lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4444 1 1 444 111 9999999999999999999 1111 222 2222 1 44444444444 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 1 11111 444444444444444444 222 1111 111111111111 1 1111 1111 3333333333333333333 111 111111 3333333333333 1111 11 555555555555555555555555555555555555555555555 111 555555555 222 1111111111 111111 111 1111 22222222 7777777777777777777777 22 333333333 222222 44444444444 11 2222 111 33333 1111 11 111 33333333333 11 11 11 11 3333333333333333 1 1 222222222222222222222222222222222222222222222222222222222222 1 2222 222222222222222 1
lowQualScore : 5 4444 5 5 666 555 3333333333333333333 55 0000 1 555 1111 0 4 33333333333 2 2 6 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 7777 6 66666 6 888888888888888888 3 99 666 4 4444 2 999999999999 5 1 5 5 0000 3 1 1 2222 66 888 9999999999999999999 000 111111 8888888888888 3 4444 6 3 22 2 999999999999999999999999999999999999999999999 7 77 3 111 555555555 2 111 8888888888 2 44 444444 5 111 6 2222 5 66666666 2222222222222222222222 44 7 000000000 1 7 111111 8 77777777777 55 3 33 8 0000 444 22222 7777 33 999 44444444444 00 77 9 66 8 6 2 99 88 6 2 00 1 4 1111111111111111 3 1 3 6 999999999999999999999999999999999999999999999999999999999999 0 6 7777 777777777777777 0
lowQualScore : . .... . . ... ... ................... .. .... . ... .... . . ........... . . . .................................................................................................................................................................................. . .... . ..... . .................. . .. ... . .... . ............ . . . . .... . . . .... .. ... ................... ... ...... ............. . .... . . .. . ............................................. . .. . ... ......... . ... .......... . .. ...... . ... . .... . ........ ...................... .. . ......... . . ...... . ........... .. . .. . .... ... ..... .... .. ... ........... .. .. . .. . . . .. .. . . .. . . ................ . . . . ............................................................ . . .... ............... .
lowQualScore : 0 0000 0 0 000 888 0000000000000000000 22 8888 2 555 2222 0 5 22222222222 5 0 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0000 2 77777 7 555555555555555555 5 22 888 8 2222 1 000000000000 7 4 7 1 1111 9 7 9 1111 99 888 2222222222222222222 222 888888 8888888888888 5 2222 7 7 77 5 111111111111111111111111111111111111111111111 5 99 6 444 777777777 5 333 8888888888 5 55 444444 3 777 7 2222 3 22222222 0000000000000000000000 00 0 000000000 0 3 666666 0 55555555555 00 2 88 8 0000 000 66666 0000 88 888 00000000000 22 55 5 55 8 0 5 55 55 0 0 00 2 2 5555555555555555 2 0 5 0 222222222222222222222222222222222222222222222222222222222222 5 0 8888 222222222222222 0
consensus : TGCGAATTTCCTGTTTTCCCAT--AGTATTCCTAT--GTA---AAAATCCAAAGTCC-CCTTACTGGGNC-CCAATGAANCNTAGCCC----C-TTCATTTG---A--AANA-CTTGAAACCTC-ACTC---GGGATCAT--TGTA--TACCAAATATGAACA-AT-TGGCTGGTCGG-TTCTTGA---GA-----AT----TTTT----TTT--GA-AA-T-T-C-CA-ATT---T---TACCC-TTTTTT-GGCCCCTGCTNGNCCC-TTAN-----GT-ATTAAAT-ACCCTTT--AA-N-NACCCAGTATC----AACTGTTATGACTA-----AACA-ATGCTC---------------CAGACAT--CAAGATGAT-TAAA----ATAATNCCTAA--AATAG--ATGAGAA-AA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCT--ATGTA---AAAA-------------TCAAAGTCC-C-CTTACTGGG-CTCCAA-CGA----ANTA-TAGCCC----C-TTNATTT-GAACAAAA----CTANAAACCCCTACTCATA-GGATC---AT--T-T-----ATACCAAATA--TGAACAAATTTGGCT-NT---CGGTTCTTGAGAAGAA-ATTTTTGA-A-----ANTTCACAATTTTAT-----CCCTTTT---TGGG-CC-CCTGCT-GGCCC--CTTATGGACCTCAAGGGTCGTGNC--T-TAC-AACGAAC-TGAGAGCAA-TGATTAGGTGATACTANATGCAAAATA-TCAGAGC-CCAGGCCTTGCACTTTCGGAGAA---GATTTT---TGAAATTTTGAAGA----AAAA--AAA-ACTGATAAANCCCC--GAGG-CGGGNCCAAATTTGACCC-NAGTGTCATGATTTGAACAAACTTNAGAGAGCTTTGTGTAAGAACGCTTCATANCGA---ATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT---TA-G----A--GACG-------T-A-C--AC-ACGG-C------C-----------GATCGCAATAGCTCATCC-TGAGC-T-T--T-G-CTCAAGGTGAGC-TAAA
Reference ( gi|2 ) : TGAGAATTATACGTGTTCGCATGTAGTATTCCTAC--GTA---AAAATTTAAAATTC-CCTTACTAGGCC-CCAATGAACAATAGCTC----C-TTTATTTG---A--AAT--TTTGAAACCCCAACTCCTGGGGACC-T--------TACCTAATATGAACAAG---GGCTGATTTG-TTCTTGA---GA-----AT----TTTT----TTTAAGA-AA-T-T-CTCA-ATT---T---TATTC-TTTCTTAGGCTCCTA-TGGACCC-TTGCG---TGT-ATTATAT-ACCCATT--AA-T-CACCCAGTCTC----AACTGTAATGACTA-----AACA-ATGTCC---------------CAGACAT--CAAGATGTT-TGAA----ATAATACCTAA--AATAA--ATGAGAA-AA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCT--ATGTA---AAAA-------------TTAAAGTCC-C-CTTACTAGG-CCCCAA-CAA----ACTG-TAACCC----C-TTCATTC-GAACAAAA----CGAGATACTCCTGCTCATAGGGATC---AT--T-T-----ATGCCAAATA--TGAATGAATTTGACACCT---CAGTTCTTGAGAAGAATATTTTTGA-A-----AATTCACAATTTCAT-----CCCTTTT---TGGG-CC-CTTGTT-CGTTC--CTTATGGACCTC--GGGTTATGGC--T-TG--AACAAATCTGAGAGAAACTGATTAGTTAATACTACATACAAAATA-TCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATTTC---TGAAATTTTGAAGA----AAAA--AAA-ACTGATGAGATCCT--AAGG-CGGGTTCAAATTTTACCC-CAGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAA---ATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGT---TA-G----A--GACG-------T-A-C--AC-ATGG--------C-----------AATCACATTAACTCAACT-TGAGC-T-T--T-G-CTCAAGGTGAGC-TAAA
gi|1 : TGCGAATTTCCTGTTTTCCCAT--AGCATTCCTAT--GTA---ACA-TTCAAAGTCA-CCTTACTGTGAC-CCAATGGAGCATAGCCC----C-TTCATTTGAACA--AAC--TAT-AAACCCT-ACTCATAGGGATCATTTTGTAAATACCAAATATGAACACATTTGGCTGGGCAG-TTCTTGA---GAAGACGAT----TTTT---------GA-AATT-T-CACA-ATTACATGTATATCC-TTTTTT-GGCCTCTG-TTGACCC-CT--------T-ATTAAATAACCTGTA--AA-T-GACCCAGTATC----AAATCTCATAGCTA-----AACATTTCTCCAGACCTCAAGATAATCAGACCT--CAAGATGAT-TAAA----ACAATTCTTGA--AATA-----GAGGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTT--ATGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGG-CTCAAATCAA------TGCTAGCCC----T-TTGATTT-GAAAAAAAACCTTAAAAAACCCAAACTCATA---ACCAAAAT--T-T-----ATAATCAATA--TAAACAAACTTGGCTTGT---TGCTTCTTGAGAAGAA-ATTTCTGATACCAGTAATTCACAATTGTAT-----CCAATTT---TGGGTCC-CTTTCT-GACCC--TTTATGAA
gi|3 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaTTCCCAT--AGTATTTCTAT--ATA---GAAA------------CTTACTAGGTT-GCAGTGAAATCTAGCTC----CATTCAAATG---AACAAA--CTAGAAACCTCAAC-----GGAATCATAATATA--TACCAAATATAAACAAATGTGGCTGTTCGG-TTCTTGAGACGA-----AT----ATTT----TT----A-AA-T-T--TCACATT---T---Ttatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|4 : acttggctcaataaactctagccctatcatttgaaacgtctactcatagttatcatttatacaaaatatatttgcatttggctcttcatgtctagagaagatgagttttaaaataatttctcaatgttaccctttaactcctactgaccccttattaatattaaatcccttttaaagtaatcaatatcaactattatgactatgtctaacaatgctacataaatcaatatgaaatgaattatacaacaccattgatgaaaaaaaccataataaccattTTCCCATTT--TATTCATACATGTACATAAAATC--AAATCCATCTTACCTAGCC-TCAATGTATTCTAGTCCATGAC-TTTTTTTA---A--AAAAACTTGAAACCTCTACTC------A------------TACCAAATTT----------GTCTGGCTGG-TTCTTGA---GA-----ACAAGATTTT----T----GA-AA-TAT-CAGA-ATT---T---TAttaaatgaactgatatgttcaacttacaagtctcaagggtggtgccagttataacgaaagggaaatggcttgaacacatctgagataatcagattggacggtaattcatgtaaaatagaagaaaaaaacctgatatacccctgggggcggagtcaaatttaatttaaatgtcacgatttaaactcgagagtgctttgtgtatcaacgtttcatactaagttatgtgaaaatttgtcaaactgtttcagagtagtagttatttgaagcaaaagtatacgacggacgatggacttacggacgacggacaaaaaacgatcgcaaaagctcatctgtgagccgttgacttaggtgagcataac
gi|15 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatTCCTAT--GTA---AA----TA----TC-CCCTACTGGGACACCAATAAGCCATAGCTC----C-TTGATTTG---G--AACA-TTTGGAACCTCatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|4 : ATTTGGCTCATAA---GA------T----TTTTGATATTTAA------------CA-GTT---T---TACCC-TTTTTT-GGCTTCTGCTGTCCCC-TTAC------T--CTAAAT-CCTCTTT--AAAG-GACTAAGTCTC----AACTGTTATGTCTA-----AATA-ATGCTT---------------CAGACAT--TAATAAGAT-TAGA----ATTATACCAAA--CACAG--ACGAGAA-AA-AC-ATAATTTCCCATTT--------T----ATTCATACATGTACATAAAA-------------TCAAA-TCCAT-CTTACCTAG-CCTCAA-TGT----ATTC-TAGTCCATGAC-TTTTTTT-AAA-AAAA----CTTGAAACCTCTACTCATA------------------------CCAAATT--TG------TCTGGC-------TGGTTCTTGAGAACAAGATTTTTGA-A-----ATATCAGAATTTTA
gi|7 : ccaaacagatgaatgaT----TTTT----TTTTTGA-AA-T-T-C-AA-ACT---A---TAATCATTTTTTGGGCCCCTGCTGGCCTT-TTAAGGACTGTCATTACTT-ACC------AA-TACACCTGGCATC----AAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|3 : aataatggctcatcagattttttT----TTTAAAATAA-T-TTCTCA-ATG---T---TACCC-TTT----AACTCCTA-CTGACCCCTTATT---AAT-ATTAAAT--CCCTTTTAAA-G-TAATCAATATC----AACTATTATGACTATGTCTAACA-ATGCTA---------------CATAAAT--CAATATGAAATGAATTATACAACACC------ATTG--ATGAAAA-AA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCT--ATATA---GAAA-------------------------CTTACTAGG-TTGCAG-TGA----AATC-TAGCTC----CATTCAAAT-GAACAAA-----CTAGAAAC-----CTCAACGGAATC---ATAATAT-----ATACCAAATA--TAAACAAATGTGGCTGTT---CGGTTCTTGAGACGAATATT--------------TTTA-AATTTCAC-----ATTTTTTAAATGAA-C----TGATATGTTCAACTTACAAGTCTCAAGGGTGGTGCCAGT-TAT-AACGAA----AGGGAAA-TGGCT---TGA-AC-ACATCTGAGATAATCAGA----------TTGGAC-----GGTAA------TTCATGTAAAATA--GAAGA----AAAA--AAC--CTGAT-ATACCCCTGGGGG-CGGAGTCAAATTTAATTT-AAATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGA---AAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTA--TACG----ACGGACGATGGACTT-A-CGGACGACGGACAAAAAAC-----------GATCGCAAAAGCTCATCTGTGAGC-CGT--T-GACTT-AGGTGAGCATAAgatgaaataatactcaaaatagatgacaaaaacaaaatgtcctgtttttccttaatgtttttatttaaaaatctaagt
gi|1 : acttggctcaataaactctagccctatcatttgaaacgtctactcatagttatcatttatacaaaatatatttgcatttggctcttcatgtctagagaagatgagCAGTCTCTCATAACTGCTATAAGTA-----AACA-ATGGTC---------------CAGATCT--CAAGGTAAT-TAAA----GTAATTCCT------TAATGATGAGAT-GATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCT--ATGTA---ACAT-------------TCAAAGTCA-C-CTTACTGTG-ACCCAA-TGG----AGCA-TAGCCC----C-TTCATTT-GAAC-AAA----CTATAAAC-CCTACTCATAGGGATC---AT--T-TTGTAAATACCAAATA--TGAACACATTTGG---CTGGGCAGTTCTTGAGAAGACGATTTTTGA-A-----ATTTCACAATTACATGTATATCCTTTT---TTGG-CC-TCTGTT-GACCC--CTTATc
gi|7 : taagtactggtacacaggcatgtataacaatcataacataaaggattACTGTCATTACTT-----ACCA-ATACAC---------------CTGGCAT--CAAGATG-----AA----ATAATACTCAA--AATAG--ATGACAA-AA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTT--ATTTA---AAAA-------------TCTAAGTtaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : aataatggctcatcagattttttttttttttttgaaattcaaactataatcattttttgggcccctgctggccttttaaggATGAATG-----AACA-ATGTTT---------------C--ACATTCCAAGATGAT-TAAA----ATCATTCCTAA--AA
gi|14 : tgaaactaaaaatcacaatgttatcctttttgtatctcctgctagctttttatggacatgcatgcttctttaaagggtcatatctaagatgacTACCTAACTAATTG--ATGACAA-AA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCT--ATGTA---AAAA-------------TCACAGataggt
gi|9 : at--ATGAGAA-AACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCT--A-------AAAA-------------CCAATGTTC-CTCTT--------TCCAA-CGATTGAATTA-TAAACT----C-ATTATTT-GAACAAAC----TAATA-ACCGTTGTGCACATGGATC---AT--G-GA----ACACCAAACA--TGGACACATTT
gi|15 : attgTCCT--ATGTA---AA----------------TA---TCC-C-C-TACTGGGACACCAA-TAA----GCCA-TAGCTC----C-TTGATTTGGAACA
gi|8 : CCCTTACTCAT--GGATC---AT--T-T-----ATACCAAATA--TGCACAAATCTGAGTCAT---CAGTTATTAAAAAG---ATTTTTG--A-----AACTCACAATTGAAT-----TCCTCTtttggaacctc
gi|4 : actacttaaatCCAAACAGATGAATGAATTTGG---CT---CA-----TAAG------ATTTTTGA-T-----ATTTAACAGTTTTA------CCCTTTT---TTGG-CT-TCTGCT--GTCC--CCTaaagttattgaatgccctttaaagaacctattttcaactgcttttgactaaac
gi|7 : TTTTTGA-A-----A-TTCAAACTATAAT-----CATTTTT---TGGG-CC-CCTGCT-GGCCT--TTTAAGGACT------GTCATTAC--T-TACCAATACACCTGGCATCAA--GATGAAATAATACT-----CAAAATA-tactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|10 : aataatggctcatcagatttttttttttA-A-----AAATCACAATGTTAT-----CC-TTTT---TGTA-TCTCCTGCT-AGCTT--TTTATGGACgatgacaaaaacaaaatgtcctgtttttccttaatgtttttatttaaaaatctaagt
gi|4 : tgaaactATGGC--CATG--AACAAACATGAGAGCAACTGATTAGGTGATACTAAATGCAAAATA-TCA-------AGGCCTTGCACTTTTGGAGAA---GATTTT---TGATACTTTGAAAA----AAatgcatgcttctttaaagggtcatatctaagatgacatgaatgaacaatgtttcacattccaagatgattaaaatcattcctaaaaataggt
gi|6 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataATATGCAAAATA-TTAAAGCGCCAGG-CTT----TTTGAAA-AA---GATTTT---TGGAATTTT--AGA----AAAATGAAA-A-TGATAAGCCCCT--GAGGACGAGC-CAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACAT---ATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGT---TA-A----C--AACG-------T-A-C--
gi|5 : CAAAATA-TCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATTTT---TGAAATTT--AAAA----AAAA--ATATACTGATAAACCCCT--GATG-TGGGTCCAAATTTGACCC-CAGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACA-CGA---ATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGT---TA-ATTACG--GACGGA-----TGA-C--AG-ATGA--------CGGACTAAGGTAGATCACAATAGCTCATCC-TGAGC-T-T--T-G-CTC-AGATGAGC-TAggacgaacaactaatacagggtaattcacaaaagct
gi|1 : caggATTCC---TGAAAT-----AGATGTGAAAA--AAA-ATTTCCGGAATG----GAGT-GGGGGCCAAAGTTTATCT-AAGTGTCATGACTTGA-TAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC-----ATTTGTTGAAAAT-----AAGCGATTTCA---AAGAAGGCATC--AAGTAAAAGTTTATG-G----ACTGACG-------A-ATC--AC-ACAGTT------C-----------AATC
gi|16 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaA---ATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGT---TA-GA---A--GAC
gi|18 : TGGTTTAAGACAAGAAGTCATCTGAACCAATAGT---TA-A----C--GACG-------G-A-C--aga
gi|17 : -C--AC-AGGA--------C-----------GATCAAAATAGCTCATCA-TGAGC-T-AAAT-G-CTCA-GGTGAGC-TAAAggacag
gi|17 : TTAGCTCA-CC-TGAGCAT-T--TAG-CTCATGATGAGC-TAaac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AAGAAAAGTCGTCTGAAGCAAATGTTATCAACAGACGGACGGAAAATGAACACAGAGCGGTCCAAAAAGTTAACTTGCGAGCGTTCGGTTCAAGTACGCCAGAAAGAGTAATGGCGCTAAGCAGAG
Unaligned ( gi|12 ): GGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGTTTGCAGACATGATGGACGGACAACAGACGGCAGACACAGGGCAATTAGAATA
Unaligned ( gi|13 ): TTCAGAGAAGAAGTCGTTTGTAGCAATTGTTATCTGACGGACCCACGGACGGAACGTGATCACAATAGCTCAGATGAGCTA
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 66666666666666666666 11111111111111111 555555555555555555555 111 3333 4444444444 1111111 33333333 1111111 1111111 33333333333333333333333 11 11 111 1111 11111 3333333333333333 1111 11111111111111111 111 1111 1111 11 1111 444444444444444444 22222 222 1111111 22222222 111 11 11 1 333333 333 2 111 33333 111 11 11 11 1 11 1 111 111 222222 88888888888888888888888888888888888888888888888 1111 11 1 2 1
lowQualScore : 2 3 88 1111 00000000000000000000 0 1 8 1 555 3 8 99999999999999999 0 8 333333333333333333333 1 3 444 4444 0 66 2 1111111111 77 6666666 44444444 7777777 7 5 2 4444444 1 44 77777777777777777777777 6 11 55 000 2 2 7 5555 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 1 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 5 4444 6 1 88 77 77 1 2222 222222222222222222 66 2 5 99999 0 666 4444444 22 55555555 3 1 444 5 8 1 1 99 11 0 88 0 1 111111 0 333 6 6 222 7 7 1 8 88888 66666 444 11 3 11 0 33 0 2 1 66 0 8 3 99 0 5 1 4 2 111 1 0 1 111 999999 66666666666666666666666666666666666666666666666 2 5555 99 0 7 0
lowQualScore : . . .. .... .................... . . . . ... . . ................. . . ..................... . . ... .... . .. . .......... .. ....... ........ ....... . . . ....... . .. ....................... . .. .. ... . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . . .. .. .. . .... .................. .. . . ..... . ... ....... .. ........ . . ... . . . . .. .. . .. . . ...... . ... . . ... . . . . ..... ..... ... .. . .. . .. . . . .. . . . .. . . . . . ... . . . ... ...... ............................................... . .... .. . . .
lowQualScore : 5 7 33 2222 22222222222222222222 2 0 0 4 222 2 0 88888888888888888 3 0 888888888888888888888 0 2 000 2222 8 44 2 0000000000 99 2222222 44444444 8888888 4 0 0 2222222 1 88 55555555555555555555555 9 99 00 999 7 9 2 6666 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 5 2222 7 0 00 99 99 0 1111 666666666666666666 99 0 7 66666 4 444 7777777 77 11111111 2 0 000 0 0 4 4 44 00 7 55 5 0 000000 7 333 7 7 333 3 3 0 0 00000 66666 000 00 8 00 8 88 0 5 0 00 0 8 2 00 6 6 0 6 2 666 0 7 4 000 666666 88888888888888888888888888888888888888888888888 8 4444 00 0 8 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAAT-----TCAAA-------GTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTTAAA-A---CCTCA-CTC-T-G-GGATCA---TT-T--ATACCAAATATGA---ACA-AA-TTGGCTCGTCGGTTCTTGAGA--ACGN-T--TTTT--GA-------AAT----TCN-CAATT---T---TATCC-TTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATACC--CTTT--AAGG-ACCCAGTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GGATC---ATTT-----ATACCAAATA--TGAACGAATTTG-GC-T-NTCGGTTCTTGAGAAGA-A-ATTTTTGA-A-----ATTTCACAATT---T---TATCCCTTTT---TGGG-CCCCTGCTG-GCCC--CTTATGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-TGATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT---TA-G-A--GACG-------NA-C-----GC-----ACGG-A----------C-------GATCACAATAGCTCATCN-TGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGCGAATTTCCTGTTTTCCCAT--AGTATT----CCTATGTAAAAAT-----CCAAA-------GTCCCCTTACTGGGNC-CCAATGAANCNTAGCCCCTTCATTTGAA-ANA----CTTGAA-A---CCTCA-CTC---G-GGATCA---TTGT--ATACCAAATATGA---ACA-A--TTGGCTGGTCGGTTCTTGAGA--ATTT-T--TTTT--GA-------AAT----TC--CAATT---T---TACCC-TTTTT-T-GG--CCCCTGCTNGNCCCTTAN--G-T--AT-TAAATACC--CTTT--AANN-ACCCAGTATC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCTCCAACGA----ANTATAGCCC----C-TTNATTTGAACAAAA--CT--ANAAACCCCTAC----TCATA-GGATC---ATTT-----ATACCAAATA--TGAACAAATTTG-GC-T-NTCGGTTCTTGAGAAGA-A-ATTTTTGA-A-----ANTTCACAATT---T---TATCCCTTTT---TGGG-CCCCTGCTG-GCCC--CTTATGGACCTCAAGGGTCGTGNC--TTACAACGAA-C-TGAGAGCAA-TGATTAGGTGATACTANATGCAAAAT-ATCAGAGC-CCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAANCCCC-GAGG-CGGGNCCAAATTTGACCCN-AGTGTCATGATTTGAACAAACTTNAGAGAGCTTTGTGTAAGAACGCTTCATANCGAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT---TA-G-A--GACG-------TA-C-----AC-----ACGG-C----------C-------GATCGCAATAGCTCATCC-TGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|1 : --AAGG-ATTCAGTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCTA--TGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGGATC---ATTTTGTAAATACCAAATA--TGAACACATTTG-GC-TGGGCAGTTCTTGAGAAGACG-ATTTTTGA-A-----ATTTCACAATTACATGTATATCCTTTTT---T-GG-CCTCTGTTG-ACCC--CTTAT
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-T-----TCAAA-------GTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA----CTATAA-A---CCCTA-CTCATAG-GGATCATT-TTGTAAATACCAAATATGA---ACACAT-TTGGCTGGGCAGTTCTTGAGAAGACGA-T--TTTT--GA-------AAT----TTCACAATTACATGTATATCC-TTTTT-T-GG--CCTCTGTTGACCCCT-------T--AT-TAAATAAC--CTGTA-AATG-ACCCAGTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTTA--TGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA---ACCAAAATTT-----ATAATCAATA--TAAACAAACTTG-GCTT-GTTGCTTCTTGAGAAGA-A-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTCCCTTTCTG-ACCC--TTTATGAAtaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTGAA-AAAAAACCTTAAA-AAACCCAAA-CTC---A-TAACCAAAATT-T--ATAATCAATATAA---ACA-AACTTGGCTTGTTGCTTCTTGAGA--AGAAAT--TTCT--GATACCAGTAAT----TCA-CAATT---G---TATCC-AATTT-T-GGGTCCCTTTCTGACCCTTTAT--G-A--AT----ATATCTGCTTT--AAAGGACCCAGTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGTTTATG-G-ACTGACG-------AATC-----AC-----ACAGTT----------C-------AATCggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgA-------AAT----CA--CAATG---T---TATCC-TTTTTGT-AT--CTCCTGCTAGCTTTTTAT--G-G--ACATGCATGCTT-CTTT--AAAG-GGTCA-TATCTA--AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGT
gi|11 : tgaaactaaAGAA-AAGTCGTCTGAAGCAAATGT---TA-
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGT---TT-GCA--GACA-------Ttcaacagacggacggaaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTGT---TA-T-CT-GACG-------GA-C-----CC-----ACGG-A----------CGGAACGTGATCACAATAGCTCA-GA-TGAGCT--gatggacggacaacagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCTA--TGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAATAT--------------------CCCCTACTGGGACACCAATAAGCCATAGCTCCTTGATTTGGA-ACA----TTTGGA-A---CCTC
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGT---TA-GAA--GAC
gi|17 : -C-----AC-----A-GG-A----------C-------GATCAAAATAGCTCATCA-TGAGCTAAATG-CTC-AGGTGAGC-TAAAaga
gi|18 : GGTTTAAGACAAGAAGTCATCTGAACCAATAGT---TA-A-C--GACG-------GA-C-----GG-----ACAG-aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAAT-----TTAAA-------ATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTGAA-AT-----TTTGAA-A---CCCCAACTCCTGG-GGACC-------T---TACCTAATATGA---ACA-A--G-GGCTGATTTGTTCTTGAGA--ATTT-T--TTTTAAGA-------AAT----TCT-CAATT---T---TATTC-TTTCT-TAGG--CTCCTA-TGGACCCTTGC--G-TGTAT-TATATACC--CATT--AATC-ACCCAGTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATAGGGATC---ATTT-----ATGCCAAATA--TGAATGAATTTG-ACAC-CTCAGTTCTTGAGAAGA-ATATTTTTGA-A-----AATTCACAATT---T---CATCCCTTTT---TGGG-CCCTTGTTC-GTTC--CTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAGTTAATACTACATACAAAAT-ATCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGT---TA-G-A--GACG-------TA-C-----AC-----ATGG------------C-------AATCACATTAACTCAACT-TGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTGAA-ACG----TCTA--------CTCA--TA---G-TTATCA---TT-T--ATACAAAATAT-ATTTGCA-T--TTGGCTCTTCATGTCTAGAGA--AGAT-GAGTTTT--AA-------AATAATTTCT-CAATG---T---TACCC-TTT-----AA--CTCCTACTGACCCCTTATTAA-T--AT-TAAAT-CC--CTTTTAAAGT-AATCAATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCTA--TATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAAC-AAA--CT--AGAAACCTCAACGGAATCATA---------ATAT-----ATACCAAATA--TAAACAAATGTG-GC-TGTTCGGTTCTTGAGACGA-ATATTTTT-A-A-----ATTTCAC-ATT-------------TTTTAAATGAA----CTGATATGTTCAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---TGA-AC-ACATCTGAGATAATCAGA----------TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTA--TACG-ACGGACGATGGACTTA-C-----GG-----ACGA-CGGACAAAAAAC-------GATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGATGAATGAATTTG-GC-T-C----------ATAAGA----TTTTTGA-T-----ATTTAACAGTT---T---TA-CCCTTTT---TTGG-CTTCTGCTG-TCCC--CTTAc
gi|4 : TTGGCTCATAAGA-------T--TTTT--GA-------TAT----TTAACAGTT---T---TACCC-TTTTT-T-GG--CTTCTGCTGTCCCCTTAC----T---C-TAAATCCT--CTTT--AAAGGACTAAGTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTTT------------ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TCATA---------------------CCAAATT--TG------TCTG-GC-T----GGTTCTTGAGAACA-AGATTTTTGA-A-----ATATCAGAATT---T---TActctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|4 : ccaaacagatgaatgaatAACAAA-CATGAGAGCAACTGATTAGGTGATACTAAATGCAAAAT-ATCA-------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgGCAAAAT-ATCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACA-CGAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGT---TA-A-T--TACG-------GA-CGGATGACAGATGACGG-A----------CTAAGGTAGATCACAATAGCTCATCC-TGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : cagATATGCAAAAT-ATTAAAGCGCCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGT---TA-A-C--AACG-------TA-C-----GG-----ACG
gi|7 : TTT-T--TTTT--GA-------AAT----TC--AAACT---A---TAATCATTTTT-T-GGG-CCCCTGCTGG------------------------CC--TTTT--AAGG-AC---------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTTA--TTTA---AAA------ATCT-------AAGTaacaactaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagattttttttA--CT--TAAATCCCTTAC----TCAT--GGATC---ATTT-----ATACCAAATA--TGCACAAATCTGAGT-C-ATCAGTTATTAAAAAG----ATTTTTGA-A-----AC-TCACAATT---G---AATTCCTCT
gi|8 : actA----CTTAAATC---CCTTA-CTC---ATGGATCA---TT-T--ATACCAAATATGC---ACA-AATCTGAGTCATCAGTTATTAAAA--A-GA-T--TTTT--GA-------AAC----TCA-CAATT---G---AA----TT------------CCT--------CTAAA--GTT--AT-TGAATGCC--CTTTA-AAGA-ACCTATTTTC----AACTGCTTTTGACTA-----AACaaagttattgaatgccctttaaagaacctattttcaactgcttttgactaaac
gi|9 : act----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCTA---------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGGATC---ATGGA----ACACCAAACA--TGGACACATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 55555555555555555 11111111111111111 3333333 111 222222 1111111 22222 111 3333333333 1111111 111111 11111111 1111111 3333333333333333 11 111 11111 3333333333333333 1111 11111111111111111 111 1111 1111 1111 666666666666666666 333333 222 1111 11 3333333 111 11 11 11 11 11 1 333 333 11111 111 11 11 11 1 1 1 444444444444444444444444444444444444444444444444444444444 1111 11 1 1 1
lowQualScore : 1 0 1 88 1111 66666666666666666 0 3 1 8 1 11 1 8 88888888888888888 0 8 7777777 444 000000 4444444 1 00000 33 222 2222222222 66 6666666 111111 66 44444444 2 4444444 1 11 2 0 8888888888888888 3 11 4 111 4 2 4 0 9999 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 1 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 1 4444 6 99 99 99 4444 333333333333333333 1 77 555555 666 7777 11 0 3333333 6 777 2 22 0 4 00 33 0 88 1 1 88 5 0 333 6 222 7 7 8 99999 66666 444 11 3 11 0 33 0 2 0 0 8 1 88 0 5 1 77 1 0 1 4 999999999999999999999999999999999999999999999999999999999 5 0000 99 0 0 0
lowQualScore : . . . .. .... ................. . . . . . .. . . ................. . . ....... ... ...... ....... . ..... .. ... .......... .. ....... ...... .. ........ . ....... . .. . . ................ . .. . ... . . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . .. .. .. .... .................. . .. ...... ... .... .. . ....... . ... . .. . . .. .. . .. . . .. . . ... . ... . . . ..... ..... ... .. . .. . .. . . . . . . .. . . . .. . . . . ......................................................... . .... .. . . .
lowQualScore : 0 7 0 33 2222 55555555555555555 2 2 0 0 4 66 0 0 00000000000000000 3 0 6666666 000 888888 3333333 7 88888 22 555 7777777777 99 2222222 888888 00 88888888 0 2222222 1 66 2 2 1111111111111111 8 99 4 444 4 7 4 1 4444 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 0 2222 7 88 22 22 2222 777777777777777777 7 88 444444 000 0000 00 8 6666666 5 555 5 55 2 2 22 88 2 55 0 0 00 5 7 333 7 333 3 3 0 44444 66666 000 00 8 00 8 88 0 5 0 0 8 0 66 6 6 4 00 0 7 4 0 444444444444444444444444444444444444444444444444444444444 0 0000 00 0 0 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTTAAA-A---CCTCA-CTCAT-GGG-ATCA---TTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CGA--TTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC--CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GGATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-GT-CGGTTCTTGAGAAGA-ATATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGG-CCCCTGTTG-GCCC--CTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-TGATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT-TA-G-N-----GACG-GACG-----NA-----C-GG--------------AC-------G-ATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTCAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTTAAA-A---CCTCA-CTC-T-GGG-ATCA---TTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CGN--TTTTT--GA-------AA-T----TCN-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATACC--CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GGATC---ATTT-----ATACCAAATATGAACGAATTTGGC-T-NT-CGGTTCTTGAGAAGA-A-ATTTTTGA----AAT--TTCACAATT---T---TATCCCTTTT---TGGG-CCCCTGCTG-GCCC--CTTATGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-TGATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT-TA-G-A-----GACG-NACG-----CA-----C-GG--------------AC-------G-ATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
gi|1 : -AA-G-G-ATTCA-GTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCTA--TGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGGATC---ATTTTGTAAATACCAAATATGAACACATTTGGC-TGGG-CAGTTCTTGAGAAGACG-ATTTTTGA----AAT--TTCACAATTACATGTATATCCTTTTT---T-GG-CCTCTGTTG-ACCC--CTTATTAA
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-------------TTCAAAGTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA----CTATAA-A---CCCTA-CTCATAGGG-ATCA---TTTTGTAAATACCAAATA--T----GAACACATT-T-GGCTGGGCAGTTCTTGAGAAGA--CGA--TTTTT--GA-------AATT----TCA-CAATTACATGTATATCCTTTTT-T-GG--CCTCTGTTGACCCCT-------T--AT-TAAATAAC--CTGT-AA-ATG-ACCCA-GTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTTA--TGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA---ACCAAAATTT-----ATAATCAATATAAACAAACTTGGCTT-GT-TGCTTCTTGAGAAGA-A-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTCCCTTTCTG-ACCC--TTTATGAAataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTGAA-AAAAAACCTTAAA-AAACCCAAA-CTCAT-A---ACCAAAATTT-----ATAATCAATA--T----AAACAAACT-T-GGCTTGTTGCTTCTTGAGA--A---GAAATTTCT--GATACCAGTAA-T----TCA-CAATT---G---TATCCAATTT-T-GGGTCCCTTTCTGACCCTTTAT--G-A--AT----ATATCTGCTTT-AAAG-G-ACCCA-GTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGT-T---------------TATG-----GA-----C-TG--------------AC-------GAATCAC-ACAGTTCAggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgT--AA-------AA-A----TCA-CAATG---T---TATCCTTTTTGT-AT--CTCCTGCTAGCTTTTTAT--G-G--ACATGCATGCTT-CTTT-AA-A-G-GGTCATATCTA----AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGTatc
gi|11 : tgaaacAGAA-AAGTCGTCTGAAGCAAATGT-TA-T-C-----AACA-GACG-----GA-----C-GG--------------A
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGT-TT-GCA-----GACATGATG-----GA-----C-GG--------------AC-------A-Aaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTGT-TA-T-CT----GACG-GACC-----CA-----C-GG--------------ACGGAACGTG-ATCACAATAGCTCA-G-ATGAGCT--cagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCTA--TGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAATA------------T-------CCCC-TACTGGGACACCAATAAGCCATAGCTCCTTGATTTGGA-ACA----TTTGGA-A---CCTC
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGT-TA-GAA-----GACA-GA
gi|17 : -----CA-----CAGG--------------AC-------G-ATCAAAATAGCTCATC-ATGAGCTAAATG-CTC-AGGTGAGC-TAAA
gi|18 : GGTTTAAGACAAGAAGTCATCTGAACCAATAGT-TA-A-C-----GACG-GACG-----GA-----C-AG--------------aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAA------------TTTAAAATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTGAA-AT-----TTTGAA-A---CCCCAACTCCT-GGG-GACC---TT--------ACCTAATA--T----GAACAAG-----GGCTGATTTGTTCTTGAGA--A--TTT--TTTTTAAGA-------AA-T----TCT-CAATT---T---TATTCTTTCT-TAGG--CTCCTA-TGGACCCTTGC--G-TGTAT-TATATACC--CATT-AA-T-C-ACCCA-GTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATAGGGATC---ATTT-----ATGCCAAATATGAATGAATTTGACAC-CT-CAGTTCTTGAGAAGA-ATATTTTTGA----AAA--TTCACAATT---T---CATCCCTTTT---TGGG-CCCTTGTTC-GTTC--CTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAGTTAATACTACATACAAAAT-ATCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGT-TA-G-A-----GACG-TACA-----CA-----T-GG---------------C-------A-ATCACATTAACTCAAC-TTGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTGAA-ACG----TCTA--------CTCA-----T-AGTTATCA---TTT-----ATACAAAATA--TATTTGCAT----T-T-GGCTCTTCATGTCTAGAGA--AGATGA--GTTTT--AA-------AA-TAATTTCT-CAATG---T---TACCCTTT-----AA--CTCCTACTGACCCCTTATTAA-T--AT-TAAATCCC--TTTT-AA-A-GTAATCA-ATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCTA--TATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAACAAA---CT--AGAAACCTCAACGGAATCATA---------ATAT-----ATACCAAATATAAACAAATGTGGC-T-GTTCGGTTCTTGAGACGA-ATATTTTT-A----AAT--TTCAC-ATT-------------TTTTAAATGAA----CTGATATGTTCAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---TGA-AC-ACATCTGAGATAATCAGA----------TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTATACG-ACGGACGATG-GACT-----TA-----C-GGACGACGGACAAAAAAC-------G-ATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGAT----GAATGAA-T-TTGGCTCAT-----------A--A---GA--TTTTT--GA-------TA-T----TTAACAGTT---T---TACCCTTTTT-T-GG--CTTCTGCTGTCCCCTTAC----T---C-TAAATCCT--CTTT-AAAG-G-ACTAA-GTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTTT------------ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TCATA---------------------CCAAATTTG------TCTGGC-T-----GGTTCTTGAGAACA-AGATTTTTGA----AAT--ATCAGAATT---T---TAc
gi|4 : AACAAA-CATGAGAGCAACTGATTAGGTGATACTAAATGCAAAAT-ATCA-------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgCAGGCAAAAT-ATCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACAC-GAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGT-TA-A-T-----TACG-GACGGATGACAGATGAC-GG--------------ACTAAGGTAG-ATCACAATAGCTCATC-CTGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : ATATGCAAAAT-ATTAAAGCGCCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGT-TA----------AC--AACG-----TA-----C-GG--------------AC-------G-A--ACAA
gi|7 : --TTTTT--GA-------AA-T----TCA-AACTA---T---AATCATTTTT-T-GGG-CCCCTGCTGGCCT--------------------------TTT-AA-G-G-AC----------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTTA--TTTA---AAA------ATCT-------AAGTctaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagatttttttttttA----CTTAAATC---CCTTA-CTC-A-TGG-ATCA---TTT-----ATACCAAATA--T----GCACAAA-TCT-GAGTCATCAGTTATTAAAA--A---GA--TTTTT--GA-------AA-C----TCA-CAATT---G---AATT-----------------------CCTCTAAA--GTT--AT-TGAATGCC--CTTTAAA-G-A-ACCTA-TTTTC----AACTGCTTTTGACTA-----AAC
gi|9 : act----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCTA---------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGGATC---ATGGA----ACACCAAACATGGACACATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 66666666666666 11111111111111111111111 22222 111 222222 1111111 22222 111 333333333 1111111 111111 11111111 1111111 4444444444444 11111 3333333333333333 1111 11111111111111111 111 1111 1111 1111 6666666666666666666 333333 1 1111 11 3333333 111 11 1111 11 11 1 333 22222 11111 111 11 11 11 1 1 1 2222 66666666666666666666666666666666666666 1111 11 1 1 1
lowQualScore : 1 0 1 88 1111 33333333333333 3 0 3 1 8 1 11 1 8 88888888888888888888888 22222 444 000000 4444444 1 00000 33 222 333333333 66 6666666 111111 5 44444444 2 4444444 1 11 2 0 0000000000000 3 6666 8 777 4 2 4 0 9999 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 1 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 1 4444 6 99 99 99 4444 3333333333333333333 1 3 111111 0 7777 11 0 3333333 4 777 2 33 0 4444 0 0 88 1 1 88 5 0 333 6 33333 7 7 8 99999 66666 444 11 3 11 0 33 0 2 0 0 8 1 88 0 5 1 8 3 1 0 1 4 4 0000 4 22222222222222222222222222222222222222 0000 99 0 0 0
lowQualScore : . . . .. .... .............. . . . . . . .. . . ....................... ..... ... ...... ....... . ..... .. ... ......... .. ....... ...... . ........ . ....... . .. . . ............. . .... . ... . . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . .. .. .. .... ................... . . ...... . .... .. . ....... . ... . .. . .... . . .. . . .. . . ... . ..... . . . ..... ..... ... .. . .. . .. . . . . . . .. . . . . . . . . . . .... . ...................................... .... .. . . .
lowQualScore : 0 7 0 33 2222 88888888888888 2 2 2 0 0 4 66 0 0 11111111111111111111111 44444 000 888888 3333333 7 88888 22 555 000000000 99 2222222 888888 0 88888888 0 2222222 1 66 2 2 1111111111111 5 2222 9 000 4 7 4 1 4444 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 0 2222 7 88 22 22 2222 7777777777777777777 7 0 666666 4 0000 00 8 6666666 5 555 5 88 2 0000 2 7 55 0 0 00 5 7 333 7 33333 3 3 0 44444 66666 000 00 8 00 8 88 0 5 0 0 8 0 66 6 6 4 2 8 0 7 4 0 0 3333 0 33333333333333333333333333333333333333 0000 00 0 0 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTTAAA-A---CCCCA-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAG-T-TA-N-CGACG-GACG----------GACGG--------------AC-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTTAAA-A---CCTCA-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAATATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGGCCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAG-T-TA-G-NGACG-GACG----------NACGG--------------AC-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
gi|1 : -AA-G-G-ATTCA-GTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCTA--TGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGG-ATC---ATTTTGTAAATACCAAATATGAACACATTTGGC-TGG-GCAGTTCTTGAGAAGACGATTTTTGA----AAT--TTCACAATTACATGTATATCCTTTTT---T-GGCC--TCTGT-TGACCCCTTA
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-------------TTCAAAGTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA----CTATAA-A---CCCTA-CTCATAGGG-ATC---ATTTTGTAAATACCAAATA--T----GAACACATT-T-GGCTGGGCAGTTCTTGAGAAGA--CG--ATTTTT--GA-------AATT----TCA-CAATTACATGTATATCCTTTTT-T-GG--CCTCTGTTGACCCCT-------T--AT-TAAATAAC-CTGT-AA-ATG-ACCCA-GTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTTA--TGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA----ACCAAAATTT-----ATAATCAATATAAACAAACTTGGCTT-G-TTGCTTCTTGAGAAGAA-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTC--CCTTTCTGACCCTTTATGAAttaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTGAA-AAAAAACCTTAAA-AAACCCAAA-CTCAT---A-ACCAAAATTT-----ATAATCAATA--T----AAACAAACT-T-GGCTTGTTGCTTCTTGAGA--A---GAAATTTCT--GATACCAGTAA-T----TCA-CAATT---G---TATCCAATTT-T-GGGTCCCTTTCTGACCCTTTAT--G----AA-TATATCTG-CTTTAAA-G-G-ACCCA-GTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGTT-TA-T-GGACT-GACG----------A----------------------------ATCAC-ACAGTTCAggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgT--AA-------AA-A----TCA-CAATG---T---TATCCTTTTTGT-AT--CTCCTGCTAGCTTTTTAT--G-G--ACATGCATGCTTCTTT-AA-A-G-GGTCATATCTA----AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGTatc
gi|11 : tgaaacAGAA-AAGTCGTCTGAAGCAAATG-T-TA-T-CAACA-GACG----------GACGG--------------A
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAG-T-TT-GCAGACATGATG----------GACGG--------------AC-------AAaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTG-T-TATC-TGACG-GACC----------CACGG--------------ACGGAACGTGATCACAATAGCTCA-G-ATGAGCT--cagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCTA--TGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAA----------------TA---TCCCC-TACTGGGACACCAATAAGCCATAGCTCCTTGATTTGGA-ACA----TTTGGA-A---CCTC
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTG-T-TA-GAAGACA-GA
gi|17 : GG--------------AC-------GATCAAAATAGCTCATC-ATGAGCTAAATG-CTC-AGGTGAGC-TAAA
gi|18 : cacaGGTTTAAGACAAGAAGTCATCTGAACCAATAG-T-TA-A-CGACG-GACG----------GACAG--------------aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAA------------TTTAAAATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTGAA-AT-----TTTGAA-A---CCCCAACTCCT-GGG-GAC---CTT--------ACCTAATA--T----GAACAAG-----GGCTGATTTGTTCTTGAGA--A--TT--TTTTTTAAGA-------AA-T----TCT-CAATT---T---TATTCTTTCT-TAGG--CTCCTA-TGGACCCTTGC--G-TGTAT-TATATACC-CATT-AA-T-C-ACCCA-GTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATA-GGGATC---ATTT-----ATGCCAAATATGAATGAATTTGACAC-C-TCAGTTCTTGAGAAGAATATTTTTGA----AAA--TTCACAATT---T---CATCCCTTTT---TGGGCC--CTTGT-TCGTTCCTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAG-TTAATACTACATACAAAAT-ATCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAG-T-TA-G-AGACG-TACA----------CATGG---------------C-------AATCACATTAACTCAAC-TTGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTGAA-ACG----TCTA-------------CTCAT-AGTTATC---ATTT-----ATACAAAATA--TATTTGCAT----T-T-GGCTCTTCATGTCTAGAGA--AGATG--AGTTTT--AA-------AA-TAATTTCT-CAATG---T---TACCCTTT-----AA--CTCCTACTGACCCCTTATTAA-T--AT-TAAATCCC-TTTT-AA-A-GTAATCA-ATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCTA--TATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAACAAA---CT--AGAAACCTCAACGGAATCATA----------ATAT-----ATACCAAATATAAACAAATGTGGC-T-GTTCGGTTCTTGAGACGAATATTTTT-A----AAT--TTCAC-ATT-------------TTTTAAATGAACTGATATGT-T--CAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---T-GA-AC-ACATCTGAGATAATCAGA----------TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAG-TATA---CGACG-GACGATGGACT---TACGGACGACGGACAAAAAAC-------GATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGAT----GAATGAA-T-TTGGCTCAT-----------A--A---G--ATTTTT--GA-------TA-T----TTAACAGTT---T---TACCCTTTTT-T-GG--CTTCTGCTGTCCCCTTAC----T---C-TAAATCCT-CTTT-AAAG-G-ACTAA-GTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTTT------------ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TCATA----------------------CCAAATTTG------TCTGGC-T-----GGTTCTTGAGAACAAGATTTTTGA----AAT--ATCAGAATT---T---TAc
gi|4 : AACAAA-CATGAGAGCAACTGATTAGGT-GATACTAAATGCAAAAT-ATCA-------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgCAGGCAAAAT-ATCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACA-CGAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAG-T-TA-A-TTACG-GACGGATGACAGATGACGG--------------ACTAAGGTAGATCACAATAGCTCATC-CTGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : ATATGCAAAAT-ATTAAAGCGCCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAG-T-TA-A-CAACG-TACG----------GACGA--------------AC-------AA
gi|7 : TTTTT--GA-------AA-T----TCA-AACTA---T---AATCATTTTT-T-GGG-CCCCTGCTGGCCT-------------------------TTT-AA-G-G-AC----------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTTA--TTTA---AAA------ATCT-------AAGTctaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagatttttttttttA----CTTAAATC---CCTTA-CTCAT-GG--ATC---ATTT-----ATACCAAATA--T----GCACAAA-TCT-GAGTCATCAGTTATTAAAA--A---G--ATTTTT--GA-------AA-C----TCA-CAATT---G---AATT-----------------------CCTCTAAA--GTT--AT-TGAATGCC-CTTTAAA-G-A-ACCTA-TTTTC----AACTGCTTTTGACTA-----AAC
gi|9 : act----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCTA---------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGG-ATC---ATGGA----ACACCAAACATGGACACATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 66666666666666 222222222222 111 22222 111 222222 1111111 22222 111 333333333 1111111 111111 11111111 1111111 4444444444444 11111 3333333333333333 1111 11111111111111111 111 1111 1111 1111 6666666666666666666 333333 1111 11 3333333 111 11 1111 11 11 1 333 22222 11111 111 11 11 11 1 1 1 1111 44444444444444 3333333333333333333 1111 11 1 1 1
lowQualScore : 1 0 1 88 1111 33333333333333 3 0 3 1 8 1 11 1 8 666666666666 555 8 22222 444 000000 4444444 1 00000 33 222 333333333 66 6666666 111111 5 44444444 2 4444444 1 11 2 0 0000000000000 3 6666 8 777 4 2 4 0 9999 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 1 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 1 4444 6 99 99 99 4444 3333333333333333333 1 3 111111 8 7777 11 0 3333333 4 777 2 33 0 0000 0 0 88 1 1 88 5 0 333 6 33333 7 7 8 99999 66666 444 11 3 11 0 33 0 2 0 0 8 1 88 0 5 1 8 3 1 0 1 4 7777 4 8888 55555555555555 1111111111111111111 0000 99 0 0 0
lowQualScore : . . . .. .... .............. . . . . . . .. . . ............ ... . ..... ... ...... ....... . ..... .. ... ......... .. ....... ...... . ........ . ....... . .. . . ............. . .... . ... . . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . .. .. .. .... ................... . . ...... . .... .. . ....... . ... . .. . .... . . .. . . .. . . ... . ..... . . . ..... ..... ... .. . .. . .. . . . . . . .. . . . . . . . . . .... . .... .............. ................... .... .. . . .
lowQualScore : 0 7 0 33 2222 88888888888888 2 2 2 0 0 4 66 0 0 888888888888 555 0 44444 000 888888 3333333 7 88888 22 555 000000000 99 2222222 888888 0 88888888 0 2222222 1 66 2 2 1111111111111 5 2222 9 000 4 7 4 1 4444 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 0 2222 7 88 22 22 2222 7777777777777777777 7 0 666666 8 0000 00 8 6666666 5 555 5 88 2 5555 2 7 55 0 0 00 5 7 333 7 33333 3 3 0 44444 66666 000 00 8 00 8 88 0 5 0 0 8 0 66 6 6 4 2 8 0 7 4 0 4444 0 5555 66666666666666 3333333333333333333 0000 00 0 0 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--GAAACCC-T-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT-TA-AC-GACG-G----ACG--------------GACGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--AAAACCC-C-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGT-TA-NC-GACG-G----ACG--------------GACGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
gi|1 : -AA-G-G-ATTCA-GTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCTA--TGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGG-ATC---ATTTTGTAAATACCAAATATGAACACATTTGGC-TGG-GCAGTTCTTGAGAAGACGATTTTTGA----AAT--TTCACAATTACATGTATATCCTTTTT---T-GGCC--TCTGT-TGACCCCTTA
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-------------TTCAAAGTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA----CTA--TAAACCC-T-A-CTCATAGGG-ATC---ATTTTGTAAATACCAAATA--T----GAACACATT-T-GGCTGGGCAGTTCTTGAGAAGA--CG--ATTTTT--GA-------AATT----TCA-CAATTACATGTATATCCTTTTT-T-GG--CCTCTGTTGACCCCT-------T--AT-TAAATAAC-CTGT-AA-ATG-ACCCA-GTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTTA--TGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA----ACCAAAATTT-----ATAATCAATATAAACAAACTTGGCTT-G-TTGCTTCTTGAGAAGAA-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTC--CCTTTCTGACCCTTTATGAAttaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTGAA-AAAAAACCTTAAAAAACCCAA-A-CTCAT---A-ACCAAAATTT-----ATAATCAATA--T----AAACAAACT-T-GGCTTGTTGCTTCTTGAGA--A---GAAATTTCT--GATACCAGTAA-T----TCA-CAATT---G---TATCCAATTT-T-GGGTCCCTTTCTGACCCTTTAT--G----AA-TATATCTG-CTTTAAA-G-G-ACCCA-GTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGT-T-----TATG-G----ACT--------------GACG--------------------AATCAC-ACAGTTCAggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgT--AA-------AA-A----TCA-CAATG---T---TATCCTTTTTGT-AT--CTCCTGCTAGCTTTTTAT--G-G--ACATGCATGCTTCTTT-AA-A-G-GGTCATATCTA----AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGTatc
gi|11 : tgaaacAGAA-AAGTCGTCTGAAGCAAATGT-TA-TC-AACA-G----ACG--------------GACGG-------A---
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGT-TT-GCAGACATG----ATG--------------GACGG-------A---C-------AAaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTGT-TA-TCTGACG-GACCCACG--------------GACGG-------AACGT-------GATCACAATAGCTCA-G-ATGAGCT--cagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCTA--TGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAA----------------TA---TCCCC-TACTGGGACACCAATAAGCCATAGCTCCTTGATTTGGA-ACA----TTT--GGAACCT-C-
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGT-TAGAA-GACA-G----A
gi|17 : GG-------A---C-------GATCAAAATAGCTCATC-ATGAGCTAAATG-CTC-AGGTGAGC-TAAA
gi|18 : cacaGGTTTAAGACAAGAAGTCATCTGAACCAATAGT-TA-AC-GACG-G----ACG--------------GACAG-------aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAA------------TTTAAAATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTGAA-AT-----TTT--GAAACCC-C-AACTCCT-GGG-GAC---CTT--------ACCTAATA--T----GAACAAG-----GGCTGATTTGTTCTTGAGA--A--TT--TTTTTTAAGA-------AA-T----TCT-CAATT---T---TATTCTTTCT-TAGG--CTCCTA-TGGACCCTTGC--G-TGTAT-TATATACC-CATT-AA-T-C-ACCCA-GTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATA-GGGATC---ATTT-----ATGCCAAATATGAATGAATTTGACAC-C-TCAGTTCTTGAGAAGAATATTTTTGA----AAA--TTCACAATT---T---CATCCCTTTT---TGGGCC--CTTGT-TCGTTCCTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAG-TTAATACTACATACAAAAT-ATCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGT-TA-GA-GACG-T----ACA--------------CATGG-----------C-------AATCACATTAACTCAAC-TTGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTGAA-ACG----T----------C-T-A-CTCAT-AGTTATC---ATTT-----ATACAAAATA--TATTTGCAT----T-T-GGCTCTTCATGTCTAGAGA--AGATG--AGTTTT--AA-------AA-TAATTTCT-CAATG---T---TACCCTTT-----AA--CTCCTACTGACCCCTTATTAA-T--AT-TAAATCCC-TTTT-AA-A-GTAATCA-ATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCTA--TATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAACAAA---CT--AGAAACCTCAACGGAATCATA----------ATAT-----ATACCAAATATAAACAAATGTGGC-T-GTTCGGTTCTTGAGACGAATATTTTT-A----AAT--TTCAC-ATT-------------TTTTAAATGAACTGATATGT-T--CAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---T-GA-AC-ACATCTGAGATAATCAGA----------TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTATA--C-GACG-G----ACGATGGACTTACGGACGACGGACAAAAAA---C-------GATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGAT----GAATGAA-T-TTGGCTCAT-----------A--A---G--ATTTTT--GA-------TA-T----TTAACAGTT---T---TACCCTTTTT-T-GG--CTTCTGCTGTCCCCTTAC----T---C-TAAATCCT-CTTT-AAAG-G-ACTAA-GTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTTT------------ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TCATA----------------------CCAAATTTG------TCTGGC-T-----GGTTCTTGAGAACAAGATTTTTGA----AAT--ATCAGAATT---T---TAc
gi|4 : AACAAA-CATGAGAGCAACTGATTAGGT-GATACTAAATGCAAAAT-ATCA-------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgCAGGCAAAAT-ATCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACA-CGAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGT-TA-AT-TACG-G----ACGGATGACAGAT----GACGG-------A---CTAAGGTAGATCACAATAGCTCATC-CTGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : ATATGCAAAAT-ATTAAAGCGCCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGT-TA-AC-AACG-T----ACG--------------GACGA-------A---C-------AA
gi|7 : TTTTT--GA-------AA-T----TCA-AACTA---T---AATCATTTTT-T-GGG-CCCCTGCTGGCCT-------------------------TTT-AA-G-G-AC----------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTTA--TTTA---AAA------ATCT-------AAGTctaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagatttttttttttA----CTT--AAATCCC-TTA-CTCAT-GG--ATC---ATTT-----ATACCAAATA--T----GCACAAA-TCT-GAGTCATCAGTTATTAAAA--A---G--ATTTTT--GA-------AA-C----TCA-CAATT---G---AATT-----------------------CCTCTAAA--GTT--AT-TGAATGCC-CTTTAAA-G-A-ACCTA-TTTTC----AACTGCTTTTGACTA-----AAC
gi|9 : act----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCTA---------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGG-ATC---ATGGA----ACACCAAACATGGACACATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 66666666666666 222222222222 111 22222 111 222222 1111111 22222 111 333333333 1111111 111111 11111111 1111111 4444444444444 11111 3333333333333333 1111 11111111111111111 111 1111 1111 1111 6666666666666666666 333333 1111 11 3333333 111 11 1111 11 11 1 333 22222 11111 111 11 11 11 1 1 1 11111 444444444444444444444444444444444444444444444444 1111 11 1 1 1
lowQualScore : 1 0 1 88 1111 33333333333333 3 0 3 1 8 1 11 1 8 666666666666 555 8 22222 444 000000 4444444 1 00000 33 222 333333333 66 6666666 111111 5 44444444 2 4444444 1 11 2 0 0000000000000 3 6666 8 777 4 2 4 0 9999 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 1 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 1 4444 6 99 99 99 4444 3333333333333333333 1 3 111111 8 7777 11 0 3333333 4 777 2 33 0 0000 0 0 88 1 1 88 5 0 333 6 33333 7 7 8 99999 66666 444 11 3 11 0 33 0 2 0 0 8 1 88 0 5 1 77 1 0 1 33333 4 8888 000000000000000000000000000000000000000000000000 0000 99 0 0 0
lowQualScore : . . . .. .... .............. . . . . . . .. . . ............ ... . ..... ... ...... ....... . ..... .. ... ......... .. ....... ...... . ........ . ....... . .. . . ............. . .... . ... . . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . .. .. .. .... ................... . . ...... . .... .. . ....... . ... . .. . .... . . .. . . .. . . ... . ..... . . . ..... ..... ... .. . .. . .. . . . . . . .. . . . .. . . . ..... . .... ................................................ .... .. . . .
lowQualScore : 0 7 0 33 2222 88888888888888 2 2 2 0 0 4 66 0 0 222222222222 222 0 44444 000 888888 3333333 7 88888 22 555 000000000 99 2222222 888888 0 88888888 0 2222222 1 66 2 2 1111111111111 5 2222 9 000 4 7 4 1 4444 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 0 2222 7 88 22 22 2222 7777777777777777777 7 0 666666 8 0000 00 8 6666666 5 555 5 88 2 5555 2 7 55 0 0 00 5 7 333 7 33333 3 3 0 44444 66666 000 00 8 00 8 88 0 5 0 0 8 0 66 6 6 4 00 0 7 4 88888 0 5555 666666666666666666666666666666666666666666666666 0000 00 0 0 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--GAAACCC-T-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--GAAACCC-T-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
gi|1 : -AA-G-G-ATTCA-GTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCTA--TGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGG-ATC---ATTTTGTAAATACCAAATATGAACACATTTGGC-TGG-GCAGTTCTTGAGAAGACGATTTTTGA----AAT--TTCACAATTACATGTATATCCTTTTT---T-GGCC--TCTGT-TGACCCCTTA
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-------------TTCAAAGTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA----CTA--TAAACCC-T-A-CTCATAGGG-ATC---ATTTTGTAAATACCAAATA--T----GAACACATT-T-GGCTGGGCAGTTCTTGAGAAGA--CG--ATTTTT--GA-------AATT----TCA-CAATTACATGTATATCCTTTTT-T-GG--CCTCTGTTGACCCCT-------T--AT-TAAATAAC-CTGT-AA-ATG-ACCCA-GTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTTA--TGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA----ACCAAAATTT-----ATAATCAATATAAACAAACTTGGCTT-G-TTGCTTCTTGAGAAGAA-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTC--CCTTTCTGACCCTTTATGAAttaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTGAA-AAAAAACCTTAAAAAACCCAA-A-CTCAT---A-ACCAAAATTT-----ATAATCAATA--T----AAACAAACT-T-GGCTTGTTGCTTCTTGAGA--A---GAAATTTCT--GATACCAGTAA-T----TCA-CAATT---G---TATCCAATTT-T-GGGTCCCTTTCTGACCCTTTAT--G----AA-TATATCTG-CTTTAAA-G-G-ACCCA-GTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGTT-----TATG-G----ACT--------------GA----------CG--------------------AATCAC-ACAGTTCAggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgT--AA-------AA-A----TCA-CAATG---T---TATCCTTTTTGT-AT--CTCCTGCTAGCTTTTTAT--G-G--ACATGCATGCTTCTTT-AA-A-G-GGTCATATCTA----AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGTatc
gi|11 : tgaaacAGAA-AAGTCGTCTGAAGCAAATGTTA-TC-AACA-G----ACG--------------GA----------CGG-------A---
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGTTT-GCAGACATG----ATG--------------GA----------CGG-------A---C-------AAaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTGTTA-TCTGACG-GACCCACG--------------GA----------CGG-------AACGT-------GATCACAATAGCTCA-G-ATGAGCT--cagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCTA--TGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAA----------------TA---TCCCC-TACTGGGACACCAATAAGCCATAGCTCCTTGATTTGGA-ACA----TTT--GGAACC
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGTTAGAA-GACA-G----Atc
gi|17 : GG-------A---C-------GATCAAAATAGCTCATC-ATGAGCTAAATG-CTC-AGGTGAGC-TAAA
gi|18 : cacaGGTTTAAGACAAGAAGTCATCTGAACCAATAGTTA-AC-GACG-G----ACG--------------GA----------CAG-------aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAA------------TTTAAAATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTGAA-AT-----TTT--GAAACCC-C-AACTCCT-GGG-GAC---CTT--------ACCTAATA--T----GAACAAG-----GGCTGATTTGTTCTTGAGA--A--TT--TTTTTTAAGA-------AA-T----TCT-CAATT---T---TATTCTTTCT-TAGG--CTCCTA-TGGACCCTTGC--G-TGTAT-TATATACC-CATT-AA-T-C-ACCCA-GTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATA-GGGATC---ATTT-----ATGCCAAATATGAATGAATTTGACAC-C-TCAGTTCTTGAGAAGAATATTTTTGA----AAA--TTCACAATT---T---CATCCCTTTT---TGGGCC--CTTGT-TCGTTCCTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAG-TTAATACTACATACAAAAT-ATCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGTTA-GA-GACG-T----ACA--------------CA----------TGG-----------C-------AATCACATTAACTCAAC-TTGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTGAA-ACG----T----------C-T-A-CTCAT-AGTTATC---ATTT-----ATACAAAATA--TATTTGCAT----T-T-GGCTCTTCATGTCTAGAGA--AGATG--AGTTTT--AA-------AA-TAATTTCT-CAATG---T---TACCCTTT-----AA--CTCCTACTGACCCCTTATTAA-T--AT-TAAATCCC-TTTT-AA-A-GTAATCA-ATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCTA--TATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAACAAA---CT--AGAAACCTCAACGGAATCATA----------ATAT-----ATACCAAATATAAACAAATGTGGC-T-GTTCGGTTCTTGAGACGAATATTTTT-A----AAT--TTCAC-ATT-------------TTTTAAATGAACTGATATGT-T--CAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---T-GA-AC-ACATCTGAGATAATCAGA----------TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTAT-AC-GACG-G----ACGATGGACTTACGGACGA----------CGGACAAAAAA---C-------GATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGAT----GAATGAA-T-TTGGCTCAT-----------A--A---G--ATTTTT--GA-------TA-T----TTAACAGTT---T---TACCCTTTTT-T-GG--CTTCTGCTGTCCCCTTAC----T---C-TAAATCCT-CTTT-AAAG-G-ACTAA-GTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTTT------------ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TCATA----------------------CCAAATTTG------TCTGGC-T-----GGTTCTTGAGAACAAGATTTTTGA----AAT--ATCAGAATT---T---TAc
gi|4 : AACAAA-CATGAGAGCAACTGATTAGGT-GATACTAAATGCAAAAT-ATCA-------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgCAGGCAAAAT-ATCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACAC-GAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGTTA-AT-TACG-G----ACG--------------GATGACAGATGACGG-------A---CTAAGGTAGATCACAATAGCTCATC-CTGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : ATATGCAAAAT-ATTAAAGCGCCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGTTA-AC-AACG-T----ACG--------------GA----------CGA-------A---C-------AA
gi|7 : TTTTT--GA-------AA-T----TCA-AACTA---T---AATCATTTTT-T-GGG-CCCCTGCTGGCCT-------------------------TTT-AA-G-G-AC----------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTTA--TTTA---AAA------ATCT-------AAGTctaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagatttttttttttA----CTT--AAATCCC-TTA-CTCAT-GG--ATC---ATTT-----ATACCAAATA--T----GCACAAA-TCT-GAGTCATCAGTTATTAAAA--A---G--ATTTTT--GA-------AA-C----TCA-CAATT---G---AATT-----------------------CCTCTAAA--GTT--AT-TGAATGCC-CTTTAAA-G-A-ACCTA-TTTTC----AACTGCTTTTGACTA-----AAC
gi|9 : act----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCTA---------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGG-ATC---ATGGA----ACACCAAACATGGACACATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 66666666666666 222222222222 111 22222 111 222222 1111111 22222 111 333333333 1111111 111111 11111111 1111111 4444444444444 11111 3333333333333333 1111 11111111111111111 111 1111 1111 1111 6666666666666666666 333333 1111 11 3333333 111 11 1111 11 11 1 333 22222 11111 111 11 11 11 1 1 1 11111 444444444444444444444444444444444444444444444444 1111 11 1 1 1
lowQualScore : 1 0 1 88 1111 33333333333333 3 0 3 1 8 1 11 1 8 666666666666 555 8 22222 444 000000 4444444 1 00000 33 222 333333333 66 6666666 111111 5 44444444 2 4444444 1 11 2 0 0000000000000 3 6666 8 777 4 2 4 0 9999 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 1 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 1 4444 6 99 99 99 4444 3333333333333333333 1 3 111111 8 7777 11 0 3333333 4 777 2 33 0 0000 0 0 88 1 1 88 5 0 333 6 33333 7 7 8 99999 66666 444 11 3 11 0 33 0 2 0 0 8 1 88 0 5 1 77 1 0 1 33333 4 8888 000000000000000000000000000000000000000000000000 0000 99 0 0 0
lowQualScore : . . . .. .... .............. . . . . . . .. . . ............ ... . ..... ... ...... ....... . ..... .. ... ......... .. ....... ...... . ........ . ....... . .. . . ............. . .... . ... . . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . .. .. .. .... ................... . . ...... . .... .. . ....... . ... . .. . .... . . .. . . .. . . ... . ..... . . . ..... ..... ... .. . .. . .. . . . . . . .. . . . .. . . . ..... . .... ................................................ .... .. . . .
lowQualScore : 0 7 0 33 2222 88888888888888 2 2 2 0 0 4 66 0 0 222222222222 222 0 44444 000 888888 3333333 7 88888 22 555 000000000 99 2222222 888888 0 88888888 0 2222222 1 66 2 2 1111111111111 5 2222 9 000 4 7 4 1 4444 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 0 2222 7 88 22 22 2222 7777777777777777777 7 0 666666 8 0000 00 8 6666666 5 555 5 88 2 5555 2 7 55 0 0 00 5 7 333 7 33333 3 3 0 44444 66666 000 00 8 00 8 88 0 5 0 0 8 0 66 6 6 4 00 0 7 4 88888 0 5555 666666666666666666666666666666666666666666666666 0000 00 0 0 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--GAAACCC-T-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--GAAACCC-T-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
gi|1 : -AA-G-G-ATTCA-GTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCTA--TGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGG-ATC---ATTTTGTAAATACCAAATATGAACACATTTGGC-TGG-GCAGTTCTTGAGAAGACGATTTTTGA----AAT--TTCACAATTACATGTATATCCTTTTT---T-GGCC--TCTGT-TGACCCCTTA
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-------------TTCAAAGTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA----CTA--TAAACCC-T-A-CTCATAGGG-ATC---ATTTTGTAAATACCAAATA--T----GAACACATT-T-GGCTGGGCAGTTCTTGAGAAGA--CG--ATTTTT--GA-------AATT----TCA-CAATTACATGTATATCCTTTTT-T-GG--CCTCTGTTGACCCCT-------T--AT-TAAATAAC-CTGT-AA-ATG-ACCCA-GTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTTA--TGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA----ACCAAAATTT-----ATAATCAATATAAACAAACTTGGCTT-G-TTGCTTCTTGAGAAGAA-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTC--CCTTTCTGACCCTTTATGAAttaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTGAA-AAAAAACCTTAAAAAACCCAA-A-CTCAT---A-ACCAAAATTT-----ATAATCAATA--T----AAACAAACT-T-GGCTTGTTGCTTCTTGAGA--A---GAAATTTCT--GATACCAGTAA-T----TCA-CAATT---G---TATCCAATTT-T-GGGTCCCTTTCTGACCCTTTAT--G----AA-TATATCTG-CTTTAAA-G-G-ACCCA-GTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGTT-----TATG-G----ACT--------------GA----------CG--------------------AATCAC-ACAGTTCAggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgT--AA-------AA-A----TCA-CAATG---T---TATCCTTTTTGT-AT--CTCCTGCTAGCTTTTTAT--G-G--ACATGCATGCTTCTTT-AA-A-G-GGTCATATCTA----AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGTatc
gi|11 : tgaaacAGAA-AAGTCGTCTGAAGCAAATGTTA-TC-AACA-G----ACG--------------GA----------CGG-------A---
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGTTT-GCAGACATG----ATG--------------GA----------CGG-------A---C-------AAaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTGTTA-TCTGACG-GACCCACG--------------GA----------CGG-------AACGT-------GATCACAATAGCTCA-G-ATGAGCT--cagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCTA--TGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAA----------------TA---TCCCC-TACTGGGACACCAATAAGCCATAGCTCCTTGATTTGGA-ACA----TTT--GGAACC
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGTTAGAA-GACA-G----Atc
gi|17 : GG-------A---C-------GATCAAAATAGCTCATC-ATGAGCTAAATG-CTC-AGGTGAGC-TAAA
gi|18 : cacaGGTTTAAGACAAGAAGTCATCTGAACCAATAGTTA-AC-GACG-G----ACG--------------GA----------CAG-------aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAA------------TTTAAAATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTGAA-AT-----TTT--GAAACCC-C-AACTCCT-GGG-GAC---CTT--------ACCTAATA--T----GAACAAG-----GGCTGATTTGTTCTTGAGA--A--TT--TTTTTTAAGA-------AA-T----TCT-CAATT---T---TATTCTTTCT-TAGG--CTCCTA-TGGACCCTTGC--G-TGTAT-TATATACC-CATT-AA-T-C-ACCCA-GTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATA-GGGATC---ATTT-----ATGCCAAATATGAATGAATTTGACAC-C-TCAGTTCTTGAGAAGAATATTTTTGA----AAA--TTCACAATT---T---CATCCCTTTT---TGGGCC--CTTGT-TCGTTCCTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAG-TTAATACTACATACAAAAT-ATCAGAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGTTA-GA-GACG-T----ACA--------------CA----------TGG-----------C-------AATCACATTAACTCAAC-TTGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTGAA-ACG----T----------C-T-A-CTCAT-AGTTATC---ATTT-----ATACAAAATA--TATTTGCAT----T-T-GGCTCTTCATGTCTAGAGA--AGATG--AGTTTT--AA-------AA-TAATTTCT-CAATG---T---TACCCTTT-----AA--CTCCTACTGACCCCTTATTAA-T--AT-TAAATCCC-TTTT-AA-A-GTAATCA-ATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCTA--TATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAACAAA---CT--AGAAACCTCAACGGAATCATA----------ATAT-----ATACCAAATATAAACAAATGTGGC-T-GTTCGGTTCTTGAGACGAATATTTTT-A----AAT--TTCAC-ATT-------------TTTTAAATGAACTGATATGT-T--CAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---T-GA-AC-ACATCTGAGATAATCAGA----------TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTAT-AC-GACG-G----ACGATGGACTTACGGACGA----------CGGACAAAAAA---C-------GATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGAT----GAATGAA-T-TTGGCTCAT-----------A--A---G--ATTTTT--GA-------TA-T----TTAACAGTT---T---TACCCTTTTT-T-GG--CTTCTGCTGTCCCCTTAC----T---C-TAAATCCT-CTTT-AAAG-G-ACTAA-GTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTTT------------ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TCATA----------------------CCAAATTTG------TCTGGC-T-----GGTTCTTGAGAACAAGATTTTTGA----AAT--ATCAGAATT---T---TAc
gi|4 : AACAAA-CATGAGAGCAACTGATTAGGT-GATACTAAATGCAAAAT-ATCA-------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgCAGGCAAAAT-ATCA-AGCTCCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACAC-GAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGTTA-AT-TACG-G----ACG--------------GATGACAGATGACGG-------A---CTAAGGTAGATCACAATAGCTCATC-CTGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : ATATGCAAAAT-ATTAAAGCGCCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGTTA-AC-AACG-T----ACG--------------GA----------CGA-------A---C-------AA
gi|7 : TTTTT--GA-------AA-T----TCA-AACTA---T---AATCATTTTT-T-GGG-CCCCTGCTGGCCT-------------------------TTT-AA-G-G-AC----------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTTA--TTTA---AAA------ATCT-------AAGTctaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagatttttttttttA----CTT--AAATCCC-TTA-CTCAT-GG--ATC---ATTT-----ATACCAAATA--T----GCACAAA-TCT-GAGTCATCAGTTATTAAAA--A---G--ATTTTT--GA-------AA-C----TCA-CAATT---G---AATT-----------------------CCTCTAAA--GTT--AT-TGAATGCC-CTTTAAA-G-A-ACCTA-TTTTC----AACTGCTTTTGACTA-----AAC
gi|9 : act----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCTA---------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGG-ATC---ATGGA----ACACCAAACATGGACACATTT
blockSeqs : A T GT AATA AAAAAACACCAAAA A T C A C GC G . AAAAACCTTAAA AA A AGTT AAA T TATTT A CTT TG TGC AGATG AA TACCAGT TAATT A TG T TGGGT C TC A TGCGTGTAT T GCTT A AT T C T . C TGTCT G T TC GATAATCAGACCTCAA TT TG T A CT CACC A C C T A T T A TTTA CA CAT AAAAACACCAAAATTTT AT GG C TTGA T C ATGA A AA AC TA GGAA TGGATCATGGA A A TTGT T TACC AA G A AAA G GA CTGA AA G C AG T CA C AGGT T T A AAGCG TTTTG AAA CA C AG TG T C G A T T AT A C CA C G TGCA T ACCC ATGGACTTACGGACGACGGACAAAAAAC TCTG AA A A A
blockSeqs : G . . AA A T A . A CA G . CATTTG TT . GGG . T GAT A TTT GA TTG AGAA . . T . GT T GTAT T GC G TATTAATAT C CTG A AG . C . . . . A . . . TA . T . . . A . . G A T A C . . . ATCA CT AG C . C G . . CA . . . ACCAAAATTT A A ACCT T . . T C . G . TCG . . T . . . AGCT TTTCT . . T TG . . C . . G A C A T TA C G ATCT . . GATGACAGATGACGGACTAAGGTA TCA G . . .
blockSeqs : . . . . C . G AA T . TTTTG C . GG . T T G TCT CT CAT ATT . . A . TT C TAGG T AC G TATGGACA T ACC . G . T . . . . G . . . TT . T . . . A . . T A T T C . . . ATTA C AG T . A C . . CA . . . GGGATCATTT A A TGTT G . . T . . G . T . GA TTG . . T T . . . . . T G A A C CA T G AGAA . . GACGGAACGT ACT . . . .
blockSeqs : G . A TC C . CGT T . A . . T A TT CA CAG AG . . T . GT T TGGG T GC A AAAGTTAT A CCC . A . C . . . . T . . . TT . A . . . T . . T A A C C . . . ATCA C TA C . T C . . A . . . ATAT G C T . . . . . . . . . . . . G C . A G C G ATC . . GACGGAC TCC .
blockSeqs : T . . CA . AG . . T . TT T TGG T GC T TATGAA A CCT . T . T . . . . G . . . TT . A . . . A . . T A T T T . . . ATCT . . . . T A . . C . . . . . . C A AAC . . GACGAAC
blockSeqs : . . T . AT . AA C A G TACTC A GCC . A . T . . . . G . . . . . A . . . T . . A A T T C . . . ACCA A AGA . . CATGGC
blockSeqs : . . C . TG . . . . . . . . . G . C . . . . . . . . . . A . . . A . . T . A . . . . . A A TAC . .
blockSeqs : . G . . . . . . A . . . A . . . . . A AAT . .
blockSeqs : . T G AAC . .
blockSeqCons : CGTTTG****** GG*** T***** AG******* T***** TT****** TGGG*** TACGATAT***** **** CA ACCATNT************ T****** G**** CA AAC** GACGGAC***************************************** TCN*
originalCons : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ANA----CTT--GAAACCC-T-A-CTCAT-GGG-ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGA--A--CG--ATTTTT--GA-------AA-T----TCA-CAATT---T---TATCCTTTTT-T-GG--CCCCTGCTGGCCCCTTAC--G-T--AT-TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GG-ATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAGAGCTCCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
finalCons : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTGAA-ACGTTTG------AAACCC-T-A-CTCATGG---ATC---ATTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGAAG-------ATTTTT--GA-------AAT-----TCA-CAATTT------TATCCTTTTTTGGG---CCCCTGCTGGCCCCTTACGATAT-----TAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCTA--TGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATAACCATNT------------ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATTT------TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-T-GATACTACATGCAAAAT-ATCAG----CCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTAAC--GACG-G----ACGGACGGAC-----------------------------------------GATCACAATAGCTCATCN-TGAGCT--TTG-CTC-AGGTGAGC-TAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA
Alignments
lowQualScore : 11 2222 66666666666666 111 33333333333 11 111111 111 222222 1111111 22222 111 111 111 1111111 111111 11111111 3333333333333 11111 3333333333333333 1111 11111111111111111 111 1111 1111 11 1111 777777777777777777 333333 1111 11 3333333 111 11 1111 11 11 1 333 333 5555555555 111 11 11 11 1 1 1 11111 444444444444444444444444444444444444444444444444 1111 11 1 1 1
lowQualScore : 1 0 1 88 1111 33333333333333 3 0 3 1 8 1 11 1 444 33333333333 8 99 888888 444 000000 4444444 1 00000 33 222 111 77 000 888 6666666 111111 5 77777777 2 8888 44 2 0 9999999999999 6666 8 777 4 2 4 0 9999 4 11111 0 1 5 66 3333333333333333 33 66 0 1 4 66 8888 3 8 4 7 1 2 2 0 0 0000 66 888 88888888888888888 000 44 1 0 4444 1 1 4444 6 88 99 99 4444 000000000000000000 1 3 111111 8 7777 11 0 3333333 4 777 2 33 0 0000 0 0 88 1 1 88 5 0 333 6 222 7 7 8 6666666666 66666 444 11 3 11 0 33 0 2 0 0 8 1 88 0 5 1 77 1 0 1 33333 4 8888 000000000000000000000000000000000000000000000000 0000 99 0 0 0
lowQualScore : . . . .. .... .............. . . . . . . .. . ... ........... . .. ...... ... ...... ....... . ..... .. ... ... .. ... ... ....... ...... . ........ . .... .. . . ............. .... . ... . . . . .... . ..... . . . .. ................ .. .. . . . .. .... . . . . . . . . . .... .. ... ................. ... .. . . .... . . .... . .. .. .. .... .................. . . ...... . .... .. . ....... . ... . .. . .... . . .. . . .. . . ... . ... . . . .......... ..... ... .. . .. . .. . . . . . . .. . . . .. . . . ..... . .... ................................................ .... .. . . .
lowQualScore : 0 7 0 33 2222 88888888888888 2 2 2 0 0 4 66 0 000 11111111111 0 00 444444 000 888888 3333333 7 88888 22 555 777 99 000 888 2222222 888888 0 88888888 0 9999 88 2 2 4444444444444 2222 9 000 4 7 4 1 4444 4 11111 2 4 0 99 1111111111111111 55 99 5 0 4 11 5555 7 9 4 4 9 2 2 4 5 6666 99 888 11111111111111111 222 77 0 7 2222 0 0 2222 7 00 22 22 2222 222222222222222222 7 0 666666 8 0000 00 8 6666666 5 555 5 88 2 5555 2 7 55 0 0 00 5 7 333 7 333 3 3 0 2222222222 66666 000 00 8 00 8 88 0 5 0 0 8 0 66 6 6 4 00 0 7 4 88888 0 5555 666666666666666666666666666666666666666666666666 0000 00 0 0 0
consensus : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTG---AAA-----C-TTTGAAACCCT-AA-CTCAT--GG--ATCA---TTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGAA---GA--T---TTTT---GA-------AA-T----TCA-CAATT---T---TATCCTTTTTTGGG-CTCCTGCTGGCCCCTTAC-G-ATATTAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCT--ATGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA-GGATC---ATTT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-TGATACTACATGCAAAAT-ATCA----G----CCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
Reference ( family-100 ) : TGNGAATTTCCCGTTTTCNCAT--AGTATT----CCTATGTAAAAA------------TTTAAAGTCCCCTTACTGGGNC-CCAATGAACNATAGCCCCTTNATTTG---AAA-----CGTTTGAAACCCT-A--CTCAT--GG--ATCA---TTT-----ATACCAAATA--T----GAACAAA-T-T-GGCTCGTCGGTTCTTGAGAA---GA--T---TTTT---GA-------AA-T----TCA-CAATT---T---TATCCTTTTTTGGG-CCCCTGCTGGCCCCTTAC-G-ATATTAAATNCC-CTTT-AA-G-G-ACCCA-GTCTC----AACTG-TTATGACTA-----AACAATGCTCCAGAC-AT--CAA----------------GATGATTAA--AATAATNCCT-AA--A----ATAGATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCT--ATGTA---AAA------ATCA-------AAGTCC-C-CTTACTGGGCCCCAACGA----ANTNTAGCCC----C-TTCATTTGAACAAAA--CT--AGAAACCCCTAC----TCATA---ACC---ATNT-----ATACCAAATATGAACAAATTTGGC-T-G-TCGGTTCTTGAGAAGAANATTTTTGA----AAT--TTCACAATT---T---TATCCNTTTT---TGGGCC--CCTGT-TGACCCCTTACGAACCTCAAGGGTNGTGNCAGTTGTAACGAA-C-TGAGAGAAACTGATTAG-TGATACTACATGCAAAAT-ATCA----G----CCAGGCCTTGCACTTTCGGAGAA---GATT--TTTGAAATTTTGAAGAAAAA--AAA-ACTGATAAGCCCCT-GAGG-CGGGNCCAAATTTNACCCA-AGTGTCATGATTTGAACAAACTTGAGAGAGCTTCGTGTAAGAATGCTTCACACCAAATTTGGTGAAAATCTGTCAAGCGGTTTCAGAGAAGAAGTCGTTTGAAGCAAAAGTTA-AC-GACG-G----ACG--------------GA----------CGG-------A---C-------GATCACAATAGCTCATC-NTGAGCT--TTG-CTC-AGGTGAGC-TAAA
gi|1 : -AA-G-G-ATTCA-GTCTCTCATAACTG-CTATAAGTA-----AACAATGGTCCAGAT-CT--CAA----------------GGTAATTAA--AGTAATTCCT-TA--A-----T-GATGAGATGATGC-G-AATTTCCTGTTTTCCCATAGC----ATTCCT--ATGTA---ACA------TTCA-------AAGTCA-C-CTTACTGTGACCCAATGG----AGCATAGCCC----C-TTCATTTGAAC-AAA--CT--ATAAA-CCCTAC----TCATAGGGATC---ATTTTGTAAATACCAAATATGAACACATTTGGC-TGG-GCAGTTCTTGAGAAGACGATTTTTGA----AAT--TTCACAATTACATGTATATCCTTTTT---T-GGCC--TCTGT-TGACCCCTTA
gi|1 : taagtactggtacacaggcatgtataacaatcataacataTGCGAATTTCCTGTTTTCCCAT--AGCATT----CCTATGTAACA-------------TTCAAAGTCACCTTACTGTGAC-CCAATGGAGCATAGCCCCTTCATTTGAACAAA-----C-TAT-AAACCCT-A--CTCATAGGG--ATCA---TTTTGTAAATACCAAATA--T----GAACACATT-T-GGCTGGGCAGTTCTTGAGAAGACGA--T---TTTT---GA-------AATT----TCA-CAATTACATGTATATCCTTTTTT-GG-CCTCTGTTGACCCCT-------TATTAAATAAC-CTGT-AA-ATG-ACCCA-GTATC----AAATC-TCATAGCTA-----AACATTTCTCCAGAC-CT--CAAGATAATCAGACCTCAAGATGATTAA--AACAATTCTT-GA--A----ATAGA--GGATAA-AC-ATG---TCCTGTTTTATCATAGTTTTAATACTT--ATGTA---AAAAAAAACACCAAAATTTTAAGTCC-C-CTTATTGGGCTCAAATCA----ATGCTAGCCC----T-TTGATTTGAAAAAAAACCTTAAAAAACCCAAAC----TCATA---ACCAAAATTT-----ATAATCAATATAAACAAACTTGGCTT-G-TTGCTTCTTGAGAAGAA-ATTTCTGATACCAGTAATTCACAATT---G---TATCCAATTT---TGGGTC--CCTTTCTGACCCTTTATGAAttaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgaATGTCCTGTTTTATCAT--AGTTTTAATACTTATGTAAAAAAAAACACCAAAATTTTAAGTCCCCTTATTGGGCT-CAAATCAATGCTAGCCCTTTGATTTG---AAAAAAAACCTTAAAAAACCC-AAACTCAT--A---ACCAAAATTT-----ATAATCAATA--T----AAACAAACT-T-GGCTTGTTGCTTCTTGAGAA---GAAAT---TTCT---GATACCAGTAA-T----TCA-CAATT---G---TATCCAATTTTGGGTCCCTTTCTGACCCTTTAT-GAATAT---ATCTG-CTTTAAA-G-G-ACCCA-GTCTC----AACTG-CTATGACTA-----AAC------TCAAACTCT--CAA----------------GATGATAAA--TACAATTCCT-GA--A----ATAGATGTGAAAA-A--A-AATTTCCtatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|1 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacGGGGCCAAAGTTTATCTA-AGTGTCATGACTTG-ATAAACCTGAGAAAGTTTTATATAGGAATGCTTTTTATC--ATTTGTTGAAAAT-----AAGCGATTTCAAAGAAGGCATC-----AAGTAAAAGTT-----TATG-G----ACT--------------GA----------CG--------------------AATCAC-ACAGTTCAggaatggagtgggggccaaagtttatctaagtgtcatgacttgataaacctgagaaagttttatataggaatgctttttatcatttgttgaaaataagcgatttcaaagaaggcatcaagtaaaagtttatggactgacgaatcacacagttcaatc
gi|10 : taagtactggtacacaggcatgtataacaatcataacataaaggattcagtctctcataactgctataagtaaacaatggtccagatctcaaggtaattaaagtaattccttaatgatgagatgatgcgaatttcctgttttcccatagcattcctatgtaacattcaaagtcaccttactgtgacccaatggagcatagccccttcatttgaacaaactataaaccctactcatagggatcattttgtaaataccaaatatgaacacatttggctgggcagttcttgagaagacgatttttgaaatttcacaattacatgtatatccttttttggcctctgttgaccccttattaaataacctgtaaatgacccagtatcaaatctcatagctaaacatttctccagacctcaagataatcagacctcaagatgattaaaacaattcttgaaatagaggataaacatgtcctgttttatcatagttttaatacttatgtaaaaaaaaacaccaaaattttaagtccccttattgggctcaaatcaatgctagccctttgatttgaaaaaaaaccttaaaaaacccaaactcataaccaaaatttataatcaatataaacaaacttggcttgttgcttcttgagaagaaatttctgataccagtaattcacaattgtatccaattttgggtccctttctgaccctttatgaatatatctgctttaaaggacccagtctcaactgctatgactaaactcaaactctcaagatgataaatacaattcctgaaatagatgtgaaaaaaaatttccggaatggagtgT---AA-------AA-A----TCA-CAATG---T---TATCCTTTTTGTAT-CTCCTGCTAGCTTTTTAT-GGACAT-GCATGCTTCTTT-AA-A-G-GGTCATATCTA----AGATG-ACATGAATG-----AACAATGTTTCA--C-ATTCCAA----------------GATGATTAA--AATCATTCCTAAA--A----ATAGGTatc
gi|11 : tgaaacAGAA-AAGTCGTCTGAAGCAAATGTTA-TC-AACA-G----ACG--------------GA----------CGG-------A---
gi|12 : aGGTTTCAGAGAATGAGTAGTTTGAAGCAAAAGTTT-GCAGACATG----ATG--------------GA----------CGG-------A---C-------AAaaatgaacacagagcggtccaaaaagttaacttgcgagcgttcggttcaagtacgccagaaagagtaatggcgctaagcagag
gi|13 : TTCAGAGAAGAAGTCGTTTGTAGCAATTGTTA-TCTGACG-GACCCACG--------------GA----------CGG-------AACGT-------GATCACAATAGCTCA-G-ATGAGCT--cagacggcagacacagggcaattagaata
gi|14 : TACCT-AACTA----ATTGATGACAAAA-AC-AGAAAT-CCACTTTTCCCATAGT----AGTTCT--ATGTA---AAA------ATCA-------CAGa
gi|15 : atT----CCTATGTAAA----------------TA---TCCCCT-ACTGGGACACCAATAAGCCATAGCTCCTTGATTTG---GAA-----CATTTGGAACC
gi|16 : AATTTGATGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCGTTTGAAACAATTGTTAGAA-GACA-G----Atc
gi|17 : GG-------A---C-------GATCAAAATAGCTCATC-ATGAGCTAAATG-CTC-AGGTGAGC-TAAA
gi|18 : cacaGGTTTAAGACAAGAAGTCATCTGAACCAATAGTTA-AC-GACG-G----ACG--------------GA----------CAG-------aac
gi|2 : tTGAGAATTATACGTGTTCGCATGTAGTATT----CCTACGTAAAAA------------TTTAAAATTCCCTTACTAGGCC-CCAATGAACAATAGCTCCTTTATTTG---AAA-----T-TTTGAAACCCC-AA-CTCCT--GG--GG-A---CCT------TACCTAATA--T----GAACAAG-----GGCTGATTTGTTCTTGAGAA---TT--T---TTTTTAAGA-------AA-T----TCT-CAATT---T---TATTCTTTCTTAGG-CTCCTA-TGGACCCTTGC-GTGTATTATATACC-CATT-AA-T-C-ACCCA-GTCTC----AACTG-TAATGACTA-----AACAATGTCCCAGAC-AT--CAA----------------GATGTTTGA--AATAATACCT-AA--A----ATAAATGAGAAAA-AC-ATAATTTCCTGTTTTCCCATAGT----ATTCCT--ATGTA---AAA------ATTA-------AAGTCC-C-CTTACTAGGCCCCAACAA----ACTGTAACCC----C-TTCATTCGAACAAAA--CG--AGATACTCCTGC----TCATAGGGATC---ATTT-----ATGCCAAATATGAATGAATTTGACAC-C-TCAGTTCTTGAGAAGAATATTTTTGA----AAA--TTCACAATT---T---CATCCCTTTT---TGGGCC--CTTGT-TCGTTCCTTATGGACCTC--GGGTTATGGC--TTG-AACAAATC-TGAGAGAAACTGATTAGTTAATACTACATACAAAAT-ATCA----GAGCTCCAGGTCTTGCACTTTCAGAGAA---GATT--TCTGAAATTTTGAAGAAAAA--AAA-ACTGATGAGATCCT-AAGG-CGGGTTCAAATTTTACCCC-AGGGTCGTGATTTGAACAAACTTGGGAGAACTTCATGTAACAATGCTTCACACCAAATGTGGTATAAATCTGTCAAGTGGTTTAAGATAAGAAATCATTTGAAGCAAAAGTTA-GA-GACG-T----ACA--------------CA----------TGG-----------C-------AATCACATTAACTCAAC-TTGAGCT--TTG-CTCAAGGTGAGC-TAAA
gi|3 : GGC-TCAATAAACTCTAGCCCTATCATTTG---AAA-----CGT--------CT-A--CTCAT--AGTTATCA---TTT-----ATACAAAATA--TATTTGCAT----T-T-GGCTCTTCATGTCTAGAGAA---GA--TGAGTTTT---AA-------AA-TAATTTCT-CAATG---T---TACCCTTT----AA-CTCCTACTGACCCCTTATTA-ATATTAAATCCC-TTTT-AA-A-GTAATCA-ATATC----AACTA-TTATGACTATGTCTAACAATGCTACATAA-AT--CAA----------------TATGA--AATGAATTATAC----A--ACACCATTGATGAAAAAA-ACCATAATAACC-ATTTTCCCATAGT----ATTTCT--ATATA---GAA------A-------------------CTTACTAGGTTGCAGTGA----AATCTAGCTC----CATTCAAATGAAC-AAA--CT--AGAAACCTCAACGGAATCATA---------ATAT-----ATACCAAATATAAACAAATGTGGC-T-GTTCGGTTCTTGAGACGAATATTTTT-A----AAT--TTCAC-ATT-------------TTTTAAATGAACTGATATGT-T--CAACTTACAAGTCTCAAGGGTGGTGCCAGTTATAACGAA-----AGGGAAA-TGGCT---TGA-AC-ACATCTGAGATAATCA----G------A----TTGGAC-------GGT---AATTCATGTAAAA--TAGAAG-AAAA--AAA-CCTGATATACCCCTGGGGG-CGGAGTCAAATTTAATTTA-AATGTCACGATTT----AAACTCGAGAGTGCTTTGTGTATCAACGTTTCATACTAAGTTATGTGAAAATTTGTCAAACTGTTTCAGAGTAGTAGTTATTTGAAGCAAAAGTAT-AC-GACG-G----ACGATGGACTTACGGACGA----------CGGACAAAAAA---C-------GATCGCAAAAGCTCATCTGTGAGCCG-TTGACTT-AGGTGAGCATAA
gi|4 : acttCCAAACAGAT----GAATGAA-T-TTGGCTCAT-----------AA---GA--T---TTTT---GA-------TA-T----TTAACAGTT---T---TACCCTTTTTTGG--CTTCTGCTGTCCCCTTAC----T-CTAAATCCT-CTTT-AAAG-G-ACTAA-GTCTC----AACTG-TTATGTCTA-----AATAATGCTTCAGAC-AT--TAA----------------TAAGATTAG--AATTATACCA-AA--C----ACAGACGAGAAAA-AC-ATAATTTCCCATTT--------T----ATTCATACATGTACATAAA------ATCA-------AA-TCCAT-CTTACCTAGCCTCAATGT----ATTCTAGTCCATGAC-TTTTTTTAAA-AAAA--CT--TGAAACCTCTAC----TC---------------------ATACCAAATTTG------TCTGGC-T-----GGTTCTTGAGAACAAGATTTTTGA----AAT--ATCAGAATT---T---TAc
gi|4 : AACAAA-CATGAGAGCAACTGATTAGGTGATACTAAATGCAAAAT-ATCA-----------AGGCCTTGCACTTTTGGAGAA---GATT--TTTGATACTTTGAAAAAAatgaaaattttctaggttaaaatgataatggccatgaacaaacatgagagcaactgattaggtgatactaaatgcaaaatatcaaggccttgcacttttggagaagatttttgatactttgaaaaaa
gi|5 : ccaaacagatgaatgaatttggctcataagatttttgatatttaacagttttacccttttttggcttctgctgtccccttactctaaatcctctttaaaggactaagtctcaactgttatgtctaaataatgcttcagacattaataagattagaattataccaaacacagacgagaaaaacataatttcccattttattcatacatgtacataaaatcaaatccatcttacctagcctcaatgtattctagtccatgactttttttaaaaaaacttgaaacctctactcataccaaatttgtctggctggttcttgagaacaagatttttgaaatatcagaattttaatgaaaattttctaggttaaaatgataatggccatgCAGGCAAAAT-ATCA----AGCT-CCAGGCCTTGCACTTTCTGAGAAAAAGATT--TTTGAAATTT--AAAAAAAA--ATATACTGATAAACCCCT-GATG-TGGGTCCAAATTTGACCCC-AGGGTCATCATTTGAACAAACTTCAGAGAGCTTTATGTAAGAAAGTTTCACAC-GAATTTGGTGAAAATCTGTCAAGTGGTTTCAGAGAAGAAGTCATTTGAAGCAGAAGTTA-AT-TACG-G----ACG--------------GATGACAGATGACGG-------A---CTAAGGTAGATCACAATAGCTCATC-CTGAGCT--TTG-CTC-AGATGAGC-TA
gi|6 : ATATGCAAAAT-ATTAAAGCG----CCAGGCTTT------TTGAAAAA---GATT--TTTGGAATTTT--AGAAAAATGAAA-A-TGATAAGCCCCT-GAGGACGAG-CCAAATTTGACCCATAGTGCCATGATATGAACAAGCTTCAGAGAGCTTCGTGTAAGAATACTTCAAAACATATTTAGTGAAAACCTGTCAAGTGGTATCAGAGAAGAAGTGGTTTGAAGCAAAAGTTA-AC-AACG-T----ACG--------------GA----------CGA-------A---C-------AA
gi|7 : --T---TTTT---GA-------AA-T----TCA-AACTA---T---AATCATTTTTTGGG-CCCCTGCTGGCCT----------------------TTT-AA-G-G-AC----------------TG-TCATTACTT-----ACCAATACACCTGGC-AT--CAA----------------GATGA------AATAATACTC-AA--A----ATAGATGACAAAA-AC-AAAATGTCCTGTTTTTCCTTAAT----GTTTTT--ATTTA---AAA------ATCT-------AAGTctaatacagggtaattcacaaaagct
gi|8 : aataatggctcatcagatttttttttttTTAAATCCCTTA--CTCAT--GG--ATCA---TTT-----ATACCAAATA--T----GCACAAA-TCT-GAGTCATCAGTTATTAAAAA---GA--T---TTTT---GA-------AA-C----TCA-CAA------------------TTGAA-TTCCT--------CTAAA-G-TTATTGAATGCC-CTTTAAA-G-A-ACCTA-TTTTC----AACTGCTTTTGACTA-----AAC
gi|9 : actac----ATTGATGAGAAAACAA-ATA-TTATCTGTTTACAATTAGC----AGTCCT--A-------AAA------ACCA-------ATGTTC-CTCTT-------TCCAACGATTGAATTATAAACT----C-ATTATTTGAAC-AAA--CT--AATAACCGTTGT----GCACATGGATC---ATGGA----ACACCAAACATGGACACATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAAGTATTATAAAGTATGCAAAAAACCAAAGAGGAGATTTGTTATA