lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 6666666 11 333333333333333333 2222222222222 111 44444444444444444444 1111 111111111111111111111111111111111111111111111111111111111 111 11111111111
lowQualScore : 6 44 1 1 1111111 77 22 0 5 444444444444444444 7777 3333333333333 44 3 444 3 55 3 77777777777777777777 44 1 44 3 1111 777777777777777777777777777777777777777777777777777777777 4 1 77 333 4 666 55555555555
lowQualScore : . .. . . ....... .. .. . . .................. .... ............. .. . ... . .. . .................... .. . .. . .... ......................................................... . . .. ... . ... ...........
lowQualScore : 0 22 2 4 6666666 00 00 4 0 999999999999999999 1111 2222222222222 66 3 333 3 33 3 22222222222222222222 66 4 77 3 7777 222222222222222222222222222222222222222222222222222222222 0 6 00 444 8 111 77777777777
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAAT-GTTTGGAAA--GCCGCGTTTGAGCACGC----TGATTGGTCAGTTGCTTC------AG-C-TG--AAA-GTTTG-A-TGA-CGTCACAGTT-T-G-AAG----C----G----TTC--AAT-TGCTATGAATTGTGGGACAGG-CATA----GAAT----------TCC-TTG-C-------T--------------TT--------------AAT-AGAC-CTGA-TTCGGGAGATATCAGGT----TC---T-GGGATAGACTA
Reference ( gi|3 ) : TTAGTTTACAGAACGAACCCAGCTTTCCCGGGCCGATTGAATCCACTAAATAGCAAT-GTTGGGAAA--GCCATTTTTGAGCACGT----TGATTGGTCAGTTGCTTT------AA-C-TG--AAA-GTTTG-A-TGA-CGTCATAGTT-T----AG----C----G----TTC--AGT-TGCTATGAATTGTGGGACAGG-CATA----GAAT----------TTC-TTG-C-------T--------------TT--------------AAT-AGAC-TTGA-TGCGGGAGATATCAGGT----TT---T-GGGATAGACTA
gi|2 : TTAGTCTGAAGTAGGGACCAAGCTCTCCTG-----ATTGGGTCCGTTAAA-------------GAAA--GCTGCGTTTGTACACGC----TGATTGGTCAGTTGCTTC------AG-C-TG--AAA-GTTTGAA-TGA-CCTCAGAGTT-TAGTAAG----C----G----TTC--AAT-TGCTATGAGTTATGGTACAGG-CGTA----CACT----------TCC-CTG-C-------TGTTTCATTGGGGG-CT--------------AAT-ATAT-CTGACTAC-GGAGATATCAGAT----TT---T-GGGATAGACT
gi|4 : ccAGTCTGTAGGACTAACCCAG--TTCCC---CCAATTTGATCCGTTAAAAAGCAAT-GTTTGGAAA--GCCGCATTTGAGAACGT----TGATTGGTCACTTGCTTT------AA-C-TG--AAA-GTTTGAA-TAA-CGCCACAGTT-TAATAAG----C----G----TTC--AAT-TGCTATGAATTGTGAGATAGG-CAGA----GAAC----------TCC-TTG-A-------T--------------TT--------------TTC-A----TTGA-TTCTGGAGATGTCAGAT----TC---T-AGGATAGATTA
gi|16 : AGTCTGTAGATCGAACCTAGCTCTCCCG-----ATTGGGTCCGTTCAGTAGCAAT-a
gi|5 : GTCTGTAGAATGGACCCAGCCCT-----ACCGATTGGGTCCGTAAAATAGCAAT-GTTGGGAAA----CATTT--GAGCAAGC----TGATTGGTCATTTGTTTC------AAAT-TG--AAA-GTTT--A-TGA-CGTCCCAGTT-C----AG----T----AAGTATTC--AAC-TGCTATGAATTGTGGGGCAGG-CATA----CAAT----------TCC-CTG-CG------TTTTTATTAGTGG--TT--------------AAT-AGAC-CTGA-ATCGGGAGA-------T----TC---T-GGGATAGAtcatacaagctaattagcttttttctaaat
gi|12 : ACGGACCTAGCTTTCCAG-----ATTGGGTCCGTTAAATAGCAAT-GTTTGGAAAGTGTCATTTT--AGCACGT----TTATTGGTCAGTTGCTTC------AA-C-TG--AAA-GTTTG-A-TGA-CGTCACAATT-TAGTAAG----C----G----TTC--AAT-TGCTATGAATTGTGGAGCAGG-CATA----TAAT----------TCC-CTG-
gi|1 : gtgttgtCCGATTGGATCCGTTCAATATCAATTGT------A--AC-------GAGCACGC----CGATTGGTCAATTGTTTC------AG----G--AAAAGTTTG-AATGA-TGTCACAGTT-T----AG----TTAGTA----TTC--AAT-TGCTATGAATTGTGGGACAGG-CATA----GAAA----------TCC-ATG-C-------TTTTTTCATTAGTGGTT--------------AAT-AGAC-CTGA-TTCGAGAGATACCAGGT----TC---TGGGGATAGACTA
gi|6 : TAAATAGCAAT-GTTTGGAAA--GCCACATATGAGCACGT----TGATTGGTCACTTGTTTT------AA-C-TG--AAC-GTTTGAA-TGA-CGTCACGGTT-T----AGTAATC----G----TTT--GAC-TGCTATGATTTGCGGGACAGG-CATA----GAAT----------ACT-TTG-C-------T--------------Tagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|18 : tagtctgtagaacgatgtgtcagtATAGCAAT-GC---GA----------TTAGAGCACGT----TGATTGGTCAGTGGCTTgttcattgggggttaatagacaaaatatatagataattgtatattgttatat
gi|7 : gctctcccgcTTTGAGCACGC----TGATTGGTCTGTTGCTTC------AG---TG--AAA-GTTGA-A-TGA-CATCAACGTT-TGGAAAG----G----G----TTA--ACC-AGCTATGAATTGTGGGACAGA-CATAAT--GAATAAATAA----TTT-TT--C-------A--------------TTGA------------AAC-ATACCTTAA-TA-AAGAGATATCA--------------GAGATGGACTAc
gi|8 : attatagaacggatccagctctgcagcaatgagaTGAGAACGTGCGCTGATTGGTCAGGTACCTC------AG-C-----AAA-CTTTG-AATGA-CGTCACAGTT-TGGTAAG----C----G----TTATGAGT-T-CTATTACTTGCGGAACAGGGCATA----GAATGCTCTGCTTTTTCATTGAC-------A--------------TT--------------GATCAGAC-CTGA-TTCATGAGAGATC---T----TTGACT-GGGATAAACagttgttatatg
gi|13 : tgatctagctctcctcgcttaggtccgcaGAGCACGC----TGATTGGTTAGTTGCTTC------AG---GG--GAA-GTTGA-A-TCA-CGTCATTTTTAT----AG----C----A----CTC--TAT---CTATCAAT
gi|11 : agaaatggttcaagttctccccgttaggggccgttacatatcagtggaatacAGCACGC----TGATTGGTCAGTTGCTTG------AA-G--G--AAA-ATCTG-AATGA-TGTTAAAG--------------------------C--AGT-TGCTATGCATTGTTTGACAGC-TTTA----GAAT----------CT--TTG-CT------T--------------TT--------------AAT-AAAC-CTGA-TTCGGGAGATAACGGGTTCTATT---T----ATAGACT
gi|14 : gtcagtagaacgggtccagctctcccgattgttactGCACGT----TGATTAGTCAGTTGCTT
gi|10 : gGATTGCTTTGTTGCTTTCGTTGAAA-CATGCCAAA-GATTG-A-TAAACG-CAT-----C----AG-------------------AGT--GCT-TGAATTGTGGGACAGT-CAGC----GAATCCAATG----CTT-TTG-CATAAGAGT--------------AT--------------AAC-AGAC-CCGA-ATCGGAATATTTCGGGT----aagaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|9 : ctagctctccttatttgggtccgttataaagcagtgacagacaagcAGCTGCTTC------GG-G-GG--AAA-GTTTG-AATGA-CGTCATAGTT-T----AG---------------TA--AGCGTACTATAAATTGTGGGACAGG-CAAA----GAAT----------TCC-CTG-C-------T--------------TTTTCATTGGTGGGTTAAT-AGAC-CTGA-TTCCGGAGATATCAGAT----TC---G-GGGATAGACTAac
gi|14 : ttgtagaacggacccagctgtccccattagcagcacaattaagcaGCTATGTATTGTATGACAGG-CATGGGTTGACC----------TGC-TTG-T-------TTATTAGGGG-----TT--------------AAT-AGAC-CAGA-TTCAGGAGACGTCA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TAGAAATGGTCCAAATACTCCCTGCTAGGGACGGTTTCATAGAGCCGACTTACGAGAACGCTGACCGGTCAGTAGCTTCAGTGGA
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 3333333333 3333333333333333333 111 1 444444 1111 1111111111111111111111111111111111111111111
lowQualScore : 0 6666666666 3 9999999999999999999 2 444 3 6 5 3 555555 3 33 2 3 0000 888888 0 44 3 8888888888888888888888888888888888888888888 3 1 222 777 4 4
lowQualScore : . .......... . ................... . ... . . . . ...... . .. . . .... ...... . .. . ........................................... . . ... ... . .
lowQualScore : 7 6666666666 4 6666666666666666666 7 666 1 2 4 3 777777 1 99 9 1 8888 888888 8 22 3 6666666666666666666666666666666666666666666 6 2 777 888 4 4
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCC-CG--CCGATTGGGTCCGTTAAATAGCAATGTT-GGAAAGCCGCGTT-T-GAGCACGCTGATTGGTCAGTTGCTTCA-G-CTGAAA-GTTTG-AATGACGTCACAGTTTAGTA--AGCGT-TC--A-ATTGCTATGAATTGTGGGACAGG-CATA----GAAT------TCCCTG--C-T--------------T-------------T--------------AAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
Reference ( family-63 ) : TTAGTCTGTAGAACGGACCCAGCTCTCC-CG--CCGATTGGGTCCGTTAAATAGCAATGTTTGGAAAGCCGCGTT-T-GAGCACGCTGATTGGTCAGTTGCTTCA-G-CTGAAA-GTTTG-A-TGACGTCACAGTTTG--A--AGCGT-TC--A-ATTGCTATGAATTGTGGGACAGG-CATA----GAAT------TCCTTG--C-T--------------T-------------T--------------AAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
gi|1 : --CCGATTGGATCCGTTCAATATCAAT---TGTAA----------C-GAGCACGCCGATTGGTCAATTGTTTCA-G---GAAAAGTTTG-AATGATGTCACAGTTTA--GTTAGTAT-TC--A-ATTGCTATGAATTGTGGGACAGG-CATA----GAAA------TCCATG--C-TTTTTTCATTAGTGGT-------------T--------------AAT-AGACCTGATTCGAGAGATACCAGGTT---CTGG-GGATAGACTA
gi|10 : CTAGCTCTCC-T----TATTTGGGTCCGTTATAAAGCAGTG-----ACAGACA--------AGC-----GATTGCTTTGTTGCTTTC-G-TTGAAA-C---------ATGCCAAAGATTG--ATAAACGCATC--AGAGTGCT-TGAATTGTGGGACAGT-CAGC----GAAT------CCAATG--C-T--------------TTTGCATAAGAGTAT--------------AAC-AGACCCGAATCGGAATATTTCGGGTagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|11 : GTCAGTAGAACGGGTCCAGCTCTC------CCGATTGac
gi|11 : AGCACGCTGATTGGTCAGTTGCTTGAAG---GAAA-ATCTG-AATGATGTTA---------A--AGC-------A-GTTGCTATGCATTGTTTGACAGC-TTTA----GAAT-------CTTTG--C-T--------------T-------------TT-------------AAT-AAACCTGATTCGGGAGATAACGGGTT---CT-ATTTATAGACTttactagcacgctgattggtcagttgcttgaaggaaaatctgaatgatgttaaagcagttgctatgcattgtttgacagctttagaatctttgcttttaataaacctgattcgggagataacgggttctatttatagact
gi|12 : gtcagtagaacgggtccagctctcccgattgttactTGTTGTACGGACCTAGCTTTCC-AG-----ATTGGGTCCGTTAAATAGCAATGTTTGGAAAGTGTCATT-T-TAGCACGTTTATTGGTCAGTTGCTTCA-A-CTGAAA-GTTTG-A-TGACGTCACAATTTAGTA--AGCGT-TC--A-ATTGCTATGAATTGTGGAGCAGG-CATA----TAAT------TCCCTG--
gi|13 : gAATGGTTCAAGTTCTCC-C----CGTTAGGGGCCGTTACATATCAGTG----GAATAC---------GAGCACGCTGATTGGTTAGTTGCTTCA-G--GGGAA-GTTGA-A-TCACGTCAT--TTTT--AT-AGCAC-TC--T-AT--CTATCAAT
gi|14 : agaGCACGTTGATTAGTCAGTTGCTTAA-G-
gi|14 : g--A-ATAGCTATGTATTGTATGACAGG-CATGGGTTGACC------TGCTTG--T-TTATTAGGGG-----T-------------T--------------AAT-AGACCAGATTCAGGAGACGTCAaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|15 : ggcacgttgattagtcagttgcttaagAGAGCCGACTTAC-GAGAACGCTGACCGGTCAGTAGCTTCA-G-atatatacagactt
gi|16 : tagaaatggtccaaatactccctgctagggacggtttcatAGTCTGTAGATCGAACCTAGCTCTC------CCGATTGGGTCCGTTCAGTAGCAATtgga
gi|18 : GCGAT-TAGAGCACGTTGATTGGTCAGTGGCTTCtcatacaagctaattagcttttttctaaat
gi|2 : gctctcccgcatagcaatTTAGTCTGAAGTAGGGACCAAGCTCTCC-TG-----ATTGGGTCCGTTAAA------------GAAAGCTGCGTT-T-GTACACGCTGATTGGTCAGTTGCTTCA-G-CTGAAA-GTTTG-AATGACCTCAGAGTTTAGTA--AGCGT-TC--A-ATTGCTATGAGTTATGGTACAGG-CGTA----CACT------TCCCTG--C-TGTTTCATTGGGGG-C-------------T--------------AAT-ATATCTGACTACGGAGATATCAGATT---TT-G-GGATAGACT
gi|3 : ccTTAGTTTACAGAACGAACCCAGCTTTCC-CGGGCCGATTGAATCCACTAAATAGCAATGTTGGGAAAGCCATTTT-T-GAGCACGTTGATTGGTCAGTTGCTTTA-A-CTGAAA-GTTTG-A-TGACGTCATAGTTT------AGCGT-TC--A-GTTGCTATGAATTGTGGGACAGG-CATA----GAAT------TTCTTG--C-T--------------T-------------T--------------AAT-AGACTTGATGCGGGAGATATCAGGTT---TT-G-GGATAGACTA
gi|4 : AGTCTGTAGGACTAACCCAGTTCCCC-CA-----ATTTGATCCGTTAAAAAGCAATGTTTGGAAAGCCGCATT-T-GAGAACGTTGATTGGTCACTTGCTTTA-A-CTGAAA-GTTTGAA-TAACGCCACAGTTTAATA--AGCGT-TC--A-ATTGCTATGAATTGTGAGATAGG-CAGA----GAAC------TCCTTGATT-T--------------T-------------T--------------CAT------TGATTCTGGAGATGTCAGATT---CT-A-GGATAGATTA
gi|5 : GTCTGTAGAATGGACCCAGC---CC-TA--CCGATTGGGTCCGTAAAATAGCAATGTTGGGAAA----CATT-T-GAGCAAGCTGATTGGTCATTTGTTTCA-AATTGAAA-GTTT--A-TGACGTCCCAGTTCAGTA--AGTAT-TC--A-ACTGCTATGAATTGTGGGGCAGG-CATA----CAAT------TCCCTG--CGTTTTTATTAGTGG--T-------------T--------------AAT-AGACCTGAATCGGGAGA-------TT---CT-G-GGATAGAa
gi|6 : TAGTCTGTAGAACGA----------------------TGTGTCAGTTAAATAGCAATGTTTGGAAAGCCACATA-T-GAGCACGTTGATTGGTCACTTGTTTTA-A-CTGAAC-GTTTGAA-TGACGTCACGGTTTAGTA--ATCGT-TT--G-ACTGCTATGATTTGCGGGACAGG-CATA----GAAT------ACTTTG--C-T--------------T-------------
gi|7 : TATAGAACGGATCCAGCTCT----G--C------------------AGCAATG-------AG----ATT-T-GAGCACGCTGATTGGTCTGTTGCTTCA-G--TGAAA-GTTGA-A-TGACATCAACGTTTGGAA--AGGGT-TA--A-CCAGCTATGAATTGTGGGACAGA-CATAAT--GAATAAATAATTTTT---C-A--------------T-------------TGA------------AAC-ATACCTTAATAAAGAGATATCA----------G-AGATGGACTAgttcattgggggttaatagacaaaatatatagataattgtatattgttatat
gi|8 : atGATCTAGCTCTCCTCG--C---TTAGGTCCGC---------ATG---AGAA---CGTG----------CGCTGATTGGTCAGGTACCTCA-G-C--AAA-CTTTG-AATGACGTCACAGTTTGGTA--AGCGT-TATGA-GTT-CTATTACTTGCGGAACAGGGCATA----GAAT------GCTCTG--C-T--------------T-------------TTTCATTGACATT--GATCAGACCTGATTCATGAGAGATC---TTTGACT-G-GGATAAACagttgttatatg
gi|9 : tTGTAGAACGGACCCAGCTGTCC-C
gi|9 : tAGCTGCTTCG-G-GGGAAA-GTTTG-AATGACGTCATAGTTTAGTA--AGCGT----------ACTATAAATTGTGGGACAGG-CAAA----GAAT------TCCCTG--C-T--------------T-------------TTTCATTGGTGGGTTAAT-AGACCTGATTCCGGAGATATCAGATT---CG-G-GGATAGACTAcattagcagcacaattaagcaagctgcttcgggggaaagtttgaatgacgtcatagtttagtaagcgtactataaattgtgggacaggcaaagaattccctgctttttcattggtgggttaatagacctgattccggagatatcagattcggggatagacta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 3333333333 66666666666666666666 111 2222222222222222222222222222
lowQualScore : 0 6666666666 2 1 44444444444444444444 2 444 3 0 3 0 3 3 3 2 3 44 888888 44 6 0000000000000000000000000000 55 3 1 222 777 4 4
lowQualScore : . .......... . . .................... . ... . . . . . . . . . .. ...... .. . ............................ .. . . ... ... . .
lowQualScore : 7 6666666666 2 6 22222222222222222222 5 666 1 4 3 1 1 1 1 9 1 22 888888 22 7 6666666666666666666666666666 00 6 2 777 888 4 4
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCC-CG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATT-TGAGCACGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAT------TCCCTG--C-TTTTT--TTG--G--T-------------T--AAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
Reference ( family-63 ) : TTAGTCTGTAGAACGGACCCAGCTCTCC-CG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCGTT-TGAGCACGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAT------TCCCTG--C-T--------------T-------------T--AAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
gi|1 : --CCGATTGGATCCGTTCAATATCAAT--T-GT-A-A----------CGAGCACGCCGATTGGTCAATTGTTT-CAG---GAAAAGTTTGAATGATGTCACAGTTTAGTT-AGTAT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAA------TCCATG--C-TTTTTTCATTAGTGGT-------------T--AAT-AGACCTGATTCGAGAGATACCAGGTT---CTGG-GGATAGACTA
gi|10 : CTAGCTCTCC-T----TATTTGGGTCCGTTATAAAGCAGTGAC-AG-ACAAGC-----------------GATTGCTTTGTTGCTT-TCG-TTGAAA-C--------ATGCCAAAGATTGATA-AACGCAT-CAGAGTGCT-TGAATTGTGGGACA-GTCAGC--GAAT------CCAATG--C-T--------------TTTGCATAAGAGTAT--AAC-AGACCCGAATCGGAATATTTCGGGTagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|11 : GTCAGTAGAACGGGTCCAGCTCTC------CCGATT------GTT-ACTAGCA---------------CGC-------------TGATTGGTCAGTTGCTTGAAG---GAAA-ATCTGAATGATGTTA---------A-AG------CA-GTTGCTATGCATTGTTTGACA-GCTTTA--GAA-------TCTTTG--CTT--------------T-------------T--AAT-AAACCTGATTCGGGAGATAACGGGTT---CT-ATTTATAGACTac
gi|12 : TGTTGTACGGACCTAGCTTTCC-AG-----ATTGGGTCCGTTAAATAGCAATGTTTGG-A-AAGTGTCATT-TTAGCACGTTTATTGGTCAGTTGCTT-CAA-CTGAAA-GTTTGA-TGACGTCACAATTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGAGCA-GGCATA--TAAT------TCCCTG--
gi|13 : gAATGGTTCAAGTTCTCC-C----CGTTAGGGGCCGTTACATATCAGTG----G-A-ATAC--------GAGCACGCTGATTGGTTAGTTGCTT-CAG--GGGAA-G-TTGAATCACGTCAT--TTT--TATAGCAC-T-CT-AT--CTATCAAT
gi|14 : agaGCACGTTGATTAGTCAGTTGCTT-AAG-
gi|14 : gA-ATAGCTATGTATTGTATGACA-GGCATG--GGTT------GACCTG--C-TTGTTTATTAGGGG-T-------------T--AAT-AGACCAGATTCAGGAGACGTCAaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|15 : ggcacgttgattagtcagttgcttaag-A-GAGCCGACTTACGAGAACGCTGACCGGTCAGTAGCTT-CAG-atatatacagactt
gi|16 : tagaaatggtccaaatactccctgctagggacggtttcatAGTCTGTAGATCGAACCTAGCTCTC------CCGATTGGGTCCGTTCAGTAGCAATtgga
gi|18 : ATAGCAATG------------CG-ATT-AGAGCACGTTGATTGGTCAGTGGCTT-Ctcatacaagctaattagcttttttctaaat
gi|2 : gctctcccgcTTAGTCTGAAGTAGGGACCAAGCTCTCC-TG-----ATTGGGTCCGTTAAA------------G-A-AAGCTGCGTT-TGTACACGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACCTCAGAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAGTTATGGTACA-GGCGTA--CACT------TCCCTG--C-TGTTTCATTGGGGG-C-------------T--AAT-ATATCTGACTACGGAGATATCAGATT---TT-G-GGATAGACT
gi|3 : ccTTAGTTTACAGAACGAACCCAGCTTTCC-CGGGCCGATTGAATCCACTAAATAGCAATGTT-GGGA-AAGCCATTTT-TGAGCACGTTGATTGGTCAGTTGCTT-TAA-CTGAAA-GTTTGA-TGACGTCATAGTTTAG-----CGT-T-CA-GTTGCTATGAATTGTGGGACA-GGCATA--GAAT------TTCTTG--C-T--------------T-------------T--AAT-AGACTTGATGCGGGAGATATCAGGTT---TT-G-GGATAGACTA
gi|4 : AGTCTGTAGGACTAACCCAGTTCCCC-CA-----ATTTGATCCGTTAAAAAGCAATGTTTGG-A-AAGCCGCATT-TGAGAACGTTGATTGGTCACTTGCTT-TAA-CTGAAA-GTTTGAATAACGCCACAGTTTAATA-AGCGT-T-CA-ATTGCTATGAATTGTGAGATA-GGCAGA--GAAC------TCCTTGATT-T--------------T-------------T--CAT------TGATTCTGGAGATGTCAGATT---CT-A-GGATAGATTA
gi|5 : GTCTGTAGAATGGACCCAGC---CC-TA--CCGATTGGGTCCGTAAAATAGCAATGTT-GG-G-AAAC---ATT-TGAGCAAGCTGATTGGTCATTTGTTT-CAAATTGAAA-GTTT--ATGACGTCCCAGTTCAGTA-AGTAT-T-CA-ACTGCTATGAATTGTGGGGCA-GGCATA--CAAT------TCCCTG--CGTTTTTATTAGTGG--T-------------T--AAT-AGACCTGAATCGGGAGA-------TT---CT-G-GGATAGAa
gi|6 : TAGTCTGTAGAACGA----------------------TGTGTCAGTTAAATAGCAATGTTTGG-A-AAGCCACATA-TGAGCACGTTGATTGGTCACTTGTTT-TAA-CTGAAC-GTTTGAATGACGTCACGGTTTAGTA-ATCGT-T-TG-ACTGCTATGATTTGCGGGACA-GGCATA--GAAT------ACTTTG--C-T--------------T-------------
gi|7 : TATAGAACGGATCCAGCTCT----G--C------------------AGCAATG---------AG----ATT-TGAGCACGCTGATTGGTCTGTTGCTT-CAG--TGAAA-GTT-GAATGACATCAACGTTTGGAA-AGGGT-T-AA-CCAGCTATGAATTGTGGGACA-GACATAATGAATAAATAATTTTT---C-A--------------T-------------TGAAAC-ATACCTTAATAAAGAGATATCA----------G-AGATGGACTAgttcattgggggttaatagacaaaatatatagataattgtatattgttatat
gi|8 : atGATCTAGCTCTCCTCG--C---TTAGGTCCGC---------ATG---AG-A-A---CGTG---------CGCTGATTGGTCAGGTACCT-CAG-C--AAA-CTTTGAATGACGTCACAGTTTGGTA-AGCGT-TATG-AGTTCTATTACTTGCGGAACAGGGCATA--GAAT------GCTCTG--C-TTTTTCATTGACA--T-------------T--GATCAGACCTGATTCATGAGAGATC---TTTGACT-G-GGATAAACagttgttatatg
gi|9 : tTGTAGAACGGACCCAGCTGTCC-C
gi|9 : tAGCTGCTT-CGG-GGGAAA-GTTTGAATGACGTCATAGTTTAGTA-AGCG---------TACTATAAATTGTGGGACA-GGCAAA--GAAT------TCCCTG--C-TTTTTCATTGGTGGGT-------------T--AAT-AGACCTGATTCCGGAGATATCAGATT---CG-G-GGATAGACTAcattagcagcacaattaagcaagctgcttcgggggaaagtttgaatgacgtcatagtttagtaagcgtactataaattgtgggacaggcaaagaattccctgctttttcattggtgggttaatagacctgattccggagatatcagattcggggatagacta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT
Alignments
lowQualScore : 444444444 555555555555555555555 111 777777777777777777777777
lowQualScore : 0 111111111 2 444444444444444444444 33 2 444 3 0 3 0 3 3 3 2 3 44 1 0 3 444444444444444444444444 3 1 222 777 4 4
lowQualScore : . ......... . ..................... .. . ... . . . . . . . . . .. . . . ........................ . . ... ... . .
lowQualScore : 2 999999999 2 000000000000000000000 44 5 666 1 4 3 1 1 1 1 9 1 22 7 7 3 000000000000000000000000 3 2 777 888 4 4
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGCTT-TT---TCAT------T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
Reference ( family-63 ) : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGCTT-TT---T--T------T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
gi|1 : --CCGATTGGATCCGTTCAATATCAAT--T-GT-A-A---------C--GAGCA--CGCCGATTGGTCAATTGTTT-CAG---GAAAAGTTTGAATGATGTCACAGTTTAGTT-AGTAT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAATCCATGCTT-TT---T--TCATTAGT----G--GT-TAAT-AGACCTGATTCGAGAGATACCAGGTT---CTGG-GGATAGACTA
gi|10 : CTAGCTCTCCT----TATTTGGGTCCGTTATAAAGCAGTGAC-AG-ACAAGC--------------------GATTGCTTTGTTGCTT-TCG-TTGAAA-C--------ATGCCAAAGATTGATA-AACGCAT-CAGAGTGCT-TGAATTGTGGGACA-GTCAGC--GAATCCAATGCTT-TTGCAT--A------A----GA-GTATAAC-AGACCCGAATCGGAATATTTCGGGTagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|11 : GTCAGTAGAACGGGTCCAGCTCTC-----CCGATT------GTT-ACTAGCA---------------CGC----------------TGATTGGTCAGTTGCTTGAAG---GAAA-ATCTGAATGATGTTA---------A-AG------CA-GTTGCTATGCATTGTTTGACA-GCTTTA--GAA-TCTTTGCTT-------------------------T-TAAT-AAACCTGATTCGGGAGATAACGGGTT---CT-ATTTATAGACTac
gi|12 : TGTTGTACGGACCTAGCTTTCCAG-----ATTGGGTCCGTTAAATAGCAATGTTTGG-A-AAGTGTCATTT--TAGCA--CGTTTATTGGTCAGTTGCTT-CAA-CTGAAA-GTTTGA-TGACGTCACAATTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGAGCA-GGCATA--TAATTCCCTG
gi|13 : gAATGGTTCAAGTTCTCCC----CGTTAGGGGCCGTTACATATCAGTG----G-A-ATAC---------GAGCA--CGCTGATTGGTTAGTTGCTT-CAG--GGGAA-G-TTGAATCACGTCAT--TTT--TATAGCAC-T-CT-AT--CTATCAAT
gi|14 : agaGCA--CGTTGATTAGTCAGTTGCTT-AAG-
gi|14 : gA-ATAGCTATGTATTGTATGACA-GGCATG--GGTTGACCTGCTTGTT---TA-T------TAGG-G--GT-TAAT-AGACCAGATTCAGGAGACGTCAaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|15 : ggcacgttgattagtcagttgcttaag-A-GAGCCG-ACTTACGAGAA--CGCTGACCGGTCAGTAGCTT-CAG-atatatacagactt
gi|16 : tagaaatggtccaaatactccctgctagggacggtttcatAGTCTGTAGATCGAACCTAGCTCTC-----CCGATTGGGTCCGTTCAGTAGCAATtgga
gi|18 : ATAGCAATG------------CG-ATTA--GAGCA--CGTTGATTGGTCAGTGGCTT-Ctcatacaagctaattagcttttttctaaat
gi|2 : gctctcccgcTTAGTCTGAAGTAGGGACCAAGCTCTCCTG-----ATTGGGTCCGTTAAA------------G-A-AAGCTGCGTTT--GTACA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACCTCAGAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAGTTATGGTACA-GGCGTA--CACTTCCCTGCTG-TT---TCAT------TGGG-G--GC-TAAT-ATATCTGACTACGGAGATATCAGATT---TT-G-GGATAGACT
gi|3 : ccTTAGTTTACAGAACGAACCCAGCTTTCCCGGGCCGATTGAATCCACTAAATAGCAATGTT-GGGA-AAGCCATTTTT--GAGCA--CGTTGATTGGTCAGTTGCTT-TAA-CTGAAA-GTTTGA-TGACGTCATAGTTTAG-----CGT-T-CA-GTTGCTATGAATTGTGGGACA-GGCATA--GAATTTCTTGCT--------------------------T-TAAT-AGACTTGATGCGGGAGATATCAGGTT---TT-G-GGATAGACTA
gi|4 : AGTCTGTAGGACTAACCCAGTTCCCCCA-----ATTTGATCCGTTAAAAAGCAATGTTTGG-A-AAGCCGCATTT--GAGAA--CGTTGATTGGTCACTTGCTT-TAA-CTGAAA-GTTTGAATAACGCCACAGTTTAATA-AGCGT-T-CA-ATTGCTATGAATTGTGAGATA-GGCAGA--GAACTCCTTGATT-TT---T--C-------------------AT------TGATTCTGGAGATGTCAGATT---CT-A-GGATAGATTA
gi|5 : GTCTGTAGAATGGACCCAGC---CCTA--CCGATTGGGTCCGTAAAATAGCAATGTT-GG-G-AAAC---ATTT--GAGCA--AGCTGATTGGTCATTTGTTT-CAAATTGAAA-GTTT--ATGACGTCCCAGTTCAGTA-AGTAT-T-CA-ACTGCTATGAATTGTGGGGCA-GGCATA--CAATTCCCTGCGT-TT---T--TATTAG-T----G--GT-TAAT-AGACCTGAATCGGGAGA-------TT---CT-G-GGATAGAa
gi|6 : TAGTCTGTAGAACGA---------------------TGTGTCAGTTAAATAGCAATGTTTGG-A-AAGCCACATAT--GAGCA--CGTTGATTGGTCACTTGTTT-TAA-CTGAAC-GTTTGAATGACGTCACGGTTTAGTA-ATCGT-T-TG-ACTGCTATGATTTGCGGGACA-GGCATA--GAATACTTTGCTT-GT---TCAT------TGGG-G--GT-TAAT-AGAC
gi|7 : TATAGAACGGATCCAGCTCT---G--C------------------AGCAATG---------AG----ATTT--GAGCA--CGCTGATTGGTCTGTTGCTT-CAG--TGAAA-GTT-GAATGACATCAACGTTTGGAA-AGGGT-T-AA-CCAGCTATGAATTGTGGGACA-GACATAATGAA-TAAATAATT-TT---TCAT------T----G--A---AAC-ATACCTTAATAAAGAGATATCA----------G-AGATGGACTAaaaatatatagataattgtatattgttatat
gi|8 : atCCGCATGA--GAACGTGCGCTGATTGGTCAGGTACCT-CAG-C--AAA-CTTTGAATGACGTCACAGTTTGGTA-AGCGT-TATG-AGTTCTATTACTTGCGGAACAGGGCATA--GAATGCTCTGCTT-TT---TCAT------T----GACAT-TGATCAGACCTGATTCATGAGAGATC---TTTGACT-G-GGATAAACagttgttatatg
gi|9 : tgatctagctctcctcgcttaggtTGTAGAACGGACCCAGCTGTCC--------------CCAT----TAGCAG--------------CACAATT--AAGCA--AGCTG------------CTT-CGG-GGGAAA-GTTTGAATGACGTCATAGTTTAGTA-AGCG---------TACTATAAATTGTGGGACA-GGCAAA--GAATTCCCTGCTT-TT---TCAT------TGGTGG--GT-TAAT-AGACCTGATTCCGGAGATATCAGATT---CG-G-GGATAGACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT
Alignments
lowQualScore : 444444444 555555555555555555555 111 44444444444444
lowQualScore : 0 111111111 2 444444444444444444444 33 2 444 3 0 3 0 3 3 3 2 3 44 1 0 3 1 44444444444444 3 1 222 777 4 4
lowQualScore : . ......... . ..................... .. . ... . . . . . . . . . .. . . . . .............. . . ... ... . .
lowQualScore : 2 999999999 2 000000000000000000000 44 5 666 1 4 3 1 1 1 1 9 1 22 6 7 3 1 77777777777777 3 2 777 888 4 4
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
Reference ( family-63 ) : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
gi|1 : --CCGATTGGATCCGTTCAATATCAAT--T-GT-A-A---------C--GAGCA--CGCCGATTGGTCAATTGTTT-CAG---GAAAAGTTTGAATGATGTCACAGTTTAGTT-AGTAT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAATCCATGCTTTTTTCATTAGT----G--GT-TAAT-AGACCTGATTCGAGAGATACCAGGTT---CTGG-GGATAGACTA
gi|10 : CTAGCTCTCCT----TATTTGGGTCCGTTATAAAGCAGTGAC-AG-ACAAGC--------------------GATTGCTTTGTTGCTT-TCG-TTGAAA-C--------ATGCCAAAGATTGATA-AACGCAT-CAGAGTGCT-TGAATTGTGGGACA-GTCAGC--GAATCCAATGC-TTTTGCATAA-G----A--GTATAAC-AGACCCGAATCGGAATATTTCGGGTagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|11 : GTCAGTAGAACGGGTCCAGCTCTC-----CCGATT------GTT-ACTAGCA---------------CGC----------------TGATTGGTCAGTTGCTTGAAG---GAAA-ATCTGAATGATGTTA---------A-AG------CA-GTTGCTATGCATTGTTTGACA-GCTTTA--GAA-TCTTTGC-TT------------------T-TAAT-AAACCTGATTCGGGAGATAACGGGTT---CT-ATTTATAGACTac
gi|12 : TGTTGTACGGACCTAGCTTTCCAG-----ATTGGGTCCGTTAAATAGCAATGTTTGG-A-AAGTGTCATTT--TAGCA--CGTTTATTGGTCAGTTGCTT-CAA-CTGAAA-GTTTGA-TGACGTCACAATTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGAGCA-GGCATA--TAATTCCCTG
gi|13 : gAATGGTTCAAGTTCTCCC----CGTTAGGGGCCGTTACATATCAGTG----G-A-ATAC---------GAGCA--CGCTGATTGGTTAGTTGCTT-CAG--GGGAA-G-TTGAATCACGTCAT--TTT--TATAGCAC-T-CT-AT--CTATCAAT
gi|14 : agaGCA--CGTTGATTAGTCAGTTGCTT-AAG-
gi|14 : gA-ATAGCTATGTATTGTATGACA-GGCATG--GGTTGACCTGC-TTGTTTAT---TAGG-G--GT-TAAT-AGACCAGATTCAGGAGACGTCAaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|15 : ggcacgttgattagtcagttgcttaag-A-GAGCCG-ACTTACGAGAA--CGCTGACCGGTCAGTAGCTT-CAG-atatatacagactt
gi|16 : tagaaatggtccaaatactccctgctagggacggtttcatAGTCTGTAGATCGAACCTAGCTCTC-----CCGATTGGGTCCGTTCAGTAGCAATtgga
gi|18 : ATAGCAATG------------CG-ATTA--GAGCA--CGTTGATTGGTCAGTGGCTT-Ctcatacaagctaattagcttttttctaaat
gi|2 : gctctcccgcTTAGTCTGAAGTAGGGACCAAGCTCTCCTG-----ATTGGGTCCGTTAAA------------G-A-AAGCTGCGTTT--GTACA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACCTCAGAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAGTTATGGTACA-GGCGTA--CACTTCCCTGC-TGTTTCAT---TGGG-G--GC-TAAT-ATATCTGACTACGGAGATATCAGATT---TT-G-GGATAGACT
gi|3 : ccTTAGTTTACAGAACGAACCCAGCTTTCCCGGGCCGATTGAATCCACTAAATAGCAATGTT-GGGA-AAGCCATTTTT--GAGCA--CGTTGATTGGTCAGTTGCTT-TAA-CTGAAA-GTTTGA-TGACGTCATAGTTTAG-----CGT-T-CA-GTTGCTATGAATTGTGGGACA-GGCATA--GAATTTCTTGC-T-------------------T-TAAT-AGACTTGATGCGGGAGATATCAGGTT---TT-G-GGATAGACTA
gi|4 : AGTCTGTAGGACTAACCCAGTTCCCCCA-----ATTTGATCCGTTAAAAAGCAATGTTTGG-A-AAGCCGCATTT--GAGAA--CGTTGATTGGTCACTTGCTT-TAA-CTGAAA-GTTTGAATAACGCCACAGTTTAATA-AGCGT-T-CA-ATTGCTATGAATTGTGAGATA-GGCAGA--GAACTCCTTGA-TTTTTCAT------------------------TGATTCTGGAGATGTCAGATT---CT-A-GGATAGATTA
gi|5 : GTCTGTAGAATGGACCCAGC---CCTA--CCGATTGGGTCCGTAAAATAGCAATGTT-GG-G-AAAC---ATTT--GAGCA--AGCTGATTGGTCATTTGTTT-CAAATTGAAA-GTTT--ATGACGTCCCAGTTCAGTA-AGTAT-T-CA-ACTGCTATGAATTGTGGGGCA-GGCATA--CAATTCCCTGC-GTTTTTATTAGT----G--GT-TAAT-AGACCTGAATCGGGAGA-------TT---CT-G-GGATAGAa
gi|6 : TAGTCTGTAGAACGA---------------------TGTGTCAGTTAAATAGCAATGTTTGG-A-AAGCCACATAT--GAGCA--CGTTGATTGGTCACTTGTTT-TAA-CTGAAC-GTTTGAATGACGTCACGGTTTAGTA-ATCGT-T-TG-ACTGCTATGATTTGCGGGACA-GGCATA--GAATACTTTGC-TTGTTCAT---TGGG-G--GT-TAAT-AGAC
gi|7 : TATAGAACGGATCCAGCTCT---G--C------------------AGCAATG---------AG----ATTT--GAGCA--CGCTGATTGGTCTGTTGCTT-CAG--TGAAA-GTT-GAATGACATCAACGTTTGGAA-AGGGT-T-AA-CCAGCTATGAATTGTGGGACA-GACATAATGAAT-AAATAA-TTTTTCAT---T----G--A---AAC-ATACCTTAATAAAGAGATATCA----------G-AGATGGACTAaaaatatatagataattgtatattgttatat
gi|8 : atCCGCATGA--GAACGTGCGCTGATTGGTCAGGTACCT-CAG-C--AAA-CTTTGAATGACGTCACAGTTTGGTA-AGCGT-TATG-AGTTCTATTACTTGCGGAACAGGGCATA--GAATGCTCTGC-TTTTTCAT---T----GACAT-TGATCAGACCTGATTCATGAGAGATC---TTTGACT-G-GGATAAACagttgttatatg
gi|9 : tgatctagctctcctcgcttaggtTGTAGAACGGACCCAGCTGTCC--------------CCAT----TAGCAG--------------CACAATT--AAGCA--AGCTG------------CTT-CGG-GGGAAA-GTTTGAATGACGTCATAGTTTAGTA-AGCG---------TACTATAAATTGTGGGACA-GGCAAA--GAATTCCCTGC-TTTTTCAT---TGGTGG--GT-TAAT-AGACCTGATTCCGGAGATATCAGATT---CG-G-GGATAGACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT
Alignments
lowQualScore : 444444444 555555555555555555555 111 44444444444444
lowQualScore : 0 111111111 2 444444444444444444444 33 2 444 3 0 3 0 3 3 3 2 3 44 1 0 3 1 44444444444444 3 1 222 777 4 4
lowQualScore : . ......... . ..................... .. . ... . . . . . . . . . .. . . . . .............. . . ... ... . .
lowQualScore : 2 999999999 2 000000000000000000000 44 5 666 1 4 3 1 1 1 1 9 1 22 6 7 3 1 77777777777777 3 2 777 888 4 4
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
Reference ( family-63 ) : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
gi|1 : --CCGATTGGATCCGTTCAATATCAAT--T-GT-A-A---------C--GAGCA--CGCCGATTGGTCAATTGTTT-CAG---GAAAAGTTTGAATGATGTCACAGTTTAGTT-AGTAT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAATCCATGCTTTTTTCATTAGT----G--GT-TAAT-AGACCTGATTCGAGAGATACCAGGTT---CTGG-GGATAGACTA
gi|10 : CTAGCTCTCCT----TATTTGGGTCCGTTATAAAGCAGTGAC-AG-ACAAGC--------------------GATTGCTTTGTTGCTT-TCG-TTGAAA-C--------ATGCCAAAGATTGATA-AACGCAT-CAGAGTGCT-TGAATTGTGGGACA-GTCAGC--GAATCCAATGC-TTTTGCATAA-G----A--GTATAAC-AGACCCGAATCGGAATATTTCGGGTagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|11 : GTCAGTAGAACGGGTCCAGCTCTC-----CCGATT------GTT-ACTAGCA---------------CGC----------------TGATTGGTCAGTTGCTTGAAG---GAAA-ATCTGAATGATGTTA---------A-AG------CA-GTTGCTATGCATTGTTTGACA-GCTTTA--GAA-TCTTTGC-TT------------------T-TAAT-AAACCTGATTCGGGAGATAACGGGTT---CT-ATTTATAGACTac
gi|12 : TGTTGTACGGACCTAGCTTTCCAG-----ATTGGGTCCGTTAAATAGCAATGTTTGG-A-AAGTGTCATTT--TAGCA--CGTTTATTGGTCAGTTGCTT-CAA-CTGAAA-GTTTGA-TGACGTCACAATTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGAGCA-GGCATA--TAATTCCCTG
gi|13 : gAATGGTTCAAGTTCTCCC----CGTTAGGGGCCGTTACATATCAGTG----G-A-ATAC---------GAGCA--CGCTGATTGGTTAGTTGCTT-CAG--GGGAA-G-TTGAATCACGTCAT--TTT--TATAGCAC-T-CT-AT--CTATCAAT
gi|14 : agaGCA--CGTTGATTAGTCAGTTGCTT-AAG-
gi|14 : gA-ATAGCTATGTATTGTATGACA-GGCATG--GGTTGACCTGC-TTGTTTAT---TAGG-G--GT-TAAT-AGACCAGATTCAGGAGACGTCAaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|15 : ggcacgttgattagtcagttgcttaag-A-GAGCCG-ACTTACGAGAA--CGCTGACCGGTCAGTAGCTT-CAG-atatatacagactt
gi|16 : tagaaatggtccaaatactccctgctagggacggtttcatAGTCTGTAGATCGAACCTAGCTCTC-----CCGATTGGGTCCGTTCAGTAGCAATtgga
gi|18 : ATAGCAATG------------CG-ATTA--GAGCA--CGTTGATTGGTCAGTGGCTT-Ctcatacaagctaattagcttttttctaaat
gi|2 : gctctcccgcTTAGTCTGAAGTAGGGACCAAGCTCTCCTG-----ATTGGGTCCGTTAAA------------G-A-AAGCTGCGTTT--GTACA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACCTCAGAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAGTTATGGTACA-GGCGTA--CACTTCCCTGC-TGTTTCAT---TGGG-G--GC-TAAT-ATATCTGACTACGGAGATATCAGATT---TT-G-GGATAGACT
gi|3 : ccTTAGTTTACAGAACGAACCCAGCTTTCCCGGGCCGATTGAATCCACTAAATAGCAATGTT-GGGA-AAGCCATTTTT--GAGCA--CGTTGATTGGTCAGTTGCTT-TAA-CTGAAA-GTTTGA-TGACGTCATAGTTTAG-----CGT-T-CA-GTTGCTATGAATTGTGGGACA-GGCATA--GAATTTCTTGC-T-------------------T-TAAT-AGACTTGATGCGGGAGATATCAGGTT---TT-G-GGATAGACTA
gi|4 : AGTCTGTAGGACTAACCCAGTTCCCCCA-----ATTTGATCCGTTAAAAAGCAATGTTTGG-A-AAGCCGCATTT--GAGAA--CGTTGATTGGTCACTTGCTT-TAA-CTGAAA-GTTTGAATAACGCCACAGTTTAATA-AGCGT-T-CA-ATTGCTATGAATTGTGAGATA-GGCAGA--GAACTCCTTGA-TTTTTCAT------------------------TGATTCTGGAGATGTCAGATT---CT-A-GGATAGATTA
gi|5 : GTCTGTAGAATGGACCCAGC---CCTA--CCGATTGGGTCCGTAAAATAGCAATGTT-GG-G-AAAC---ATTT--GAGCA--AGCTGATTGGTCATTTGTTT-CAAATTGAAA-GTTT--ATGACGTCCCAGTTCAGTA-AGTAT-T-CA-ACTGCTATGAATTGTGGGGCA-GGCATA--CAATTCCCTGC-GTTTTTATTAGT----G--GT-TAAT-AGACCTGAATCGGGAGA-------TT---CT-G-GGATAGAa
gi|6 : TAGTCTGTAGAACGA---------------------TGTGTCAGTTAAATAGCAATGTTTGG-A-AAGCCACATAT--GAGCA--CGTTGATTGGTCACTTGTTT-TAA-CTGAAC-GTTTGAATGACGTCACGGTTTAGTA-ATCGT-T-TG-ACTGCTATGATTTGCGGGACA-GGCATA--GAATACTTTGC-TTGTTCAT---TGGG-G--GT-TAAT-AGAC
gi|7 : TATAGAACGGATCCAGCTCT---G--C------------------AGCAATG---------AG----ATTT--GAGCA--CGCTGATTGGTCTGTTGCTT-CAG--TGAAA-GTT-GAATGACATCAACGTTTGGAA-AGGGT-T-AA-CCAGCTATGAATTGTGGGACA-GACATAATGAAT-AAATAA-TTTTTCAT---T----G--A---AAC-ATACCTTAATAAAGAGATATCA----------G-AGATGGACTAaaaatatatagataattgtatattgttatat
gi|8 : atCCGCATGA--GAACGTGCGCTGATTGGTCAGGTACCT-CAG-C--AAA-CTTTGAATGACGTCACAGTTTGGTA-AGCGT-TATG-AGTTCTATTACTTGCGGAACAGGGCATA--GAATGCTCTGC-TTTTTCAT---T----GACAT-TGATCAGACCTGATTCATGAGAGATC---TTTGACT-G-GGATAAACagttgttatatg
gi|9 : tgatctagctctcctcgcttaggtTGTAGAACGGACCCAGCTGTCC--------------CCAT----TAGCAG--------------CACAATT--AAGCA--AGCTG------------CTT-CGG-GGGAAA-GTTTGAATGACGTCATAGTTTAGTA-AGCG---------TACTATAAATTGTGGGACA-GGCAAA--GAATTCCCTGC-TTTTTCAT---TGGTGG--GT-TAAT-AGACCTGATTCCGGAGATATCAGATT---CG-G-GGATAGACTA
blockSeqs : CCGGGCCGA A TTTGGAAAGTGTCATTT TG G ATT . A T A A G G AT C . T TGGTGGGT C G GGG TGA . T
blockSeqs : CTACCGA A TTGGGAAAGCCATTTTT . . TT . C . . . . . . T . G AAGAGTA . G GGG . . .
blockSeqs : CCCGT A TTTGGAAAGCCGCATTT . . CT . T . . . . . . T . T TAGGGGT . A AGA . . .
blockSeqs : CCGA C TTTGGAAAGCCACATAT . . CT . G . . . . . . G . T TGGGGGC . C AGG . . .
blockSeqs : CAGA A GAAAGCTGCGTTT . . CT . T . . . . . . T . T TAGTGGT . G AGA . . .
blockSeqs : CCGA A TTGGGAAACATTT . . CT . C . . . . . . T . G TGGGGGT . T AGA . . .
blockSeqs : CTGA A ACAGACAAGC . . CT . C . . . . . . T . T TGACAT . G A . . .
blockSeqs : CCAA A CACAATT . . GG . C . . . . . . T . T TGA . A . . . .
blockSeqs : GC A GAATAC . . G . A . . . . . . A . T T . A .
blockSeqs : C . CGATTA . . T . C . . . . . . G . . T . C
blockSeqs : . . AGATTT . . C . T . . . . . . T . . . .
blockSeqs : . CGC . . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : CCGA***** TGGAAAGCCGCATTT****** CT*
originalCons : TTAGTCTGTAGAACGGACCCAGCTCTCCCG--CCGATTGGGTCCGTTAAATAGCAATGTT-GG-A-AAGCCGCATTT--GAGCA--CGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
finalCons : TTAGTCTGTAGAACGGACCCAGCTCTCCCGA-----TTGGGTCCGTTAAATAGCAATGTGGAAAGCCGCATTT------GAGCA--CGCTGATTGGTCAGTTGCTT-CAGCT-GAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT
Alignments
lowQualScore : 7777777777777777777777 111 44444444444444
lowQualScore : 0 99999999 77 3 0 0000000000000000000000 2 444 3 0 3 0 3 3 3 2 3 44 1 0 3 1 44444444444444 3 1 222 777 4 4
lowQualScore : . ........ .. . . ...................... . ... . . . . . . . . . .. . . . . .............. . . ... ... . .
lowQualScore : 7 55555555 66 1 9 1111111111111111111111 5 666 1 4 3 1 1 1 1 9 1 22 6 7 3 1 77777777777777 3 2 777 888 4 4
consensus : TTAGTCTGTAGAACGGACCCAGCTCTCC-CG-----ATT-GGGTCCGTTAAATAGCAATGT--GGAAAGCCGCATTT--GAGCACGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
Reference ( family-63 ) : TTAGTCTGTAGAACGGACCCAGCTCTCC-CG-----ATT-GGGTCCGTTAAATAGCAATGT--GGAAAGCCGCATTT--GAGCACGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACGTCACAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAATTCCCTGC-TTTTTCAT---T----G--GT-TAAT-AGACCTGATTCGGGAGATATCAGGTT---CT-G-GGATAGACTA
gi|1 : C-CG-----ATT-GGATCCGTTCAATATCAAT-T--GTAA---------C--GAGCACGCCGATTGGTCAATTGTTT-CAG---GAAAAGTTTGAATGATGTCACAGTTTAGTT-AGTAT-T-CA-ATTGCTATGAATTGTGGGACA-GGCATA--GAAATCCATGCTTTTTTCATTAGT----G--GT-TAAT-AGACCTGATTCGAGAGATACCAGGTT---CTGG-GGATAGACTA
gi|10 : CTAGCTCTCC-TT-----ATTTGGGTCCGTTATAAAGCAGTG-----------ACA-----GA-CAAGC-GATTGCTTTGTTGCTT-TCG-TTGAAA-C--------ATGCCAAAGATTGATA-AACGCAT-CAGAGTGCT-TGAATTGTGGGACA-GTCAGC--GAATCCAATGC-TTTTGCATAA-G----A--GTATAAC-AGACCCGAATCGGAATATTTCGGGTagcaaaaagcaactgtttagtgagacctgattcggaaagtacgaatataa
gi|11 : GTCAGTAGAACGGGTCCAGCTCTCC-CG-----ATT-------GTT-ACTAGCA-------------CGC--------------TGATTGGTCAGTTGCTTGAAG---GAAA-ATCTGAATGATGTTA---------A-AG------CA-GTTGCTATGCATTGTTTGACA-GCTTTA--GAA-TCTTTGC-TT------------------T-TAAT-AAACCTGATTCGGGAGATAACGGGTT---CT-ATTTATAGACTac
gi|12 : TGTTGTACGGACCTAGCTTTCC-AG-----ATT-GGGTCCGTTAAATAGCAATGTTTGGAAAGTGTCATTT--TAGCACGTTTATTGGTCAGTTGCTT-CAA-CTGAAA-GTTTGA-TGACGTCACAATTTAGTA-AGCGT-T-CA-ATTGCTATGAATTGTGGAGCA-GGCATA--TAATTCCCTG
gi|13 : gAATGGTTCAAGTTCTCC-CC-----GTTAGGGGCCGTTACATATCA--GT--GGAATAC---------GAGCACGCTGATTGGTTAGTTGCTT-CAG--GGGAA-G-TTGAATCACGTCAT--TTT--TATAGCAC-T-CT-AT--CTATCAAT
gi|14 : agaGCACGTTGATTAGTCAGTTGCTT-AAG-
gi|14 : gA-ATAGCTATGTATTGTATGACA-GGCATG--GGTTGACCTGC-TTGTTTAT---TAGG-G--GT-TAAT-AGACCAGATTCAGGAGACGTCAaatagctatgtattgtatgacaggcatgggttgacctgcttgtttattaggggttaatagaccagattcaggagacgtcaatatatacagactt
gi|15 : ggcacgttgattagtcagttgcttaagAGAGCCG-ACTTACGAGAACGCTGACCGGTCAGTAGCTT-CAG-atatatacagactt
gi|16 : tagaaatggtccaaatactccctgctagggacggtttcatAGTCTGTAGATCGAACCTAGCTCTCC-CG-----ATT-GGGTCCGTTCAGTAGCAATtgga
gi|18 : ATAGCAATGC--G---------ATTA--GAGCACGTTGATTGGTCAGTGGCTT-Ctcatacaagctaattagcttttttctaaat
gi|2 : gctctcccgcTTAGTCTGAAGTAGGGACCAAGCTCTCC-TG-----ATT-GGGTCCGTTAAA------------GAAAGCTGCGTTT--GTACACGCTGATTGGTCAGTTGCTT-CAG-CTGAAA-GTTTGAATGACCTCAGAGTTTAGTA-AGCGT-T-CA-ATTGCTATGAGTTATGGTACA-GGCGTA--CACTTCCCTGC-TGTTTCAT---TGGG-G--GC-TAAT-ATATCTGACTACGGAGATATCAGATT---TT-G-GGATAGACT
gi|3 : ccTTAGTTTACAGAACGAACCCAGCTTTCC-CGGGCCGATT-GAATCCACTAAATAGCAATGTTGGGAAAGCCATTTTT--GAGCACGTTGATTGGTCAGTTGCTT-TAA-CTGAAA-GTTTGA-TGACGTCATAGTTTAG-----CGT-T-CA-GTTGCTATGAATTGTGGGACA-GGCATA--GAATTTCTTGC-T-------------------T-TAAT-AGACTTGATGCGGGAGATATCAGGTT---TT-G-GGATAGACTA
gi|4 : AGTCTGTAGGACTAACCCAGTTCCCC-CA-----ATT-TGATCCGTTAAAAAGCAATGTTTGGAAAGCCGCATTT--GAGAACGTTGATTGGTCACTTGCTT-TAA-CTGAAA-GTTTGAATAACGCCACAGTTTAATA-AGCGT-T-CA-ATTGCTATGAATTGTGAGATA-GGCAGA--GAACTCCTTGA-TTTTTCAT------------------------TGATTCTGGAGATGTCAGATT---CT-A-GGATAGATTA
gi|5 : GTCTGTAGAATGGACCCAGCCCTAC-CG-----ATT-GGGTCCGTAAAATAGCAATGTTGGGAAA----CATTT--GAGCAAGCTGATTGGTCATTTGTTT-CAAATTGAAA-GTTT--ATGACGTCCCAGTTCAGTA-AGTAT-T-CA-ACTGCTATGAATTGTGGGGCA-GGCATA--CAATTCCCTGC-GTTTTTATTAGT----G--GT-TAAT-AGACCTGAATCGGGAGA-------TT---CT-G-GGATAGAa
gi|6 : TAGTCTGTAGAACGA----------------------T-GTGTCAGTTAAATAGCAATGTTTGGAAAGCCACATAT--GAGCACGTTGATTGGTCACTTGTTT-TAA-CTGAAC-GTTTGAATGACGTCACGGTTTAGTA-ATCGT-T-TG-ACTGCTATGATTTGCGGGACA-GGCATA--GAATACTTTGC-TTGTTCAT---TGGG-G--GT-TAAT-AGAC
gi|7 : TATAGAACGGATCCAGCTCTGC-------------------------AGCAATG-------AG----ATTT--GAGCACGCTGATTGGTCTGTTGCTT-CAG--TGAAA-GTT-GAATGACATCAACGTTTGGAA-AGGGT-T-AA-CCAGCTATGAATTGTGGGACA-GACATAATGAAT-AAATAA-TTTTTCAT---T----G--A---AAC-ATACCTTAATAAAGAGATATCA----------G-AGATGGACTAaaaatatatagataattgtatattgttatat
gi|8 : atGATCTAGCTCTCCTCG-----CTT-AGGTCCGC---ATGAGAACGT--G--------------------CGCTGATTGGTCAGGTACCT-CAG-C--AAA-CTTTGAATGACGTCACAGTTTGGTA-AGCGT-TATG-AGTTCTATTACTTGCGGAACAGGGCATA--GAATGCTCTGC-TTTTTCAT---T----GACAT-TGATCAGACCTGATTCATGAGAGATC---TTTGACT-G-GGATAAACagttgttatatg
gi|9 : tTGTAGAACGGACCCAGCTGTCC-CC-----ATT--------------AGCAG------------CACAATT--AAGCA------------AGCTGCTT-CGG-GGGAAA-GTTTGAATGACGTCATAGTTTAGTA-AGCGT---------ACTATAAATTGTGGGACA-GGCAAA--GAATTCCCTGC-TTTTTCAT---TGGTGG--GT-TAAT-AGACCTGATTCCGGAGATATCAGATT---CG-G-GGATAGACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGAATAATGGAACAGTCAGGGAATTCAATGCTTCTACATTAGTATATACCACCAGAATCTGGAGACGTCAGGTACT