lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 1 22 33333333333 11 11 1 1 1111 1 1 1 11 22 22 1111 1111 11 11111111 222222222 1 222 1 11 11 111111 2222 1 1111111111111111111111111111111111111111 1 11 1 111 1 111 11111111 22222222 11 11 11 333333 11111 1 3333333 1 222
lowQualScore : 5 88 55 2 00 4 2 77777777777 11 66 4 6 1 44 44 8 2 1 4 6 0 1 5 66 9999 222 4 5 8 5 0 3333 5 66 777 3 5 4 4 6 5 3 1 77 4 11 3 7 0 777 3 33 0 3 44 4 33 66 2 2 0000 3 7 33 8888 33 2 88 33333333 55 777777777 2 44 222 3 22 7 2 3 3 44 88 3 2 888888 2 3333 2 3 66 555 33 0 4 1 2 66 4444444444444444444444444444444444444444 99999999999 2 2 11 44 555 1 1 3 555 3 3 000 77777 3 44 11 77 3 5 3 555 3 6 7 5 4 888 666 8888 44444444 2 22222222 0 99 1 66 888 6 11 33 1 11 6 00 5 777777 88888 0 9 0 1 2 5 3 3333333 0 0 555 4 6 3
lowQualScore : . .. .. . .. . . ........... .. .. . . . .. .. . . . . . . . . .. .... ... . . . . . .... . .. ... . . . . . . . . .. . .. . . . ... . .. . . .. . .. .. . . .... . . .. .... .. . .. ........ .. ......... . .. ... . .. . . . . .. .. . . ...... . .... . . .. ... .. . . . . .. ........................................ ........... . . .. .. ... . . . ... . . ... ..... . .. .. .. . . . ... . . . . . ... ... .... ........ . ........ . .. . .. ... . .. .. . .. . .. . ...... ..... . . . . . . . ....... . . ... . . .
lowQualScore : 0 00 55 5 00 0 8 22222222222 00 22 8 0 4 66 55 8 0 9 0 9 2 4 9 99 9999 666 4 4 3 8 6 9999 6 99 222 8 0 2 4 5 9 2 5 55 0 55 4 5 2 000 1 33 8 1 22 0 88 88 1 2 5555 9 7 99 7777 99 9 22 22222222 00 888888888 8 22 222 4 77 2 2 3 3 66 55 5 9 333333 9 1111 9 0 00 000 99 8 0 7 8 44 7777777777777777777777777777777777777777 44444444444 7 9 55 66 888 8 5 1 444 1 1 555 77777 1 22 88 66 1 9 5 444 5 8 8 0 5 111 111 5555 55555555 6 33333333 1 00 8 99 888 6 11 11 7 00 7 22 0 222222 66666 2 0 0 4 0 9 4 5555555 4 0 444 3 0 0
consensus : AAGTTTTCACNNTANNTNCNTATANAGAAAACTAGC-C-CACCC--CCCTG--GCGGCCATGTTTTTTGACGAATCACGATGGCTTGAACAAACTTGGTAGAGGNTCACCCANGGNAAATGTCNGTG--AAATTACATC---AAAATCGGGCCA-GTAGNTTCTGACAAGAAGGT----TTTTGAAGTTTTTACT--ATAGCTGCCTATATAGTAAACTAGCACCNCNCCGTGGCGGCCATG--TTT-TTT-GACGAATCACGACGGC---TTGAAC-AAACTTGGTAGAGGGT-CA--CCCAAGGAACATT-TCTGCGAAATTATNTTAAAATCGAGCCAGTAGTTTCT--GACAAGAAG--A-T--TTT-TG-AAGTTTTTAC--------T--ATAG-C---T---TATATAGTAAACTAG-CCC-CACCCCCTG--GCGGCCATG-TTTTTT-GACGAATC--ANGACGGCTTGAAC-AAACTTGGT-AG-AGGGT-C--ACCCAAGGA-ACATT-TCTGT---G--AAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTT-AAGTT----TTTAC-A----T-----NCTATA----------N--TAA-----A-----CTAGCCCCGCC-C--CCTGG---CGGCCATG-TTTTTTGAC---GA-A-TCA-AGATGGCTTGAA-----C-AAACTTGGTA--GAGGGTC-AC-CCAAGGAACATTTCTGT---GAAATTATNTCAAAATCGGNCCAGTAGTTTCTGACAAGAAG--ATTTTTT--AAGTTT----TTAC--------TATAGC---T---TATATAGTAA-ACTAGC--CCC---ACCCCCTGGCGGCCATGTTTTTTN-ACGAAT-CACGACGGCTTGAAC-AAACTTGGTA-AAAGGGTC--CN-CCAAGGA-ACATTTCTGTGAAATTATNTCAAAAT-CGGCCCAGTGG-TTT-N-GACGAGAAGATTTTTNAAGTTTTT
Reference ( gi|1 ) : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGC-C-TACCC--TCCTG--GCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC---AAAATCAGGTCA-GTAGATTCAGAAAAGAAGAT----TTTTGAAGATTTTACT--ATAGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATG--TTT-TT--AACAAATCACAACGGC---TTGAAC-AAACTTGGTTAAGGGT-CA--CCCAAGGAACATT-TCTGCAAAATTATTTTAAAATCGATCCGGTGGATTCT--GACAAGAAG--A-T--TTT-T--AAGTTTTTAC--------T--ATAG-C---T---TATATATTAAACTAA-CCC-AACCCACTG--GCCGTCATG-TTTTTT-GACGAATC--ACTACGGTTTGAAC-AAACTTGGT-GA-ACGGT-C--CTCCAAGGA-ACATT-TCTGT---G--AAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTT-AAGTT----CTT--------T-----TCTAT-----------T--TAA-----A-----CTTGCCCCGCT-C--CCTGG---CGGCAATG-TTTTTTGAC---GA-A-TCA-AGATGGCTTGAA-----C-AAACTTGGTA--GAGAGTT-AC-CCAAGGAAAATTTCTGT---GAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTT--AAGTTT----TTAC--------TATAGC---T---TATATAGTAA-GCTAAC--CCC---ACCCCCTGGCCGCCATGTTTTTTT-ACGAAT-CACTACGGTTTGAAC-AAACTTGGT--GATGGGTC--CT-CCAATGA-ACATTTCTGTGAAGTTATTTTAAAAT-AGATATAGTAG-TTT-A-GACAAGAAGATTTTTTAAGTTTTT
gi|5 : AAGTTTTCACTTTATATCCATATAAAGAAAACCAGC-C-TCCCC--TCCTG--GCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGAG--AAATTACATC---GAAATCAGGTAA-GTAGATTCTGACAAGAAGGT----TTTTGAAGTTTTTACT--ATAGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGT-TTT-TT--AACAAATCACAACGGC---TTGAGC-AAACTTGGTAAAGGGT-CA--CCCTAGGAACATT-TCTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCT--GACAAGAAG--ATT--TTT-T--AAGTTTTTACCAACACATT--ATAG-G---T---TAT
gi|8 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAGTTTTTACAATAGCTGCCTATATAGTAAACTAGC----ACCT--CACTGTGGCGGTCATGTTTTTTTAACAATCACAAtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|3 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttcaaactttgtagaggttcacccatggtaaatgtcagtgaaattacatgaaaacaggtcagtagattctgacaagaaggcttttgGAAAACTAGC-C----CCGACCCTG--GCAGCGATATTTGTTTACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGG--AATATCTGTGCCAAA--ACATTTTGAAATTCAG--CAAGTATTTTTAGAGAAGAAGATA---TTTTTAAGGTTTTACT--ATAG--ACATATAAGGAAAACTAGCCCCGCCCC-TAGCAGCCATG--TTT-TTT-AACGGATCAAAATAAT---TTGAAC-AATCTTGGT--AGACA-CAAACCCAAGGAACATC-TGTTCCGAAACATTTTGAAATTCAGCCAGTAGTTTTG--GAGAAGAAG--A-T--TTT-TG-AAGTTTTTcg
gi|6 : AAAACTAAC-CGCACCC---CCTG--GCTGCCATCTTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTCACCAAAGGAACATTTCTGTG--AAATTATTTT---AGAATCGAGCCA-GTAGTTTCTGACAAGAAGAT----TTTTTAAGTTTTTACT--ATAGCT---TATATTGTAAACTAACCCCACCCCCTAGCCGCCATGA-TTT-TT--AACGAATCAAGATGGC---TTAAACAAAACTTGGTAGAGGGT-CA--TGCAAGGAACATT-TCTGTGAAATTATATCAAAATTGACCCAGTGGTTTCT--G---AGAAG----T--TGT-T--AActtttccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : agtaatttgacatAAACTAACAC-CACTC---CCTG--GCTGCCATGTTTTTTGACGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTTCTGTG--AAATTATTTT---AAAATTGTGCCA-CTAGTTTCTGACAAGAAGAT----TTTTTAAGTTTTTACT--ATAGCT---TATATAGTAAACTAACCCCACCCCCTGGCCGCCATG--TTT-TTT-GACGAATCAAGATGGC---TTGAAC-AAACTTAGTAGAGGGT-CA--TCCAAGGAA-ATTATCTGTGAAATTATTTTAAAATTGACCCAGTAGTTTCT--AACAAGAAG--ATT--TTT-T--AAGTTTTTAC--------T--A-AG----------------TAAACTGT-CCC-CGCCCCCTG--GGGGCCATGTTTTTTT-GATAAATC--AAGATGGCTTGAAC-AAACTTGGT-AG-AGGGT-CAAC-CCAAGGA-AAATT-ACTGC---G--AAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAGTTGTTaagctaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|10 : GAACAAACCTGGTAGAGGGTCACCCAAGGAATATTTCTGTA--AAGTTATATC---AAAATTGGCCCA-GTGGTTTCAGAGGAGAAGTT----GTTAGAAGaaaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|2 : taaacttgccccgcccaacctggcggccatttCAACCTTGGTACAGGTTTACCCATGATAAATGTCAGTG--AAGTTACATT---GAAATCAGGTCA-GTAGATACTGACAAGAAGGT----TTTTGAAGTTTTTACC--ATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATG--TTT-TTTTAACAAATCGCAACGGT---TTGAAC-AAACTTGGTAAAGGGT-CA--CCCAAACA-CATT-TCTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCT--GACAAGAAG--ATT--TTT-T--AAGTTTTTAC--------T--ATAA-C---T---TATATAGTAAACTAACCCC-AACTC-CTG--GCCGCCATG-TTTTTT-GACGAATC--ACTTCGGTTGGAAC-AAACTTGGT-AG-AGGGT-C--ACCCAAGGA-ACTTT-TCTGT---G--AAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTT-AAGTT----TTTACTAAAGCT-----TATATA----------G--TAA-----A-----CTAACCCCACT-C--CCTGG---TCGCCATG-TTTTTTGAC---GA-A-TCA-CTACGGTTTGAA-----C-AAACTTGGTA--G-GATTT-CCTCCAAGGAACGTTTCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTT--AAGTTT----TAAC--------TATAttaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|8 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATG---AAAA-CAGGTCA-GTAGATTCTGACAAGAAGGC----TTTTGAAGTTTTTACA--ATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTT-TT--AAC-AATCACAACGc
gi|7 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGTG--AAATTACATC---AAAATCAGGTCA-GTAGATTCTGACAAGAAGGC----TTTTGAAGTTTTTACT--AAAGCTGCCTATATAGTTAACTAGCATCTCACTG
gi|5 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttAAATCA----A-GTGGTTTCAGA---GGAGATGCCGTTTTGAAGTTTTCACTTTATATCCATATAAAGA--AAACCAGCCTCCCCTCCTGGCGACTATGG-TTT-TT--GACAAATCGCAATGGC---TGGAAC-CAACTTGGTAGAGGTT-CA--CCCATGATAAATG-TCGGAGAAATTACATCGAAATCAGGTAAGTAGATTCT--GACAAGAAG--G-T--TTT-TG-AAGTTTTTAC--------T--ATAG-CAGCC---TATATAGTAAACTAG-CAC---CTCACTGTGGTGGTCATG-TTTTTT-AACAAATC--ACAACGGCTTGAGC-AAACTTGGT-AA-AGGGT-C--ACCCTAGGA-ACATT-TCTGC---G--AAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAGATTTTTT-AAGTT----TTT--------
gi|4 : aatactttAAACTAACACCACTCCCTGGCTGCCATG--TTT-TTT-GACGAATCA-GATGGC---TTGAAC-AAACTTGGAAGAGAGT-CA--CCCAAGGAACATT-TCTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCT--GACAAGAAG--A-T--TTTTT--AAGTTTTTAC--------T--ATAG-C---T---TATATAGTAAACTAA-CCC-CACCCCCTG--GCCGCCATG-TTTTTT-GACGAATC--AAGATGGCTTGAAC-AAACTTAGT-AG-AGGGT-C--ATCCAAGGA-A-ATTATCTGT---G--AAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTT-AAGTT-----TT--------T-----ACTAA-----------G--TAA-----A-----CTGTCCCCGCC-C--CCTGG---GGGCCATGTTTTTTTGAT---AA-A-TCA-AGATGGCTTGAA-----C-AAACTTGGTA--GAGGGTCAAC-CCAAGGAAAATTACTGC---GAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGAaccaacacattataggttattcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|3 : AAACTAGC-CCCGACCCTGGCAGCGATA--TTTGTT--TACGAATCCAAATAAT---TTGAAT-AATCCTGGTAAACACG-CA--CCCAAGGAATATC-TGTGCCAAAACATTTTGAAATTCAGCAAGT--ATTTTTAGAGAAGAAG--A-TATTTT-T--AAGGTTTTAC--------T--ATAGAC---A---TATAAGGAAAACTAG-CCC-CGCCC-CTA--GCAGCCATG-TTTTTT-AACGGATC--AAAATAATTTGAAC-AATCTTGGTAGACACAAA-C--C--CAAGGA-ACAT---CTGTTCCG--AAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTG-AAGT------TT--------T-----TCT-T-----------T--T-------------------CCGTTGC--CATGGTAACGAGAA------TTCCACATGGA-ATTCA---ATTCTTTGAA-----C--AACTCAGAAAGAAGACCT--C-CCAAGGAACATCCCTGT---AAAATTTTCTCAAAATTGGCCTAGCGGTTgggaagttgttaaaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|6 : gaGCACCCC-CTG--GCTGCCATC--TTT-TTT-GACAAATCAAGATGGC---TTGAAC-AAACTTGGTAGAGAGT-CA--CCAAAGGAACATT-TCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCT--GACAAGAAG--ATT--TTT-T--AAGTTTTTAC--------T--ATAG-C---T---TATATTGTAAACTAA-CCC-CACCCCCTA--GCCGCCATG-ATTTTT-AACGAATC--AAGATGGCTTAAACAAAACTTGGT-AG-AGGGT-C--ATGCAAGGA-ACATT-TCTGT---G--AAATTATATCAAAATTGACCCAGTGGTTTCTGAGAAGaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|10 : agtaatttgacataaaactaaccCGGCCATTTGAAC-AAACCTGGTAGAGGGT-CA--CCCAAGGAATATT-TCTGTAAAGTTATATCAAAATTGGCCCAGTGGTTTCA--GAGGAGAAG----T--TGT-TAGAAGTTttgttaaaagctaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|2 : taaacttgccccgcccaacctggC-AACCTTGGTACAGGTT-TA--CCCATGATAAATG-TCAGTGAAGTTACATTGAAATCAGGTCAGTAGATACT--GACAAGAAG--G-T--TTT-TG-AAGTTTTTAC--------C--ATAG-C---TGCCTATATAGTAAACTAG-CAC---CTCACTGTGGTGGTCATG-TTTTTTTAACAAATC--GCAACGGTTTGAAC-AAACTTGGT-AA-AGGGT-C--ACCCAAACA--CATT-TCTGC---A--AAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAGATTTTTT-AAGTT----TTTACTATAACT-----TATATA----------G--TAA-----A-----CTAACCCCAAC-T--CCTGG---CCGCCATG-TTTTTTGAC---GA-A-TCA-CTTCGGTTGGAA-----C-AAACTTGGTA--GAGGGTC-AC-CCAAGGAACTTTTCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTT--AAGTTT----TTAC--------TAAAGC---T---TATATAGTAA-ACTAAC--CCC---ACTCCCTGGTCGCCATGTTTTTTG-ACGAAT-CACTACGGTTTGAAC-AAACTTGGTAGGAT--TTC--CT-CCAAGGA-ACGTTTCTGTGAAATTATTTTAAAAT-CGAGCCAGTAG-TTT-GTGACAAGAAGATTTTTTAAGTTTTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|8 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttC-AAACTTTGTAGAGGTT-CA--CCCATGGTAAATG-TCAGTGAAATTACATGAAAACAGGTC-AGTAGATTCT--GACAAGAAG--G-C--TTT-TG-AAGTTTTTAC--------A--ATAG-C---TGCCTATATAGTAAACTAG-CAC---CTCACTGTGGCGGTCATG-TTTTTT-TAACAATC--ACAACGaactatac
gi|7 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttC-AAACTTGGT-AGAGATACA--CCCATGGTAAATG-TCAGTGAAATTACATCAAAATCAGGTCAGTAGATTCT--GACAAGAAG--G-C--TTT-TG-AAGTTTTTAC--------T--AAAG-C---TGCCTATATAGTTAACTAG---C-ATCTCACTG--
gi|5 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttTACTTTAAA-TCAA----GTGGTTTCA--GAGGAGATGCCG-T--TTT-G--AAGTTTTCAC--------TTTATAT-C---CA--TATAAAGAAAACCAG-CCT-CCCCTCCTG--GCGACTATG-GTTTTT-GACAAATC--GCAATGGCTGGAAC-CAACTTGGT-AG-A-GGT-T--CACCCATGATAAATG-TCGGA---G--AAATTACATCGAAATCAGGTAAGTAGATTCTGACAAGAAGGTTTTTG-AAGTT-----TT--------T-----ACTATAGCAGCCTATATAGTAA-----A-----CTAGCACCTCA-C--TGTGG---TGGTCATG-TTTTTTAAC---AA-A-TCA-CAACGGCTTGAG-----C-AAACTTGGTA--AAGGGTC-AC-CCTAGGAACATTTCTGC---GAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAG--ATTTTTT--AAGTTT----TTACCAACACATTATAGG---T---TAT
gi|6 : aaACATAAAACTAA-CCG-CACCCCCTG--GCTGCCATC-TTTTTT-GACAAATC--AAGATGGCTTGAAC-AAACTTGGT-AG-AGAGT-C--ACCAAAGGA-ACATT-TCTGT---G--AAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTT-AAGTT----TTTACTATAGCT-----TATAT-----------TG-TAA-----A-----CTAACCCCACC-C--CCTAG---CCGCCATG-ATTTTTAAC---GA-A-TCA-AGATGGCTTAAA-----CAAAACTTGGTA--GAGGGTC-AT-GCAAGGAACATTTCTGT---GAAATTATATCAAAATTGACCCAGTGGTTTCTGAGAAtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|4 : agtaatttgAAACTAA-CAC-CACTCCCTG--GCTGCCATG-TTTTTT-GACGAATC--AG-ATGGCTTGAAC-AAACTTGGA-AG-AGAGT-C--ACCCAAGGA-ACATT-TCTGT---G--AAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAGATTTTTT-AAGTT----TTTACTATAGCT-----TATATA----------G--TAA-----A-----CTAACCCCACC-C--CCTGG---CCGCCATG-TTTTTTGAC---GA-A-TCA-AGATGGCTTGAA-----C-AAACTTAGTA--GAGGGTC-AT-CCAAGGAAATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAG--ATTTTTT--AAGTTT----TTAC--------TA----------------AGTAA-ACTGTC--CCC---GCCCCCTGGGGGCCATGTTTTTTTGATAAAT-CAAGATGGCTTGAAC-AAACTTGGT--AGAGGGTCAAC--CCAAGGA-AAATTACTGCGAAGTTATTTCAAAAT-TTGCCCAGTGG-TTTCA-GA-GGGAAG--TTGTTAAgttgttaaaagctaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|3 : AAACTAG-CCCCGACCC--TG--GCAGCGATA-TTTGTT-TACGAATCCAAATA--ATTTGAAT-AATCCTGGT-AA-ACACG-C--ACCCAAGGA-ATAT---CTGT---GCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGT-----TT--------T-----ACTATAGACA------TA-TAAGGAAAA-----CTAGCCCCGC--C--CCTAG---CAGCCATG-TTTTTTAAC---GG-A-TCA-AAATAATTTGAA-----C-AATCTTGGTA--GACACAA-AC-CCAAGGAACAT--CTGTTCCGAAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAG--ATTTTTG--AAGTTTTTCTTTTC--------CGTTGC---C------ATGGTAACGAGAAT--TCC---AC------------ATG----------GAATTCAATTC--TTTGAAC--AACTCAGA--AAGAAGAC--CTCCCAAGGA-ACATCCCTGTAAAATTTTCTCAAAAT-TGGCCTAGCGG-TTA-A-G--GAGAAGATaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|10 : gaTTTGAAC-AAACCTGGT-AG-AGGGT-C--ACCCAAGGA-ATATT-TCTGT---A--AAGTTATATCAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTGTTAG-AAGTT----gtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|8 : taaacttgccccgcccaacctggcggccaC-AAACTTTGT-AG-AGGTT-C--ACCCATGGT-AAATG-TCAGT---G--AAATTACATGAAAA-CAGGTCAGTAGATTCTGACAAGAAGGCTTTTG-AAGTT----TTTACAA----TAGCTGCCTATA----------TAGTAA-----A-----CTAGCACCTCA-C--TGTGG---CGGTCATG-TTTTTTTAA---CA-A-TCA-aaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|7 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttC-AAACTTGGT-AG-A-GATAC--ACCCATGGT-AAATG-TCAGT---G--AAATTACATCAAAATCAGGTCAGTAGATTCTGACAAGAAGGCTTTTG-AAGTT-----TT--------T-----ACTA----------------AA-----G-----C-TGCCcaacg
gi|5 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttTACTTTAAA-TCAAG----TGGTTTCAGAGGAGATGCCGTTTTGAAGTTTTCACTT--------TATA--TCCAT-----------A--TAA-----AGAAAACCAGCCTCCCC-T--CCTGG---CGACTATG-GTTTTTGAC---AA-A-TCG-CAATGGCTGGAA-----C-CAACTTGGTA--GAGGTTC-AC-CCATGATAAATGTCGGA---GAAATTACATCGAAATCAGGTAAGTAGATTCTGACAAGAAG--GTTTTTG--AAGTTT----TTAC--------TATAGCAGCC---TATATAGTAA-ACTAGC--ACC---TCACTGTGGTGGTCATGTTTTTTA-ACAAAT-CACAACGGCTTGAGC-AAACTTGGT--AAAGGGTC--AC-CCTAGGA-ACATTTCTGCGAAATTGTTTTAAAAT-CGATCTGGTGG-TTT-CTGACAAGAAGATTTTTTAAGTTTTTtatatagttaactagcatctcactg
gi|10 : aa--TAA-----A-----CTTGCCCCGCC-CAACCTGG---CGGCCAT------------------------------TTGAA-----C-AAACCTGGTA--GAGGGTC-AC-CCAAGGAATATTTCTGT---AAAGTTATATCAAAATTGGCCCAGTGGTTTCAGAaccaacacattataggttattcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|6 : AA-----A-----CTAACCGCACC-C--CCTGG---CTGCCATC-TTTTTTGAC---AA-A-TCA-AGATGGCTTGAA-----C-AAACTTGGTA--GAGAGTC-AC-CAAAGGAACATTTCTGT---GAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTT--AAGTTT----TTAC--------TATAGC---T---TATATTGTAA-ACTAAC--CCC---ACCCCCTAGCCGCCATGATTTTTA-ACGAAT-CAAGATGGCTTAAACAAAACTTGGT--AGAGGGTC--AT-GCAAGGA-ACATTTCTGTGAAATTATATCAAAAT-TGACCCAGTGG-TTT-ggagaagttgttagaagttaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|7 : agtaatttgacataAATT-TGTTTTGAA---GATG-TAACAGATGCGTAGAATAGTTC-AAACTTGGTA--GAGATAC-AC-CCATGGTAAATGTCAGT---GAAATTACATCAAAATCAGGTCAGTAGATTCTGACAAGAAG--GCTTTTG--AAGTTT----TTAC--------TAAAGC---TGCCTATATAGTTA-ACTAGCATCTC---ACctgagaagttgttaaaagctaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaatttt-----C-AAACTTTGTA--GAGGTTC-AC-CCATGGTAAATGTCAGT---GAAATTACATGAAAACAGGTC-AGTAGATTCTGACAAGAAG--GCTTTTG--AAGTTT----TTAC--------AATAGC---TGCCTATATAGTAA-ACTAGC--ACC---TCACTGTGGCGGTCATGTTTTTTT-AACAAT-CACAACGtg
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTATTTTTTAAAAGTGT----CTA---------TACAGG---T---AAGA-AGGAA-ACTAGC--CCTGTAACCCTCTGGGGGCCTCATTTCTAT-AC
gi|10 : gtgccaaataaaatTTTGAAC-AAACCTGGT--AGAGGGTC--AC-CCAAGGA-ATATTTCTGTAAAGTTATATCAAAAT-TGGCCCAGTGG-TTTCA-GAGGAGAAGTTGTTAGAAGTTagttcataattattcatacaagctatttaatgttaagagtctgttgaggtgatcatctgtaccaaatgaaagtgagtactgaccaatagtttcaggagattctataaagattatttaagttaatcatctctacccactgggggcttcattttagcaattctggtaaa
gi|8 : taaacttgccccgcccaacctggcggccaC-AAACTTTGTA-GA--GGTT--CA-CCCATGGTAAATGTCAGTGAAATTACATGAAAAC-AGGT-CAGTAGATTC-T-GACAAGAAGGCTTTTGAAGTTTTTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|7 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttC-AAACTTGGTA-GA--GATA--CA-CCCATGGTAAATGTCAGTGAAATTACATCAAAATCAGGT-CAGTAGATTC-T-GACAAGAAGGCTTTTGAAGTTTTTacaatagctgcctatatagtaaactagcacctcactgtggcggtcatgtttttttaacaatcacaacg
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|12 ): GGCCCAGTGGTTTCAGAGGAGAAGTTGTTAGAAGCTAAAAGTTAACGACGGACAACAGACGATGGACGACAGACACCAGGCGATCACAAAAGCTCACCTGTGAGCCTTCGGCTCAGGTGAGCTAATAA
Unaligned ( gi|13 ): GAGGAGAAGTTGTTAGAAGCTAAAAGTAAACGACGGATTACAGACAACGGACGACAGATGACGGACATCAGGCAATAACAAAAGCTCACCTGTGAGCCTTCGGCTCAGGTGAGCTAATA
Unaligned ( gi|14 ): AAATTGGCCCAGTGGTTTCAGAGGAGAAGTTGTTAGAAGCTAAAAGTTAACGACGGACGACTGACACCAGGCAATCACAAAAGCTCACCTGTGAGCCTTTGGCTCAGGTGAGCTAA
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|16 ): ATATAAAAATTGACCAAGTGGTTTCAGAGAAGAAGTTGTTAGAAGCTAAAAGTTAATTACAGACGACGGACAATAGGCGATCACAAAA
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|23 ): GAGGAGAAGTTGTTAGAAGCTAAAAATTAAGAACAGATGACAGACGAC
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT
Alignments
lowQualScore : 1111 11 111 111 11 1 222 22222222 111 111 111 7777777777 111 11 11 111 222 1 444444 11 222222 4444444444444444
lowQualScore : 22 5555 1 1 1 66 0 0 0 1 6 11 7 1 1 7 1 111 7 3 1 99 0 1 1 1 1 555 2 22 1 0 2 0 1 6 6 77 1 77 111 44444444 6 6 1 444 5 8 77 2 2 2 000 777 3 5555555555 555 55 11 33 1 0 1 8 3 1 1 5 222 99 2 7 0 333 6 1 77 0 0 0 3 888888 888 88 7 6 1 3 999999 0 0000000000000000 9 3 1
lowQualScore : .. .... . . . .. . . . . . .. . . . . . ... . . . .. . . . . . ... . .. . . . . . . . .. . .. ... ........ . . . ... . . .. . . . ... ... . .......... ... .. .. .. . . . . . . . . ... .. . . . ... . . .. . . . . ...... ... .. . . . . ...... . ................ . . .
lowQualScore : 00 0000 0 0 0 00 7 7 7 0 0 33 0 0 0 5 0 777 5 3 0 22 4 0 0 4 4 444 7 99 0 7 2 3 0 3 7 99 4 99 666 22222222 7 0 0 000 0 2 55 0 5 5 222 555 2 7777777777 777 88 00 00 4 6 4 0 2 0 0 2 777 22 5 3 7 333 7 0 33 7 7 7 3 000000 333 33 3 7 0 7 222222 2 8888888888888888 8 5 0
consensus : AAGTTTTCACTATATATCCATATAAAGAAAACCAGCCT-CCCTCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGT---GAAATTACATCGAAATCAGGTCAGTAGATTCTGACAAGAAGGTTTTTGAAGTTTTTACTAT--AGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGTCATGTTTTTT-N-ACGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTTCTGCGAAATTATTTTAAAATCGATCCGGTGGTTTCTGACAAGAAG--AT-T--TTT--TAAGTTTTTAC--------TATAG-CTTATATAGTAAACTAACCCC---ACCCCCTGGCCGCCATGTTTTTTGACGAATCANNACGGTTTGAACAAACTTGGTAGACGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTNGCCCCGCCC--CCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAACCCC---ACCCCCTGGCCGCCACGTTTTTTTACGAATCANNACGGTTTAAAC-AAACTTGGT-A----AAGGGTCNTNCGAG--GAACATTTCTGTGAAATTATATNAAAAT-----CGGCCCAGTGGTTT-NGANGAG--------AAGATTNTTNAAGTTTTT
Reference ( family-104 ) : AAGTTTTCACNNTANNTNCNTATANAGAAAACTAGCCCACCCCCCTGGCGGCCATGTTTTTTGACGAATCACGATGGCTTGAACAAACTTGGTAGAGGNTCACCCANGGNAAATGTCNGT---GAAATTACATCAAAATCGGGCCAGTAGNTTCTGACAAGAAGGTTTTTGAAGTTTTTACTAT--AGCTGCCTATATAGTAAACTAGCACCNCNCCGTGGCGGCCATGTTTTTT-G-ACGAATCACGACGGCTTGAACAAACTTGGTAGAGGGTCACCCAAGGAACATTTCTGCGAAATTATNTTAAAATCGAGCCAGTAGTTTCTGACAAGAAG--AT-T--TTT--GAAGTTTTTAC--------TATAG-CTTATATAGTAAACTAGCCCC---ACCCCCTGGCGGCCATGTTTTTTGACGAATCANGACGGCTTGAACAAACTTGGTAGAGGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTAC-A----TNCTATANTAAACTAGCCCCGCCC--CCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTC-ACCCAAGGAACATTTCTGTGAAATTATNTCAAAATCGGNCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCCCCTGGCGGCCATGTTTTTTNACGAATCACGACGGCTTGAAC-AAACTTGGTAA----AAGGGTCCNCCAAG--GAACATTTCTGTGAAATTATNTCAAAAT-----CGGCCCAGTGGTTT-NGACGAG--------AAGATTTTTNAAGTTTTT
gi|1 : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGCCTACCCTCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGT---GAAATTACATCAAAATCAGGTCAGTAGATTCAGAAAAGAAGATTTTTGAAGATTTTACTAT--AGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATGTTTTT--A-ACAAATCACAACGGCTTGAACAAACTTGGTTAAGGGTCACCCAAGGAACATTTCTGCAAAATTATTTTAAAATCGATCCGGTGGATTCTGACAAGAAG--AT-T--TTT---AAGTTTTTAC--------TATAG-CTTATATATTAAACTAACCCA---ACCCACTGGCCGTCATGTTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTGAACGGTCCTCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTTAAGTTCTT--------TTCTAT-TTAAACTTGCCCCGCTC--CCTGGCGGCAATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTT-ACCCAAGGAAAATTTCTGTGAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAGCTAACCCC---ACCCCCTGGCCGCCATGTTTTTTTACGAATCACTACGGTTTGAAC-AAACTTGGT-G----ATGGGTCCTCCAAT--GAACATTTCTGTGAAGTTATTTTAAAAT-----AGATATAGTAGTTT-AGACAAG--------AAGATTTTTTAAGTTTTT
gi|10 : TAAACTTGCCCCGCCCAACCTGGCGGCCAT------------------------TTGAACAAACCTGGTAGAGGGTC-ACCCAAGGAATATTTCTGTAAAGTTATATCAAAATTGGCCCAGTGGTTTCAGAGGAGAAG--TTGTTAGAA--GTT
gi|14 : AAAT-----TGGCCCAGTGGTTTCAGAGGAG--------AAGTTGTTAGAAGCTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|2 : CAACCTTGGTACAGGTTTACCCATGATAAATGTCAGT---GAAGTTACATTGAAATCAGGTCAGTAGATACTGACAAGAAGGTTTTTGAAGTTTTTACCAT--AGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTTA-ACAAATCGCAACGGTTTGAACAAACTTGGTAAAGGGTCACCCAAACA-CATTTCTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAG--AT-T--TTT--TAAGTTTTTAC--------TATAA-CTTATATAGTAAACTAACCCC---AACTCCTGGCCGCCATGTTTTTTGACGAATCACTTCGGTTGGAACAAACTTGGTAGAGGGTCACCCAAGGAACTTT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTACTAAAGCTTATATAGTAAACTAACCCCACTC--CCTGGTCGCCATG-TTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTAGGATTTC-CTCCAAGGAACGTTTCTGTGAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTTAA--GTTTTAACTATAaaaagttaacgacggacgactgacaccaggcaatcacaaaagctcacctgtgagcctttggctcaggtgagctaa
gi|3 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttAAACTAGCCCCGACCC-TGGCAGCGATATTTGTT-T-ACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGGAATATCTGTGCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAG--ATAT--TTT--TAAGGTTTTAC--------TATAGACATATAAGGAAAACTAGCCCC---G-CCCCTAGCAGCCATGTTTTTTAACGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGGAACA---TCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTTc
gi|3 : gaAAGGTTTTACTATAGA--CATATAAGGAAAACTAGCCC-CGCCCCTAGCAGCCATGTTTTTTAACGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGG--AACATCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTT-CTTTTCCGTTGCC---ATGGT-AACGAGAATTCCA-CATGGAATTCA-ATTCTTT-GAACAACTCA---------GAA----------AGAAGACCTCCCAAGGAACATCCCTGTAAAATTTTCTCAAAATTGGCCTAGCGGT---TAAGGAGAAG--ATGTCGTTT--GAAGcttttccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : gaaaactagccccgaccctggcagcgatatttgtttacgaatccaaataatttgaataatcctggtaaacacgcacccaaggaatatctgtgccaaaacattttgaaattcagcaagtatttttagagaagaagatatttttAAACTAACACCACTCCCTGGCTGCCATGTTTTTT-G-ACGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTTCTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAG--AT-T--TTT--TAAGTTTTTAC--------TATAG-CTTATATAGTAAACTAACCCC---ACCCCCTGGCCGCCATGTTTTTTGACGAATCAAGATGGCTTGAACAAACTTAGTAGAGGGTCATCCAAGGAA-ATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTTAAGTTTTTA---------CTA-AGTAAACTGTCCCCGCCC--CCTGGGGGCCATGTTTTTTTGATAAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTCAACCCAAGGAAAATTACTGCGAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAG----TTGTTAA--caaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|5 : AAGTTTTCACTTTATATCCATATAAAGAAAACCAGCCTCCCCTCCTGGCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGA---GAAATTACATCGAAATCAGGTAAGTAGATTCTGACAAGAAGGTTTTTGAAGTTTTTACTAT--AGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTT-A-ACAAATCACAACGGCTTGAGCAAACTTGGTAAAGGGTCACCCTAGGAACATTTCTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAG--AT-T--TTT--TAAGTTTTTACCAACACATTATAG-GTTATaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|6 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAACTAACCGCACCC--CCTGGCTGCCATC-TTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCAAAGGAACATTTCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATTGTAAACTAACCCC---ACCCCCTAGCCGCCATGATTTTTAACGAATCAAGATGGCTTAAACAAAACTTGGT-A----GAGGGTCATGCAAG--GAACATTTCTGTGAAATTATATCAAAAT-----TGACCCAGTGGTTT-C--TGAG--------AAG-TTGTTAAAtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|7 : agtaatttgacataCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGT---GAAATTACATCAAAATCAGGTCAGTAGATTCTGACAAGAAGGCTTTTGAAGTTTTTACTAA--AGCTGCCTATATAGTTAACTAGCATCTCACTGagctaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGT---GAAATTACATGAAAA-CAGGTCAGTAGATTCTGACAAGAAGGCTTTTGAAGTTTTTACAAT--AGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTTT-T-AACAATCACAACG
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTAT-T--TTTTAAAAGTGTCTA---------TACAG-GTAAGA-AGGAAACTAGCCCTGTAACCCTCTGGGGGCCTCATTTCT
gi|9 : gtgccaaataaaatGTTTCTTATCAAAATTTATTTTTTAAAAGTGTCTA-TACAGGTAAGA-AGGAAACTAGCCCTGTAACCCTCTGGGGGCCTCATTTCTATACAGTTCATAATTATTCATAC-AAGCTATTTAATGTTAAGAGTCTGTTGAGGTGATCA--TCTGT---ACCAAATGAAAGTGAGTACTGACCAATAGTTT-C-AGGAGATTCTATAAAGATTATTTAAGTTatacagttcataattattcatacaagctatttaatgttaagagtctgttgaggtgatcatctgtaccaaatgaaagtgagtactgaccaatagtttcaggagattctataaagattatttaagttaatcatctctacccactgggggcttcattttagcaattctggtaaa
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|12 ): GGCCCAGTGGTTTCAGAGGAGAAGTTGTTAGAAGCTAAAAGTTAACGACGGACAACAGACGATGGACGACAGACACCAGGCGATCACAAAAGCTCACCTGTGAGCCTTCGGCTCAGGTGAGCTAATAA
Unaligned ( gi|13 ): GAGGAGAAGTTGTTAGAAGCTAAAAGTAAACGACGGATTACAGACAACGGACGACAGATGACGGACATCAGGCAATAACAAAAGCTCACCTGTGAGCCTTCGGCTCAGGTGAGCTAATA
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|16 ): ATATAAAAATTGACCAAGTGGTTTCAGAGAAGAAGTTGTTAGAAGCTAAAAGTTAATTACAGACGACGGACAATAGGCGATCACAAAA
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|23 ): GAGGAGAAGTTGTTAGAAGCTAAAAATTAAGAACAGATGACAGACGAC
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT
Alignments
lowQualScore : 1 1 111 1111 22222222 11 111 444444444 11 11 11 111 222 1 2222222 11 222222 222 22222222222 22
lowQualScore : 2 4 3 4 3 3 0 99 222 99 99 6 0 2 1 5 0 4 6 1 6 3 0 6 3 4444 44444444 6 0 11 5 0 8 333 3 6 8 5 1 0 8 444 0 0 1 555555555 0 44 22 11 33 1 0 1 8 1 1 1 77 222 99 2 7 333 0 22 0 3 8888888 4 1 1 0 88 7 6 1 444444 777 1 88888888888 1 11
lowQualScore : . . . . . . . .. ... .. .. . . . . . . . . . . . . . . .... ........ . . .. . . . ... . . . . . . . ... . . . ......... . .. .. .. .. . . . . . . . .. ... .. . . ... . .. . . ....... . . . . .. . . . ...... ... . ........... . ..
lowQualScore : 5 0 0 0 3 3 7 22 888 22 22 7 1 5 0 7 4 3 7 7 3 0 7 7 2 2222 22222222 7 8 00 0 8 0 444 2 0 0 0 0 8 0 000 8 8 4 000000000 2 77 44 00 00 4 6 4 0 0 4 0 33 777 22 5 3 333 7 00 7 3 0000000 7 0 0 7 33 3 7 0 666666 777 0 88888888888 0 00
consensus : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAG----TTTTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTNGCCCCGCCC--CCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAACCCC---ACCCCCTGGCCGCCACGTTTTTTTACGAATCANNACGGTTTAAAC-AAACT---TG--GTNAAGGGTCNTNCGAGG--AACATTTCTGTGAAATTATATNAAAAT-----TGGCCCAGTGGTTTCAGAGGAGA--------AG-TTGTTAGAAGCTTTT
Reference ( family-104 ) : AAGTTTTCACTATATATCCATATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGTCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGATCCGGTGGTTTCTGACAAGAAGAT-TTTTTAAG----TTTTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CANNACGGTTTGAACAAACTTGGTA-GACGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTNGCCCCGCCC--CCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAACCCC---ACCCCCTGGCCGCCACGTTTTTTTACGAATCANNACGGTTTAAAC-AAACT---TG--GTAAAGGGTCNTNCGAGG--AACATTTCTGTGAAATTATATNAAAAT-----CGGCCCAGTGGTTT-NGANGAGA--------AGATTNTT-NAAGTTTTT
gi|1 : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGCCTACCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCA--GAAAAGAAGAT-TTTTGAAGATTTTACTATAGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATGTTTTT-AA-CAAATCACAACGGCTTGAACAAACTTGGTTAAGGGTCACCCAAGGAACATTT-CTGCAAAATTATTTTAAAATCGATCCGGTGGATTCTGACAAGAAGAT-TTTT-AAG----TTTTTAC--------TATAG-CTTATATATTAAACTA--ACCCAACCCACTGGCCGTCATGTTTTTTGACGAAT-CACTACGGTTTGAACAAACTTGGTG-AACGGTCCTCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTTAAGTTCTT--------TTCTAT-TTAAACTTGCCCCGCTC--CCTGGCGGCAATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTT-ACCCAAGGAAAATTTCTGTGAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAGCTAACCCC---ACCCCCTGGCCGCCATGTTTTTTTACGAATCACTACGGTTTGAAC-AAACT---TG--GTGATGGGTCCTCCAATG--AACATTTCTGTGAAGTTATTTTAAAAT-----AGATATAGTAGTTT-AGACAAGA--------AGATTTTT-TAAGTTTTT
gi|10 : TAAACTTGCCCCGCCCAACCTGGCGGCCAT------------------------TTGAACAAACCTGGTAGAGGGTC-ACCCAAGGAATATTTCTGTAAAGTTATATCAAAATTGGCCCAGTGGTTTCAGAGGAGAAG--TTGTTAGAA--GTT
gi|12 : GGCCCAGTGGTTTCAGAGGAGA--------AG-TTGTTAGAAGCTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|14 : AAAT-----TGGCCCAGTGGTTTCAGAGGAGA--------AG-TTGTTAGAAGCTaaaagttaacgacggacaacagacgatggacgacagacaccaggcgatcacaaaagctcacctgtgagccttcggctcaggtgagctaataa
gi|16 : ATATAAAAAT-----TGACCAAGTGGTTTCAGAGAAGA--------AG-TTGTTAGAAGCTaaaagttaacgacggacgactgacaccaggcaatcacaaaagctcacctgtgagcctttggctcaggtgagctaa
gi|2 : CAACCTTGGTACAGGTTTACCCATGATAAATGTCAGTG--AAGTTACATT--GAAATCAGGTCAGTAG--ATACT--GACAAGAAGGT-TTTTGAAGTTTTTACCATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTTAACAAATCGCAACGGTTTGAACAAACTTGGTAAAGGGTCACCCAAACA-CATTT-CTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAGAT-TTTTTAAG----TTTTTAC--------TATAA-CTTATATAGTAAACTA--ACCCCAACTCCTGGCCGCCATGTTTTTTGACGAAT-CACTTCGGTTGGAACAAACTTGGTA-GAGGGTCACCCAAGGAACTTT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTACTAAAGCTTATATAGTAAACTAACCCCACTC--CCTGGTCGCCATG-TTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTAGGATTTC-CTCCAAGGAACGTTTCTGTGAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTTAA--GTTTTAACTATAaaaagttaattacagacgacggacaataggcgatcacaaaa
gi|3 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttGAAAACTAGCCC-CGA-CCCTGGCAGCGATATTTGTTTACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGG--AATATCTGTGCCAAA--ACATTTTGAAAT----TCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGTTTTACTATAG--ACATATAAGGAAAACTAGCCCCGCCCC-TAGCAGCCATGTTTTTTAA-CGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGGAACATCTGTTCCGAAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGAT-TTTTGAAGTTTTTCTTTTC--------CGTTG-CC---ATGGTAA-CGAGAATTCCAC------------ATG---------GAATTCAATTC--TTTGAACAA-CTCAGAAAGAAGACCTCCCAAGGAACATC-CCTGT---AAAATTTTCTCAAAATTGGCCTAGCGGT---TAAGGAGAAGATc
gi|3 : AAACTAGC-CCCGACCCTGGCAGCGATATTTGTTTA-CGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGGAATATCT-GTGCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAG----GTTTTAC--------TATAGACATATAAGGAAAACTA--GCCCCGCCCC-TAGCAGCCATGTTTTTTAACGGAT-CAAAATAATTTGAACAATCTTGGTA-GACACAAACCCAAGGAACA---TCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTTC-------TTTTgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : gaAAACTAACACCACTCCCTGGCTGCCATGTTTTTTGA-CGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTT-CTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAGAT-TTTTTAAG----TTTTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAAGATGGCTTGAACAAACTTAGTA-GAGGGTCATCCAAGGAA-ATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTTAAGTTTTTA---------CTA-AGTAAACTGTCCCCGCCC--CCTGGGGGCCATGTTTTTTTGATAAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTCAACCCAAGGAAAATTACTGCGAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAG----TTGTTAA--ccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|5 : AAGTTTTCACTTTATATCCATATAAAGAAAACCAGCCT-CCCCTCCTGGCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGAG--AAATTACATC--GAAATCAGGTAAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTAA-CAAATCACAACGGCTTGAGCAAACTTGGTAAAGGGTCACCCTAGGAACATTT-CTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAGAT-TTTTTAAG----TTTTTACCAACACATTATAG-GTTATaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|6 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAACTAACCGCACCC--CCTGGCTGCCATC-TTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCAAAGGAACATTTCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATTGTAAACTAACCCC---ACCCCCTAGCCGCCATGATTTTTAACGAATCAAGATGGCTTAAACAAAACT---TG--GTAGAGGGTCATGCAAGG--AACATTTCTGTGAAATTATATCAAAAT-----TGACCCAGTGGTTT-C--TGAGA--------AG-TTGTT-AAAtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|7 : agtaatttgacataCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACTAAAGCTGCCTATATAGTTAACTAGCATCTCACTGagctaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACAT---GAAAACAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACAATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTTTTA-ACAATCACAACG
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTATTTTTTAAAAGTGTCTA-TACAGGTAAGA-AGGAAACTAGCCCTGTAACCCTCTGGGGGCCTCATTTCTATACAGTTCATAATTATTCATAC-AAGCTATTTAATGTTAAGAGTCTGTTGAGGTGATCAT--CTGT---ACCAAATGAAAGTGAGTACTGACCAATAGTTT-C-AGGAGATTCTATAAAGATTATT-TAAGTT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|13 ): GAGGAGAAGTTGTTAGAAGCTAAAAGTAAACGACGGATTACAGACAACGGACGACAGATGACGGACATCAGGCAATAACAAAAGCTCACCTGTGAGCCTTCGGCTCAGGTGAGCTAATA
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|23 ): GAGGAGAAGTTGTTAGAAGCTAAAAATTAAGAACAGATGACAGACGAC
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT
Alignments
lowQualScore : 1 1 111 1111 22222222 11 111 444444444 11 1 1 111 11 111 11 111 111111 1 111 11 11 11
lowQualScore : 1 1 1 1 3 3 0 99 222 99 99 6 0 2 1 5 0 4 6 1 6 1 6 3 4444 44444444 6 0 11 5 0 8 333 3 6 8 1 1 0 8 444 0 0 1 555555555 0 44 55 22 0 4 0 1 1 77 111 11 2 7 777 33 2 444 0 77 444 333333 0 777 33 1 222 2 33 3 33 8 1 3 3 4
lowQualScore : . . . . . . . .. ... .. .. . . . . . . . . . . . . . .... ........ . . .. . . . ... . . . . . . . ... . . . ......... . .. .. .. . . . . . .. ... .. . . ... .. . ... . .. ... ...... . ... .. . ... . .. . .. . . . . .
lowQualScore : 0 0 0 0 3 3 7 22 888 22 22 7 1 5 0 7 4 3 7 7 3 0 7 2 2222 22222222 7 8 00 0 8 0 000 2 0 0 0 0 8 0 000 8 8 4 000000000 2 77 22 88 0 2 0 0 0 88 888 00 5 3 555 88 5 222 8 00 555 000000 0 555 88 0 888 0 88 2 88 0 0 0 2 4
consensus : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT---TG--GTAGAGGGTCNTCCGAGG--AACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
Reference ( family-104 ) : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTNGCCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAACCCC---ACCC--CCTGGCCGCCACGTTTTTTTACGAATCANNACGGTTTAAAC-AAACT---TG--GTNAAGGGTCNTNCGAGG--AACATTTCTGTG--AAATTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
gi|1 : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGCCTACCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCA--GAAAAGAAGAT-TTTTGAAGATTTTACTATAGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATGTTTTT-AA-CAAATCACAACGGCTTGAACAAACTTGGTTAAGGGTCACCCAAGGAACATTT-CTGCAAAATTATTTTAAAATCGATCCGGTGGATTCTGACAAGAAGAT-TTTT-AAGTT----TTTAC--------TATAG-CTTATATATTAAACTA--ACCCAACCCACTGGCCGTCATGTTTTTTGACGAAT-CACTACGGTTTGAACAAACTTGGTG-AACGGTCCTCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTTAAGTTCTT--------TTCTAT-TTAAACTTGCCCCGCTCCCTGGCGGCAATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTT-ACCCAAGGAAAATTTCTGTGAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAGCTAACCCC---ACCC--CCTGGCCGCCATGTTTTTTTACGAATCACTACGGTTTGAAC-AAACT---TG--GTGATGGGTCCTCCAATG--AACATTTCTGTG--AAGTTATT-TTAAAATAGATATAGTAGTTT-AGACAAGAAGATT-TTTTAAGTTTTT
gi|10 : TAAACTTGCCCC---GCCCAACCTGGCGGCCA-----------------------TTTGAAC-AAACC---TG--GTAGAGGGTCACCCAAGG--AATATTTCTGTA--AAGTTATA-TCAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGTT
gi|12 : GGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|13 : GAGGAGAAGTTG-TTAGAAGCTaaaagttaacgacggacaacagacgatggacgacagacaccaggcgatcacaaaagctcacctgtgagccttcggctcaggtgagctaataa
gi|14 : AAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagtaaacgacggattacagacaacggacgacagatgacggacatcaggcaataacaaaagctcacctgtgagccttcggctcaggtgagctaata
gi|16 : ATA-TAAAAATTGACCAAGTGGTTTCAGAGAAGAAGTTG-TTAGAAGCTaaaagttaacgacggacgactgacaccaggcaatcacaaaagctcacctgtgagcctttggctcaggtgagctaa
gi|2 : CAACCTTGGTACAGGTTTACCCATGATAAATGTCAGTG--AAGTTACATT--GAAATCAGGTCAGTAG--ATACT--GACAAGAAGGT-TTTTGAAGTTTTTACCATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTTAACAAATCGCAACGGTTTGAACAAACTTGGTAAAGGGTCACCCAAACA-CATTT-CTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAA-CTTATATAGTAAACTA--ACCCCAACTCCTGGCCGCCATGTTTTTTGACGAAT-CACTTCGGTTGGAACAAACTTGGTA-GAGGGTCACCCAAGGAACTTT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTACTAAAGCTTATATAGTAAACTAACCCCACTCCCTGGTCGCCATG-TTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTAGGATTTC-CTCCAAGGAACGTTTCTGTGAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTTAA--GTTTTAACTATAaaaagttaattacagacgacggacaataggcgatcacaaaa
gi|23 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttGAGGAGAAGTTG-TTAGAAGCTc
gi|3 : GAAAACTAGCCC-CGA-CCCTGGCAGCGATATTTGTTTACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGG--AATATCTGTGCCAAA--ACATTTTGAAAT----TCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGTTTTACTATAG--ACATATAAGGAAAACTAGCCCCGCCCC-TAGCAGCCATGTTTTTTAA-CGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGGAACATCTGTTCCGAAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGAT-TTTTGAAGTTTTTCTTTTC--------CGTTG-CC---ATGGTAA-CGAGAATTCCAC------------ATG---------GAATTCAATTC--TTTGAACAA-CTCAGAAAGAAGACCTCCCAAGGAACATC-CCTGT---AAAATTTTCTCAAAATTGGCCTAGCGGT---TAAGGAGAAGATaaaaattaagaacagatgacagacgac
gi|3 : AAACTAGC-CCCGACCCTGGCAGCGATATTTGTTTA-CGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGGAATATCT-GTGCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGT----TTTAC--------TATAGACATATAAGGAAAACTA--GCCCCGCCCC-TAGCAGCCATGTTTTTTAACGGAT-CAAAATAATTTGAACAATCTTGGTA-GACACAAACCCAAGGAACA---TCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTTC-------TTTTgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : gaAAACTAACACCACTCCCTGGCTGCCATGTTTTTTGA-CGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTT-CTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAAGATGGCTTGAACAAACTTAGTA-GAGGGTCATCCAAGGAA-ATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTTAAGTTTTTA---------CTA-AGTAAACTGTCCCCGCCCCCTGGGGGCCATGTTTTTTTGATAAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTCAACCCAAGGAAAATTACTGCGAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAG----TTGTTAA--ccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|5 : AGTGGTTTCAGAGGAGATGCCGTTTTGAAGTTTTaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|5 : aatactttaaatcaAAGTTTTCACTTTATATCCATATAAAGAAAACCAGCCT-CCCCTCCTGGCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGAG--AAATTACATC--GAAATCAGGTAAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTAA-CAAATCACAACGGCTTGAGCAAACTTGGTAAAGGGTCACCCTAGGAACATTT-CTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTACCAACACATTATAG-GTTATcactttatatccatataaagaaaaccagcctcccctcctggcgactatggtttttgacaaatcgcaatggctggaaccaacttggtagaggttcacccatgataaatgtcggagaaattacatcgaaatcaggtaagtagattctgacaagaaggtttttgaagtttttactatagcagcctatatagtaaactagcacctcactgtggtggtcatgttttttaacaaatcacaacggcttgagcaaacttggtaaagggtcaccctaggaacatttctgcgaaattgttttaaaatcgatctggtggtttctgacaagaagattttttaagtttttaccaacacattataggttattcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|6 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAACTAACCGCACCCCCTGGCTGCCATC-TTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCAAAGGAACATTTCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATTGTAAACTAACCCC---ACCC--CCTAGCCGCCATGATTTTTAACGAATCAAGATGGCTTAAACAAAACT---TG--GTAGAGGGTCATGCAAGG--AACATTTCTGTG--AAATTATA-TCAAAATTGACCCAGTGGTTTC---TGAGAAGTTG-TTAAAAGCTtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|7 : agtaatttgacataCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACTAAAGCTGCCTATATAGTTAACTAGCATCTCACTGaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACAT---GAAAACAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACAATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTTTTA-ACAATCACAACG
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTATTTTTTAAAAGTGTCTA-TACAGGTAAGA-AGGAAACTAGCCCTGTAACCC--TCTGGGGGCCTCATTTCTATACAGTTCATAATTATTCATAC-AAGCTATTTAATGTTAAGAGTCTGTTGAGGTGATCAT--CTGTACCAAATGAAAGTGAGTACTGACC-AATAGTTTC--AGGAGA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT
Alignments
lowQualScore : 1 1 111 1111 22222222 11 111 444444444 11 1 1 111 11 111 11 111 111111 1 222222 11 11
lowQualScore : 1 1 1 1 3 3 0 99 222 99 99 6 0 2 1 5 0 4 6 1 6 1 6 3 4444 44444444 6 0 11 5 0 8 333 3 6 8 1 1 0 8 444 0 0 1 555555555 0 44 22 22 0 1 0 1 1 77 111 11 2 7 777 33 1 444 0 77 444 333333 0 888888 6 222 2 33 3 33 8 1 3 4
lowQualScore : . . . . . . . .. ... .. .. . . . . . . . . . . . . . .... ........ . . .. . . . ... . . . . . . . ... . . . ......... . .. .. .. . . . . . .. ... .. . . ... .. . ... . .. ... ...... . ...... . ... . .. . .. . . . .
lowQualScore : 0 0 0 0 3 3 7 22 888 22 22 7 1 5 0 7 4 3 7 7 3 0 7 2 2222 22222222 7 8 00 0 8 0 000 2 0 0 0 0 8 0 000 8 8 4 000000000 2 77 55 88 0 2 0 0 0 88 888 00 5 3 555 88 0 222 8 00 555 000000 0 888888 5 000 0 88 2 88 0 0 2 4
consensus : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
Reference ( family-104 ) : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
gi|1 : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGCCTACCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCA--GAAAAGAAGAT-TTTTGAAGATTTTACTATAGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATGTTTTT-AA-CAAATCACAACGGCTTGAACAAACTTGGTTAAGGGTCACCCAAGGAACATTT-CTGCAAAATTATTTTAAAATCGATCCGGTGGATTCTGACAAGAAGAT-TTTT-AAGTT----TTTAC--------TATAG-CTTATATATTAAACTA--ACCCAACCCACTGGCCGTCATGTTTTTTGACGAAT-CACTACGGTTTGAACAAACTTGGTG-AACGGTCCTCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTTAAGTTCTT--------TTCTAT-TTAAACTTGCCCCGCTCCCTGGCGGCAATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTT-ACCCAAGGAAAATTTCTGTGAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAGCTAACCCC---ACCC--CCTGGCCGCCATGTTTTTTTACGAATCACTACGGTTTGAAC-AAACT------TGGTGATGGGTCCTCCAAT--GAACATTTCTGTG--AAGTTATT-TTAAAATAGATATAGTAGTTT-AGACAAGAAGATT-TTTTAAGTTTTT
gi|10 : TAAACTTGCCCC---GCCCAACCTGGCGGCCA-----------------------TTTGAAC-AAACC------TGGTAGAGGGTCACCCAAG--GAATATTTCTGTA--AAGTTATA-TCAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGTT
gi|12 : GGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|13 : GAGGAGAAGTTG-TTAGAAGCTaaaagttaacgacggacaacagacgatggacgacagacaccaggcgatcacaaaagctcacctgtgagccttcggctcaggtgagctaataa
gi|14 : AAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagtaaacgacggattacagacaacggacgacagatgacggacatcaggcaataacaaaagctcacctgtgagccttcggctcaggtgagctaata
gi|16 : ATA-TAAAAATTGACCAAGTGGTTTCAGAGAAGAAGTTG-TTAGAAGCTaaaagttaacgacggacgactgacaccaggcaatcacaaaagctcacctgtgagcctttggctcaggtgagctaa
gi|2 : CAACCTTGGTACAGGTTTACCCATGATAAATGTCAGTG--AAGTTACATT--GAAATCAGGTCAGTAG--ATACT--GACAAGAAGGT-TTTTGAAGTTTTTACCATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTTAACAAATCGCAACGGTTTGAACAAACTTGGTAAAGGGTCACCCAAACA-CATTT-CTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAA-CTTATATAGTAAACTA--ACCCCAACTCCTGGCCGCCATGTTTTTTGACGAAT-CACTTCGGTTGGAACAAACTTGGTA-GAGGGTCACCCAAGGAACTTT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTACTAAAGCTTATATAGTAAACTAACCCCACTCCCTGGTCGCCATG-TTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTAGGATTTC-CTCCAAGGAACGTTTCTGTGAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTTAA--GTTTTAACTATAaaaagttaattacagacgacggacaataggcgatcacaaaa
gi|23 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttGAGGAGAAGTTG-TTAGAAGCTc
gi|3 : GAAAACTAGCCC-CGA-CCCTGGCAGCGATATTTGTTTACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGG--AATATCTGTGCCAAA--ACATTTTGAAAT----TCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGTTTTACTATAG--ACATATAAGGAAAACTAGCCCCGCCCC-TAGCAGCCATGTTTTTTAA-CGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGGAACATCTGTTCCGAAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGAT-TTTTGAAGTTTTTCTTTTC--------CGTTG-CC---ATGGTAA-CGAGAATTCCAC------------ATG---------GAATTCAATTC--TTTGAACAA-CTCAGAAAGAAGACCTCCCAAGGAACATC-CCTGT---AAAATTTTCTCAAAATTGGCCTAGCGGT---TAAGGAGAAGATaaaaattaagaacagatgacagacgac
gi|3 : AAACTAGC-CCCGACCCTGGCAGCGATATTTGTTTA-CGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGGAATATCT-GTGCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGT----TTTAC--------TATAGACATATAAGGAAAACTA--GCCCCGCCCC-TAGCAGCCATGTTTTTTAACGGAT-CAAAATAATTTGAACAATCTTGGTA-GACACAAACCCAAGGAACA---TCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTTC-------TTTTgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : gaAAACTAACACCACTCCCTGGCTGCCATGTTTTTTGA-CGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTT-CTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAAGATGGCTTGAACAAACTTAGTA-GAGGGTCATCCAAGGAA-ATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTTAAGTTTTTA---------CTA-AGTAAACTGTCCCCGCCCCCTGGGGGCCATGTTTTTTTGATAAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTCAACCCAAGGAAAATTACTGCGAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAG----TTGTTAA--ccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|5 : AGTGGTTTCAGAGGAGATGCCGTTTTGAAGTTTTaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|5 : aatactttaaatcaAAGTTTTCACTTTATATCCATATAAAGAAAACCAGCCT-CCCCTCCTGGCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGAG--AAATTACATC--GAAATCAGGTAAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTAA-CAAATCACAACGGCTTGAGCAAACTTGGTAAAGGGTCACCCTAGGAACATTT-CTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTACCAACACATTATAG-GTTATcactttatatccatataaagaaaaccagcctcccctcctggcgactatggtttttgacaaatcgcaatggctggaaccaacttggtagaggttcacccatgataaatgtcggagaaattacatcgaaatcaggtaagtagattctgacaagaaggtttttgaagtttttactatagcagcctatatagtaaactagcacctcactgtggtggtcatgttttttaacaaatcacaacggcttgagcaaacttggtaaagggtcaccctaggaacatttctgcgaaattgttttaaaatcgatctggtggtttctgacaagaagattttttaagtttttaccaacacattataggttattcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|6 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAACTAACCGCACCCCCTGGCTGCCATC-TTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCAAAGGAACATTTCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATTGTAAACTAACCCC---ACCC--CCTAGCCGCCATGATTTTTAACGAATCAAGATGGCTTAAACAAAACT------TGGTAGAGGGTCATGCAAG--GAACATTTCTGTG--AAATTATA-TCAAAATTGACCCAGTGGTTTC---TGAGAAGTTG-TTAAAAGCTtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|7 : agtaatttgacataCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACTAAAGCTGCCTATATAGTTAACTAGCATCTCACTGaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACAT---GAAAACAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACAATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTTTTA-ACAATCACAACG
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTATTTTTTAAAAGTGTCTA-TACAGGTAAGA-AGGAAACTAGCCCTGTAACCC--TCTGGGGGCCTCATTTCTATACAGTTCATAATTATTCATAC-AAGCTATTTAATGTTA-AGAGTCTGTTGAGGTGATCA--TCTGTACCAAATGAAAGTGAGTACTGA-CCAATAGTTTC--AGGAGA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT
Alignments
lowQualScore : 1 1 111 1111 22222222 11 111 444444444 11 1 1 111 11 111 11 111 111111 1 222222 11 11
lowQualScore : 1 1 1 1 3 3 0 99 222 99 99 6 0 2 1 5 0 4 6 1 6 1 6 3 4444 44444444 6 0 11 5 0 8 333 3 6 8 1 1 0 8 444 0 0 1 555555555 0 44 22 22 0 1 0 1 1 77 111 11 2 7 777 33 1 444 0 77 444 333333 0 888888 6 222 2 33 3 33 8 1 3 4
lowQualScore : . . . . . . . .. ... .. .. . . . . . . . . . . . . . .... ........ . . .. . . . ... . . . . . . . ... . . . ......... . .. .. .. . . . . . .. ... .. . . ... .. . ... . .. ... ...... . ...... . ... . .. . .. . . . .
lowQualScore : 0 0 0 0 3 3 7 22 888 22 22 7 1 5 0 7 4 3 7 7 3 0 7 2 2222 22222222 7 8 00 0 8 0 000 2 0 0 0 0 8 0 000 8 8 4 000000000 2 77 55 88 0 2 0 0 0 88 888 00 5 3 555 88 0 222 8 00 555 000000 0 888888 5 000 0 88 2 88 0 0 2 4
consensus : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
Reference ( family-104 ) : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
gi|1 : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGCCTACCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCA--GAAAAGAAGAT-TTTTGAAGATTTTACTATAGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATGTTTTT-AA-CAAATCACAACGGCTTGAACAAACTTGGTTAAGGGTCACCCAAGGAACATTT-CTGCAAAATTATTTTAAAATCGATCCGGTGGATTCTGACAAGAAGAT-TTTT-AAGTT----TTTAC--------TATAG-CTTATATATTAAACTA--ACCCAACCCACTGGCCGTCATGTTTTTTGACGAAT-CACTACGGTTTGAACAAACTTGGTG-AACGGTCCTCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTTAAGTTCTT--------TTCTAT-TTAAACTTGCCCCGCTCCCTGGCGGCAATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTT-ACCCAAGGAAAATTTCTGTGAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAGCTAACCCC---ACCC--CCTGGCCGCCATGTTTTTTTACGAATCACTACGGTTTGAAC-AAACT------TGGTGATGGGTCCTCCAAT--GAACATTTCTGTG--AAGTTATT-TTAAAATAGATATAGTAGTTT-AGACAAGAAGATT-TTTTAAGTTTTT
gi|10 : TAAACTTGCCCC---GCCCAACCTGGCGGCCA-----------------------TTTGAAC-AAACC------TGGTAGAGGGTCACCCAAG--GAATATTTCTGTA--AAGTTATA-TCAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGTT
gi|12 : GGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|13 : GAGGAGAAGTTG-TTAGAAGCTaaaagttaacgacggacaacagacgatggacgacagacaccaggcgatcacaaaagctcacctgtgagccttcggctcaggtgagctaataa
gi|14 : AAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagtaaacgacggattacagacaacggacgacagatgacggacatcaggcaataacaaaagctcacctgtgagccttcggctcaggtgagctaata
gi|16 : ATA-TAAAAATTGACCAAGTGGTTTCAGAGAAGAAGTTG-TTAGAAGCTaaaagttaacgacggacgactgacaccaggcaatcacaaaagctcacctgtgagcctttggctcaggtgagctaa
gi|2 : CAACCTTGGTACAGGTTTACCCATGATAAATGTCAGTG--AAGTTACATT--GAAATCAGGTCAGTAG--ATACT--GACAAGAAGGT-TTTTGAAGTTTTTACCATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTTAACAAATCGCAACGGTTTGAACAAACTTGGTAAAGGGTCACCCAAACA-CATTT-CTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAA-CTTATATAGTAAACTA--ACCCCAACTCCTGGCCGCCATGTTTTTTGACGAAT-CACTTCGGTTGGAACAAACTTGGTA-GAGGGTCACCCAAGGAACTTT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTACTAAAGCTTATATAGTAAACTAACCCCACTCCCTGGTCGCCATG-TTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTAGGATTTC-CTCCAAGGAACGTTTCTGTGAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTTAA--GTTTTAACTATAaaaagttaattacagacgacggacaataggcgatcacaaaa
gi|23 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttGAGGAGAAGTTG-TTAGAAGCTc
gi|3 : GAAAACTAGCCC-CGA-CCCTGGCAGCGATATTTGTTTACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGG--AATATCTGTGCCAAA--ACATTTTGAAAT----TCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGTTTTACTATAG--ACATATAAGGAAAACTAGCCCCGCCCC-TAGCAGCCATGTTTTTTAA-CGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGGAACATCTGTTCCGAAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGAT-TTTTGAAGTTTTTCTTTTC--------CGTTG-CC---ATGGTAA-CGAGAATTCCAC------------ATG---------GAATTCAATTC--TTTGAACAA-CTCAGAAAGAAGACCTCCCAAGGAACATC-CCTGT---AAAATTTTCTCAAAATTGGCCTAGCGGT---TAAGGAGAAGATaaaaattaagaacagatgacagacgac
gi|3 : AAACTAGC-CCCGACCCTGGCAGCGATATTTGTTTA-CGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGGAATATCT-GTGCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGT----TTTAC--------TATAGACATATAAGGAAAACTA--GCCCCGCCCC-TAGCAGCCATGTTTTTTAACGGAT-CAAAATAATTTGAACAATCTTGGTA-GACACAAACCCAAGGAACA---TCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTTC-------TTTTgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : gaAAACTAACACCACTCCCTGGCTGCCATGTTTTTTGA-CGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTT-CTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAAGATGGCTTGAACAAACTTAGTA-GAGGGTCATCCAAGGAA-ATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTTAAGTTTTTA---------CTA-AGTAAACTGTCCCCGCCCCCTGGGGGCCATGTTTTTTTGATAAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTCAACCCAAGGAAAATTACTGCGAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAG----TTGTTAA--ccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|5 : AGTGGTTTCAGAGGAGATGCCGTTTTGAAGTTTTaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|5 : aatactttaaatcaAAGTTTTCACTTTATATCCATATAAAGAAAACCAGCCT-CCCCTCCTGGCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGAG--AAATTACATC--GAAATCAGGTAAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTAA-CAAATCACAACGGCTTGAGCAAACTTGGTAAAGGGTCACCCTAGGAACATTT-CTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTACCAACACATTATAG-GTTATcactttatatccatataaagaaaaccagcctcccctcctggcgactatggtttttgacaaatcgcaatggctggaaccaacttggtagaggttcacccatgataaatgtcggagaaattacatcgaaatcaggtaagtagattctgacaagaaggtttttgaagtttttactatagcagcctatatagtaaactagcacctcactgtggtggtcatgttttttaacaaatcacaacggcttgagcaaacttggtaaagggtcaccctaggaacatttctgcgaaattgttttaaaatcgatctggtggtttctgacaagaagattttttaagtttttaccaacacattataggttattcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|6 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAACTAACCGCACCCCCTGGCTGCCATC-TTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCAAAGGAACATTTCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATTGTAAACTAACCCC---ACCC--CCTAGCCGCCATGATTTTTAACGAATCAAGATGGCTTAAACAAAACT------TGGTAGAGGGTCATGCAAG--GAACATTTCTGTG--AAATTATA-TCAAAATTGACCCAGTGGTTTC---TGAGAAGTTG-TTAAAAGCTtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|7 : agtaatttgacataCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACTAAAGCTGCCTATATAGTTAACTAGCATCTCACTGaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACAT---GAAAACAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACAATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTTTTA-ACAATCACAACG
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTATTTTTTAAAAGTGTCTA-TACAGGTAAGA-AGGAAACTAGCCCTGTAACCC--TCTGGGGGCCTCATTTCTATACAGTTCATAATTATTCATAC-AAGCTATTTAATGTTA-AGAGTCTGTTGAGGTGATCA--TCTGTACCAAATGAAAGTGAGTACTGA-CCAATAGTTTC--AGGAGA
blockSeqs : G T A T . C CC TTT GT TA A G T A C G T T T A T TTTC CAACACAT A GA C T CTT G A A G A A TCC C ACTAAAGCT TA AA TC T T A C G CA TTA AA C T GTA AA G TGA TA GAA AGATGG A ATTTAA G ACC A GT T CC G C A T
blockSeqs : . . . T . . . C A . A . C T G . G . . . . C . ATT A T . A T . . T CT A GT GG . G . A C CA A . C . . . C CAT AT AGT TAATTA . . G ATG A . T . . A A .
blockSeqs : . C . . . C T . A . T T G . T . . . . . . AAA G A . C A . . C A AA CT . A . C G TC A . . . . G . . . . . . . TGT G . . . . C A .
blockSeqs : . C . . . G G . C . T C G . T . . . . . . AGA . . . G A . . . G . . . G A .
blockSeqs : . . . . . G A . C . . . T . T . . . A .
blockSeqs : G T . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons :
originalCons : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
finalCons : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT
Alignments
lowQualScore : 1 1 111 1111 22222222 11 111 444444444 11 1 1 111 11 111 11 111 111111 1 222222 11 11
lowQualScore : 1 1 1 1 3 3 0 99 222 99 99 6 0 2 1 5 0 4 6 1 6 1 6 3 4444 44444444 6 0 11 5 0 8 333 3 6 8 1 1 0 8 444 0 0 1 555555555 0 44 22 22 0 1 0 1 1 77 111 11 2 7 777 33 1 444 0 77 444 333333 0 888888 6 222 2 33 3 33 8 1 3 4
lowQualScore : . . . . . . . .. ... .. .. . . . . . . . . . . . . . .... ........ . . .. . . . ... . . . . . . . ... . . . ......... . .. .. .. . . . . . .. ... .. . . ... .. . ... . .. ... ...... . ...... . ... . .. . .. . . . .
lowQualScore : 0 0 0 0 3 3 7 22 888 22 22 7 1 5 0 7 4 3 7 7 3 0 7 2 2222 22222222 7 8 00 0 8 0 000 2 0 0 0 0 8 0 000 8 8 4 000000000 2 77 55 88 0 2 0 0 0 88 888 00 5 3 555 88 0 222 8 00 555 000000 0 888888 5 000 0 88 2 88 0 0 2 4
consensus : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
Reference ( family-104 ) : AANTTTTCACTNTATNTCCANATAAAGAAAACCAGCCT-CCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTGGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--GAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCTGCCTATATAGTAAACTAGCACCTCACCGTGGCGGCCATGTTTTTTNA-CGAATCACAACGGCTTGAACAAACTTGGTAAAGGGTCACCCAAGGAACATTT-CTGCGAAATTATTTTAAAATCGANCCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAATACGGTTTGAACAAACTTGGTA-GANGGTCACCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTA-------TTCTATAGTAAACTAACCCCGCCCCCTGGCGGCCATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCCAAGGAANATTTCTGTGAAGTTATTTTAAAATCGGNCCAGTGGTTTCTGACGAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAACTAGCCCC---ACCC--CCTGGCNGCCACGTTTTTTTACGAATCANNACGGTTTGAAC-AAACT------TGGTAGAGGGTCNTCCGAG--GAACATTTCTGTG--AAGTTATA-TNAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTTTT
gi|1 : AATTTTTCACTATATCTCCAAATAAAGAAAACCAGCCTACCC-TCCTGGCGACTATGTTTTTCGACGAATCGCAATAACTGGAACAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCA--GAAAAGAAGAT-TTTTGAAGATTTTACTATAGCTGCCTAAATAGTAAAGTAGCACCTCACTGTGGCGGTCATGTTTTT-AA-CAAATCACAACGGCTTGAACAAACTTGGTTAAGGGTCACCCAAGGAACATTT-CTGCAAAATTATTTTAAAATCGATCCGGTGGATTCTGACAAGAAGAT-TTTT-AAGTT----TTTAC--------TATAG-CTTATATATTAAACTA--ACCCAACCCACTGGCCGTCATGTTTTTTGACGAAT-CACTACGGTTTGAACAAACTTGGTG-AACGGTCCTCCAAGGAACATT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTTTGACAAGAAGATATTTTAAGTTCTT--------TTCTAT-TTAAACTTGCCCCGCTCCCTGGCGGCAATG-TTTTTTGACGAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTT-ACCCAAGGAAAATTTCTGTGAAGTTATATTAAAATTGGTCCATTGGTTTCTGACAAAAAT--ATTTTTTAA--GTTTTTACTATAGCTTATATAGTAAGCTAACCCC---ACCC--CCTGGCCGCCATGTTTTTTTACGAATCACTACGGTTTGAAC-AAACT------TGGTGATGGGTCCTCCAAT--GAACATTTCTGTG--AAGTTATT-TTAAAATAGATATAGTAGTTT-AGACAAGAAGATT-TTTTAAGTTTTT
gi|10 : TAAACTTGCCCC---GCCCAACCTGGCGGCCA-----------------------TTTGAAC-AAACC------TGGTAGAGGGTCACCCAAG--GAATATTTCTGTA--AAGTTATA-TCAAAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGTT
gi|12 : GGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagttaatgacggccgacggacacaaggtgatcacaaaagctcacctgtgagc
gi|13 : GAGGAGAAGTTG-TTAGAAGCTaaaagttaacgacggacaacagacgatggacgacagacaccaggcgatcacaaaagctcacctgtgagccttcggctcaggtgagctaataa
gi|14 : AAATTGGCCCAGTGGTTTCAGAGGAGAAGTTG-TTAGAAGCTaaaagtaaacgacggattacagacaacggacgacagatgacggacatcaggcaataacaaaagctcacctgtgagccttcggctcaggtgagctaata
gi|16 : ATA-TAAAAATTGACCAAGTGGTTTCAGAGAAGAAGTTG-TTAGAAGCTaaaagttaacgacggacgactgacaccaggcaatcacaaaagctcacctgtgagcctttggctcaggtgagctaa
gi|2 : CAACCTTGGTACAGGTTTACCCATGATAAATGTCAGTG--AAGTTACATT--GAAATCAGGTCAGTAG--ATACT--GACAAGAAGGT-TTTTGAAGTTTTTACCATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTTAACAAATCGCAACGGTTTGAACAAACTTGGTAAAGGGTCACCCAAACA-CATTT-CTGCAAAATTGTTTTAAAAT-GATTCGGTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAA-CTTATATAGTAAACTA--ACCCCAACTCCTGGCCGCCATGTTTTTTGACGAAT-CACTTCGGTTGGAACAAACTTGGTA-GAGGGTCACCCAAGGAACTTT-TCTGT---GAAATTATTTTAAAATCGAGCCAGTAGTTTCTGACAAGAAGATTTTTTAAGTTTTTACTAAAGCTTATATAGTAAACTAACCCCACTCCCTGGTCGCCATG-TTTTTTGACGAATCACTACGGTTTGAACAAACTTGGTAGGATTTC-CTCCAAGGAACGTTTCTGTGAAATTATTTTAAAATCGAGCCAGTAGTTTGTGACAAGAAG--ATTTTTTAA--GTTTTAACTATAaaaagttaattacagacgacggacaataggcgatcacaaaa
gi|23 : ctaaactgaacaagagggcatgtgtacaagtacactaaaaattccagaaaacgagatgggcaataatttttatttgtttcgaagatgtaacagatgcgtagaagagttGAGGAGAAGTTG-TTAGAAGCTc
gi|3 : GAAAACTAGCCC-CGA-CCCTGGCAGCGATATTTGTTTACGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGG--AATATCTGTGCCAAA--ACATTTTGAAAT----TCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGTTTTACTATAG--ACATATAAGGAAAACTAGCCCCGCCCC-TAGCAGCCATGTTTTTTAA-CGGATCAAAATAATTTGAACAATCTTGGTAGACACAAACCCAAGGAACATCTGTTCCGAAAC-ATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGAT-TTTTGAAGTTTTTCTTTTC--------CGTTG-CC---ATGGTAA-CGAGAATTCCAC------------ATG---------GAATTCAATTC--TTTGAACAA-CTCAGAAAGAAGACCTCCCAAGGAACATC-CCTGT---AAAATTTTCTCAAAATTGGCCTAGCGGT---TAAGGAGAAGATaaaaattaagaacagatgacagacgac
gi|3 : AAACTAGC-CCCGACCCTGGCAGCGATATTTGTTTA-CGAATCCAAATAATTTGAATAATCCTGGTAAACACGCACCCAAGGAATATCT-GTGCCAAAACATTTTGAAATTCAGCAAGTATTTTTAGAGAAGAAGATATTTTTAAGGT----TTTAC--------TATAGACATATAAGGAAAACTA--GCCCCGCCCC-TAGCAGCCATGTTTTTTAACGGAT-CAAAATAATTTGAACAATCTTGGTA-GACACAAACCCAAGGAACA---TCTGTTCCGAAA-CATTTTGAAATTCAGCCAGTAGTTTTGGAGAAGAAGATTTTTGAAGTTTTTC-------TTTTgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|4 : gaAAACTAACACCACTCCCTGGCTGCCATGTTTTTTGA-CGAATCA-GATGGCTTGAACAAACTTGGAAGAGAGTCACCCAAGGAACATTT-CTGTGAAATTATTTTAAAATTGTGCCACTAGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTAC--------TATAG-CTTATATAGTAAACTA--ACCCCACCCCCTGGCCGCCATGTTTTTTGACGAAT-CAAGATGGCTTGAACAAACTTAGTA-GAGGGTCATCCAAGGAA-ATTATCTGT---GAAATTATTTTAAAATTGACCCAGTAGTTTCTAACAAGAAGATTTTTTAAGTTTTTA---------CTA-AGTAAACTGTCCCCGCCCCCTGGGGGCCATGTTTTTTTGATAAATCAAGATGGCTTGAACAAACTTGGTAGAGGGTCAACCCAAGGAAAATTACTGCGAAGTTATTTCAAAATTTGCCCAGTGGTTTCAGA-GGGAAG----TTGTTAA--ccgttgccatggtaacgagaattccacatggaattcaattctttgaacaactcagaaagaagacctcccaaggaacatccctgtaaaattttctcaaaattggcctagcggttaaggagaagatgtcgtttgaagcaaaatgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagactggtcacaatagctcactttgagcctctggctcaggtgagcttaa
gi|5 : AGTGGTTTCAGAGGAGATGCCGTTTTGAAGTTTTaagctaaaagtaaacgtcggacgatggatgacagacaacggacaccaggcgataacaaaagctcacctgtaagccttcccctcatgtgaactaaaaa
gi|5 : aatactttaaatcaAAGTTTTCACTTTATATCCATATAAAGAAAACCAGCCT-CCCCTCCTGGCGACTATGGTTTTTGACAAATCGCAATGGCTGGAACCAACTTGGTAGAGGTTCACCCATGATAAATGTCGGAG--AAATTACATC--GAAATCAGGTAAGTAG--ATTCT--GACAAGAAGGT-TTTTGAAGTTTTTACTATAGCAGCCTATATAGTAAACTAGCACCTCACTGTGGTGGTCATGTTTTTTAA-CAAATCACAACGGCTTGAGCAAACTTGGTAAAGGGTCACCCTAGGAACATTT-CTGCGAAATTGTTTTAAAATCGATCTGGTGGTTTCTGACAAGAAGAT-TTTTTAAGTT----TTTACCAACACATTATAG-GTTATcactttatatccatataaagaaaaccagcctcccctcctggcgactatggtttttgacaaatcgcaatggctggaaccaacttggtagaggttcacccatgataaatgtcggagaaattacatcgaaatcaggtaagtagattctgacaagaaggtttttgaagtttttactatagcagcctatatagtaaactagcacctcactgtggtggtcatgttttttaacaaatcacaacggcttgagcaaacttggtaaagggtcaccctaggaacatttctgcgaaattgttttaaaatcgatctggtggtttctgacaagaagattttttaagtttttaccaacacattataggttattcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|6 : aatactttaaatcaagtggtttcagaggagatgccgttttgAAACTAACCGCACCCCCTGGCTGCCATC-TTTTTTGACAAATCAAGATGGCTTGAACAAACTTGGTAGAGAGTC-ACCAAAGGAACATTTCTGTGAAATTATTTTAGAATCGAGCCAGTAGTTTCTGACAAGAAG--ATTTTTTAA--GTTTTTACTATAGCTTATATTGTAAACTAACCCC---ACCC--CCTAGCCGCCATGATTTTTAACGAATCAAGATGGCTTAAACAAAACT------TGGTAGAGGGTCATGCAAG--GAACATTTCTGTG--AAATTATA-TCAAAATTGACCCAGTGGTTTC---TGAGAAGTTG-TTAAAAGCTtcgatgccaacaggaagaaagattccaggttcactatacatgtacaaaaacaacaaattagnnnnnnnnnncttgagcccagctcagtacaacaaca
gi|7 : agtaatttgacataCAAACTTGGTAGAGATACACCCATGGTAAATGTCAGTG--AAATTACATC--AAAATCAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACTAAAGCTGCCTATATAGTTAACTAGCATCTCACTGaaaagttaacgacggacgacagacgacggacgccaggcgatcacaaaagctcacctgtgagcctttggctcaggtgagctaaaa
gi|8 : aacaaggaggccaaggtggtcctatatcactcacctgactaacctcgagccactcgacttaagaagaccatataatacatgtacactcaaaattctagaaaaatgagatgggcgagtagtaagaattttaatttgttttgaagatgtaacagatgcgtagaatagttCAAACTTTGTAGAGGTTCACCCATGGTAAATGTCAGTG--AAATTACAT---GAAAACAGGTCAGTAG--ATTCT--GACAAGAAGGC-TTTTGAAGTTTTTACAATAGCTGCCTATATAGTAAACTAGCACCTCACTGTGGCGGTCATGTTTTTTTA-ACAATCACAACG
gi|9 : aagaggactaagatggccctatatcgctcacctgactgaccttgagtcaccaaacttaagtaggtatataatacatgtacactcaaaattcaagaaaaacgaaaatgtaacagatgcgtagaagagttGTTTCTTATCAAAATTTATTTTTTAAAAGTGTCTA-TACAGGTAAGA-AGGAAACTAGCCCTGTAACCC--TCTGGGGGCCTCATTTCTATACAGTTCATAATTATTCATAC-AAGCTATTTAATGTTA-AGAGTCTGTTGAGGTGATCA--TCTGTACCAAATGAAAGTGAGTACTGA-CCAATAGTTTC--AGGAGA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAACAAGAGGGCCAAAATGGCCCTATATCGCTCACCTGAGTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACATGTACACTCAAAATTCCAGAAAAACGAGATGGGCGAGTAGTTAGAATTTTTATTTGTTTTGAAGATGTAACAGATGCGTAGAAGAGT
Unaligned ( gi|15 ): GCTTCCAAGTGGTTTAAGGGAAGGACTCGTTCAAAGCAAAAGTGGACGGAGGGACGACGAAGAGAGACAACTTACACCAGGTGATCACAAATCTCATTTGT
Unaligned ( gi|17 ): TTTAGACAAGTTGTTTGAAGCAAAAGTTAAGAACAGACACAGGGAAATCCCAAAAACTCAGCTGTGAATCTTCAGCTTAGGTAAGCT
Unaligned ( gi|18 ): TACAAGAGGGCGAAAATGACCCTATATCGCTCACCTGACTGACCTTGAGTCACCCAACTTAAGTAGATTATATAATACAT
Unaligned ( gi|19 ): AACAACGGGCAGAAGAGTGACGACAGCCACTGAGTGATCAGAAAAGCTCACTTGTAAGGCTTCAGCTGAGGTGAGC
Unaligned ( gi|20 ): TCTGGACAGACAAACAATGGACGTCAGACAATGATCAAAATAGTTCACCTTGAACTTTGCTCAGGTCAGCTTAC
Unaligned ( gi|21 ): CAGATGATGGACACAATGTCAATTACAAATGCTAACCTTGTCTTGTCTCCGGTAAGCTAATAA
Unaligned ( gi|22 ): CGCGATAACAATATTATCCTTATGCGGATATCTGGATATCAGATATCGAAAG
Unaligned ( gi|24 ): GACCACAAAACCTCACCTTTGAGCCCTTGGCTCAGGCAAGCTAAAAA
Unaligned ( gi|25 ): ATGATGGATGACAGATACAGAGCGATCAGAAAAGCTCACCT