lowQualScore : 33 33333 11 222
lowQualScore : 0 00 1 6 33333 44 111 77 6 2
lowQualScore : . .. . . ..... .. ... .. . .
lowQualScore : 7 00 0 7 33333 22 000 33 7 9
consensus : AACAAAAGCTGTCGGAGGGA-----CAGCGC-GTTCGACTATTCGA-ATATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
Reference ( gi|3 ) : AACAAGATATGTTGGAGGGA-----CAGCGC-ATTCATCTATTCGA-ATATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|4 : AACAAAAGCTGTTGGAGGGA-----CAGCGTGATTGA-CAATT--A-TTATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAG
gi|2 : ttAACAAAAGCTGTCGGAGGGAGGCGATAGCGT-GTTGGACTATATGA-ATATTTGTCACAAAAGTACAAC-TTTGATTGAGACTGATGACAAATCCAA
gi|8 : tAACAAGAGCTGTCAGAG--A-----CTGTGC-GCTCGACTGTTTGA-AAATCTGTCACAAAAGTACAAA-TTTGAT
gi|1 : aCGA-ATTCACCCGTCCCATCTATTTGT---ATAAGTACAAACTTTGATTGAGACTGATGACAAATCTAAG
gi|7 : ttaactaaagcagtatacaagacagcgtgctcgacttttCTATTTGA-ATATTTGTCACAGAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGCta
gi|9 : aacatgctcgaCTATTCAA-ATATTTGTCAGAAAAGTACAAA-TTTTATTGAGACTGATGAAAAATCCAAGCa
gi|11 : ctgttgaTATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAG
gi|10 : TATTTGTCACAGAAGCACACA-TTTGTTTGGGACTGATGACAAATCCAAGC
gi|15 : TATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGAa
gi|17 : TATTTGTCACCAAAGTACAAA-TTTGATTGAGACTGATAACAaa
gi|13 : TATTTGTCACAGAAGTACAAA-TTTGATTGAGAC---TGACAA--CCAAG
gi|12 : TTTGTCACAAAAGTACAAA-TTTGATCGAAACTGATGACAAATCCAAt
gi|14 : TTTGTCACAGAAGTACAAA-TTTGATTGAGGCTGATGACAAATCTA
gi|16 : AAAAGTACAAA-TCCGATTGAGACTGATGACAAATCCAAGC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TATTTTTTTTAACCTATTTCAACGGTAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Unaligned ( gi|6 ): TATTTTATTAAGCTTAAACAAAATTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Alignments
lowQualScore : 22222 222222222222222
lowQualScore : 2 00000 0 2 4 000000000000000 2
lowQualScore : . ..... . . . ............... .
lowQualScore : 5 00000 7 8 0 888888888888888 7
consensus : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
Reference ( family-145 ) : AACAAAAGCTGTCGGAGGGA-----CAGCGCGTTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|1 : GA-----CAGCGTGCTCGACTTTTCGAATTCACCCGTCCCATCTATTTGT---ATAAGTACAAACTTTGATTGAGACTGATGACAAATCTAAG
gi|10 : ttaactaaagcagtatacaaT---------------ATTTGTCACAGAAGCACACA-TTTGTTTGGGACTGATGACAAATCCAAGCta
gi|11 : T---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGa
gi|12 : TTTGTCACAAAAGTACAAA-TTTGATCGAAACTGATGACAAATCCAA
gi|13 : T---------------ATTTGTCACAGAAGTACAAA-TTTGATTGAGAC---TGACAA--CCAAG
gi|14 : TTTGTCACAGAAGTACAAA-TTTGATTGAGGCTGATGACAAATCTAt
gi|15 : T---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGA
gi|16 : AAAAGTACAAA-TCCGATTGAGACTGATGACAAATCCAAGCaa
gi|17 : T---------------ATTTGTCACCAAAGTACAAA-TTTGATTGAGACTGATAACAa
gi|2 : AACAAAAGCTGTCGGAGGGAGGCGATAGCGTGTTGGACTATATGAAT---------------ATTTGTCACAAAAGTACAAC-TTTGATTGAGACTGATGACAAATCCAA
gi|3 : tAACAAGATATGTTGGAGGGA-----CAGCGCATTCATCTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|4 : AACAAAAGCTGTTGGAGGGA-----CAGCGTGATTGACAATT--ATT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAG
gi|7 : ttAACATGCTCGACTATTTGAAT---------------ATTTGTCACAGAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|8 : AACAAGAGCTGTCAGAG--A-----CTGTGCGCTCGACTGTTTGAAA---------------ATCTGTCACAAAAGTACAAA-TTTGATa
gi|9 : aTTGACTATTCAAAT---------------ATTTGTCAGAAAAGTACAAA-TTTTATTGAGACTGATGAAAAATCCAAGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TATTTTTTTTAACCTATTTCAACGGTAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Unaligned ( gi|6 ): TATTTTATTAAGCTTAAACAAAATTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Alignments
lowQualScore : 22222 222222222222222
lowQualScore : 2 00000 0 4 000000000000000 2
lowQualScore : . ..... . . ............... .
lowQualScore : 5 00000 7 0 888888888888888 7
consensus : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
Reference ( family-145 ) : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|1 : GA-----CAGCGTGCTCGACTTTTCGAATTCACCCGTCCCATCTATTTGT---ATAAGTACAAACTTTGATTGAGACTGATGACAAATCTAAG
gi|10 : ttaactaaagcagtatacaaT---------------ATTTGTCACAGAAGCACACA-TTTGTTTGGGACTGATGACAAATCCAAGCta
gi|11 : T---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGa
gi|12 : TTTGTCACAAAAGTACAAA-TTTGATCGAAACTGATGACAAATCCAA
gi|13 : T---------------ATTTGTCACAGAAGTACAAA-TTTGATTGAGAC---TGACAA--CCAAG
gi|14 : TTTGTCACAGAAGTACAAA-TTTGATTGAGGCTGATGACAAATCTAt
gi|15 : T---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGA
gi|16 : AAAAGTACAAA-TCCGATTGAGACTGATGACAAATCCAAGCaa
gi|17 : T---------------ATTTGTCACCAAAGTACAAA-TTTGATTGAGACTGATAACAa
gi|2 : AACAAAAGCTGTCGGAGGGAGGCGATAGCGTGTTGGACTATATGAAT---------------ATTTGTCACAAAAGTACAAC-TTTGATTGAGACTGATGACAAATCCAA
gi|3 : tAACAAGATATGTTGGAGGGA-----CAGCGCATTCATCTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|4 : AACAAAAGCTGTTGGAGGGA-----CAGCGTGATTGACAATT--ATT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAG
gi|7 : ttAACATGCTCGACTATTTGAAT---------------ATTTGTCACAGAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|8 : AACAAGAGCTGTCAGAG--A-----CTGTGCGCTCGACTGTTTGAAA---------------ATCTGTCACAAAAGTACAAA-TTTGATa
gi|9 : aTTGACTATTCAAAT---------------ATTTGTCAGAAAAGTACAAA-TTTTATTGAGACTGATGAAAAATCCAAGC
blockSeqs : G GGCGA T . .
blockSeqs : G . C . .
blockSeqs : . . T . .
blockSeqs : . T . .
blockSeqs : C . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : ***************
originalCons : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
finalCons : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TATTTTTTTTAACCTATTTCAACGGTAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Unaligned ( gi|6 ): TATTTTATTAAGCTTAAACAAAATTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Alignments
lowQualScore : 22222 222222222222222
lowQualScore : 2 00000 0 4 000000000000000 2
lowQualScore : . ..... . . ............... .
lowQualScore : 5 00000 7 0 888888888888888 7
consensus : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
Reference ( family-145 ) : AACAAGAGCTGTCGGAGGGA-----CAGCGCGCTCGACTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|1 : GA-----CAGCGTGCTCGACTTTTCGAATTCACCCGTCCCATCTATTTGT---ATAAGTACAAACTTTGATTGAGACTGATGACAAATCTAAG
gi|10 : ttaactaaagcagtatacaaT---------------ATTTGTCACAGAAGCACACA-TTTGTTTGGGACTGATGACAAATCCAAGCta
gi|11 : T---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGa
gi|12 : TTTGTCACAAAAGTACAAA-TTTGATCGAAACTGATGACAAATCCAA
gi|13 : T---------------ATTTGTCACAGAAGTACAAA-TTTGATTGAGAC---TGACAA--CCAAG
gi|14 : TTTGTCACAGAAGTACAAA-TTTGATTGAGGCTGATGACAAATCTAt
gi|15 : T---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGA
gi|16 : AAAAGTACAAA-TCCGATTGAGACTGATGACAAATCCAAGCaa
gi|17 : T---------------ATTTGTCACCAAAGTACAAA-TTTGATTGAGACTGATAACAa
gi|2 : AACAAAAGCTGTCGGAGGGAGGCGATAGCGTGTTGGACTATATGAAT---------------ATTTGTCACAAAAGTACAAC-TTTGATTGAGACTGATGACAAATCCAA
gi|3 : tAACAAGATATGTTGGAGGGA-----CAGCGCATTCATCTATTCGAAT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|4 : AACAAAAGCTGTTGGAGGGA-----CAGCGTGATTGACAATT--ATT---------------ATTTGTCACAAAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAG
gi|7 : ttAACATGCTCGACTATTTGAAT---------------ATTTGTCACAGAAGTACAAA-TTTGATTGAGACTGATGACAAATCCAAGC
gi|8 : AACAAGAGCTGTCAGAG--A-----CTGTGCGCTCGACTGTTTGAAA---------------ATCTGTCACAAAAGTACAAA-TTTGATa
gi|9 : aTTGACTATTCAAAT---------------ATTTGTCAGAAAAGTACAAA-TTTTATTGAGACTGATGAAAAATCCAAGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TATTTTTTTTAACCTATTTCAACGGTAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
Unaligned ( gi|6 ): TATTTTATTAAGCTTAAACAAAATTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA