACACCTTCATAAATTG------ATTGA-----TATCATAATAGCCGTTGGTTTATTTTGTT-----ATTTT--CTGATA-AATG--ACAT-A-TACAATGTCAGATATATATTTCTA-------------GTTTCTGCTTGCATA-TAAAAAAAACAT-GAAATAAA-ATGA-AATAT-GAGA-A
gi|6 : CAATATATTTTTATTGTTAATTTATTGCT---GCTTGCATAATACAAAATACAT-GAA--AAA-A-------------------AAAAGAAGTTCCTGTCGCATATGGTTAT-------TTTGGCAAT----AATC-AG-TCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAA
gi|7 : aAAAGTACG-TGTGAGTACTGACA--GCCGAG-----CTTTG-ATA--T----ATCCATATGCCTTCCTAGTTTC------GTTGA------A--ATTGTAGCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AA
gi|8 : taATCAA-GTGGT-TGAAAGTAGTGACA--GCCGGA-----CTTGG-ATAAAT----ATTCATACACCTTCCTA---TG-------TTG-------ATTATTGTAGCATTTGG-TTATTTTATGCAACA
gi|9 : atgtaATCAAAGTACA-TACA-GTACCGGTA--ACAGGA-----CTTTA-ATACAT----ATCTATACGTTTTCCTAATTTG------ATTGG-----TATTATTTTAGCGTTTGGTTTATTTTATGCAACtaat
Alignments
lowQualScore : 111111 11 1 22 1111111 111 111 33333333 111111 2 1 1 111 1 22222222 1
lowQualScore : 4 00 44 0 444444 33 3 6666 777777 777777 0 3 3 3 11 3 6 55 999 8 66 9999999 77 1 111 6 6 99 6 88 777 6 666 0 33333333 0 888888 0 3 0 0 444 1 5 1 1 33333333 5
lowQualScore : . .. .. . ...... .. . .... ...... ...... . . . . .. . . .. ... . .. ....... .. . ... . . .. . .. ... . ... . ........ . ...... . . . . ... . . . . ........ .
lowQualScore : 5 55 22 7 222222 55 4 1111 777777 222222 8 1 1 2 00 3 7 44 666 0 44 8888888 00 0 333 7 7 22 7 22 555 7 000 8 55555555 2 888888 0 2 0 0 888 0 0 0 0 00000000 5
consensus : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Reference ( family-148 ) : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
gi|1 : AGTATATGAAAGTACTGTGA--GTAGGG-----CTTTA-ATAAAA----AGCCATACGCCTATTTAATTTG------ATTGA-----TATTATTGTACTGGTTTGTTTATTTTATGC-----TTTTTATTAA-AGAATG--ACATGA-TCCAATGTCAACAATATATTTTTATT-GTT-TTAATTGTTTCTGCCGGCATA-TATAAACTATATGGAA--AAA-ATGG-AATAC-TAGG-AATAAAAAGTAGTCCCTGACGCGTATGATTATTGCAGTGATCAACACTGC-AAAGCGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|10 : ATCAAAGTAGCTAAAAGTACTGATA--GCCGAC-----CTTTA-ATAAAA----AG-CATCCGCCTGACTAATTTG------ATTGA-----TATTGTTGTAGCATTTGGTTTATTCTATGCAactcgatccactttc
gi|11 : ATCAAAGTAGT-GTAAGTACTGGTA--ACAGGGTTTAACTTTA-ATTAAT----ATTCATACGCCTCACTTATTTG------ATTGA-----TATT
gi|12 : ATCAAAGTATTAGAAAGTACAGATA--GCTGTT-----TTTTT-ATAAAT----ATTCATACACCTTCCTTATTTG------ATTGA-----T
gi|13 : aataCAAAATGTTTAAGA-TCCTGATGTTGCTGGG-----CTTTG-ATAAAT----ATTTGTACGCCTTCCTAATTTG------ATTG
gi|14 : acaaaaTCA-ATTAAT----ATGCATACACCTTCCTAATTTG------ACTGA-----CATTATTGTAGCGTTTAGTTTATTTTATGCAACg
gi|15 : TACTGAC---GCTGA------CTTGA-ATAAAT----ATTCATGCACCTTCCTA--------------------------CTGTAGCGTTTTGTTTATTTTATGTAACA
gi|16 : ATACGTCTTCCTAATTTA------ATTGT-----TAT--TTGCACCGTTTGGTTTATTGTAGGCAACA
gi|2 : CTGATA--GCTGTG-----CTCTATACACATGGCAATTCATGCGCCTTCCTAATTTGGTTTTTATTGATTATCTATTATTGTAGCGTTT--TTT-TTTAATGTAAGAACTT
gi|2 : AA-A-TATGTCAT-T-A-TACAATGTCCTCAATATATT---GTT-TCA-TTGGTTGATTTG--TTGCATA-TATAATATACAT-GAA--CAATATGA-AAT-TTGAGG-AATAAAAAGTAGTTCCTCTCGCGTATCGTCAC-------TTGGACA--GCGGAGTT-TGACCACGCCGACATAAGCAG-G-AC--TGacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|3 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagATCAATTTAATTAAGAGTACTGATA--GTCGGA-----CTTTA-ATAAGT----ATTCCTACGCCTTCTTAATTTA------ATTAA-----CATTATTATAGCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AATATCTCA--A-TACAATGTCTGCAATATATTTTTATT-TTT-TTATTTTTTTTGGCTTGCTTA-TATTAAATACAC-GAC--AAA-ATGCTACT-T-GAGG-AATAAAAAGTAGTCCCTGTTGCGTA-----AT-------ATCAACACTGC-AAATCTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATtatgcatttagcatcaagtccggcaaa
gi|4 : AAAGTA-TTAAAAGTTCTGGTA--GACCAA-----TTTTG-AT---C----ATTCATATACCTTCCTAATTCA------ATTCA-----TATCATTATAGCATTTGG-TTAATTTATGAAACA--TTT--TTAATA-AATG--ACAT-ATTACAAAGTCCTCAATATATTTTTA---TTA-TTGTTTGATTTG--TTGCTTA-AATAAAATACAT-GAA--AAA-ATAA-AAT-T-GAGGTTATAAAAAATAGTCCCTGctattttatccttct
gi|5 : TCAAAGTATTAGAAAGTACAAATA--GACGG--------TT-------T----CCTCATACACCTTCATAAATTG------ATTGA-----TATCATAATAGCCGTTGGTTTATTTTGTT-----ATTTT--CTGATA-AATG--ACAT-A-TACAATGTCAGATATATATTTCTA-------------GTTTCTGCTTGCATA-TAAAAAAAACAT-GAAATAAA-ATGA-AATAT-GAGA-A
gi|6 : CAATATATTTTTATTGTTAATTTATTGCT---GCTTGCATAATACAAAATACAT-GAA--AAA-A-------------------AAAAGAAGTTCCTGTCGCATATGGTTAT-------TTTGGCAAT----AATC-AG-TCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAA
gi|7 : aAAAGTACGTGTGAGTACTGACA--GCCGAG-----CTTTG-AT--AT----ATCCATATGCCTTCCTAGTTTC------GTTGA------A--ATTGTAGCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AA
gi|8 : taATCAA-GTGGTTGAAAGTAGTGACA--GCCGGA-----CTTGG-ATAAAT----ATTCATACACCTTCCTA---TG-------TTG-------ATTATTGTAGCATTTGG-TTATTTTATGCAACA
gi|9 : atgtaATCAAAGTACAT-ACAGTACCGGTA--ACAGGA-----CTTTA-ATACAT----ATCTATACGTTTTCCTAATTTG------ATTGG-----TATTATTTTAGCGTTTGGTTTATTTTATGCAACtaat
Alignments
lowQualScore : 111111 11 1 22 1111111 111 111 33333333 111111 2 1 1 111 1 22222222 1
lowQualScore : 4 00 44 0 444444 33 3 6666 777777 777777 0 3 3 3 11 3 6 55 999 8 66 9999999 77 1 111 6 6 99 6 88 777 6 666 0 33333333 0 888888 0 3 0 0 444 1 5 1 1 33333333 5
lowQualScore : . .. .. . ...... .. . .... ...... ...... . . . . .. . . .. ... . .. ....... .. . ... . . .. . .. ... . ... . ........ . ...... . . . . ... . . . . ........ .
lowQualScore : 5 55 22 7 222222 55 4 1111 777777 222222 8 1 1 2 00 3 7 44 666 0 44 8888888 00 0 333 7 7 22 7 22 555 7 000 8 55555555 2 888888 0 2 0 0 888 0 0 0 0 00000000 5
consensus : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Reference ( family-148 ) : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
gi|1 : AGTATATGAAAGTACTGTGA--GTAGGG-----CTTTA-ATAAAA----AGCCATACGCCTATTTAATTTG------ATTGA-----TATTATTGTACTGGTTTGTTTATTTTATGC-----TTTTTATTAA-AGAATG--ACATGA-TCCAATGTCAACAATATATTTTTATT-GTT-TTAATTGTTTCTGCCGGCATA-TATAAACTATATGGAA--AAA-ATGG-AATAC-TAGG-AATAAAAAGTAGTCCCTGACGCGTATGATTATTGCAGTGATCAACACTGC-AAAGCGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|10 : ATCAAAGTAGCTAAAAGTACTGATA--GCCGAC-----CTTTA-ATAAAA----AG-CATCCGCCTGACTAATTTG------ATTGA-----TATTGTTGTAGCATTTGGTTTATTCTATGCAactcgatccactttc
gi|11 : ATCAAAGTAGT-GTAAGTACTGGTA--ACAGGGTTTAACTTTA-ATTAAT----ATTCATACGCCTCACTTATTTG------ATTGA-----TATT
gi|12 : ATCAAAGTATTAGAAAGTACAGATA--GCTGTT-----TTTTT-ATAAAT----ATTCATACACCTTCCTTATTTG------ATTGA-----T
gi|13 : aataCAAAATGTTTAAGA-TCCTGATGTTGCTGGG-----CTTTG-ATAAAT----ATTTGTACGCCTTCCTAATTTG------ATTG
gi|14 : acaaaaTCA-ATTAAT----ATGCATACACCTTCCTAATTTG------ACTGA-----CATTATTGTAGCGTTTAGTTTATTTTATGCAACg
gi|15 : TACTGAC---GCTGA------CTTGA-ATAAAT----ATTCATGCACCTTCCTA--------------------------CTGTAGCGTTTTGTTTATTTTATGTAACA
gi|16 : ATACGTCTTCCTAATTTA------ATTGT-----TAT--TTGCACCGTTTGGTTTATTGTAGGCAACA
gi|2 : CTGATA--GCTGTG-----CTCTATACACATGGCAATTCATGCGCCTTCCTAATTTGGTTTTTATTGATTATCTATTATTGTAGCGTTT--TTT-TTTAATGTAAGAACTT
gi|2 : AA-A-TATGTCAT-T-A-TACAATGTCCTCAATATATT---GTT-TCA-TTGGTTGATTTG--TTGCATA-TATAATATACAT-GAA--CAATATGA-AAT-TTGAGG-AATAAAAAGTAGTTCCTCTCGCGTATCGTCAC-------TTGGACA--GCGGAGTT-TGACCACGCCGACATAAGCAG-G-AC--TGacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|3 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagATCAATTTAATTAAGAGTACTGATA--GTCGGA-----CTTTA-ATAAGT----ATTCCTACGCCTTCTTAATTTA------ATTAA-----CATTATTATAGCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AATATCTCA--A-TACAATGTCTGCAATATATTTTTATT-TTT-TTATTTTTTTTGGCTTGCTTA-TATTAAATACAC-GAC--AAA-ATGCTACT-T-GAGG-AATAAAAAGTAGTCCCTGTTGCGTA-----AT-------ATCAACACTGC-AAATCTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATtatgcatttagcatcaagtccggcaaa
gi|4 : AAAGTA-TTAAAAGTTCTGGTA--GACCAA-----TTTTG-AT---C----ATTCATATACCTTCCTAATTCA------ATTCA-----TATCATTATAGCATTTGG-TTAATTTATGAAACA--TTT--TTAATA-AATG--ACAT-ATTACAAAGTCCTCAATATATTTTTA---TTA-TTGTTTGATTTG--TTGCTTA-AATAAAATACAT-GAA--AAA-ATAA-AAT-T-GAGGTTATAAAAAATAGTCCCTGctattttatccttct
gi|5 : TCAAAGTATTAGAAAGTACAAATA--GACGG--------TT-------T----CCTCATACACCTTCATAAATTG------ATTGA-----TATCATAATAGCCGTTGGTTTATTTTGTT-----ATTTT--CTGATA-AATG--ACAT-A-TACAATGTCAGATATATATTTCTA-------------GTTTCTGCTTGCATA-TAAAAAAAACAT-GAAATAAA-ATGA-AATAT-GAGA-A
gi|6 : CAATATATTTTTATTGTTAATTTATTGCT---GCTTGCATAATACAAAATACAT-GAA--AAA-A-------------------AAAAGAAGTTCCTGTCGCATATGGTTAT-------TTTGGCAAT----AATC-AG-TCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAA
gi|7 : aAAAGTACGTGTGAGTACTGACA--GCCGAG-----CTTTG-AT--AT----ATCCATATGCCTTCCTAGTTTC------GTTGA------A--ATTGTAGCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AA
gi|8 : taATCAA-GTGGTTGAAAGTAGTGACA--GCCGGA-----CTTGG-ATAAAT----ATTCATACACCTTCCTA---TG-------TTG-------ATTATTGTAGCATTTGG-TTATTTTATGCAACA
gi|9 : atgtaATCAAAGTACAT-ACAGTACCGGTA--ACAGGA-----CTTTA-ATACAT----ATCTATACGTTTTCCTAATTTG------ATTGG-----TATTATTTTAGCGTTTGGTTTATTTTATGCAACtaat
blockSeqs : G TT GTTTAA AT A GGCA GTTTTT TTATCT G C A . T . TC AT T CT TTGTTAA GG A TGG A . AT T CT TT T TCG T CTGCA T A T T T T . T T TTTACGGA .
blockSeqs : G . C A T . . T A C A . T . TC AT . TG TTTCA AT T CTG . . . . A AT . TGG A GCGG . A . . A
blockSeqs : T . T A A . . T T T A . . . . T . CT TTTTT GT A TG . . . . A T . . T AT . . . . A
blockSeqs : T . G T A . . T G C A . . . . A . AG TTA TA T TG . . . . A T .
blockSeqs : A . G G T . . C A T . . . . . C G . . . . . . .
blockSeqs : T . A A A . . T G C
blockSeqs : C . A A A . . C G A
blockSeqs : G . G A A . . T T C
blockSeqs : C . A G A . . T G C
blockSeqs : . . A G A . . T G .
blockSeqs : . . G . . . . . .
blockSeqs : . . A . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : ** ** AT* T**
originalCons : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGTCACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
finalCons : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATG--ACAT-A-TACAATGTCCGCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AATT--GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Alignments
lowQualScore : 111111 111 2222 22222222222 1111111 111 111 33333333 111111 2 1 1 111 1 22222222 1
lowQualScore : 4 00 44 0 444444 33 3 6666 777777 777777 0 3 3 3 99 111 2 7777 6 3 88888888888 3333333 77 1 111 6 6 99 6 88 777 6 666 0 33333333 0 888888 0 3 0 0 444 1 5 1 1 33333333 5
lowQualScore : . .. .. . ...... .. . .... ...... ...... . . . . .. ... . .... . . ........... ....... .. . ... . . .. . .. ... . ... . ........ . ...... . . . . ... . . . . ........ .
lowQualScore : 5 55 22 7 222222 55 4 1111 777777 222222 8 1 1 2 22 666 5 5555 7 5 77777777777 3333333 00 0 333 7 7 22 7 22 555 7 000 8 55555555 2 888888 0 2 0 0 888 0 0 0 0 00000000 5
consensus : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGACAT----A-TACAATGTCC---------GCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
Reference ( family-148 ) : ATCAAAGTANTTGAAAGTACTGATA--GCCGGG-----CTTTA-ATAAAT----ATTCATACGCCTTCCTAATTTG------ATTGA-----TATTATTGTAGCGTTTGGTTTATTTTATGCAACAATTTT--TTAA-A-AATGACAT----A-TACAATGTCC---------GCAATATATTTTTATT-TTA-TTGNTTGNTTCGGCTTGCATA-TATAAAATACAT-GAA--AAA-ATGA-AAT-T-GAGG-AATAAAAAGTAGTCCCTGTCGCGTATGGTTAT-------NTCGACACTGC-GAATC-TGACCACGACGACATAAGCAG-G-GC--NGAGCCGGCCTAAAANCACATCNAGNACCAAACATTTACGGAAACATTAGATAT
gi|1 : AGTATATGAAAGTACTGTGA--GTAGGG-----CTTTA-ATAAAA----AGCCATACGCCTATTTAATTTG------ATTGA-----TATTATTGTACTGGTTTGTTTATTTTATGC-----TTTTTATTAA-AGAATGACATG---A-TCCAATGTCA---------ACAATATATTTTTATT-GTT-TTAATTGTTTCTGCCGGCATA-TATAAACTATATGGAA--AAA-ATGG-AATAC-TAGG-AATAAAAAGTAGTCCCTGACGCGTATGATTATTGCAGTGATCAACACTGC-AAAGCGTTATCACGACGACGTAGGCAG-G-GCTTTGACCCGGCTAAAAAGCACATCAAAAACCAAACA---AC---AACATTAAATAT
gi|10 : ATCAAAGTAGCTAAAAGTACTGATA--GCCGAC-----CTTTA-ATAAAA----AG-CATCCGCCTGACTAATTTG------ATTGA-----TATTGTTGTAGCATTTGGTTTATTCTATGCAactcgatccactttc
gi|11 : ATCAAAGTAGT-GTAAGTACTGGTA--ACAGGGTTTAACTTTA-ATTAAT----ATTCATACGCCTCACTTATTTG------ATTGA-----TATT
gi|12 : ATCAAAGTATTAGAAAGTACAGATA--GCTGTT-----TTTTT-ATAAAT----ATTCATACACCTTCCTTATTTG------ATTGA-----T
gi|13 : aataCAAAATGTTTAAGA-TCCTGATGTTGCTGGG-----CTTTG-ATAAAT----ATTTGTACGCCTTCCTAATTTG------ATTG
gi|14 : acaaaaTCA-ATTAAT----ATGCATACACCTTCCTAATTTG------ACTGA-----CATTATTGTAGCGTTTAGTTTATTTTATGCAACg
gi|15 : TACTGAC---GCTGA------CTTGA-ATAAAT----ATTCATGCACCTTCCTA--------------------------CTGTAGCGTTTTGTTTATTTTATGTAACA
gi|16 : ATACGTCTTCCTAATTTA------ATTGT-----TAT--TTGCACCGTTTGGTTTATTGTAGGCAACA
gi|2 : CTGATA--GCTGTG-----CTCTATACACATGGCAATTCATGCGCCTTCCTAATTTGGTTTTTATTGATTATCTATTATTGTAGCGTTT--TTT-TTTAATGTAAGAACTT--------------ACAT----A-TGTGA-GCCCTTGTGTTAAGCAACCT-TTTTTATT-TT
gi|2 : AA-A-TATGTCATT---A-TACAATGTCC---------TCAATATATT---GTT-TCA-TTGGTTGATTTG--TTGCATA-TATAATATACAT-GAA--CAATATGA-AAT-TTGAGG-AATAAAAAGTAGTTCCTCTCGCGTATCGTCAC-------TTGGACA--GCGGAGTT-TGACCACGCCGACATAAGCAG-G-AC--TGtaaaaaaagaagaaatatgtcattatacaatgtcctcaatatattgtttcattggttgatttgttgcatatataatatacatgaacaatatgaaatttgaggaataaaaagtagttcctctcgcgtatcgtcacttggacagcggagtttgaccacgccgacataagcaggactgtatgcatttagcatcaagtccggcaaa
gi|3 : ctgatagctgtgctctatacacatggcaattcatgcgccttcctaatttggtttttattgattatctattattgtagcgtttttttttaatgtaagaacttacatatgtgagcccttgtgttaagcaaccttttttatttttaaaaaaagaagATCAATTTAATTAAGAGTACTGATA--GTCGGA-----CTTTA-ATAAGT----ATTCCTACGCCTTCTTAATTTA------ATTAA-----CATTATTATAGCTTTCAGTTTATTGTATGCAACAATTTT--TTAA-A-AAT---ATCTCAA-TACAATGTCT---------GCAATATATTTTTATT-TTT-TTATTTTTTTTGGCTTGCTTA-TATTAAATACAC-GAC--AAA-ATGCTACT-T-GAGG-AATAAAAAGTAGTCCCTGTTGCGTA-----AT-------ATCAACACTGC-AAATCTTGACCATGACGACATGAGCAG-G-GC--AAAGCTGGCCTAAAATTA-ATCTAGTATCAAACATTTACGGAAACA-TAGATATtatgcatttagcatcaagtccggcaaa
gi|4 : AAAGTA-TTAAAAGTTCTGGTA--GACCAA-----TTTTG-AT---C----ATTCATATACCTTCCTAATTCA------ATTCA-----TATCATTATAGCATTTGG-TTAATTTATGAAACA--TTT--TTAATA-AATGACAT----ATTACAAAGTCC---------TCAATATATTTTTA---TTA-TTGTTTGATTTG--TTGCTTA-AATAAAATACAT-GAA--AAA-ATAA-AAT-T-GAGGTTATAAAAAATAGTCCCTGctattttatccttct
gi|5 : TCAAAGTATTAGAAAGTACAAATA--GACGG--------TT-------T----CCTCATACACCTTCATAAATTG------ATTGA-----TATCATAATAGCCGTTGGTTTATTTTGTT-----ATTTT--CTGATA-AATGACAT----A-TACAATGTCA---------GATATATATTTCTA-------------GTTTCTGCTTGCATA-TAAAAAAAACAT-GAAATAAA-ATGA-AATAT-GAGA-A
gi|6 : CAATATATTTTTATTGTTAATTTATTGCT---GCTTGCATAATACAAAATACAT-GAA--AAA-A-------------------AAAAGAAGTTCCTGTCGCATATGGTTAT-------TTTGGCAAT----AATC-AG-TCATGACAACATAAGCAGTGTGT--AAAGCCCGACTAAAA
gi|7 : aAAAGTACGTGTGAGTACTGACA--GCCGAG-----CTTTG-AT--AT----ATCCATATGCCTTCCTAGTTTC------GTTGA------A--ATTGTAGCGTATTGTTTATTTTATG-----ATTTT--TTAA-A-AA
gi|8 : taATCAA-GTGGTTGAAAGTAGTGACA--GCCGGA-----CTTGG-ATAAAT----ATTCATACACCTTCCTA---TG-------TTG-------ATTATTGTAGCATTTGG-TTATTTTATGCAACA
gi|9 : atgtaATCAAAGTACAT-ACAGTACCGGTA--ACAGGA-----CTTTA-ATACAT----ATCTATACGTTTTCCTAATTTG------ATTGG-----TATTATTTTAGCGTTTGGTTTATTTTATGCAACtaat