lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 111111111 1 1111 1 22222222222222 1 111 1111 1111111 1111 3333333333 11 22222222222222 2222 1 11111 111111 1111 1111111111 222222222 11 111111 777777777777777777777777777777 1 1 111 4444444444444 666666666666666666666 11 1 4 1 1 11 3333333333 2222 22222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 99999 0 7 4 1 7 88 0 5 3 88 5 3 6 0 333333333 5 3 9999 666 2 3 0 99999999999999 5 2 555 3 4444 1111111 55 4444 6666666666 0 3 1 3 44 44 4 0 55 33 1 77777777777777 4 1111 1 5 55 333 0 3 555 555 0 2 8888888888 4 555 9 33 66666 3 33 111111 0000 555 3 3 555 6666 44 44 2 7777777777 6666 2 2 5555 000000000 33 88 3 333333 4 666666666666666666666666666666 88888 5 7 6 7777 2 44 333 8 8 1111111111111 0 999999999999999999999 4 3 33 9 44 0 2 2 0 6 7 6 5 22 6 5555555555 0000 66666666 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 6 6 6
lowQualScore : . ..... . . . . . .. . . . .. . . . . ......... . . .... ... . . . .............. . . ... . .... ....... .. .... .......... . . . . .. .. . . .. .. . .............. . .... . . .. ... . . ... ... . . .......... . ... . .. ..... . .. ...... .... ... . . ... .... .. .. . .......... .... . . .... ......... .. .. . ...... . .............................. ..... . . . .... . .. ... . . ............. . ..................... . . .. . .. . . . . . . . . .. . .......... .... ........ ..................................................................................................................................... . . . .
lowQualScore : 9 11111 4 6 5 2 6 66 3 6 6 33 0 6 7 4 333333333 0 6 8888 444 0 6 5 99999999999999 5 5 222 6 9999 8888888 00 5555 7777777777 1 6 5 3 88 99 0 7 55 99 1 33333333333333 0 1111 5 9 00 777 5 6 888 888 2 5 4444444444 7 000 3 99 99999 1 99 111111 8888 444 1 1 444 5555 22 22 9 5555555555 1111 7 5 7777 000000000 33 66 6 666666 0 444444444444444444444444444444 33333 0 4 3 7777 6 99 777 5 0 6666666666666 7 555555555555555555555 0 9 55 2 99 0 5 0 0 0 0 0 0 00 0 0000000000 0000 00000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0
consensus : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATC-TC-GCGATATCTCGTTTTCAATTATCTT---------AACTTCCATTC-ATCTCAGG---AAC---ACAAATCAAA-ATTCTTA-----CATTGCANAATGAAATTCTCATCAAAACGATACCA-TTCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGT--ACTTTTG-ATT-A---C----AAAATTT-GTATACTGCAGC-TAAAAT-AAC-GAC-AAATTAC--GAN-AATTTTN---C-TTT---TCAAACCTCAATATCTTTAATTCAAGATCA-TTT---TGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---C---TTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTNTGAA---TGATT--AATTTG-----C-AAATT-ATNAATCCTTC---GT---GTGC-TATTTCAT-CAA---CA----TTT--AGTC--AG-GAG----------ATG----CAAGTTTCCTA-TC-CT----TC--------TATACAAGTCCTTG-GTTGCAG-T-ATA---CA-A-TTTT--------------T---------------TCA-----ACAATTTTAAACACAANTTGCTGGGA----ATGGTNTCGTTTTGNN-GAGAATTTCATTNTGC----A--G-A---AAGAATTTTGATTTG-TG---TTCC---C---G---AGAT-GAATGGAAGTTAAGATAATTGAAAACGA-ANATTGCA-CGTGGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACG
Reference ( gi|1 ) : GGAATTATATAG-----AGAAGGAAAGGCAATTGATTGAGATATTGTGAACGTTCGCATATTCACACAAAATC-TT-GTAATATCTTGTTTTCAATTATCTT---------AACTGCCATTC-ATCTCAGG---TAC---AAAAATCAAA-ATTCTTA-----AACTGTAGAATAAAATTGTCATTAAAACAATACCA-TTCCTGGAAATTTGTGTTT-------AAAATTGTTGAAGT--ACTTGTG-ATT-T---A----AAAATTT-GTATACTGCAGC-TAAAAT-AAT-GAC-AAATTAC--GAT-AATTTTT---C-TTT---TTAAACCTCAATATCTTTAATTCAAGATCA-TTG---TGTGTGATCTAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---C---TTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGAAT--AATTTG-----C-AAATT-ATGAATCATTC---AT---GTGC-TATTTCAT-CAA---CA----TTT--AGTC--AG-GAG----------ATG----CAAGTTTCCTA-TC-CT----TT--------TATACAAGTCCTTG-GTTGCAC-T-ATA---CA-A-TTTT--------------T---------------TCA-----ACAATTGTAAACACAATTTTCTGGGA----ATGGTTTCATTTTGTA-GAGAATTCCATTGTGC----A--G-A---AAGAATTTTGATTTG-CA---T------C---G---AGAT-GAATGAAAGTTTGGATATTTGAAAATGA-AGACTGCAGCATGGTCTAGTGGTAGAGCGTCTGCCTCACATGTGGAAGGTCGTGGGTTCAATCCCCTGCCGGGTCA-----------TACCA-AAGACTTTAAAAATGGTACTAGAAGC-TTCCTCACTTGACGCTC--AGCATTTAGAGGAGA---------GTTCTAGGCCTGGTCGGCCCGGTGTCAGTATAAGGTGACTGGGTGGGGTATCATACCATGTGTCTGCGACATGATACTGCAGTGTGACAGCGCTTAGAACACTGTCTCAAGTAGACACCGTCTGACTGAAAAATTGTTGAAAGCAATGCTAAATACAATACAACTTGAAAATGAAATTTCAGGCCTGTATAATAGCATTATCTTTTAATATTTTCTGTCATACATGCAATACTGGTAATCCTAGAATGTGATAAATTCA
gi|6 : GGAATTATATTG-----AGAAAGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCATATTCACGCAAAATC-TC-GCAATATTTCGTTT-CAATTATCTTTAATTATCTAACTTCCATTC-ATCTCAGG---AAC---ACAAAGCAAA-ATTCTTA-----CACTGCAGAATGAAATTCTCATAAAAACAACACAA-TTCCAAGAAATTTGAGTTT-------AGAATTGTTGAAGT--AATTTTG-ATT-A---C----AAAATTT-GTATACTGAAGG-TGAAAT-AAT-AAC-AAATTAT--GAA-AA----------TGT---TCAAACCTCAATATCTTTAATTCAAGATCATTTT---TGCATGATCAAAACACATAT-TTTAAC-ATCTAAGATTACATACAA---C---TTACAGTTTATGTACAAGAAATG----A-----GTTGCTTGTGTATTAAGAA---TGATT--AATTTG-----C-AAATT-ATTAATGCTTT---GT---GTGC-TATTTCAT-CAA---CA----GTT--AGTCTGAG-GAG----------ATG----GAAGTTTCTTA-TC-CT----TC--------TATATAAG
gi|2 : GGATTTATATAGTCTAGAGAAGAAAAGGCAACTGATTGAGAATTTGTGAACGCTCGCTTATTCACGCAAAATC-TC-GCAATATCTCGTTTTCAGTTATCTG---------AACTTCCATTC-ATCTCAGG---AAC---ACAAATCAAA-ATTCTTA--------------------TTCTCA------CAATATAA-TTTCCAGAAATTTGTGTTC-------AAAATTGTTAAAAT--TCTTTTT-ATT-A---C----AAAATAT-GTATACTGCAGC-TAAAAT-AAC-GAC-ACGTTGC--GAT-ACATTTT---C-TTT---C-ATATCTAAATATCTTTAATTCAAGATGA-TTT---TGCGTGATCGAA--ACATAT-TTTAAC-ATCTAAGATTACATACAA---C---TTACAGTTTATGTACAAGCAATG----A-----GTTGCCCGTGAATTATGAA---TGATT--AATTTA-----T-AAAGT-ATTAATCCTTC---GT---GTGC-TATTTCAT-CAA---CA----TTT--AGTC--AG-GAG----------ATG----CCAGTTTCCTA-TC-CT----TCTA------TATACAAGTCCTT--GCAGTAA-T-ATA---CT-A-TTTT--------------A---------------CCA-----Agtct
gi|4 : GGACTTATATAG-----AGAAGGGAAAGCATGTGATTAAGATGTTATAGACGCTCGCGTATTTACGCAAAATC-TC-GCGAAATCTCCTTTTAAGATATC-----------------CATTC----TCAGA---GAT---AAA---CAAATATTTTT----------GTACATTGAAATTATCTACAAAATGAGACCA-TTCTCAGCAAATTGTGTT--------AAAATTGTTGAAAT--AC------ATTAC---A----AAAATAT-GCGTACTGCAAC-TGAAA--AAT---C-AAG------GAA-AATACTTAAACATTTACATCAAACTTCAATATTCTAAATTTAAGATCA-TTT---CATATGTTTAAA--ACATTA-TTAAACTAT-TAAAGTTATATACAC---C---TTACATTTTATGTAAAAGAAATC----A-----GTAGCCTCTGAAATTTGAA---TAATT--AATTTG-----C-CAATTTATTAATTCTTC---GC---ATGC-TATTTTAT-CAA---CA----TTT--AGTA--GA-GAT----------ATG----TAAGTGTTCCG-CC-CT----TCTATATGTATATATAAGTCCTTGCATTGAAC-TGATATT-TA-A-TTTatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|3 : GAATTATATAG-----AGAAGGAAGGGCAACTGATTGAGATTTTATGAACGCTCGCGTATTCTCTCAAAATC-TC-GCAGTATCTCGTTTTCAATTATCTT---------AACTTCCATTC-ATCTCAGG---AACGTGACAAATTAAA-ATTCTTA-----CATTGCATAATGAAATTCTCATCAAAACAATACCA-TTCTGAGAAATTTTTGTTT-------AAAATTGTTGCAGT--ACTTTTG-ATT-A---C----AAAATGT-GTATTCTGCAGT-TAAA-T-AAC-GAC-AAATAAC--GAT-AATTTTT---C-CTT---C-AAACCTCAATATCTT-AATTAAATATCA-TTT---TGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---C---TTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTAGAAA---TGATT--GATTTG-----C-AAATT-ATTAATACTTC---GT---GTGC-TATTTCAT-CAA---CA----TTT--AGTC--AG-GAG----------ATG----CAAGTTTTCTA-TC-C------T--------TATACAAGTCCTTG-ATTATACAT-ATA---TA-G-Taaacgc
gi|8 : GACTTAAATAG-----AGAATGAAAAGCAGCTGATTGAGA-ATT-------------TATTCACGTAAAATC-AC-GTGAAATCTTGTTTTAAATTGTCTT---------AATTTCCATTCCATCTCAGG---AAT---ACAAATCAAA-ATTATTT-----CTTTGCATAATGAAATTCTCTACAAAACGAGACCAATTCCAGCATATT-GTGTTT-------AAAATTGTTGATGT--ACTTTTG-ATT-A---C----AAAATTT-ATATACTGCAGC-TAAAA--AATCAACAAAAGTACTTGA--AATTTTA---C---T---TCAAACTGGAAATTCTTTAATTCAAAATCA-TTATTCTGCACGATTGAA--ACATTA-TAAAAC-ATCTAAG-TTACATACAG---C---TAATATTTTATTTGTAAGAAATCAGTTA-----GTTACCTGTGAAATCTGAA---TGATT--AATTTGC----C-ACATA-ATGATTAGTTCTGTGT---GTGC-TATTT-GG-CAA---CA----TTT--AA-C--AGAGAG----------ATG----ATAGTTTCCGA-TC-CT----TC--------TATATAAGTCCTTataattatatataagagcggta
gi|5 : GACTTATATAG-----AGAAGGAAAAGCAACTGATTAAGATGTTATGAACGCTCGCGCATTCTCGTAAAATC-TCGGTAA-ATATAGTTTTCAGATATCCT---------AACTTCCATTC-ATCTTAGC---AAT---ACCAATTAAA-ATCCTTT-----CTTTGTACAATGGAATTCTCTACAAAACAATATCA-TTCCCATCAAACTGTGCTT-------AAAATTGTTGAAGT--ACTCATG-ATT-A---C----AATTTTT-TTATACTGCAACTTAAAATCAAG-G---AAAGTAC--TTTAAATTTTA---C---T---TTAAACTGCAATAT-TTCAATTCAAGACAA-TTT---TGCGTGGTTAAA--ACA-GTACAAAAC-ATCTGAGGTTACATACAT---C--------G--TATGCGAAAGAAATC----A-----TTTGTC---AAATTAT----------T--AATTC----------------------TTC---GC---ATGT-TATTTTAT-AAA---CA----TTT--AGT-------AG----------ATGAGTTCGAGTTTCCTA-CT-CT----TC--------TATATAAGTCCTTG-GTT-CAA-T-AAAGGTCATA-TATT--------------T---------------TTA-----AAAGTT
gi|9 : AATTATAAAG-----AGAAGGAAAGGCAACTGACTGAGATTTTGTGAACGCTCGCGTATTCATGCAAAATC-TC-TCAATAACTCATTTTCAAATATCTT---------AACT-----TC-ATCTCAGG---AAC---ACAAATCAAA--TTCTTACATTTAATCGCAAAATGAAATTCTCATCAAAACAATAATA-TTCTCAGCATTTTGTGTTT-------AAAATTGTTAATGT--ACTCTTG-ATT-A---T----GATATTT-GTTTACTGCAAC-TAAAAT-AAC-AAC-AAATTAC--GAGAAATTTTA---C---T---TCAAACCTCAATATCTTTAACTCAAGATCA-TTC---TGTGTGATTGAA--ACATTT-TAAAAT-ATCTAAAATAACATACAA---C---TTACA-TTTAAATACAAAAAATC----A-----GTTGCCTGTGCACTATGAA---TGATT--AATATGC----C-AAATA-ATAAATCCCTT---GT---GTGC-TATTATAT-CAA---CA----TAT--AGTC--AC-GAG----------ATG----CAA------TATTC-CT----TC--------TGTATAAGTCCTcgattataggcaaa
gi|7 : AATGATATAG-----AAAACGAAAGGCAACTGATT---------TGG---------------CGCAAAATC-TC-GCAATGTCTGGTTTTTGATTATCTT---------AACTTCCATTC-ATGTCGGGGAACAC---ACAAATTAAA-ACTCTTA-----CACTGCAGAATGAA-TTTTCATCAAAACAATACCA-TTCCCAGAAATTTGTGTTT-------AGAATTGTTGCAAT--ATTT-----TT-T---AATATAAAATTT-GTTTACTGCAGC-TAAAAT-AAC-GAC-AATTTAT--GAT-AAATTTG---C-CTT---TAAAA---CAATATCTTTAATTCAAGATCA-TTT---TGCATGATGGAA--ACAAGT-TTAAAC-ATCTAAGATTAAATGCAG---C---TTAGAGTTTATGTACAAGAAAT----------------CTGTGAATT----A---TGAAT--AATTGG-----C-AAATA-AT-AATCCTTC---AT---GTGC-TATTTCAT-CAA---CA----TTA--AGTC--TG-GAG----------ATG----CAAGTTTCCTA-TC-CT----TC--------AATTCAAGTCCTTG-ATCACA--T-GGA---CA-A-TTgg
gi|12 : AATTATACAG-----AGATGGATACGCACCTGAATGAGATTTTGTGAACGCTTGTCTATTCTCGCAAATTC-TC-GCAAAAATTTATTTTCAATTATTTT---------AACTTTCATTC-ATCGCAGA---AAT---ACAAATC-AA-ACTGTTA-----TATTGCATAATGAAATTATTTTCAAAACGAGACCA-TACACAACAAATTGTGTTTTAGGTACAAGAACGC--AATT--ACCTGTGCATT-TTGAA----AAAATTTAGT---CTGGAGA-TAAAAgaataaaccaggtatacac
gi|18 : TTATATTG-----AAAAGGAAACTCAACTCGTTTGCCTTTTGTAAAAGCTGG-GTATTCATGCAAACTCATC-G-AATTTC--ATTTTCATTTATCTT---------AACT
gi|13 : acG-----AGATGGAAAAGCAAGTGATTGCGAT-TTGTAAAAGCTTGCGTATTCACACAATATC-TT-GTG-------------AATTATT------------ATTGGCCTT--ACTT-------TGC---AGAA--TGAA-ATT-TTA-----AAC--------AAAA-------CAAGACCATA-AA-TTCACAACAACTTGTGTTT-------AAAATTAGTGATGT--ACTTCTG-ATT-A---C----AAAATGT-GTATACTAAAAT-TAAAc
gi|10 : tactAATATCTCGTTTTCATTTATTTT---------AACTTCCATTC-ACCTCAGG---AAC---ACAAATCAAA-ATTCTTA-----CATTGGAGAATGAAATTATCATCAAAACAATACCA-TTCCCAGCAATTTGTTTTT-------AAAATTATTGCAGTGAATCTG----CT-T---AC---AGAATTT-GTATACTGCAGC-TAAAAT-AAC-GAC-AAATTAC--GAG-AATTTTT---C--CT---TTAGACCTCGAAATCTTTAATTGAAGATCA-TTT---TGCATGGTCGAA--ACATGT-TTAGAC-ATCTAGGATTACAT----------------GTT-------AAGAAATC----A-----ATTACCCGTGAGCTATGAA---TGAAT--AATTTGC----C-AAATA-ATGAATCCTTC---GT---GTGC-TGTTTTAT-CAA---CA----TTT--AATC--AG-GAT----------ATG----CAAGTTTCCTA-TC-CT----TC--------TATACAAGTCCTTG-ATgaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|11 : ctcccTACTGCAGC-TAAAAT-AAT-GAC-AAATTAT--GAT---TTTTT---T-TTT---TCAAACCTCAAAATTTTTAATTCAAGATTA-TTT---TGTGTGATCAAA--ACATGT-TTAAAC-ATCTAAGGTTACATACAA---A---TTACAGTTTTTGTACAAGAAATC----A-----GTTGCCTGTCAATTATGAA---TGATT--AATTTG-----C-AAATT-ATGAATCCTTT---GT---GTAC-TATTTCAT-CAA---CA----TTT--AGTC--AG-GAG----------ATG----CAAGTTTACTA-TC-CT----TC--------TATACAAGTCCTTG-
gi|14 : ATCAAA--ACATCA-TAAAAT-ATTTCATACTGCATACAATTCC---TTATTCTCCAAGTGCTAGAAATC----AAATCTGTTGTCTGGGATTTTTAAA---CGATTTAAATTCG-----CTGAATT-AT---TCATTC---TTCGGGTGC-TTCTTCTT-CAA---AG----TTTTAAATC--GG-GAGAAT-------ATC----CATGTTTCC-A-TCGCTCTAGTT--------TATACctcataacaaacaaattatgaaatatgttcaaaatattacgctcaaactgtttgcattaaacaat
gi|12 : AGACCATACACAA---CAAATTGTGTTTTAGGTACAAGAACGC----A-----ATTACCTGTGCATTTTGAA-----AA---AATTTtaatttatttttaagctcaattgccaagtaaaca
gi|17 : aattatacagagatggatacgcacctgaatgagattttgtgaacgcttgtctattctcgcaaattctcgcaaaaatttattttcaattattttaactttcattcatcgcagaaatacaaatcaaactgttatattgcataatgaaattattttcaaaacgTGCTTGTGAATTGTGAACTCTGACT--G--TTGCTCGCC-ACAAT-AAAAATCAATC---TC---ATGC-TACTTCAT-CTA---CG----TTT--AGTA--AG-ACA----------AGG----C-AGTTTCCTA-TC-Cagtctggagataaaa
gi|16 : aaaTGTGAATTTTGCA---AGAAT--ATTTTG-----C-----T-AAG----ATAC---AT---ATACTTATTTCATACGATTTCACTTTTTT--CTTC--AA-GAGATATACTAGTATG----CAAGTTTCCTA-TC-CT----TC--------TATACA
gi|19 : -GAG----------ATG----TAAGTTTCATA-TC-CT----TC--------TATA-AAGTCATTG-ACTATA--T-ATA---C
gi|8 : agaAAATTTCAAG-TA-CT----TT--------TGT-TGATTTTTTA-GCTGCAG-T-ATA---TA-A-ATTT--------------TGTAATCAAAAGTACATCA-----ACAATTTTAAACACAATATGCTGGAA----TTGGTCTCGTTTTGTA-GAGAATTTCATTATGCAA--A--G-A---AATAATTTTGATTTG-TA---TTCC---T---G---AGATGGAATGGAAATTAAGACAATTTAAAAC-A-AGATTTCA-CGTGATTT
gi|6 : gacttaaatagagaatgaaaagcagctgattgagaatttattcacgtaC-CT----TCAG------TATACAAATT------TTGTAA-T--CA---AA-A-TTAC--------------T---------------TCA-----ACAATTCTAAACTCAAATTTCTTGGA----ATTGTGTTGTTTT-TATGAGAATTTCATTCTGC----AGTG-T---AAGAATTTTGCTTTG-TG---TTCC---T---G---AGAT-GAATGGAAG-TTAGATAATTAAAGATAA-tacttcaaactggaaattctttaattcaaaatcattattctgcacgattgaaacattataaaacatctaagttacatacagctaatattttatttgtaagaaatcagttagttacctgtgaaatctgaatgattaatttgccacataatgattagttctgtgtgtgctatttggcaacatttaacagagagatgatagtttccgatccttctatataagtcctt
gi|2 : ggaattatattgagaaagaaaggcaactgattgagattttgtgaacgctcgcatattcacgcaaaatctcgcaatatttcgtttcaaTTA-GCTGCAG-T-ATA---CATA-TTTTGTAATAAAAAGAATT---------------TTA-----ACAATTTTGAACACAAATTTCTGGAA----AT-----TATATTGT--GAGAAT-----------------------AAGAATTTTGATTTG-TG---T------TCCTG---AGAT-GAATGGAAGTTCAGATAACTGAAAACGAGATATTGCtgaaataataacaaattatgaaaatgttcaaacctcaatatctttaattcaagatcatttttgcatgatcaaaacacatattttaacatctaagattacatacaacttacagtttatgtacaagaaatgagttgcttgtgtattaagaatgattaatttgcaaattattaatgctttgtgtgctatttcatcaacagttagtctgaggagatggaagtttcttatccttctatataaggtct
gi|10 : ggatttatatagtctagagaagaaaaggcaactgattgagaatttgtgaacgctcgcttattcacgcaaaatctcTTA-GCTGCAG-T-ATA---CA-AATTCTGTAAGCAGA-----T---------------TCACTGCAATAATTTTAAAAACAAATTGCTGGGA----ATGGTATTGTTTTGAT-GATAATTTCATTCTCC----AATG-T---AAGAATTTTGATTTG-TG---TTCC---T---G---AGGT-GAATGGAAGTTAAAATAAATGAAAACGA-aataacgacacgttgcgatacattttctttcatatctaaatatctttaattcaagatgattttgcgtgatcgaaacatattttaacatctaagattacatacaacttacagtttatgtacaagcaatgagttgcccgtgaattatgaatgattaatttataaagtattaatccttcgtgtgctatttcatcaacatttagtcaggagatgccagtttcctatccttctatatacaagtccttgcagtaatatactattttaccaaatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|4 : ctcccaatatc-GTTGCAG-T-ACG---CATA-TTTT--------------TGTAATGTATT-----TCA-----ACAATTTTAA-CACAATTTGCTGAGA----ATGGTCTCATTTTGTA-GATAATTTCAATGTAC----A--A-A---AATA--TTTG-TTTA-TC---T------C----------T-GA--GAA----TGGATATCTTAAAA-GG-AGATTaataacgacaaattacgagaatttttcctttagacctcgaaatctttaattgaagatcattttgcatggtcgaaacatgtttagacatctaggattacatgttaagaaatcaattacccgtgagctatgaatgaataatttgccaaataatgaatccttcgtgtgctgttttatcaacatttaatcaggatatgcaagtttcctatccttctatacaagtccttgat
gi|7 : ggacttatatagagaagggaaagcatgtgattaagatgttatagacgctcgcgtatttacgcaaaatctcgcgaT--------------T---------------GCA-----ACAATTCTAAACACAAATTTCTGGGA----ATGGTATTGTTTTGAT-GAAAATT-CATTCTGC----AGTG-T---AAGAGTTTTAATTTG-TG---TGTTCCCC---G---ACAT-GAATGGAAGTTAAGATAATCAAAAAtgaaaaatcaaggaaaatacttaaacatttacatcaaacttcaatattctaaatttaagatcatttcatatgtttaaaacattattaaactattaaagttatatacaccttacattttatgtaaaagaaatcagtagcctctgaaatttgaataattaatttgccaatttattaattcttcgcatgctattttatcaacatttagtagagatatgtaagtgttccgcccttctatatgtatatataagtccttgcattgaactgatatttaatttaaacgc
gi|5 : aatgatatagaaaacgaaaggcaactgatttggcgcaaaatctcgcaatgtctgg--------------T---------------TCA-----ACAATTTTAAGCACAGTTTGATGGGA----ATGATATTGTTTTGTA-GAGAATTCCATTGTACAA--A--G-A---AAGGATTTTAATTGG-TA---T------T---GCTAAGAT-GAATGGAAGTTAGGATATCTGAAAAtattttttaatataaaatttgtttactgcagctaaaataacgacaatttatgataaatttgcctttaaaacaatatctttaattcaagatcattttgcatgatggaaacaagtttaaacatctaagattaaatgcagcttagagtttatgtacaagaaatctgtgaattatgaataattggcaaataataatccttcatgtgctatttcatcaacattaagtctggagatgcaagtttcctatccttcaattcaagtccttgatcacatggacaattgaataaaccaggtatacac
gi|9 : gacttatatagagaaggaaaagcaactgattaagatgttatgaacgctcgcgcattctcgtaaaatctcggtaaatatag---------------TTA-----ACAATTTTAAACACAAAATGCTGAGA----ATATTATTGTTTTGAT-GAGAATTTCATTTTGCGATTA--A-ATGTAAGAA-TTTGATTTG-TG---TTCC---T---G---AGAT-G-----AAGTTAAGATATTTGAAAATGA-gtactcatgattacaatttttttatactgcaacttaaaatcaaggaaagtactttaaattttactttaaactgcaatatttcaattcaagacaattttgcgtggttaaaacagtacaaaacatctgaggttacatacatcgtatgcgaaagaaatcatttgtcaaattattaattcttcgcatgttattttataaacatttagtagatgagttcgagtttcctactcttctatataagtccttggttcaataaaggtcatatatttttaaaagttcgattataggcaaa
gi|13 : aattataaagagaaggaaaggcaactgactgagattttgtgaacgctcgcgtattcatgcaaaatctctcaataac---------------TCA-----CTAATTTTAAACACAAGTTGTTGTGAATTTATGGTCTTGTTTTGTT-TAAAATTTCATTCTGC----A--A-A---tgtactcttgattatgatatttgtttactgcaactaaaataacaacaaattacgagaaattttacttcaaacctcaatatctttaactcaagatcattctgtgtgattgaaacattttaaaatatctaaaataacatacaacttacatttaaatacaaaaaatcagttgcctgtgcactatgaatgattaatatgccaaataataaatcccttgtgtgctattatatcaacatatagtcacgagatgcaatattccttctgtataagtcctgg
gi|3 : tactgagatggaaaagcaagtgattgcgatttgtaaaagcttgcgtattcacacaatatcttgtgaattattattggccttacCA-----ACAATTTTAAACAAAAATTTCTCAGA----ATGGTATTGTTTTGAT-GAGAATTTCATTATGC----AATG-T---AAGAATTTTAATTTGTCACGTT------CCT-G---AGAT-GAATGGAAGTTAAGATAATTGAAAACGAGATACTGCtgtacttctgattacaaaatgtgtatactaaaattaaagaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|12 : gaattatatagagaaggaagggcaactgattgagattttatgaacgctcgcgtattctctcaaaatctcAAACACAATTTGTTGTGT----ATGGTCTCGTTTTGAA-AATAATTTCATTATGC----A--ATA---TAACAGTTTGATTTG-TA---TTTC---T---G---CGAT-GAATGAAAGTTAAAATAATTGAAAATAA-Acagtacttttgattacaaaatgtgtattctgcagttaaataacgacaaataacgataatttttccttcaaacctcaatatcttaattaaatatcattttgcgtgatcgaaacatgtttaaacatctaagattacatacaacttacagtttatgtacaagaaatcagttgcctgtgaattagaaatgattgatttgcaaattattaatacttcgtgtgctatttcatcaacatttagtcaggagatgcaagttttctatccttatacaagtccttgattatacatatatagtataattatatataagagcggta
gi|15 : aattatacagagatggatacgcacctgaatgagattttgtgaacgcttgtctattctcgcaaattctcgcaaaaaGGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACtaggtacaagaacgcaattacctgtgcattttgaaaaaatttagtctggagataaaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTAACCTTATCCCATTCCATATTTATCGCTTTAAACC
Alignments
lowQualScore : 111111111 1111111 1111111 1111111111 11111111 22 111 1 1 777777 22 1 4 44444444444 11 2 1 2 11 22222 333333333 333 555555
lowQualScore : 0 88888 1 1 3 1 3 333333333 3 9999999 3 1 88888 2 1 3 2 0 7777 0 0 0000000 1 3 555 3 3 0 3 44 6 3 77 77 3 3 999 22 666 3 44 1 3 3 555 0 8888888888 2 555 1 33 4444444 555 2 3 2 555 6666 33 33 2 444 1111111111 5555 2 44444444 1 6 22 1 000 6 2 5 1 5 1 6 22 6 1 333333 6 33 7 6 1 6 0 6 4 3 3 3 3 2 4 3 44444444444 88 55 0 4 4 2 5 0 4 77 99999 888888888 55 2 555 777777
lowQualScore : . ..... . . . . . ......... . ....... . . ..... . . . . . .... . . ....... . . ... . . . . .. . . .. .. . . ... .. ... . .. . . . ... . .......... . ... . .. ....... ... . . . ... .... .. .. . ... .......... .... . ........ . . .. . ... . . . . . . . .. . . ...... . .. . . . . . . . . . . . . . . ........... .. .. . . . . . . . .. ..... ......... .. . ... ......
lowQualScore : 8 33333 2 0 1 8 8 333333333 6 4444444 6 5 33333 2 0 8 0 2 1111 4 9 8888888 7 3 888 3 3 7 1 22 7 3 99 66 3 3 111 66 444 6 66 0 3 3 888 4 4444444444 0 000 1 99 4444444 000 9 8 9 000 1111 99 99 7 777 7777777777 7777 7 33333333 1 3 77 9 000 7 5 0 0 0 0 0 00 0 0 000000 0 00 0 0 0 0 0 0 0 0 0 0 0 5 0 0 55555555555 00 55 0 0 0 5 5 0 0 55 55555 000000000 55 5 000 555555
consensus : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTTCGCGTGCTATTTCAT-CAA---CA----TTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTGGTTACA-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCAT---CGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
Reference ( family-116 ) : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACGATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCTTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTNTGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTTCGTGTGCTATTTCAT-CAA---CA----TTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTGGTTGCA-GTATA---CA-ATTTTTTCAACAATTTTAAACACAANTTGCTGGGAATGGTNTCGTTTTGNNGAGAATTTCATTNTGCAGAAAGAATTTTGATTTGTGTTCCCGAGATGAATGGAAGTTAAGATAATTGAAAACGAANATTGCA-CGTGGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACG
gi|1 : GGAATTATATAG-----AGAAGGAAAGGCAATTGATTGAGATATTGTGAACGTTCGCATATTCACACAAAATCTTG-TAATATCTTGTTTTCAATTATCTT---------AACTGCCATT-CATCTCAGGTA---C---AAAAATCAAA-ATTCTTAAACT-----GTAGAATAAAATTGTCATTAAAACAATACCAT----TCCTGGAAATTTGTGTTT-------AAAATTGTTGAAGTACTTGTG-ATT---TAAAAATT-T-GTATACTGCAGC-T--AAAAT-AATGAC-AAATTAC--GA-TA-AT-TTTTCTTTTTAAACCTCAATATCTTTAATTCAAGATC---A-TTGTGTGTGATCTAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGAAT--AATTTG-C-----A---AA-TTATGAATCATTCATGTGCTATTTCAT-CAA---CA----TTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTT--------TATACAAGTCCTTGGTTGCA-CTATA---CA-ATTTTTTCAACAATTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCAT---CGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTAGTGGTAGAGCGTCTGCCTCACATGTGGAAGGTCGTGGGTTCAATCCCCTGCCGGGTCA-----------TACCA-AAGACTTTAAAAATGGTACTAGAAGC-TTCCTCACTTGACGCTC--AGCATTTAGAGGAGA---------GTTCTAGGCCTGGTCGGCCCGGTGTCAGTATAAGGTGACTGGGTGGGGTATCATACCATG
gi|10 : CTCC-CAATATCTCGTTTTCATTTATTTT---------AACTTCCATT-CACCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GGAGAATGAAATTATCATCAAAACAATACCAT----TCCCAGCAATTTGTTTTT-------AAAATTATTGCAGTGAATCTG-CTT---ACAGAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-GA-AT-TTTTCCTTT-AGACCTCGAAATCTTTAATTGAAGATC---A-TTTTGCATGGTCGAA--ACATGT-TTAGAC-ATCTAGGATTACAT-------------GTT-------AAGAAATC----A-----ATTACCCGTGAGCTATGAA---TGAAT--AATTTGCC-----A---AA-TAATGAATCCTTCGTGTGCTGTTTTAT-CAA---CA----TTT--AATC--AG-GAT---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTGATtgtctgcgacatgatactgcagtgtgacagcgcttagaacactgtctcaagtagacaccgtctgactgaaaaattgttgaaagcaatgctaaatacaatacaacttgaaaatgaaatttcaggcctgtataatagcattatcttttaatattttctgtcatacatgcaatactggtaatcctagaatgtgataaattca
gi|11 : TACTGCAGC-T--AAAAT-AATGAC-AAATTAT--GA-T---T-TTTTTTTTTCAAACCTCAAAATTTTTAATTCAAGATT---A-TTTTGTGTGATCAAA--ACATGT-TTAAAC-ATCTAAGGTTACATACAA---ATTACAGTTTTTGTACAAGAAATC----A-----GTTGCCTGTCAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATGAATCCTTTGTGTACTATTTCAT-CAA---CA----TTT--AGTC--AG-GAG---AT----------G----CAAGTTTACTA-TCCTTC--------TATACAAGTCCTTGCTCATA-ACAAA---CA-AATT
gi|12 : AATTATACAG-----AGATGGATACGCACCTGAATGAGATTTTGTGAACGCTTGTCTATTCTCGCAAATTCTCG-CAAAAATTTATTTTCAATTATTTT---------AACTTTCATT-CATCGCAGAAA---T---ACAAATC-AA-ACTGTTATATT-----GCATAATGAAATTATTTTCAAAACGAGACCAT----ACACAACAAATTGTGTTTTAGGTACAAGAACGC--AATTACCTGTGCATTTTGAAAAAATT-TAGT---CTGGAGA-T--AAAAatgaaatatgttcaaaatattacgctcaaactgtttgcattaaacaat
gi|13 : G-----AGATGGAAAAGCAAGTGATTGCGATTT-GTAAAAGCTTGCGTATTCACACAATATCTTG-TGA
gi|13 : tactCTTACTTT-----GCAGAATGAAATTTTAAACAAAACAAGACCATAAATTCACAACAACTTGTGTTT-------AAAATTAGTGATGTACTTCTG-ATT---ACAAAATG-T-GTATACTAAAAT-T--AAAGA-AAC-----AAGTAA--GA-AA-AT-attattattggccttactttgcagaatgaaattttaaacaaaacaagaccataaattcacaacaacttgtgtttaaaattagtgatgtacttctgattacaaaatgtgtatactaaaattaaagaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|14 : tactgagatggaaaagcaagtgattgcgatttgtaaaagcttgcgtattcacacaatatcttgtgaattattattggcATCAAA--ACATCA-TAAAAT-ATTTCATACTGCATACAATTCCTTATTCTCCAAGTGCTAGAAATC----AAATCTGTTGTCTGGGATTTTTAAA---CGATTTAAATTCG-CT----G---AA-TTATTCATTCTTCGGGTGCTTCTTCTT-CAA---AG----TTTTAAATC--GG-GAGAATAT----------C----CATGTTTCC-A-TCGCTC--------TAgtatctaaattattcagaattgaaat
gi|15 : GGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACGgtttatactaatttatttttaagctcaattgccaagtaaaca
gi|16 : agTGTGAATTTTGCA---AGAAT--ATTTTG-CT----A---AG-ATACATATACTT--------ATTTCATACGATTTCACTTTTTT--CTTC--AA-GAG---ATATACTAGTATG----CAAGTTTCCTA-TCCTTC--------TATACA
gi|17 : TGCTTGTGAATTGTGAACTCTGACT--G--TTG-CTCGCCA---CA-ATAAAAATCAATCTCATGCTACTTCAT-CTA---CG----TTT--AGTA--AG-ACA---AG----------G----CA-GTTTCCTA-TCC
gi|18 : aaaTTATATTG-----AAAAGGAAACTCAACTCGTTTGCCTTTTGTAAAAGCTGG-GTATTCATGCAAA--CTCATCGA-ATTTCATTTTCATTTATCTT---------AACT
gi|19 : ac-GAG---AT----------G----TAAGTTTCATA-TCCTTC--------TATA-AAGTCATTGACTATA--TATA---Cc
gi|2 : agaGGATTTATATAGTCTAGAGAAGAAAAGGCAACTGATTGAGAATTTGTGAACGCTCGCTTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAGTTATCTG---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTA--------------------TTCTCA------CAATATAAT----TTCCAGAAATTTGTGTTC-------AAAATTGTTAAAATTCTTTTT-ATT---ACAAAATA-T-GTATACTGCAGC-T--AAAAT-AACGAC-ACGTTGC--GA-TACAT-TTTC--TTTCATATCTAAATATCTTTAATTCAAGATG---A-TTTTGCGTGATCGAA--ACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGCAATG----A-----GTTGCCCGTGAATTATGAA---TGATT--AATTTA-T-----A---AA-GTATTAATCCTTCGTGTGCTATTTCAT-CAA---CA----TTT--AGTC--AG-GAG---AT----------G----CCAGTTTCCTA-TCCTTCTA------TATACAAGTCCTT-GCAGTA-ATATA---CT-ATTTTACCAA
gi|3 : GAATTATATAG-----AGAAGGAAGGGCAACTGATTGAGATTTTATGAACGCTCGCGTATTCTCTCAAAATCTCG-CAGTATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---CGTGACAAATTAAA-ATTCTTACATT-----GCATAATGAAATTCTCATCAAAACAATACCAT----TCTGAGAAATTTTTGTTT-------AAAATTGTTGCAGTACTTTTG-ATT---ACAAAATG-T-GTATTCTGCAGT-T--AAA-T-AACGAC-AAATAAC--GA-TA-AT-TTTTCCTT-CAAACCTCAATATCTT-AATTAAATATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTAGAAA---TGATT--GATTTG-C-----A---AA-TTATTAATACTTCGTGTGCTATTTCAT-CAA---CA----TTT--AGTC--AG-GAG---AT----------G----CAAGTTTTCTA-TCCT----------TATACAAGTCCTTGATTATACATATA---TA-GTatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|4 : GGACTTATATAG-----AGAAGGGAAAGCATGTGATTAAGATGTTATAGACGCTCGCGTATTTACGCAAAATCTCG-CGAAATCTCCTTTTAAGATATC-----------------CATT-C---TCAG--A---G---ATAAA-CAAATATTTTT----------GTACATTGAAATTATCTACAAAATGAGACCAT----TCTCAGCAAATTGTGTT--------AAAATTGTTGAAATAC------ATT---ACAAAAATAT-GCGTACTGCAAC-TGAAAAATCAAGGA--AAAT-AC--TT-AA-ACATTTACAT--CAAACTTCAATATTCTAAATTTAAGATC---A-TTTCATATGTTTAAA--ACATTA-TTAAACTAT-TAAAGTTATATACAC---CTTACATTTTATGTAAAAGAAATC----A-----GTAGCCTCTGAAATTTGAA---TAATT--AATTTG-C-----C---AATTTATTAATTCTTCGCATGCTATTTTAT-CAA---CA----TTT--AGTA--GA-GAT---AT----------G----TAAGTGTTCCG-CCCTTCTATATGTATATATAAGTCCTTGataattatatataagagcggta
gi|5 : GACTTATATAG-----AGAAGGAAAAGCAACTGATTAAGATGTTATGAACGCTCGCGCATTCTCGTAAAATCTCG-GTAAATATAGTTTTCAGATATCCT---------AACTTCCATT-CATCTTAGCAA---T---ACCAATTAAA-ATCCTTTCTTT-----GTACAATGGAATTCTCTACAAAACAATATCAT----TCCCATCAAACTGTGCTT-------AAAATTGTTGAAGTACTCATG-ATT---ACAATTTT-T-TTATACTGCAACTT--AAAATCAAGG---AAAGTACT-TT-AA-AT-TTTACTTT--AAACTGCAATAT-TTCAATTCAAGACA---A-TTTTGCGTGGTTAAA--ACA-GTACAAAAC-ATCTGAGGTTACATACAT---C-----G--TATGCGAAAGAAATC----A-----TTTGTC------------------------------------A---AA-TTATTAATTCTTCGCATGTTATTTTAT-AAA---CA----TTT--AGT-------AG---AT----------GAGTTCGAGTTTCCTA-CTCTTC--------TATATAAGTCCTTGGTT-CA-ATAAAGGTCATATATTTTTAAAAGTTcattgaactgatatttaatttaaacgc
gi|6 : GGAATTATATTG-----AGAAAGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCATATTCACGCAAAATCTCG-CAATATTTCGTTT-CAATTATCTTTAATTATCTAACTTCCATT-CATCTCAGGAA---C---ACAAAGCAAA-ATTCTTACACT-----GCAGAATGAAATTCTCATAAAAACAACACAAT----TCCAAGAAATTTGAGTTT-------AGAATTGTTGAAGTAATTTTG-ATT---ACAAAATT-T-GTATACTGAAGG-T--GAAAT-AATAAC-AAATTAT--GA-AA-A-------TGTTCAAACCTCAATATCTTTAATTCAAGATC---ATTTTTGCATGATCAAAACACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATG----A-----GTTGCTTGTGTATTAAGAA---TGATT--AATTTG-C-----A---AA-TTATTAATGCTTTGTGTGCTATTTCAT-CAA---CA----GTT--AGTCTGAG-GAG---AT----------G----GAAGTTTCTTA-TCCTTC--------TATATAAGcgattataggcaaa
gi|7 : AATGATATAG-----AAAACGAAAGGCAACTGATT---------TGG---------------CGCAAAATCTCG-CAATGTCTGGTTTTTGATTATCTT---------AACTTCCATT-CATGTCGGGGAACAC---ACAAATTAAA-ACTCTTACACT-----GCAGAATGAA-TTTTCATCAAAACAATACCAT----TCCCAGAAATTTGTGTTT-------AGAATTGTTGCAATATTTTTT-AAT---ATAAAATT-T-GTTTACTGCAGC-T--AAAAT-AACGAC-AATTTAT--GA-TA-AA-TTTGCCTTTAAAA---CAATATCTTTAATTCAAGATC---A-TTTTGCATGATGGAA--ACAAGT-TTAAAC-ATCTAAGATTAAATGCAG---CTTAGAGTTTATGTACAAGAAAT----------------CTGTGAATTATGAA-------T--AATTGG-C-----A---AA-TAAT-AATCCTTCATGTGCTATTTCAT-CAA---CA----TTA--AGTC--TG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------AATTCAAGTCCTTGATCACA--TGGA---CA-ATTgtct
gi|8 : GACTTAAATAG-----AGAATGAAAAGCAGCTGATTGAGAATT--------------TATTCACGTAAAATCACG-TGAAATCTTGTTTTAAATTGTCTT---------AATTTCCATTCCATCTCAGGAA---T---ACAAATCAAA-ATTATTTCTTT-----GCATAATGAAATTCTCTACAAAACGAGACCAA----TTCCAGCATATTGTGTTT-------AAAATTGTTGATGTACTTTTG-ATT---ACAAAATT-T-ATATACTGCAGC-T--AAAAA-ATCAACAAAAGTACTTGA--A-AT-TTTAC--TTCAAACTGGAAATTCTTTAATTCAAAATCATTA-TTCTGCACGATTGAA--ACATTA-TAAAAC-ATCTAAG-TTACATACAG---CTAATATTTTATTTGTAAGAAATCAGTTA-----GTTACCTGTGAAATCTGAA---TGATT--AATTTGCC-----ACATAA-TGATTAGTTCTGTGTGTGCTATTT-GG-CAA---CA----TTT--AA-C--AGAGAG---AT----------G----ATAGTTTCCGA-TCCTTC--------TATATAAGTCCTTgaataaaccaggtatacac
gi|9 : AATTATAAAG-----AGAAGGAAAGGCAACTGACTGAGATTTTGTGAACGCTCGCGTATTCATGCAAAATCTCT-CAATAACTCATTTTCAAATATCTT---------AACTTC------ATCTCAGGAA---C---ACAAATCAAA--TTCTTACATTTAATCGCAAAATGAAATTCTCATCAAAACAATAATAT----TCTCAGCATTTTGTGTTT-------AAAATTGTTAATGTACTCTTG-ATT---ATGATATT-T-GTTTACTGCAAC-T--AAAAT-AACAAC-AAATTAC--GAGAA-AT-TTTAC--TTCAAACCTCAATATCTTTAACTCAAGATC---A-TTCTGTGTGATTGAA--ACATTT-TAAAAT-ATCTAAAATAACATACAA---CTTACA-TTTAAATACAAAAAATC----A-----GTTGCCTGTGCACTATGAA---TGATT--AATATGCC-----A---AA-TAATAAATCCCTTGTGTGCTATTATAT-CAA---CA----TAT--AGTC--AC-GAG---AT----------G----CAA------TATTCCTTC--------TGTATAAGTCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAACCTTATCCCATTCCATATTTATCGCTTTAAACC
Alignments
lowQualScore : 111111111 1111111 111 1111111 1111111111 11111111 222222222222 44444444444 11 1 1 1 11 1 11 333333333 222 222222
lowQualScore : 0 88888 1 1 3 1 3 333333333 3 9999999 3 1 88888 2 1 3 0 7777 0 0 0000000 1 3 555 3 3 0 3 44 6 3 44 77 3 3 000 2 666 3 44 1 3 3 555 0 8888888888 1 555 1 33 4444444 555 2 3 33 2 33 33 2 444 1111111111 5555 2 44444444 888888888888 0 888 5 1 1 1 1 1 1 1 1 1 44444444444 66 22 5 1 1 1 5 5 1 77 5 88 888888888 22 1 111 888888
lowQualScore : . ..... . . . . . ......... . ....... . . ..... . . . . .... . . ....... . . ... . . . . .. . . .. .. . . ... . ... . .. . . . ... . .......... . ... . .. ....... ... . . .. . .. .. . ... .......... .... . ........ ............ . ... . . . . . . . . . . ........... .. .. . . . . . . . .. . .. ......... .. . ... ......
lowQualScore : 8 33333 2 0 1 8 8 333333333 6 4444444 6 5 33333 2 0 8 2 1111 4 9 8888888 7 3 888 3 3 7 1 22 7 3 66 66 3 3 666 8 444 6 66 0 3 3 888 4 4444444444 1 000 1 99 4444444 000 9 8 99 1 99 99 7 777 7777777777 7777 7 33333333 999999999999 5 888 7 0 0 0 0 0 0 0 0 0 55555555555 55 00 5 0 0 0 5 0 0 55 5 55 000000000 00 0 000 000000
consensus : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG--ATT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
Reference ( family-116 ) : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG--GTT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
gi|1 : GGAATTATATAG-----AGAAGGAAAGGCAATTGATTGAGATATTGTGAACGTTCGCATATTCACACAAAATCTTG-TAATATCTTGTTTTCAATTATCTT---------AACTGCCATT-CATCTCAGGTA---C---AAAAATCAAA-ATTCTTAAACT-----GTAGAATAAAATTGTCATTAAAACAATACCAT----TCCTGGAAATTTGTGTTT-------AAAATTGTTGAAGTACTTGTG-ATT---TAAAAATT-T-GTATACTGCAGC-T--AAAAT-AATGAC-AAATTAC--GA-TA-AT-TTTTCTTTTTAAACCTCAATATCTTTAATTCAAGATC---A-TTGTGTGTGATCTAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGAAT--AATTTG-C-----A---AA-TTATGAATCATT--CATGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTT--------TATACAAGTCCTTG--GTT--GC-A-CTATA---CA-ATTTTTTCAACAATTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTAGTGGTAGAGCGTCTGCCTCACATGTGGAAGGTCGTGGGTTCAATCCCCTGCCGGGTCA-----------TACCA-AAGACTTTAAAAATGGTACTAGAAGC-TTCCTCACTTGACGCTC--AGCATTTAGAGGAGA---------GTTCTAGGCCTGGTCGGCCCGGTGTCAGTATAAGGTGACTGGGTGGGGTATCATACCATG
gi|10 : CTCC-CAATATCTCGTTTTCATTTATTTT---------AACTTCCATT-CACCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GGAGAATGAAATTATCATCAAAACAATACCAT----TCCCAGCAATTTGTTTTT-------AAAATTATTGCAGTGAATCTG-CTT---ACAGAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-GA-AT-TTTTCCTTT-AGACCTCGAAATCTTTAATTGAAGATC---A-TTTTGCATGGTCGAA--ACATGT-TTAGAC-ATCTAGGATTACAT-------------GTT-------AAGAAATC----A-----ATTACCCGTGAGCTATGAA---TGAAT--AATTTGCC-----A---AA-TAATGAATCCTT--CGTGTGCTGTTTTATCAACATTT--AATC--AG-GAT---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG--ATtgtctgcgacatgatactgcagtgtgacagcgcttagaacactgtctcaagtagacaccgtctgactgaaaaattgttgaaagcaatgctaaatacaatacaacttgaaaatgaaatttcaggcctgtataatagcattatcttttaatattttctgtcatacatgcaatactggtaatcctagaatgtgataaattca
gi|11 : TACTGCAGC-T--AAAAT-AATGAC-AAATTAT--GA-T---T-TTTTTTTTTCAAACCTCAAAATTTTTAATTCAAGATT---A-TTTTGTGTGATCAAA--ACATGT-TTAAAC-ATCTAAGGTTACATACAA---ATTACAGTTTTTGTACAAGAAATC----A-----GTTGCCTGTCAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATGAATCCTT--TGTGTACTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTACTA-TCCTTC--------TATACAAGTCCTTG--CTC--AT-A-ACAAA---CA-AATT
gi|12 : AATTATACAG-----AGATGGATACGCACCTGAATGAGATTTTGTGAACGCTTGTCTATTCTCGCAAATTCTCG-CAAAAATTTATTTTCAATTATTTT---------AACTTTCATT-CATCGCAGAAA---T---ACAAATC-AA-ACTGTTATATT-----GCATAATGAAATTATTTTCAAAACGAGACCAT----ACACAACAAATTGTGTTTTAGGTACAAGAACGC--AATTACCTGTGCATTTTGAAAAAATT-TAGT---CTGGAGA-T--AAAAatgaaatatgttcaaaatattacgctcaaactgtttgcattaaacaat
gi|13 : G-----AGATGGAAAAGCAAGTGATTGCGATTT-GTAAAAGCTTGCGTATTCACACAATATCTTG-TGA
gi|13 : tactCTTACTTT-----GCAGAATGAAATTTTAAACAAAACAAGACCATAAATTCACAACAACTTGTGTTT-------AAAATTAGTGATGTACTTCTG-ATT---ACAAAATG-T-GTATACTAAAAT-T--AAAGA-AAC-----AAGTAA--GA-AA-AT-attattattggccttactttgcagaatgaaattttaaacaaaacaagaccataaattcacaacaacttgtgtttaaaattagtgatgtacttctgattacaaaatgtgtatactaaaattaaagaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|14 : tactgagatggaaaagcaagtgattgcgatttgtaaaagcttgcgtattcacacaatatcttgtgaattattattggcATCAAA--ACATCA-TAAAAT-ATTTCATACTGCATACAATTCCTTATTCTCCAAGTGCTAGAAATC----AAATCTGTTGTCTGGGATTTTTAAA---CGATTTAAATTCG-CT----G---AA-TTATTCATTCTT--CGGGTGCTTCTTCTTCAAAGTTTTAAATC--GG-GAGAATAT----------C----CATGTTTCC-A-TCGCTC--------TAgtatctaaattattcagaattgaaat
gi|15 : GGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACGgtttatactaatttatttttaagctcaattgccaagtaaaca
gi|16 : agTGTGAATTTTGCA---AGAAT--ATTTTG-CT----A---AG-ATACATATACTTATTTCATACGATTTCACT--TTTTT--CTTC--AA-GAG---ATATACTAGTATG----CAAGTTTCCTA-TCCTTC--------TATACA
gi|17 : TGCTTGTGAATTGTGAACTCTGACT--G--TTG-CTCGCCA---CA-ATAAAAATCAAT--CTCATGCTACTTCATCTACGTTT--AGTA--AG-ACA---AG----------G----CA-GTTTCCTA-TCC
gi|18 : aaaTTATATTG-----AAAAGGAAACTCAACTCGTTTGCCTTTTGTAAAAGCTGG-GTATTCATGCAAA--CTCATCGA-ATTTCATTTTCATTTATCTT---------AACT
gi|19 : ac-GAG---AT----------G----TAAGTTTCATA-TCCTTC--------TATA-AAGTCATTG--ACT--AT---ATATA---Cc
gi|2 : agaGGATTTATATAGTCTAGAGAAGAAAAGGCAACTGATTGAGAATTTGTGAACGCTCGCTTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAGTTATCTG---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTA--------------------TTCTCA------CAATATAAT----TTCCAGAAATTTGTGTTC-------AAAATTGTTAAAATTCTTTTT-ATT---ACAAAATA-T-GTATACTGCAGC-T--AAAAT-AACGAC-ACGTTGC--GA-TACAT-TTT--CTTTCATATCTAAATATCTTTAATTCAAGATG---A-TTTTGCGTGATCGAA--ACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGCAATG----A-----GTTGCCCGTGAATTATGAA---TGATT--AATTTA-T-----A---AA-GTATTAATCCTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CCAGTTTCCTA-TCCTTCTA------TATACAAGTCCTTGCAGT------A-ATATA---CT-ATTTTACCAA
gi|3 : GAATTATATAG-----AGAAGGAAGGGCAACTGATTGAGATTTTATGAACGCTCGCGTATTCTCTCAAAATCTCG-CAGTATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---CGTGACAAATTAAA-ATTCTTACATT-----GCATAATGAAATTCTCATCAAAACAATACCAT----TCTGAGAAATTTTTGTTT-------AAAATTGTTGCAGTACTTTTG-ATT---ACAAAATG-T-GTATTCTGCAGT-T--AAA-T-AACGAC-AAATAAC--GA-TA-AT-TTTTCCTT-CAAACCTCAATATCTT-AATTAAATATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTAGAAA---TGATT--GATTTG-C-----A---AA-TTATTAATACTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTTCTA-TCCT----------TATACAAGTCCTTG--ATT--AT-ACATATA---TA-GTatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|4 : GGACTTATATAG-----AGAAGGGAAAGCATGTGATTAAGATGTTATAGACGCTCGCGTATTTACGCAAAATCTCG-CGAAATCTCCTTTTAAGATATC-----------------CATT-C---TCAG--A---G---ATAAA-CAAATATTTTT----------GTACATTGAAATTATCTACAAAATGAGACCAT----TCTCAGCAAATTGTGTT--------AAAATTGTTGAAATAC------ATT---ACAAAAATAT-GCGTACTGCAAC-TGAAAAATCAAGGA--AAAT-AC--TT-AA-ACATTTACAT--CAAACTTCAATATTCTAAATTTAAGATC---A-TTTCATATGTTTAAA--ACATTA-TTAAACTAT-TAAAGTTATATACAC---CTTACATTTTATGTAAAAGAAATC----A-----GTAGCCTCTGAAATTTGAA---TAATT--AATTTG-C-----C---AATTTATTAATTCTT--CGCATGCTATTTTATCAACATTT--AGTA--GA-GAT---AT----------G----TAAGTGTTCCG-CCCTTCTATATGTATATATAAGTCCTTGC-ATTGAACTG-ATATT---TA-ATTTataattatatataagagcggta
gi|5 : GACTTATATAG-----AGAAGGAAAAGCAACTGATTAAGATGTTATGAACGCTCGCGCATTCTCGTAAAATCTCG-GTAAATATAGTTTTCAGATATCCT---------AACTTCCATT-CATCTTAGCAA---T---ACCAATTAAA-ATCCTTTCTTT-----GTACAATGGAATTCTCTACAAAACAATATCAT----TCCCATCAAACTGTGCTT-------AAAATTGTTGAAGTACTCATG-ATT---ACAATTTT-T-TTATACTGCAACTT--AAAATCAAGG---AAAGTAC--TT-TA-AA-TTTTACTTT-AAACTGCAATAT-TTCAATTCAAGACA---A-TTTTGCGTGGTTAAA--ACA-GTACAAAAC-ATCTGAGGTTACATACAT---C-----G--TATGCGAAAGAAATC----A-----TTTGTC------------------------------------A---AA-TTATTAATTCTT--CGCATGTTATTTTATAAACATTT--AGT-------AG---AT----------GAGTTCGAGTTTCCTA-CTCTTC--------TATATAAGTCCTTG--GTT---C-A-ATAAAGGTCATATATTTTTAAAAGTTaaacgc
gi|6 : GGAATTATATTG-----AGAAAGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCATATTCACGCAAAATCTCG-CAATATTTCGTTT-CAATTATCTTTAATTATCTAACTTCCATT-CATCTCAGGAA---C---ACAAAGCAAA-ATTCTTACACT-----GCAGAATGAAATTCTCATAAAAACAACACAAT----TCCAAGAAATTTGAGTTT-------AGAATTGTTGAAGTAATTTTG-ATT---ACAAAATT-T-GTATACTGAAGG-T--GAAAT-AATAAC-AAATTAT--GA-AA-AT-------GTTCAAACCTCAATATCTTTAATTCAAGATC---ATTTTTGCATGATCAAAACACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATG----A-----GTTGCTTGTGTATTAAGAA---TGATT--AATTTG-C-----A---AA-TTATTAATGCTT--TGTGTGCTATTTCATCAACAGTT--AGTCTGAG-GAG---AT----------G----GAAGTTTCTTA-TCCTTC--------TATATAAGcgattataggcaaa
gi|7 : AATGATATAG-----AAAACGAAAGGCAACTGATT---------TGG---------------CGCAAAATCTCG-CAATGTCTGGTTTTTGATTATCTT---------AACTTCCATT-CATGTCGGGGAACAC---ACAAATTAAA-ACTCTTACACT-----GCAGAATGAA-TTTTCATCAAAACAATACCAT----TCCCAGAAATTTGTGTTT-------AGAATTGTTGCAATATTTTTT-AAT---ATAAAATT-T-GTTTACTGCAGC-T--AAAAT-AACGAC-AATTTAT--GA-TA-AA-TTTGCCTTTAAAA---CAATATCTTTAATTCAAGATC---A-TTTTGCATGATGGAA--ACAAGT-TTAAAC-ATCTAAGATTAAATGCAG---CTTAGAGTTTATGTACAAGAAAT----------------CTGTGAATTATGAA-------T--AATTGG-C-----A---AA-TAAT-AATCCTT--CATGTGCTATTTCATCAACATTA--AGTC--TG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------AATTCAAGTCCTTG--ATC--AC---ATGGA---CA-ATTgtct
gi|8 : GACTTAAATAG-----AGAATGAAAAGCAGCTGATTGAGAATT--------------TATTCACGTAAAATCACG-TGAAATCTTGTTTTAAATTGTCTT---------AATTTCCATTCCATCTCAGGAA---T---ACAAATCAAA-ATTATTTCTTT-----GCATAATGAAATTCTCTACAAAACGAGACCAA----TTCCAGCATATTGTGTTT-------AAAATTGTTGATGTACTTTTG-ATT---ACAAAATT-T-ATATACTGCAGC-T--AAAAA-ATCAACAAAAGTACTTGA--A-AT-TTTAC--TTCAAACTGGAAATTCTTTAATTCAAAATCATTA-TTCTGCACGATTGAA--ACATTA-TAAAAC-ATCTAAG-TTACATACAG---CTAATATTTTATTTGTAAGAAATCAGTTA-----GTTACCTGTGAAATCTGAA---TGATT--AATTTGCC-----ACATAA-TGATTAGTTCTG--TGTGTGCTATTT-GGCAACATTT--AA-C--AGAGAG---AT----------G----ATAGTTTCCGA-TCCTTC--------TATATAAGTCCTTgaataaaccaggtatacac
gi|9 : AATTATAAAG-----AGAAGGAAAGGCAACTGACTGAGATTTTGTGAACGCTCGCGTATTCATGCAAAATCTCT-CAATAACTCATTTTCAAATATCTT---------AACTTC------ATCTCAGGAA---C---ACAAATCAAA--TTCTTACATTTAATCGCAAAATGAAATTCTCATCAAAACAATAATAT----TCTCAGCATTTTGTGTTT-------AAAATTGTTAATGTACTCTTG-ATT---ATGATATT-T-GTTTACTGCAAC-T--AAAAT-AACAAC-AAATTAC--GAGAA-AT-TTTAC--TTCAAACCTCAATATCTTTAACTCAAGATC---A-TTCTGTGTGATTGAA--ACATTT-TAAAAT-ATCTAAAATAACATACAA---CTTACA-TTTAAATACAAAAAATC----A-----GTTGCCTGTGCACTATGAA---TGATT--AATATGCC-----A---AA-TAATAAATCCCT--TGTGTGCTATTATATCAACATAT--AGTC--AC-GAG---AT----------G----CAA------TATTCCTTC--------TGTATAAGTCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAACCTTATCCCATTCCATATTTATCGCTTTAAACC
Alignments
lowQualScore : 111111111 1111111 111 1111111 1111111111 11111111 2222222 44444444444 11 1 1 1 11 1 11 333333333 222 222222
lowQualScore : 0 88888 1 1 3 1 3 333333333 3 9999999 3 1 88888 2 1 3 0 7777 0 0 0000000 1 3 555 3 3 0 3 44 6 3 44 77 3 3 000 2 666 3 44 1 3 3 555 0 8888888888 1 555 1 33 4444444 555 2 3 33 2 33 33 2 444 1111111111 5555 2 44444444 8 6666666 0 888 5 1 1 1 1 1 1 1 1 1 44444444444 66 22 5 1 1 1 5 5 1 77 5 88 888888888 22 1 111 888888
lowQualScore : . ..... . . . . . ......... . ....... . . ..... . . . . .... . . ....... . . ... . . . . .. . . .. .. . . ... . ... . .. . . . ... . .......... . ... . .. ....... ... . . .. . .. .. . ... .......... .... . ........ . ....... . ... . . . . . . . . . . ........... .. .. . . . . . . . .. . .. ......... .. . ... ......
lowQualScore : 8 33333 2 0 1 8 8 333333333 6 4444444 6 5 33333 2 0 8 2 1111 4 9 8888888 7 3 888 3 3 7 1 22 7 3 66 66 3 3 666 8 444 6 66 0 3 3 888 4 4444444444 1 000 1 99 4444444 000 9 8 99 1 99 99 7 777 7777777777 7777 7 33333333 9 2222222 5 888 7 0 0 0 0 0 0 0 0 0 55555555555 55 00 5 0 0 0 5 0 0 55 5 55 000000000 00 0 000 000000
consensus : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
Reference ( family-116 ) : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
gi|1 : GGAATTATATAG-----AGAAGGAAAGGCAATTGATTGAGATATTGTGAACGTTCGCATATTCACACAAAATCTTG-TAATATCTTGTTTTCAATTATCTT---------AACTGCCATT-CATCTCAGGTA---C---AAAAATCAAA-ATTCTTAAACT-----GTAGAATAAAATTGTCATTAAAACAATACCAT----TCCTGGAAATTTGTGTTT-------AAAATTGTTGAAGTACTTGTG-ATT---TAAAAATT-T-GTATACTGCAGC-T--AAAAT-AATGAC-AAATTAC--GA-TA-AT-TTTTCTTTTTAAACCTCAATATCTTTAATTCAAGATC---A-TTGTGTGTGATCTAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGAAT--AATTTG-C-----A---AA-TTATGAATCATT--CATGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTT--------TATACAAGTCCTTG-GTT--GC-A-CTATA---CA-ATTTTTTCAACAATTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTAGTGGTAGAGCGTCTGCCTCACATGTGGAAGGTCGTGGGTTCAATCCCCTGCCGGGTCA-----------TACCA-AAGACTTTAAAAATGGTACTAGAAGC-TTCCTCACTTGACGCTC--AGCATTTAGAGGAGA---------GTTCTAGGCCTGGTCGGCCCGGTGTCAGTATAAGGTGACTGGGTGGGGTATCATACCATG
gi|10 : CTCC-CAATATCTCGTTTTCATTTATTTT---------AACTTCCATT-CACCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GGAGAATGAAATTATCATCAAAACAATACCAT----TCCCAGCAATTTGTTTTT-------AAAATTATTGCAGTGAATCTG-CTT---ACAGAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-GA-AT-TTTTCCTTT-AGACCTCGAAATCTTTAATTGAAGATC---A-TTTTGCATGGTCGAA--ACATGT-TTAGAC-ATCTAGGATTACAT-------------GTT-------AAGAAATC----A-----ATTACCCGTGAGCTATGAA---TGAAT--AATTTGCC-----A---AA-TAATGAATCCTT--CGTGTGCTGTTTTATCAACATTT--AATC--AG-GAT---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATtgtctgcgacatgatactgcagtgtgacagcgcttagaacactgtctcaagtagacaccgtctgactgaaaaattgttgaaagcaatgctaaatacaatacaacttgaaaatgaaatttcaggcctgtataatagcattatcttttaatattttctgtcatacatgcaatactggtaatcctagaatgtgataaattca
gi|11 : TACTGCAGC-T--AAAAT-AATGAC-AAATTAT--GA-T---T-TTTTTTTTTCAAACCTCAAAATTTTTAATTCAAGATT---A-TTTTGTGTGATCAAA--ACATGT-TTAAAC-ATCTAAGGTTACATACAA---ATTACAGTTTTTGTACAAGAAATC----A-----GTTGCCTGTCAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATGAATCCTT--TGTGTACTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTACTA-TCCTTC--------TATACAAGTCCTTG-CTC--AT-A-ACAAA---CA-AATT
gi|12 : AATTATACAG-----AGATGGATACGCACCTGAATGAGATTTTGTGAACGCTTGTCTATTCTCGCAAATTCTCG-CAAAAATTTATTTTCAATTATTTT---------AACTTTCATT-CATCGCAGAAA---T---ACAAATC-AA-ACTGTTATATT-----GCATAATGAAATTATTTTCAAAACGAGACCAT----ACACAACAAATTGTGTTTTAGGTACAAGAACGC--AATTACCTGTGCATTTTGAAAAAATT-TAGT---CTGGAGA-T--AAAAatgaaatatgttcaaaatattacgctcaaactgtttgcattaaacaat
gi|13 : G-----AGATGGAAAAGCAAGTGATTGCGATTT-GTAAAAGCTTGCGTATTCACACAATATCTTG-TGA
gi|13 : tactCTTACTTT-----GCAGAATGAAATTTTAAACAAAACAAGACCATAAATTCACAACAACTTGTGTTT-------AAAATTAGTGATGTACTTCTG-ATT---ACAAAATG-T-GTATACTAAAAT-T--AAAGA-AAC-----AAGTAA--GA-AA-AT-attattattggccttactttgcagaatgaaattttaaacaaaacaagaccataaattcacaacaacttgtgtttaaaattagtgatgtacttctgattacaaaatgtgtatactaaaattaaagaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|14 : tactgagatggaaaagcaagtgattgcgatttgtaaaagcttgcgtattcacacaatatcttgtgaattattattggcATCAAA--ACATCA-TAAAAT-ATTTCATACTGCATACAATTCCTTATTCTCCAAGTGCTAGAAATC----AAATCTGTTGTCTGGGATTTTTAAA---CGATTTAAATTCG-CT----G---AA-TTATTCATTCTT--CGGGTGCTTCTTCTTCAAAGTTTTAAATC--GG-GAGAATAT----------C----CATGTTTCC-A-TCGCTC--------TAgtatctaaattattcagaattgaaat
gi|15 : GGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACGgtttatactaatttatttttaagctcaattgccaagtaaaca
gi|16 : agTGTGAATTTTGCA---AGAAT--ATTTTG-CT----A---AG-ATACATATACTTATTTCATACGATTTCACT--TTTTT--CTTC--AA-GAG---ATATACTAGTATG----CAAGTTTCCTA-TCCTTC--------TATACA
gi|17 : TGCTTGTGAATTGTGAACTCTGACT--G--TTG-CTCGCCA---CA-ATAAAAATCAAT--CTCATGCTACTTCATCTACGTTT--AGTA--AG-ACA---AG----------G----CA-GTTTCCTA-TCC
gi|18 : aaaTTATATTG-----AAAAGGAAACTCAACTCGTTTGCCTTTTGTAAAAGCTGG-GTATTCATGCAAA--CTCATCGA-ATTTCATTTTCATTTATCTT---------AACT
gi|19 : ac-GAG---AT----------G----TAAGTTTCATA-TCCTTC--------TATA-AAGTCATTG-ACT--AT---ATATA---Cc
gi|2 : agaGGATTTATATAGTCTAGAGAAGAAAAGGCAACTGATTGAGAATTTGTGAACGCTCGCTTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAGTTATCTG---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTA--------------------TTCTCA------CAATATAAT----TTCCAGAAATTTGTGTTC-------AAAATTGTTAAAATTCTTTTT-ATT---ACAAAATA-T-GTATACTGCAGC-T--AAAAT-AACGAC-ACGTTGC--GA-TACAT-TTT--CTTTCATATCTAAATATCTTTAATTCAAGATG---A-TTTTGCGTGATCGAA--ACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGCAATG----A-----GTTGCCCGTGAATTATGAA---TGATT--AATTTA-T-----A---AA-GTATTAATCCTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CCAGTTTCCTA-TCCTTCTA------TATACAAGTCCTTGCAGT-----A-ATATA---CT-ATTTTACCAA
gi|3 : GAATTATATAG-----AGAAGGAAGGGCAACTGATTGAGATTTTATGAACGCTCGCGTATTCTCTCAAAATCTCG-CAGTATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---CGTGACAAATTAAA-ATTCTTACATT-----GCATAATGAAATTCTCATCAAAACAATACCAT----TCTGAGAAATTTTTGTTT-------AAAATTGTTGCAGTACTTTTG-ATT---ACAAAATG-T-GTATTCTGCAGT-T--AAA-T-AACGAC-AAATAAC--GA-TA-AT-TTTTCCTT-CAAACCTCAATATCTT-AATTAAATATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTAGAAA---TGATT--GATTTG-C-----A---AA-TTATTAATACTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTTCTA-TCCT----------TATACAAGTCCTTG-ATT--AT-ACATATA---TA-GTatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|4 : GGACTTATATAG-----AGAAGGGAAAGCATGTGATTAAGATGTTATAGACGCTCGCGTATTTACGCAAAATCTCG-CGAAATCTCCTTTTAAGATATC-----------------CATT-C---TCAG--A---G---ATAAA-CAAATATTTTT----------GTACATTGAAATTATCTACAAAATGAGACCAT----TCTCAGCAAATTGTGTT--------AAAATTGTTGAAATAC------ATT---ACAAAAATAT-GCGTACTGCAAC-TGAAAAATCAAGGA--AAAT-AC--TT-AA-ACATTTACAT--CAAACTTCAATATTCTAAATTTAAGATC---A-TTTCATATGTTTAAA--ACATTA-TTAAACTAT-TAAAGTTATATACAC---CTTACATTTTATGTAAAAGAAATC----A-----GTAGCCTCTGAAATTTGAA---TAATT--AATTTG-C-----C---AATTTATTAATTCTT--CGCATGCTATTTTATCAACATTT--AGTA--GA-GAT---AT----------G----TAAGTGTTCCG-CCCTTCTATATGTATATATAAGTCCTTGCATTGAACTG-ATATT---TA-ATTTataattatatataagagcggta
gi|5 : GACTTATATAG-----AGAAGGAAAAGCAACTGATTAAGATGTTATGAACGCTCGCGCATTCTCGTAAAATCTCG-GTAAATATAGTTTTCAGATATCCT---------AACTTCCATT-CATCTTAGCAA---T---ACCAATTAAA-ATCCTTTCTTT-----GTACAATGGAATTCTCTACAAAACAATATCAT----TCCCATCAAACTGTGCTT-------AAAATTGTTGAAGTACTCATG-ATT---ACAATTTT-T-TTATACTGCAACTT--AAAATCAAGG---AAAGTAC--TT-TA-AA-TTTTACTTT-AAACTGCAATAT-TTCAATTCAAGACA---A-TTTTGCGTGGTTAAA--ACA-GTACAAAAC-ATCTGAGGTTACATACAT---C-----G--TATGCGAAAGAAATC----A-----TTTGTC------------------------------------A---AA-TTATTAATTCTT--CGCATGTTATTTTATAAACATTT--AGT-------AG---AT----------GAGTTCGAGTTTCCTA-CTCTTC--------TATATAAGTCCTTG-GTT---C-A-ATAAAGGTCATATATTTTTAAAAGTTaaacgc
gi|6 : GGAATTATATTG-----AGAAAGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCATATTCACGCAAAATCTCG-CAATATTTCGTTT-CAATTATCTTTAATTATCTAACTTCCATT-CATCTCAGGAA---C---ACAAAGCAAA-ATTCTTACACT-----GCAGAATGAAATTCTCATAAAAACAACACAAT----TCCAAGAAATTTGAGTTT-------AGAATTGTTGAAGTAATTTTG-ATT---ACAAAATT-T-GTATACTGAAGG-T--GAAAT-AATAAC-AAATTAT--GA-AA-AT-------GTTCAAACCTCAATATCTTTAATTCAAGATC---ATTTTTGCATGATCAAAACACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATG----A-----GTTGCTTGTGTATTAAGAA---TGATT--AATTTG-C-----A---AA-TTATTAATGCTT--TGTGTGCTATTTCATCAACAGTT--AGTCTGAG-GAG---AT----------G----GAAGTTTCTTA-TCCTTC--------TATATAAGcgattataggcaaa
gi|7 : AATGATATAG-----AAAACGAAAGGCAACTGATT---------TGG---------------CGCAAAATCTCG-CAATGTCTGGTTTTTGATTATCTT---------AACTTCCATT-CATGTCGGGGAACAC---ACAAATTAAA-ACTCTTACACT-----GCAGAATGAA-TTTTCATCAAAACAATACCAT----TCCCAGAAATTTGTGTTT-------AGAATTGTTGCAATATTTTTT-AAT---ATAAAATT-T-GTTTACTGCAGC-T--AAAAT-AACGAC-AATTTAT--GA-TA-AA-TTTGCCTTTAAAA---CAATATCTTTAATTCAAGATC---A-TTTTGCATGATGGAA--ACAAGT-TTAAAC-ATCTAAGATTAAATGCAG---CTTAGAGTTTATGTACAAGAAAT----------------CTGTGAATTATGAA-------T--AATTGG-C-----A---AA-TAAT-AATCCTT--CATGTGCTATTTCATCAACATTA--AGTC--TG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------AATTCAAGTCCTTG-ATC--AC---ATGGA---CA-ATTgtct
gi|8 : GACTTAAATAG-----AGAATGAAAAGCAGCTGATTGAGAATT--------------TATTCACGTAAAATCACG-TGAAATCTTGTTTTAAATTGTCTT---------AATTTCCATTCCATCTCAGGAA---T---ACAAATCAAA-ATTATTTCTTT-----GCATAATGAAATTCTCTACAAAACGAGACCAA----TTCCAGCATATTGTGTTT-------AAAATTGTTGATGTACTTTTG-ATT---ACAAAATT-T-ATATACTGCAGC-T--AAAAA-ATCAACAAAAGTACTTGA--A-AT-TTTAC--TTCAAACTGGAAATTCTTTAATTCAAAATCATTA-TTCTGCACGATTGAA--ACATTA-TAAAAC-ATCTAAG-TTACATACAG---CTAATATTTTATTTGTAAGAAATCAGTTA-----GTTACCTGTGAAATCTGAA---TGATT--AATTTGCC-----ACATAA-TGATTAGTTCTG--TGTGTGCTATTT-GGCAACATTT--AA-C--AGAGAG---AT----------G----ATAGTTTCCGA-TCCTTC--------TATATAAGTCCTTgaataaaccaggtatacac
gi|9 : AATTATAAAG-----AGAAGGAAAGGCAACTGACTGAGATTTTGTGAACGCTCGCGTATTCATGCAAAATCTCT-CAATAACTCATTTTCAAATATCTT---------AACTTC------ATCTCAGGAA---C---ACAAATCAAA--TTCTTACATTTAATCGCAAAATGAAATTCTCATCAAAACAATAATAT----TCTCAGCATTTTGTGTTT-------AAAATTGTTAATGTACTCTTG-ATT---ATGATATT-T-GTTTACTGCAAC-T--AAAAT-AACAAC-AAATTAC--GAGAA-AT-TTTAC--TTCAAACCTCAATATCTTTAACTCAAGATC---A-TTCTGTGTGATTGAA--ACATTT-TAAAAT-ATCTAAAATAACATACAA---CTTACA-TTTAAATACAAAAAATC----A-----GTTGCCTGTGCACTATGAA---TGATT--AATATGCC-----A---AA-TAATAAATCCCT--TGTGTGCTATTATATCAACATAT--AGTC--AC-GAG---AT----------G----CAA------TATTCCTTC--------TGTATAAGTCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAACCTTATCCCATTCCATATTTATCGCTTTAAACC
Alignments
lowQualScore : 111111111 1111111 111 1111111 1111111111 11111111 2222222 44444444444 11 1 1 1 11 1 11 333333333 222 222222
lowQualScore : 0 88888 1 1 3 1 3 333333333 3 9999999 3 1 88888 2 1 3 0 7777 0 0 0000000 1 3 555 3 3 0 3 44 6 3 44 77 3 3 000 2 666 3 44 1 3 3 555 0 8888888888 1 555 1 33 4444444 555 2 3 33 2 33 33 2 444 1111111111 5555 2 44444444 8 6666666 0 888 5 1 1 1 1 1 1 1 1 1 44444444444 66 22 5 1 1 1 5 5 1 77 5 88 888888888 22 1 111 888888
lowQualScore : . ..... . . . . . ......... . ....... . . ..... . . . . .... . . ....... . . ... . . . . .. . . .. .. . . ... . ... . .. . . . ... . .......... . ... . .. ....... ... . . .. . .. .. . ... .......... .... . ........ . ....... . ... . . . . . . . . . . ........... .. .. . . . . . . . .. . .. ......... .. . ... ......
lowQualScore : 8 33333 2 0 1 8 8 333333333 6 4444444 6 5 33333 2 0 8 2 1111 4 9 8888888 7 3 888 3 3 7 1 22 7 3 66 66 3 3 666 8 444 6 66 0 3 3 888 4 4444444444 1 000 1 99 4444444 000 9 8 99 1 99 99 7 777 7777777777 7777 7 33333333 9 2222222 5 888 7 0 0 0 0 0 0 0 0 0 55555555555 55 00 5 0 0 0 5 0 0 55 5 55 000000000 00 0 000 000000
consensus : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
Reference ( family-116 ) : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
gi|1 : GGAATTATATAG-----AGAAGGAAAGGCAATTGATTGAGATATTGTGAACGTTCGCATATTCACACAAAATCTTG-TAATATCTTGTTTTCAATTATCTT---------AACTGCCATT-CATCTCAGGTA---C---AAAAATCAAA-ATTCTTAAACT-----GTAGAATAAAATTGTCATTAAAACAATACCAT----TCCTGGAAATTTGTGTTT-------AAAATTGTTGAAGTACTTGTG-ATT---TAAAAATT-T-GTATACTGCAGC-T--AAAAT-AATGAC-AAATTAC--GA-TA-AT-TTTTCTTTTTAAACCTCAATATCTTTAATTCAAGATC---A-TTGTGTGTGATCTAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGAAT--AATTTG-C-----A---AA-TTATGAATCATT--CATGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTT--------TATACAAGTCCTTG-GTT--GC-A-CTATA---CA-ATTTTTTCAACAATTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTAGTGGTAGAGCGTCTGCCTCACATGTGGAAGGTCGTGGGTTCAATCCCCTGCCGGGTCA-----------TACCA-AAGACTTTAAAAATGGTACTAGAAGC-TTCCTCACTTGACGCTC--AGCATTTAGAGGAGA---------GTTCTAGGCCTGGTCGGCCCGGTGTCAGTATAAGGTGACTGGGTGGGGTATCATACCATG
gi|10 : CTCC-CAATATCTCGTTTTCATTTATTTT---------AACTTCCATT-CACCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GGAGAATGAAATTATCATCAAAACAATACCAT----TCCCAGCAATTTGTTTTT-------AAAATTATTGCAGTGAATCTG-CTT---ACAGAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-GA-AT-TTTTCCTTT-AGACCTCGAAATCTTTAATTGAAGATC---A-TTTTGCATGGTCGAA--ACATGT-TTAGAC-ATCTAGGATTACAT-------------GTT-------AAGAAATC----A-----ATTACCCGTGAGCTATGAA---TGAAT--AATTTGCC-----A---AA-TAATGAATCCTT--CGTGTGCTGTTTTATCAACATTT--AATC--AG-GAT---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATtgtctgcgacatgatactgcagtgtgacagcgcttagaacactgtctcaagtagacaccgtctgactgaaaaattgttgaaagcaatgctaaatacaatacaacttgaaaatgaaatttcaggcctgtataatagcattatcttttaatattttctgtcatacatgcaatactggtaatcctagaatgtgataaattca
gi|11 : TACTGCAGC-T--AAAAT-AATGAC-AAATTAT--GA-T---T-TTTTTTTTTCAAACCTCAAAATTTTTAATTCAAGATT---A-TTTTGTGTGATCAAA--ACATGT-TTAAAC-ATCTAAGGTTACATACAA---ATTACAGTTTTTGTACAAGAAATC----A-----GTTGCCTGTCAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATGAATCCTT--TGTGTACTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTACTA-TCCTTC--------TATACAAGTCCTTG-CTC--AT-A-ACAAA---CA-AATT
gi|12 : AATTATACAG-----AGATGGATACGCACCTGAATGAGATTTTGTGAACGCTTGTCTATTCTCGCAAATTCTCG-CAAAAATTTATTTTCAATTATTTT---------AACTTTCATT-CATCGCAGAAA---T---ACAAATC-AA-ACTGTTATATT-----GCATAATGAAATTATTTTCAAAACGAGACCAT----ACACAACAAATTGTGTTTTAGGTACAAGAACGC--AATTACCTGTGCATTTTGAAAAAATT-TAGT---CTGGAGA-T--AAAAatgaaatatgttcaaaatattacgctcaaactgtttgcattaaacaat
gi|13 : G-----AGATGGAAAAGCAAGTGATTGCGATTT-GTAAAAGCTTGCGTATTCACACAATATCTTG-TGA
gi|13 : tactCTTACTTT-----GCAGAATGAAATTTTAAACAAAACAAGACCATAAATTCACAACAACTTGTGTTT-------AAAATTAGTGATGTACTTCTG-ATT---ACAAAATG-T-GTATACTAAAAT-T--AAAGA-AAC-----AAGTAA--GA-AA-AT-attattattggccttactttgcagaatgaaattttaaacaaaacaagaccataaattcacaacaacttgtgtttaaaattagtgatgtacttctgattacaaaatgtgtatactaaaattaaagaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|14 : tactgagatggaaaagcaagtgattgcgatttgtaaaagcttgcgtattcacacaatatcttgtgaattattattggcATCAAA--ACATCA-TAAAAT-ATTTCATACTGCATACAATTCCTTATTCTCCAAGTGCTAGAAATC----AAATCTGTTGTCTGGGATTTTTAAA---CGATTTAAATTCG-CT----G---AA-TTATTCATTCTT--CGGGTGCTTCTTCTTCAAAGTTTTAAATC--GG-GAGAATAT----------C----CATGTTTCC-A-TCGCTC--------TAgtatctaaattattcagaattgaaat
gi|15 : GGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACGgtttatactaatttatttttaagctcaattgccaagtaaaca
gi|16 : agTGTGAATTTTGCA---AGAAT--ATTTTG-CT----A---AG-ATACATATACTTATTTCATACGATTTCACT--TTTTT--CTTC--AA-GAG---ATATACTAGTATG----CAAGTTTCCTA-TCCTTC--------TATACA
gi|17 : TGCTTGTGAATTGTGAACTCTGACT--G--TTG-CTCGCCA---CA-ATAAAAATCAAT--CTCATGCTACTTCATCTACGTTT--AGTA--AG-ACA---AG----------G----CA-GTTTCCTA-TCC
gi|18 : aaaTTATATTG-----AAAAGGAAACTCAACTCGTTTGCCTTTTGTAAAAGCTGG-GTATTCATGCAAA--CTCATCGA-ATTTCATTTTCATTTATCTT---------AACT
gi|19 : ac-GAG---AT----------G----TAAGTTTCATA-TCCTTC--------TATA-AAGTCATTG-ACT--AT---ATATA---Cc
gi|2 : agaGGATTTATATAGTCTAGAGAAGAAAAGGCAACTGATTGAGAATTTGTGAACGCTCGCTTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAGTTATCTG---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTA--------------------TTCTCA------CAATATAAT----TTCCAGAAATTTGTGTTC-------AAAATTGTTAAAATTCTTTTT-ATT---ACAAAATA-T-GTATACTGCAGC-T--AAAAT-AACGAC-ACGTTGC--GA-TACAT-TTT--CTTTCATATCTAAATATCTTTAATTCAAGATG---A-TTTTGCGTGATCGAA--ACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGCAATG----A-----GTTGCCCGTGAATTATGAA---TGATT--AATTTA-T-----A---AA-GTATTAATCCTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CCAGTTTCCTA-TCCTTCTA------TATACAAGTCCTTGCAGT-----A-ATATA---CT-ATTTTACCAA
gi|3 : GAATTATATAG-----AGAAGGAAGGGCAACTGATTGAGATTTTATGAACGCTCGCGTATTCTCTCAAAATCTCG-CAGTATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---CGTGACAAATTAAA-ATTCTTACATT-----GCATAATGAAATTCTCATCAAAACAATACCAT----TCTGAGAAATTTTTGTTT-------AAAATTGTTGCAGTACTTTTG-ATT---ACAAAATG-T-GTATTCTGCAGT-T--AAA-T-AACGAC-AAATAAC--GA-TA-AT-TTTTCCTT-CAAACCTCAATATCTT-AATTAAATATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTAGAAA---TGATT--GATTTG-C-----A---AA-TTATTAATACTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTTCTA-TCCT----------TATACAAGTCCTTG-ATT--AT-ACATATA---TA-GTatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|4 : GGACTTATATAG-----AGAAGGGAAAGCATGTGATTAAGATGTTATAGACGCTCGCGTATTTACGCAAAATCTCG-CGAAATCTCCTTTTAAGATATC-----------------CATT-C---TCAG--A---G---ATAAA-CAAATATTTTT----------GTACATTGAAATTATCTACAAAATGAGACCAT----TCTCAGCAAATTGTGTT--------AAAATTGTTGAAATAC------ATT---ACAAAAATAT-GCGTACTGCAAC-TGAAAAATCAAGGA--AAAT-AC--TT-AA-ACATTTACAT--CAAACTTCAATATTCTAAATTTAAGATC---A-TTTCATATGTTTAAA--ACATTA-TTAAACTAT-TAAAGTTATATACAC---CTTACATTTTATGTAAAAGAAATC----A-----GTAGCCTCTGAAATTTGAA---TAATT--AATTTG-C-----C---AATTTATTAATTCTT--CGCATGCTATTTTATCAACATTT--AGTA--GA-GAT---AT----------G----TAAGTGTTCCG-CCCTTCTATATGTATATATAAGTCCTTGCATTGAACTG-ATATT---TA-ATTTataattatatataagagcggta
gi|5 : GACTTATATAG-----AGAAGGAAAAGCAACTGATTAAGATGTTATGAACGCTCGCGCATTCTCGTAAAATCTCG-GTAAATATAGTTTTCAGATATCCT---------AACTTCCATT-CATCTTAGCAA---T---ACCAATTAAA-ATCCTTTCTTT-----GTACAATGGAATTCTCTACAAAACAATATCAT----TCCCATCAAACTGTGCTT-------AAAATTGTTGAAGTACTCATG-ATT---ACAATTTT-T-TTATACTGCAACTT--AAAATCAAGG---AAAGTAC--TT-TA-AA-TTTTACTTT-AAACTGCAATAT-TTCAATTCAAGACA---A-TTTTGCGTGGTTAAA--ACA-GTACAAAAC-ATCTGAGGTTACATACAT---C-----G--TATGCGAAAGAAATC----A-----TTTGTC------------------------------------A---AA-TTATTAATTCTT--CGCATGTTATTTTATAAACATTT--AGT-------AG---AT----------GAGTTCGAGTTTCCTA-CTCTTC--------TATATAAGTCCTTG-GTT---C-A-ATAAAGGTCATATATTTTTAAAAGTTaaacgc
gi|6 : GGAATTATATTG-----AGAAAGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCATATTCACGCAAAATCTCG-CAATATTTCGTTT-CAATTATCTTTAATTATCTAACTTCCATT-CATCTCAGGAA---C---ACAAAGCAAA-ATTCTTACACT-----GCAGAATGAAATTCTCATAAAAACAACACAAT----TCCAAGAAATTTGAGTTT-------AGAATTGTTGAAGTAATTTTG-ATT---ACAAAATT-T-GTATACTGAAGG-T--GAAAT-AATAAC-AAATTAT--GA-AA-AT-------GTTCAAACCTCAATATCTTTAATTCAAGATC---ATTTTTGCATGATCAAAACACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATG----A-----GTTGCTTGTGTATTAAGAA---TGATT--AATTTG-C-----A---AA-TTATTAATGCTT--TGTGTGCTATTTCATCAACAGTT--AGTCTGAG-GAG---AT----------G----GAAGTTTCTTA-TCCTTC--------TATATAAGcgattataggcaaa
gi|7 : AATGATATAG-----AAAACGAAAGGCAACTGATT---------TGG---------------CGCAAAATCTCG-CAATGTCTGGTTTTTGATTATCTT---------AACTTCCATT-CATGTCGGGGAACAC---ACAAATTAAA-ACTCTTACACT-----GCAGAATGAA-TTTTCATCAAAACAATACCAT----TCCCAGAAATTTGTGTTT-------AGAATTGTTGCAATATTTTTT-AAT---ATAAAATT-T-GTTTACTGCAGC-T--AAAAT-AACGAC-AATTTAT--GA-TA-AA-TTTGCCTTTAAAA---CAATATCTTTAATTCAAGATC---A-TTTTGCATGATGGAA--ACAAGT-TTAAAC-ATCTAAGATTAAATGCAG---CTTAGAGTTTATGTACAAGAAAT----------------CTGTGAATTATGAA-------T--AATTGG-C-----A---AA-TAAT-AATCCTT--CATGTGCTATTTCATCAACATTA--AGTC--TG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------AATTCAAGTCCTTG-ATC--AC---ATGGA---CA-ATTgtct
gi|8 : GACTTAAATAG-----AGAATGAAAAGCAGCTGATTGAGAATT--------------TATTCACGTAAAATCACG-TGAAATCTTGTTTTAAATTGTCTT---------AATTTCCATTCCATCTCAGGAA---T---ACAAATCAAA-ATTATTTCTTT-----GCATAATGAAATTCTCTACAAAACGAGACCAA----TTCCAGCATATTGTGTTT-------AAAATTGTTGATGTACTTTTG-ATT---ACAAAATT-T-ATATACTGCAGC-T--AAAAA-ATCAACAAAAGTACTTGA--A-AT-TTTAC--TTCAAACTGGAAATTCTTTAATTCAAAATCATTA-TTCTGCACGATTGAA--ACATTA-TAAAAC-ATCTAAG-TTACATACAG---CTAATATTTTATTTGTAAGAAATCAGTTA-----GTTACCTGTGAAATCTGAA---TGATT--AATTTGCC-----ACATAA-TGATTAGTTCTG--TGTGTGCTATTT-GGCAACATTT--AA-C--AGAGAG---AT----------G----ATAGTTTCCGA-TCCTTC--------TATATAAGTCCTTgaataaaccaggtatacac
gi|9 : AATTATAAAG-----AGAAGGAAAGGCAACTGACTGAGATTTTGTGAACGCTCGCGTATTCATGCAAAATCTCT-CAATAACTCATTTTCAAATATCTT---------AACTTC------ATCTCAGGAA---C---ACAAATCAAA--TTCTTACATTTAATCGCAAAATGAAATTCTCATCAAAACAATAATAT----TCTCAGCATTTTGTGTTT-------AAAATTGTTAATGTACTCTTG-ATT---ATGATATT-T-GTTTACTGCAAC-T--AAAAT-AACAAC-AAATTAC--GAGAA-AT-TTTAC--TTCAAACCTCAATATCTTTAACTCAAGATC---A-TTCTGTGTGATTGAA--ACATTT-TAAAAT-ATCTAAAATAACATACAA---CTTACA-TTTAAATACAAAAAATC----A-----GTTGCCTGTGCACTATGAA---TGATT--AATATGCC-----A---AA-TAATAAATCCCT--TGTGTGCTATTATATCAACATAT--AGTC--AC-GAG---AT----------G----CAA------TATTCCTTC--------TGTATAAGTCCT
blockSeqs : TCTAG T C T A T TAATTATCT C CGTG T A TAATC G A T AAAT TAGGTAC C C TTG A A T GA C A TT GA C A TCC C ATT T AC G A T TTC AAATCT A CTC A TA CTCGCC CAT T G AT T TA TG A AAT ATACTAGTAT AGTT T TATATGTA C GAACTG GGT T A T T T T T G A T ATATGATAATG CT AG . T T C T . A CG . . TTACTGGTT AG G . .
blockSeqs : . T G . A A . . ACAC . A . T A T . . G . . . . . . C . . G . . TTT C . . . G . . . AGTTA A . T . CC . . G . T . . . . . . . TA C ATAC . .
blockSeqs : . T G . G T . . C . T . G T A . . C . . . . . . . . . T . . TCC C . . . C . . . A T . T . CT . . T . G . . . . . . . . . ATA . .
blockSeqs : . T T . G T . . T . A . T C T . . T . . . . . . . . . A . . ACA C . . . A . . . A T . A . CT . . A . C . . . . . . . . . AT . .
blockSeqs : . T G . A A . . C . T . C C A . . T . . . . . . . . . T . . TAC C . . . G . . . A G . C . CC . . A . C . . . . . . . . . CA . .
blockSeqs : . T G . A A . . G . A . C A A . . A . . . . . . . . . T . . GCC A . . . T . . . A A . T . CC . . T . T . . . . . . . . . AC . .
blockSeqs : . T G . G T . . T . A . G C T . . T . . . . . . . . . A . . AC C . . . G . . . A A . T . C . . T . T . . . . . . . . . A .
blockSeqs : . T A . T T . . C . T . G C T . . T . . . . . . . . . T . . AC C . . . A . . . A T . T . T . . T . C . . . . . . . . .
blockSeqs : . . G . A A . . T . A . T T A . . T . . . . . . . . . A . . C . . . . G . . . A A . T . C . . T . C . . . . . . . .
blockSeqs : . . . . A T . . C . . . A C T . . T . . . . . . . . . T . . . . . . . T . . . A A . T . C . . T . T . . . . . . . .
blockSeqs : . . . . G . . . . . C . . . . . . . . . . . . . . . . . T . . . . C . T . C . . T . T . . . . . . . .
blockSeqs : . A . . A . . . C . . A . T . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ATA****
originalCons : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATT--AC-A-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
finalCons : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATTATA----ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAACCTTATCCCATTCCATATTTATCGCTTTAAACC
Alignments
lowQualScore : 111111111 1111111 111 1111111 1111111111 11111111 22222222222 44444444444 11 1 1 1 11 1 11 333333333 222 222222
lowQualScore : 0 88888 1 1 3 1 3 333333333 3 9999999 3 1 88888 2 1 3 0 7777 0 0 0000000 1 3 555 3 3 0 3 44 6 3 44 77 3 3 000 2 666 3 44 1 3 3 555 0 8888888888 1 555 1 33 4444444 555 2 3 33 2 33 33 2 444 1111111111 5555 2 44444444 00000000000 0 888 5 1 1 1 1 1 1 1 1 1 44444444444 66 22 5 1 1 1 5 5 1 77 5 88 888888888 22 1 111 888888
lowQualScore : . ..... . . . . . ......... . ....... . . ..... . . . . .... . . ....... . . ... . . . . .. . . .. .. . . ... . ... . .. . . . ... . .......... . ... . .. ....... ... . . .. . .. .. . ... .......... .... . ........ ........... . ... . . . . . . . . . . ........... .. .. . . . . . . . .. . .. ......... .. . ... ......
lowQualScore : 8 33333 2 0 1 8 8 333333333 6 4444444 6 5 33333 2 0 8 2 1111 4 9 8888888 7 3 888 3 3 7 1 22 7 3 66 66 3 3 666 8 444 6 66 0 3 3 888 4 4444444444 1 000 1 99 4444444 000 9 8 99 1 99 99 7 777 7777777777 7777 7 33333333 00000000000 5 888 7 0 0 0 0 0 0 0 0 0 55555555555 55 00 5 0 0 0 5 0 0 55 5 55 000000000 00 0 000 000000
consensus : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATCG---TA-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
Reference ( family-116 ) : GGAATTATATAG-----AGAAGGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCGTATTCACGCAAAATCTCG-CGATATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GCANAATGAAATTCTCATCAAAACAATACCAT----TCCCAGCAATTTGTGTTT-------AAAATTGTTGAAGTACTTTTG-ATT---ACAAAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-NA-AT-TTTNCCTTTCAAACCTCAATATCTTTAATTCAAGATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATNAATCCTT--CGCGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATTA---TA-ATATA---CA-ATTTTTTCAANAGTTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTNGTGGTGGAGCNTCTGCCTCACATNTNGGAGNTNGTGGGTTCGANCCCCTNCCGGGTCAATATGATAATGTACCNTAAGANNTCAAAAATGGCACTNGNANCTTTCCTCACTNGACGCTCCGAGCATTTAGAGGAGATTACTGGTTGTTCTGGGNNTGGTCGGCNCGGTGTCAGTACAAGGTGGCTGGGTGGGGCACCATACCACG
gi|1 : GGAATTATATAG-----AGAAGGAAAGGCAATTGATTGAGATATTGTGAACGTTCGCATATTCACACAAAATCTTG-TAATATCTTGTTTTCAATTATCTT---------AACTGCCATT-CATCTCAGGTA---C---AAAAATCAAA-ATTCTTAAACT-----GTAGAATAAAATTGTCATTAAAACAATACCAT----TCCTGGAAATTTGTGTTT-------AAAATTGTTGAAGTACTTGTG-ATT---TAAAAATT-T-GTATACTGCAGC-T--AAAAT-AATGAC-AAATTAC--GA-TA-AT-TTTTCTTTTTAAACCTCAATATCTTTAATTCAAGATC---A-TTGTGTGTGATCTAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTATGAA---TGAAT--AATTTG-C-----A---AA-TTATGAATCATT--CATGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTCCTA-TCCTTT--------TATACAAGTCCTTG-GTTG---CA-CTATA---CA-ATTTTTTCAACAATTGTAAACACAATTTTCTGGGAATGGTTTCATTTTGTAGAGAATTCCATTGTGCAGAAAGAATTTTGATTTGCATCGAGATGAATGAAAGTTTGGATATTTGAAAATGAAGACTGCAGCATGGTCTAGTGGTAGAGCGTCTGCCTCACATGTGGAAGGTCGTGGGTTCAATCCCCTGCCGGGTCA-----------TACCA-AAGACTTTAAAAATGGTACTAGAAGC-TTCCTCACTTGACGCTC--AGCATTTAGAGGAGA---------GTTCTAGGCCTGGTCGGCCCGGTGTCAGTATAAGGTGACTGGGTGGGGTATCATACCATG
gi|10 : CTCC-CAATATCTCGTTTTCATTTATTTT---------AACTTCCATT-CACCTCAGGAA---C---ACAAATCAAA-ATTCTTACATT-----GGAGAATGAAATTATCATCAAAACAATACCAT----TCCCAGCAATTTGTTTTT-------AAAATTATTGCAGTGAATCTG-CTT---ACAGAATT-T-GTATACTGCAGC-T--AAAAT-AACGAC-AAATTAC--GA-GA-AT-TTTTCCTTT-AGACCTCGAAATCTTTAATTGAAGATC---A-TTTTGCATGGTCGAA--ACATGT-TTAGAC-ATCTAGGATTACAT-------------GTT-------AAGAAATC----A-----ATTACCCGTGAGCTATGAA---TGAAT--AATTTGCC-----A---AA-TAATGAATCCTT--CGTGTGCTGTTTTATCAACATTT--AATC--AG-GAT---AT----------G----CAAGTTTCCTA-TCCTTC--------TATACAAGTCCTTG-ATtgtctgcgacatgatactgcagtgtgacagcgcttagaacactgtctcaagtagacaccgtctgactgaaaaattgttgaaagcaatgctaaatacaatacaacttgaaaatgaaatttcaggcctgtataatagcattatcttttaatattttctgtcatacatgcaatactggtaatcctagaatgtgataaattca
gi|11 : TACTGCAGC-T--AAAAT-AATGAC-AAATTAT--GA-T---T-TTTTTTTTTCAAACCTCAAAATTTTTAATTCAAGATT---A-TTTTGTGTGATCAAA--ACATGT-TTAAAC-ATCTAAGGTTACATACAA---ATTACAGTTTTTGTACAAGAAATC----A-----GTTGCCTGTCAATTATGAA---TGATT--AATTTG-C-----A---AA-TTATGAATCCTT--TGTGTACTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTACTA-TCCTTC--------TATACAAGTCCTTG-CTCA---TA-ACAAA---CA-AATT
gi|12 : AATTATACAG-----AGATGGATACGCACCTGAATGAGATTTTGTGAACGCTTGTCTATTCTCGCAAATTCTCG-CAAAAATTTATTTTCAATTATTTT---------AACTTTCATT-CATCGCAGAAA---T---ACAAATC-AA-ACTGTTATATT-----GCATAATGAAATTATTTTCAAAACGAGACCAT----ACACAACAAATTGTGTTTTAGGTACAAGAACGC--AATTACCTGTGCATTTTGAAAAAATT-TAGT---CTGGAGA-T--AAAAatgaaatatgttcaaaatattacgctcaaactgtttgcattaaacaat
gi|13 : G-----AGATGGAAAAGCAAGTGATTGCGATTT-GTAAAAGCTTGCGTATTCACACAATATCTTG-TGA
gi|13 : tactCTTACTTT-----GCAGAATGAAATTTTAAACAAAACAAGACCATAAATTCACAACAACTTGTGTTT-------AAAATTAGTGATGTACTTCTG-ATT---ACAAAATG-T-GTATACTAAAAT-T--AAAGA-AAC-----AAGTAA--GA-AA-AT-attattattggccttactttgcagaatgaaattttaaacaaaacaagaccataaattcacaacaacttgtgtttaaaattagtgatgtacttctgattacaaaatgtgtatactaaaattaaagaaacaagtaagaaaatgtatctaaattattcagaattgaaat
gi|14 : tactgagatggaaaagcaagtgattgcgatttgtaaaagcttgcgtattcacacaatatcttgtgaattattattggcATCAAA--ACATCA-TAAAAT-ATTTCATACTGCATACAATTCCTTATTCTCCAAGTGCTAGAAATC----AAATCTGTTGTCTGGGATTTTTAAA---CGATTTAAATTCG-CT----G---AA-TTATTCATTCTT--CGGGTGCTTCTTCTTCAAAGTTTTAAATC--GG-GAGAATAT----------C----CATGTTTCC-A-TCGCTC--------TAgtatctaaattattcagaattgaaat
gi|15 : GGTCTTGTGGTGGAGCTTCTATCTTACATTTTAGAGTTGGTGGGTTTGAACCTTTTCTAAGTCAATATGATAATGTACCCTAAGAAGTC-AAAATGGCACTTGTACCTTTTTTCA-TAGATATTCCGAGC-TT--GAAAAGATTACTGGTTGTTCTGGGAGTGGTTGGCGCGGTATC---ACAAAGTGGTT------GGCACCATATCACGgtttatactaatttatttttaagctcaattgccaagtaaaca
gi|16 : agTGTGAATTTTGCA---AGAAT--ATTTTG-CT----A---AG-ATACATATACTTATTTCATACGATTTCACT--TTTTT--CTTC--AA-GAG---ATATACTAGTATG----CAAGTTTCCTA-TCCTTC--------TATACA
gi|17 : TGCTTGTGAATTGTGAACTCTGACT--G--TTG-CTCGCCA---CA-ATAAAAATCAAT--CTCATGCTACTTCATCTACGTTT--AGTA--AG-ACA---AG----------G----CA-GTTTCCTA-TCC
gi|18 : aaaTTATATTG-----AAAAGGAAACTCAACTCGTTTGCCTTTTGTAAAAGCTGG-GTATTCATGCAAA--CTCATCGA-ATTTCATTTTCATTTATCTT---------AACT
gi|19 : ac-GAG---AT----------G----TAAGTTTCATA-TCCTTC--------TATA-AAGTCATTG-ACTA---T--ATATA---Cc
gi|2 : agaGGATTTATATAGTCTAGAGAAGAAAAGGCAACTGATTGAGAATTTGTGAACGCTCGCTTATTCACGCAAAATCTCG-CAATATCTCGTTTTCAGTTATCTG---------AACTTCCATT-CATCTCAGGAA---C---ACAAATCAAA-ATTCTTA--------------------TTCTCA------CAATATAAT----TTCCAGAAATTTGTGTTC-------AAAATTGTTAAAATTCTTTTT-ATT---ACAAAATA-T-GTATACTGCAGC-T--AAAAT-AACGAC-ACGTTGC--GA-TACAT-TTT--CTTTCATATCTAAATATCTTTAATTCAAGATG---A-TTTTGCGTGATCGAA--ACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGCAATG----A-----GTTGCCCGTGAATTATGAA---TGATT--AATTTA-T-----A---AA-GTATTAATCCTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CCAGTTTCCTA-TCCTTCTA------TATACAAGTCCTTGCA--G---TA-ATATA---CT-ATTTTACCAA
gi|3 : GAATTATATAG-----AGAAGGAAGGGCAACTGATTGAGATTTTATGAACGCTCGCGTATTCTCTCAAAATCTCG-CAGTATCTCGTTTTCAATTATCTT---------AACTTCCATT-CATCTCAGGAA---CGTGACAAATTAAA-ATTCTTACATT-----GCATAATGAAATTCTCATCAAAACAATACCAT----TCTGAGAAATTTTTGTTT-------AAAATTGTTGCAGTACTTTTG-ATT---ACAAAATG-T-GTATTCTGCAGT-T--AAA-T-AACGAC-AAATAAC--GA-TA-AT-TTTTCCTT-CAAACCTCAATATCTT-AATTAAATATC---A-TTTTGCGTGATCGAA--ACATGT-TTAAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATC----A-----GTTGCCTGTGAATTAGAAA---TGATT--GATTTG-C-----A---AA-TTATTAATACTT--CGTGTGCTATTTCATCAACATTT--AGTC--AG-GAG---AT----------G----CAAGTTTTCTA-TCCT----------TATACAAGTCCTTG-ATTA---TACATATA---TA-GTatacaacgctatgagtaaaactgtttcttcagtaaaccattc
gi|4 : GGACTTATATAG-----AGAAGGGAAAGCATGTGATTAAGATGTTATAGACGCTCGCGTATTTACGCAAAATCTCG-CGAAATCTCCTTTTAAGATATC-----------------CATT-C---TCAG--A---G---ATAAA-CAAATATTTTT----------GTACATTGAAATTATCTACAAAATGAGACCAT----TCTCAGCAAATTGTGTT--------AAAATTGTTGAAATAC------ATT---ACAAAAATAT-GCGTACTGCAAC-TGAAAAATCAAGGA--AAAT-AC--TT-AA-ACATTTACAT--CAAACTTCAATATTCTAAATTTAAGATC---A-TTTCATATGTTTAAA--ACATTA-TTAAACTAT-TAAAGTTATATACAC---CTTACATTTTATGTAAAAGAAATC----A-----GTAGCCTCTGAAATTTGAA---TAATT--AATTTG-C-----C---AATTTATTAATTCTT--CGCATGCTATTTTATCAACATTT--AGTA--GA-GAT---AT----------G----TAAGTGTTCCG-CCCTTCTATATGTATATATAAGTCCTTGCATTGAACTG-ATATT---TA-ATTTataattatatataagagcggta
gi|5 : GACTTATATAG-----AGAAGGAAAAGCAACTGATTAAGATGTTATGAACGCTCGCGCATTCTCGTAAAATCTCG-GTAAATATAGTTTTCAGATATCCT---------AACTTCCATT-CATCTTAGCAA---T---ACCAATTAAA-ATCCTTTCTTT-----GTACAATGGAATTCTCTACAAAACAATATCAT----TCCCATCAAACTGTGCTT-------AAAATTGTTGAAGTACTCATG-ATT---ACAATTTT-T-TTATACTGCAACTT--AAAATCAAGG---AAAGTAC--TT-TA-AA-TTTTACTTT-AAACTGCAATAT-TTCAATTCAAGACA---A-TTTTGCGTGGTTAAA--ACA-GTACAAAAC-ATCTGAGGTTACATACAT---C-----G--TATGCGAAAGAAATC----A-----TTTGTC------------------------------------A---AA-TTATTAATTCTT--CGCATGTTATTTTATAAACATTT--AGT-------AG---AT----------GAGTTCGAGTTTCCTA-CTCTTC--------TATATAAGTCCTTG-GTT----CA-ATAAAGGTCATATATTTTTAAAAGTTaaacgc
gi|6 : GGAATTATATTG-----AGAAAGAAAGGCAACTGATTGAGATTTTGTGAACGCTCGCATATTCACGCAAAATCTCG-CAATATTTCGTTT-CAATTATCTTTAATTATCTAACTTCCATT-CATCTCAGGAA---C---ACAAAGCAAA-ATTCTTACACT-----GCAGAATGAAATTCTCATAAAAACAACACAAT----TCCAAGAAATTTGAGTTT-------AGAATTGTTGAAGTAATTTTG-ATT---ACAAAATT-T-GTATACTGAAGG-T--GAAAT-AATAAC-AAATTAT--GA-AA-AT-------GTTCAAACCTCAATATCTTTAATTCAAGATC---ATTTTTGCATGATCAAAACACATAT-TTTAAC-ATCTAAGATTACATACAA---CTTACAGTTTATGTACAAGAAATG----A-----GTTGCTTGTGTATTAAGAA---TGATT--AATTTG-C-----A---AA-TTATTAATGCTT--TGTGTGCTATTTCATCAACAGTT--AGTCTGAG-GAG---AT----------G----GAAGTTTCTTA-TCCTTC--------TATATAAGcgattataggcaaa
gi|7 : AATGATATAG-----AAAACGAAAGGCAACTGATT---------TGG---------------CGCAAAATCTCG-CAATGTCTGGTTTTTGATTATCTT---------AACTTCCATT-CATGTCGGGGAACAC---ACAAATTAAA-ACTCTTACACT-----GCAGAATGAA-TTTTCATCAAAACAATACCAT----TCCCAGAAATTTGTGTTT-------AGAATTGTTGCAATATTTTTT-AAT---ATAAAATT-T-GTTTACTGCAGC-T--AAAAT-AACGAC-AATTTAT--GA-TA-AA-TTTGCCTTTAAAA---CAATATCTTTAATTCAAGATC---A-TTTTGCATGATGGAA--ACAAGT-TTAAAC-ATCTAAGATTAAATGCAG---CTTAGAGTTTATGTACAAGAAAT----------------CTGTGAATTATGAA-------T--AATTGG-C-----A---AA-TAAT-AATCCTT--CATGTGCTATTTCATCAACATTA--AGTC--TG-GAG---AT----------G----CAAGTTTCCTA-TCCTTC--------AATTCAAGTCCTTG-ATCA---C--ATGGA---CA-ATTgtct
gi|8 : GACTTAAATAG-----AGAATGAAAAGCAGCTGATTGAGAATT--------------TATTCACGTAAAATCACG-TGAAATCTTGTTTTAAATTGTCTT---------AATTTCCATTCCATCTCAGGAA---T---ACAAATCAAA-ATTATTTCTTT-----GCATAATGAAATTCTCTACAAAACGAGACCAA----TTCCAGCATATTGTGTTT-------AAAATTGTTGATGTACTTTTG-ATT---ACAAAATT-T-ATATACTGCAGC-T--AAAAA-ATCAACAAAAGTACTTGA--A-AT-TTTAC--TTCAAACTGGAAATTCTTTAATTCAAAATCATTA-TTCTGCACGATTGAA--ACATTA-TAAAAC-ATCTAAG-TTACATACAG---CTAATATTTTATTTGTAAGAAATCAGTTA-----GTTACCTGTGAAATCTGAA---TGATT--AATTTGCC-----ACATAA-TGATTAGTTCTG--TGTGTGCTATTT-GGCAACATTT--AA-C--AGAGAG---AT----------G----ATAGTTTCCGA-TCCTTC--------TATATAAGTCCTTgaataaaccaggtatacac
gi|9 : AATTATAAAG-----AGAAGGAAAGGCAACTGACTGAGATTTTGTGAACGCTCGCGTATTCATGCAAAATCTCT-CAATAACTCATTTTCAAATATCTT---------AACTTC------ATCTCAGGAA---C---ACAAATCAAA--TTCTTACATTTAATCGCAAAATGAAATTCTCATCAAAACAATAATAT----TCTCAGCATTTTGTGTTT-------AAAATTGTTAATGTACTCTTG-ATT---ATGATATT-T-GTTTACTGCAAC-T--AAAAT-AACAAC-AAATTAC--GAGAA-AT-TTTAC--TTCAAACCTCAATATCTTTAACTCAAGATC---A-TTCTGTGTGATTGAA--ACATTT-TAAAAT-ATCTAAAATAACATACAA---CTTACA-TTTAAATACAAAAAATC----A-----GTTGCCTGTGCACTATGAA---TGATT--AATATGCC-----A---AA-TAATAAATCCCT--TGTGTGCTATTATATCAACATAT--AGTC--AC-GAG---AT----------G----CAA------TATTCCTTC--------TGTATAAGTCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAACCTTATCCCATTCCATATTTATCGCTTTAAACC