lowQualScore : 222 222 1 111 11 1 2222222222222 11 111111111111 444
lowQualScore : 777 000 1 888888 5 999 44 66 6 1 0000000000000 6 3 2 2 44 22 3 2 4 3 66 44 11 2 333 333 5555 0 2 2 88 33 2 33 9999 66666 2 66666 2 33 66 33 1 666666 22 2 22 33 2 33 666666666666 777777 555 555 6 2 3
lowQualScore : ... ... . ...... . ... .. .. . . ............. . . . . .. .. . . . . .. .. .. . ... ... .... . . . .. .. . .. .... ..... . ..... . .. .. .. . ...... .. . .. .. . .. ............ ...... ... ... . . .
lowQualScore : 000 222 0 888888 0 555 22 00 7 3 0000000000000 7 0 9 9 22 77 1 1 1 1 11 33 11 1 777 777 3333 1 5 5 44 44 5 44 9999 22222 5 22222 5 44 99 44 1 111111 99 1 99 88 7 77 333333333333 777777 000 000 9 5 9
consensus : NNNTCAACCAAGCCCGTGTGGTTCCGGCTAAG--AATAGAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTA--TCATTTTTTGTCATGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGGTTCC-AGG-GAGC--CAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAA-NTTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AAT--AACC------------TATAA------TGTGTT---GGTACGCCGTAAAACCCTATTCATTC
Reference ( gi|5 ) : TAATCAATTCAGCCCGTGTGGTTCCGGCTAAG--TATAGAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTGCGAATGGGTGTCATGTT-A-ATTTTA--TCGCTTTCTTTCATGTTCACTAT-------------TGTGGTTAAACTACCAACCCCTGTGTGGTTCC-AGG-GAGC--CAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAA-ATTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-ATCG-AAT--AACC------------TATAA------TG---T---GGTATGCCATAAAACTCTATTCATTC
gi|1 : TCAACCAAGCCCGTGCGGTCTCGGCTAAG--AATAGAATCGCTGCCAATCTCTGCA------GTGGGGTAGGTATTCTCCGAATGGGTGTCATGTTTC-ATTTTA--CCATTTTTTGTCATGTTCATTAAA------------TGTGGTTAAATTACCAACCCCTGTGCGGTTCC-AGG-GAGC--CATATGAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATACATGTTGT-AAGAAGCAATAA-TAAGAGTAATACGATAGAATTCACTGAAACTCTGCAGTTCTGCAGGTATCGAGGTACTAGGTTCATTC-TG---CA---TATTCATT----TACTAAT-G--A--TT--TT-T--T-----A-----TCTCTAT-GTT-----AAT-TAG--TTG--T--TTTTGTGCATGTAGC------ATGAACC--TGG-AATCATCCTTCC--TGTTGGC-ATTG-AAT--AACC------------TATAT------TGTATT---GGTATGC
gi|3 : tcatacatagatttcaaattcatatcttgctgaaatagcaaaaaaaaaaatctgtttacaaagaaagggcaaattggtcttgctcaaggacaccacacttagctgtttgggaggattaaattcatgatcctccaatcctgggtttgatgtAGTTTGTGTGGTTCCGGCTAAG--AATAGAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCTGAATGGGTGTCATGTT-C-ATTTTA--TCATTTTTTGTCATGTTCACTAT-------------TGTGGTTAAATTATCAACACCTGTGTGATTCC-AGG-GAGC--CAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGAAAA-ATTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA------TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTTG-AAT--AACC------------TATAA------TGTGTT---GGTACGTCATAtttcattca
gi|2 : attctgtaaagagcatatttctaaatgttcaatttatatagAGTCTGTGTGGTTCCGGCTAAG--AATAGAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTA--TCATTTTTTGTCATGTTCTCTAT-------------TGTGGTTAAATTATCAACCCCTCTGTGGTTCT-AGG-GAGC--CAT--GAGTGATGGCAAGA-ATAAGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGACAA-ACTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCACAGTTCTAGGTTCATTC-TG---AA---TATTCATT----TGTTGAT-G-TAT-TT--TT-T--TT--A-A-----TATGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AAT--AATC------------T---------------------------ATAAAACGCTATTCATTC
gi|18 : taatttgtttcaagattctgtaagcttattttttggcttagacatgattttcttataccattttcacaaatacgtttgcttactacaaAGCCCACTTGGTTCCGGCTAAG--AATAGAATCACTGCCAATCTCTGTA------GAGGGGTAGAAATCCTCCGAATGGGTGTCATGTT-C-ATTTAA--TCATTTTTTTTCATGTTCgttc
gi|8 : tcatctgctagtcaaatctctgtacttttgttttttttgcatttggtttgtatattttattaaattccatgtcaatcagtcaaatgattcttgtttaaGTGTGGTTCCGGCTAAG--AATAGAATCACTGTCGATCTCTGCA------GAGGGGTAGGAAACGTCTGAATGGGTGTCCTGTT-C-ATTTTA--TCATTTTTTGTCATGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTATGGTTCC-AGG-GAGC--CAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAA-ATTTGGTAATACAATAGAATTTGCTGAAACTCTACAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAAA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-ATT--AACA------------TATAA------TGTGTT---GGTACGCCGTAAAACT
gi|9 : GTGGTTCCGGCTAAG--AATAGAATCACTGACGATTTCTGCA------GAGGGGTAGGAATCCTTTGAATGGGTGTCATGTT-C-ATTTTA--TCA-TATTTGTCATGTTCACTAT-------------TGTGGTTAAATCATCAACCCCTGTGTGGTTTC-AGG-GAGCTATAT--GAGTGATGGCAAGA-ATAAGACCATTGTGGCTCATGCATGTCGT-AAGAACCGACAA-TTTGAGTAATACAATAGAATTTGC--------------TCTGCAGGTATCAAGGTTCTAGG-TCATTC-TG---CA---TATTCATT----TGTTGGT-G-TA--TT--TT-TGGTTA-A-A-----TCTGTAT-GTT-----AAT-TTGTTTTGTTT--TTTTGTACATATAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AAT--AACC------------TATAA------TGTGTT---GGTACGCCGTAAAACCCTATTCATT
gi|10 : GTGGTTCCCGCTAAGAATATAGAATCACTCTCGATCTCTGCA------GAGGGGTAGGAATCC---GAACAGGCACCACGTT-CCATTTCA--CCATTTTTTGTCCAGTTCATTAT-------------TGTTGTTAAATTATCAACACCTATGTGGTTCC-AAG-GAAT--CGC--GAGTGATGGCAAAATATAGGATCACTATGGCTCATGC-TATCGTAAAGAAGTGGCAG-TTTGAGAAAT--GTTAGACTGTTTTGAAAC--------TCTGCAGGTATCGAGGTTCTATGTTCATTT-TG---CA---TATTCATT----CGTTAA----TA--TT--TC-T--TT----A-----TCTGTTT-GTC-----AAT-TTG--TTG--T--TTTT-TCCATGTTGA------GTGAACCAGTAGTAATCTTCCTTCA--TGTTGGC-GTCG-AAT--AACCT-----------TTTAA------TGTATT---GGTACGTCGTAAAATCCCATTTAT
gi|7 : TGGTTCAGGCTAAG--AATAGAATCACTGTCGATCTCTGCA------GAGAGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTA--TCATTTTTTGTCATGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGGTTCC-AGG-GAGC--CAT--GAGTGATGGTAAGA-ATAAGATCACT-TGGCTCATGCATGTCGT-AAGAAGCGACAA-ATTGAGTAATATGATAGAATTTGCTGAAACTGTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---CATTCATT----TGTTGAT-G-TA--TT--TT-T--TTA-A-A-----TCTATAT-GTT-----AAT-ATG--TTG--T--TTTTGCAAATGTAGA------GTGAACA--TTG-AATCTTCCTTCC--TGTTGAC-GTTG-AAT--AACC------------TATAA------TA---TGTCGGTACGCTGTAAAACACTATTCATT
gi|6 : tcTGGTTCCGGCTAAG--AATAGAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTA--TCATTTTTTGTCATGTTCAATATATATATATATAATTGTGGTTAAATTATCAACACCTGTGTGGTTCC-AGG-GAGC--CAT--GAGTGATGGCAAGA-AAAGGACCACTGTGGCTCATGCATGTCGT-AAGAAGTGACAA-TTTGAGTAATATGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCATGGTTCTAGGTTCATTC-TG---CA---TATTCATT----GGTTGGT-G-TA--TT--TT-T--TTTAA-A-----TCTGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCA-AAT--AACC------------TATAA------TGTGTT---GGTACACCGTAAAACCCTATTga
gi|13 : gcaAAAATCACTGC-GATCTCTGCATGTATAGAGGGATAGGAGTCCTCCGAATGAGTGTCATGTT-T-ATTTTA--TCATTTTTTGTCATGTTCATTAA-------------TCTTGTTAAATTACCAACCCCTGTGTGGTTCC-AGG-GAGC--CAT--GAGTGATGACAAAA-TTAGGATCACTGTGGCTCATACATGTGAT-ATGAAGTGACAA-TTTGAGTAATTTGATAGAATTTGCTGCAACTTTGCAGTTCTGCAGGTATCA-----CT------GTTC-TG---TA---TGTTAATT----TGTTG---------TT--TT-T--GT--A-
gi|12 : AATCACTGTTGATCTCTGCA------GAGGGGTAGGAATCCTCTGACTGGGTGTCATGTT-C-ATTTTA--TCATTTTTTGTCATGTTCACTAT-------------TGTGGTTAAATTAC-AACCCCTGTGTGGTTCC-AGG-GAGC--CAT--GAGTGATGGCAAGA-ATAGGATCACTGT-----------------AAGAAGCGACAA-ATTGAGTAATATGTTAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-GATA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTG--GTG--T--TTTTGTACATGTAGA------GTGAACC--TGG-A---------------------ATCA-AAT--AACC------------TATAA------TG---T---GTTG----GTAAAATCCTATTCATTCcctgaaatcttccttcctgttggcgtcaaataacctaaaatgtgttggtacaccgtaaaaccccattcattcat
gi|4 : ACCTGTGCA------GAGTGGTAGGAATCCTCTGGCTGGCTTTCAGCTT-C-ATTTTA--TCATTTTTTGTCATGTCCTTTGC-------------TGTG-TTAAATTAGTAACCACTGTTTGGTTTCTAGGTGATA--AAT--GAGTGATGACAAGA-ACAGTATTGTTGTTGCTCAAACATGTTTT-AAAAGGTGACAA-ATGGAGTATTG-GATAGAATTTGCTGTAA--------TTCTGCAGGTATCAAGGTTCTAGGTTCATTCTTGATTCATTTTATTCATTGGTATGTTGTT-G-----TT--TT-T--CC--A-A-----TATGTAT-GCT-----AAG-TTA--TTG--TTATTTTGTGTATAGAGA------GT----C--TGG-AATCCACTTTCC--TTTTGAG-GTCATAAT--AA--------------TATAACTTTTTTGTGTT---GGTATACCACAGAACCat
gi|20 : ttctaggattcatgttcatgagtctgaggtcaccaataaaactattgaccaaggtctCCGCA------GATGGGTAGTAGTCTTCCAAATAGTTGCCAT----A-ATTATACATAG------TGAATGTTCAATAA-------------TGTTGTTTGGGTATCAGCATCTGTGTGGTTTG-AGG-Gc
gi|11 : aacatttatttaaataattttacataaaatttgaccagtgtaacatttagctaagaagtacgacaatgTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGGTTTC-AGA-GAGC--CATATGAGTGATGGCAAGA-ATAGGACCACTGTGGCTCATACATGTCGT-AAGAAGCGACAA-TTTGAGTAATACAATAGAATTTGCTGAAACTCTGCAGTTCTGCAAGTACCCCGGTTCTAGGTTCACTA-TG---CA---TATTCATT----TGTTGGT-G-TATTTT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTG--TTGATT--TTTTTTACATGAAGA------GGTAAAT--TGG---TCGT-----C--TGTTAGCAATCG--AT--A--C------------CATAA------tccctttgctgatatgaaaaga
gi|16 : cattttaGTTTC-AGG-TTGC--TATATGAGTGGTGAAAAGA-ATAAGACCACGCTAGATTGTTCATATAAT-AAGTGGCAACAACATCGAGTATT--TATCTACTTTGCTGAAA-------------------TCAAGGGTCTAAGTTCATTT-TG---TA---TATAAATG----TGTTGAT-G-TA--TTGGTT-T--CT--G-AATCATTCTGCAT-GTTACCTGAACATTG--TAA--T--TTCTGTACATGGA-A------ATGAATC--AGG--ATTTTTTTCCC--TGGTGGT-GTTA-TATAAAATCTTCTTTTTTCAGTGTGA------TT---T---GATACGCCGTAAAACTaactgacgcttaatatttattcaatcattgaacgagagtttagataaacaaagtgacgctcttattaaatgtgttgtttgtttaaatatttcacagtgacgaaaatgcaataca
gi|19 : ATAGAATTTGCTAAAACTCTGCAGTTCTGCAGGTATTAAGGTTCTAGGTCCATTC-TG---CA---TATTCATT----TGTTGAT-G-TAT-TT--TT-T--TT--ATA-----TATGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTACATGTAGA------GTTAACC--TGG-AATCTTCCTTCC--TGTTGGT-GTCG-AAT--AACC------------TATAA------TGTGTT---GGTACACTGTAAAACCCTATTTAagtccaattta
gi|21 : tGAATTTACTGAAACCGTGTATTTC-------A--AAGGTACTGGGTCCATTC-TG---TA---TATTCATT----TGTTGTTTG-TT--TT--TTGT--TC--A-A-----TGTGCATCATT-----A-T-TTG--TTG--T--TTTTGTACATGGAGA------ATGAGCC--CAA-AATCTTCTTTCCTGTGTTGGC-AT
gi|3 : tgtCAGGAAGGAAGATTCCAGGTTCACTC-TA---CA---TGTACAgccaagaaactcaaaattcattc
gi|2 : attctgtaaagagcatatttctaaatgttcaatttatatagagtttgtgtggttccggctaagaatagaatcactgtcaatctctgcagaggggtaggaatcctctgaatgggtgtcatgttcattttatcattttttgtcatgttcactattgtggttaaattatcaacacctgtgtgattccagggagccatgagtgatggcaagaataggatcactgtggcttatgcatgtcgtaagaagcgaaaaattgagtaatacgatagaatttgctgaaactctgcagttctgcaggtatcaaggttctaggttcattctgcatattcatttgttgatgtatttttaatctgtatgttaatttgttgttttCAGGAAGGAAGATTCCAGGTTCACTC-TA---CA---TGTACAttggcgttgaataacctataatgtgttggtacgtcata
gi|6 : taatttgtttcaagattctgtaagcttattttttggcttagacatgattttcttataccattttcacaaatacgtttgcttactacaaagtctgtgtggttccggctaagaatagaatcactgtcaatctctgcagaggggtaggaatcctccaaatgggtgtcatgttcattttatcattttttgtcatgttctctattgtggttaaattatcaacccctctgtggttctagggagccatgagtgatggcaagaataagatcactgtggcttatgcatgtcgtaagaagcgacaaactgagtaatacgatagaatttgctgaaactctgcagttctgcaggtatcacagttctaggttcattctgaatattcatttgttgatgtattttttttaatatgtatgttaatttgttgttttCAGGAAGGAAGATTCCAGGTTCACTC-TA---CA---TGTACAttggcgtcgaataatctataaaacgctattcattcgttc
gi|23 : gcatggttccggctaagaatagaatcactgccgatctctgcagaggggtaggaatcctccaaatgggtgtcatgttcattttatcattttttgtcatgttcaatatatatatatataattgtggttaaattatcaacacctgtgtggttccagggagccatgagtgatggcaagaaaaggaccactgtggctcatgcatgtcgtaagaagtgacaatttgagtaatatgatagaatttgctgaaactctgcagttctgcaggtatcatggttctaggttcattctgcatattcattggttggtgtattttttttaaatctgtatgttaatttgttgtttt-TG---CA---TATTCATA----AG---AT-G-TG--TT--TT-T------ACA-----TAGGTAC-GTT-----CAT-TT----TG--G--TCT-GTACAT--AGATAATATGTGAGTC--TAG-AATCGGCCTTCC--TGATAGC-AT---AAT--TGCA------------CAT--------TT---T---GTTACGCCGTAAAATTC--TTCACTCttggcgtcaaataacctataatgtgttggtacaccgtaaaaccctatt
gi|13 : -----TCTGTAT-GTT-----AAT-TTG--TTG--T--TTTTGTAC-------------------C--TGA-AATCTTCCTTCC--TGTTGGC-GTCA-AAT--AACC------------TAAAA------TGTGTT---GGTACACCGTAAAACCCCATTCATTCc
gi|3 : aaaatcactgcgatctctgcatgtatagagggataggagtcctccgaatgagtgtcatgtttattttatcattttttgtcatgttcattaatcttgttaaattaccaacccctgtgtggttccagggagccatgagtgatgacaaaattaggatcactgtggctcatacatgtgatatgaagtgacaatttgagtaatttgatagaatttgctgcaactttgcagttctgcaggtatcactgtTGAATATGCAGA------ATGAACC--TAG-AACCTTGATACC--TGat
gi|8 : attctgtaaagagcatatttctaaatgttcaatttatatagagtttgtgtggttccggctaagaatagaatcactgtcaatctctgcagaggggtaggaatcctctgaatgggtgtcatgttcattttatcattttttgtcatgttcactattgtggttaaattatcaacacctgtgtgattccagggagccatgagtgatggcaagaataggatcactgtggcttatgcatgtcgtaagaagcgaaaaattgagtaatacgatagaatttgctgaaactctgcagttctgTGAATATGCAGA------ATGAACC--TAG-AACCTTGATACC--TGtttgttgatgtatttttaatctgtatgttaatttgttgtttttgtacatgtagagtgaacctggaatcttccttcctgttggcgttgaataacctataatgtgttggtacgtcata
gi|12 : gtgtggttccggctaagaatagaatcactgtcgatctctgcagaggggtaggaaacgtctgaatgggtgtcctgttcattttatcattttttgtcatgttcactattgtggttaaattatcaacccctgtatggttccagggagccatgagtgatggcaagaataggatcactgtggcttatgcatgtcataagaagcgacaaatttggtaatacaatagaatttgctgaaactctacagttctgTGAATATGCAGA------ATGAACC--TAG-AACCTTGATACC--TGtttgttgatgtatttttttaatctgtatgttaatttgttgtttttgtacatgtaaagtgaacctggaatcttccttcctgttggcgtcgattaacatataatgtgttggtacgccgtaaaactc
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TGAGTTTTGTGCCCCCACATTCAAAGAATGGTGAATTGGCATTACATGTAAGTGTTGGTCCTGTCCAACTGTTCCTTCATACGTCCTTGGTAAAACATTATTGATCAATAACTTTTAAAGAGGTATATATATTCAATTAATATTGGGCATGTAGCTGTATAATTATAAAATAATACAGGGCAAGTTTTATATTTGACAGCATAGGTAAGATTTTACAGGAGTTATGGGCCCTTCTTTACTTATTTTATGGTACAATGATTTCTGATCAATAGCAAGGGTATTCGTGTCAACAGACACATCTCTGTCTAAAAATGGCGTGTGTGG
Unaligned ( gi|15 ): AAATTATCAACACATTGCCATCTTTAGGGCACAACACTTGAGTTGTATAAAACGAGGGCCACTGAGACTTGGGCATGTTGTAAGACGAGAAAAGTTTAGACAAATATTAAATGATTATATTATGTAATGAGAACGTAGTTCTAAAGAATCCGTATCATGTTTCTGATCTAGTAAATTTCATTTAATTTACATGTATCTATGATTTCGTTATGTATTAAGTTGCTTGCTTTGTATTGTTCACAGAGTATGATACTGGGATGTGTTTTTTCATTGTCATCACATGCCATGTGTTGAT
Unaligned ( gi|17 ): ATTCAAAGAAAGGAGAAGGGGCTTCAAGTTTTACCTCTGTTCATTTGTCCGGTAAAAAATTGGTTTCTGATCCATAAATTTTAATGGGGTCTATGTATTTTATTTATATTTAGTTTGTACCTGTATAATTGTAAAATTCAGATCAAGTTTGATAAATTTATCAATGACGGTCAATTTTACAGGAGTAATGGCCCCCTTTCAAACTTAATTTTCTGTTATTGAATAATT
Unaligned ( gi|22 ): GAGTTTTTATGTCCCTGCTATTTTTCCAATAGCGAGGAAGCATTAAGCATTGGCCCTGTCTGTTCGCTAGTTTGTGCATGCATCCATCCATCTAATCAATAACCTTTGAGAGAGTGTATGTATTTAATTTGGTGTGTAGCTGTATAATTAATTAATTAATAAAGACAA
Unaligned ( gi|24 ): TCGTCTATCAGTGGTAACAAATTGGTTTCTGATCTGACAATAACTTTTAAAGGGGTCTATGTATGTAATAAATATGTCGTTTGTAGCTGTATAAT
Unaligned ( gi|25 ): TCTTTATGTTAATTTGTTGTTTACTTCCTTCCTGATGCAGGTGTTGGTTCACCATAAAACCCCAATTTATTTATTCATTT
Unaligned ( gi|26 ): TTGGTAAACCATTACTTTAACATTATAACCATTCAGTTATTAACAAATAAAGCAATTATAAAAATAGCATCTGTTA
Alignments
lowQualScore : 1111111111111 11
lowQualScore : 3 55 1 888888 2 2 2 8888888888888 2 2 55 2 2 33 22 0 2 444 444 5555 2 2 55 33 2 33 8888 88888 2 55555 2 33 33 33 33 666666 33 2 33 2 2 444 2 777777 777777 33 77777
lowQualScore : . .. . ...... . . . ............. . . .. . . .. .. . . ... ... .... . . .. .. . .. .... ..... . ..... . .. .. .. .. ...... .. . .. . . ... . ...... ...... .. .....
lowQualScore : 7 00 4 222222 9 9 9 6666666666666 7 7 77 9 9 99 66 4 4 111 111 0000 4 4 66 22 4 22 8888 22222 4 99999 4 22 22 22 22 888888 22 4 22 4 5 444 5 222222 222222 77 77777
consensus : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
Reference ( family-53 ) : NNNTCAACCAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
gi|1 : TCAACCAAGCCCGTGCGGTCTCGGCTAAGAATA--GAATCGCTGCCAATCTCTGCA------GTGGGGTAGGTATTCTCCGAATGGGTGTCATGTTTC-ATTTTACCATTTTTTGTCA-TGTTCATTAAA------------TGTGGTTAAATTACCAACCCCTGTGCGG-TTCCAGG-GAGCCATATGAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATACATGTTGT-AAGAAGCAATAAT-AAGAGTAATACGATAGAATTCACTGAAACTCTGCAGTTCTGCAGGTATCGAGGTACTAGGTTCATTC-TG---CA---TATTCATT----TACTAAT-G--A--TT--TT-T--T-----A-----TCTCTAT-GTT-----AAT-TAGTT--G--T--TTT--TGTGCATGTAGC------ATGAACC--TGG-AATCATCCTTCC--TGTTGGC-ATTG-AATAA---CC-TAT------AT------TGTA--TTGGTATGC
gi|10 : tcatacatagatttcaaattcatatcttgctgaaatagcaaaaaaaaaaatctgtttacaaagaaagggcaaattggtcttgctcaaggacaccacacttagctgtttgggaggattaaattcatgatcctccaatcctgggtttgatgtGTGGTTCCCGCTAAGAATATAGAATCACTCTCGATCTCTGCA------GAGGGGTAGGAATCC---GAACAGGCACCACGTT-CCATTTCACCATTTTTTGTCC-AGTTCATTAT-------------TGTTGTTAAATTATCAACACCTATGTGG-TTCCAAG-GAATCGC--GAGTGATGGCAAAATATAGGATCACTATGGCTCATGC-TATCGTAAAGAAGTGGCAGT-TTGAGAAAT--GTTAGACTGTTTTGAAAC--------TCTGCAGGTATCGAGGTTCTATGTTCATTT-TG---CA---TATTCATT----CGTTAA----TA--TT--TC-T--TT----A-----TCTGTTT-GTC-----AAT-TTGTT--G--T--TTT--T-TCCATGTTGA------GTGAACCAGTAGTAATCTTCCTTCA--TGTTGGC-GTCG-AATAA---CCTTTT------AA------TGTA--TTGGTACGTCGTAAAATCC-----CATTTATtttcattca
gi|11 : TCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTTCAGA-GAGCCATATGAGTGATGGCAAGA-ATAGGACCACTGTGGCTCATACATGTCGT-AAGAAGCGACAAT-TTGAGTAATACAATAGAATTTGCTGAAACTCTGCAGTTCTGCAAGTACCCCGGTTCTAGGTTCACTA-TG---CA---TATTCATT----TGTTGGT-G-TATTTT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--GATT--TTT--TTTACATGAAGA------GGTAAAT--TGG---TCGT-----C--TGTTAGCAATCG--ATA-----C-CAT------AA------
gi|12 : cattttaAATCACTGTTGATCTCTGCA------GAGGGGTAGGAATCCTCTGACTGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTA-CAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGT-----------------AAGAAGCGACAAA-TTGAGTAATATGTTAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-GATA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGGT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AA---------------------TCA-AATAA---CC-TAT------AA------TGTG--TTG-------GTAAAATCC-----TATTCATTCaactgacgcttaatatttattcaatcattgaacgagagtttagataaacaaagtgacgctcttattaaatgtgttgtttgtttaaatatttcacagtgacgaaaatgcaataca
gi|13 : A--AAATCACTG-CGATCTCTGCATGTATAGAGGGATAGGAGTCCTCCGAATGAGTGTCATGTT-T-ATTTTATCATTTTTTGTCA-TGTTCATTAA-------------TCTTGTTAAATTACCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGACAAAA-TTAGGATCACTGTGGCTCATACATGTGAT-ATGAAGTGACAAT-TTGAGTAATTTGATAGAATTTGCTGCAACTTTGCAGTTCTGCAGGTATCA-----CT------GTTC-TG---TA---TGTTAATT----TGTTG---------TT--TT-T--GT--A-at
gi|13 : -----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTAC-------------------C--TGA-AATCTTCCTTCC--TGTTGGC-GTCA-AATAA---CC-TAA------AA------TGTG--TTGGTACACCGTAAAACCC-----CATTCATTCcctgaaatcttccttcctgttggcgtcaaataacctaaaatgtgttggtacaccgtaaaaccccattcattcat
gi|16 : aaaatcactgcgatctctgcatgtatagagggataggagtcctccgaatgagtgtcatgtttattttatcattttttgtcatgttcattaatcttgttaaattaccaacccctgtgtggttccagggagccatgagtgatgacaaaattaggatcactgtggctcatacatgtgatatgaagtgacaatttgagtaatttgatagaatttgctgcaactttgcagttctgcaggtatcactgtG-TTTCAGG-TTGCTATATGAGTGGTGAAAAGA-ATAAGACCACGCTAGATTGTTCATATAAT-AAGTGGCAACAACATCGAGTATT--TATCTACTTTGCTGAAA-------------------TCAAGGGTCTAAGTTCATTT-TG---TA---TATAAATG----TGTTGAT-G-TA--TTGGTT-T--CT--G-AATCATTCTGCAT-GTTACCTGAACATTGTA--A--T--TTC--TGTACATGGA-A------ATGAATC--AGG--ATTTTTTTCCC--TGGTGGT-GTTA-TATAAAATCT-TCTTTTTTCAG------TGTGATTTGATACGCCGTAAAACTC-----at
gi|18 : AAGCCCACTTGGTTCCGGCTAAGAATA--GAATCACTGCCAATCTCTGTA------GAGGGGTAGAAATCCTCCGAATGGGTGTCATGTT-C-ATTTAATCATTTTTTTTCA-TGTTCagtccaattta
gi|19 : tcatctgctagtcaaatctctgtacttttgttttttttgcatttggtttgtatattttattaaattccatgtcaatcagtcaaatgattcttgtttaATAGAATTTGCTAAAACTCTGCAGTTCTGCAGGTATTAAGGTTCTAGGTCCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TTT-ATA-----TATGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTTAACC--TGG-AATCTTCCTTCC--TGTTGGT-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACACTGTAAAACCC-----TATTTA
gi|2 : tACAAAGTCTGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCTCTAT-------------TGTGGTTAAATTATCAACCCCTCTGTGG-TTCTAGG-GAGCCAT--GAGTGATGGCAAGA-ATAAGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGACAAA-CTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCACAGTTCTAGGTTCATTC-TG---AA---TATTCATT----TGTTGAT-G-TAT-TT--TT-T--TT--A-A-----TATGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---TC-TAT------AA------
gi|20 : taatttgtttcaagattctgtaagcttattttttggcttagacatgattttcttataccattttcacaaatacgtttgcttactCCGCA------GATGGGTAGTAGTCTTCCAAATAGTTGCCATA-----ATTATA-CATA----GTGAATGTTCAATAA-------------TGTTGTTTGGGTATCAGCATCTGTGTGG-TTTGAGG-Gaacgctattcattcgttc
gi|21 : aacatttatttaaataattttacataaaatttgaccagtgtaacatttagctaagaagtacgacaatgGAATTTACTGAAACCGTGTATTTC-------A--AAGGTACTGGGTCCATTC-TG---TA---TATTCATT----TGTTGTTTG-TT--TT--TTGT--TC--A-A-----TGTGCATCATT-----A-T-TTGTT--G--T--TTT--TGTACATGGAGA------ATGAGCC--CAA-AATCTTCTTTCCTGTGTTGGC-ATtccctttgctgatatgaaaaga
gi|23 : tgt-TG---CA---TATTCATA----AG---AT-G-TG--TT--TT-T------ACA-----TAGGTAC-GTT-----CAT-TT--T--G--G--TCT---GTACAT--AGATAATATGTGAGTC--TAG-AATCGGCCTTCC--TGATAGC-AT---AATTG---C------------A------CATT--TTGTTACGCCGTAAAATTC-------TTCACTCgccaagaaactcaaaattcattc
gi|25 : GTG--TTGGTTCACCATAAAACCCCAATTTATTTATTCc
gi|3 : tctttatgttaatttgttgtttacttccttcctgatgcagAGTTTGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCTGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACACCTGTGTGA-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGAAAAA-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA------TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTTG-AATAA---CC-TAT------AA------TGTG--TTGGTACGTCATAattt
gi|4 : attctgtaaagagcatatttctaaatgttcaatttatatagGTCTACCTGTGCA------GAGTGGTAGGAATCCTCTGGCTGGCTTTCAGCTT-C-ATTTTATCATTTTTTGTCA-TGTCCTTTGC-------------TGT-GTTAAATTAGTAACCACTGTTTGGTTTCTAGGTGATAAAT--GAGTGATGACAAGA-ACAGTATTGTTGTTGCTCAAACATGTTTT-AAAAGGTGACAAA-TGGAGTATTG-GATAGAATTTGCTGTAA--------TTCTGCAGGTATCAAGGTTCTAGGTTCATTCTTGATTCATTTTATTCATTGGTATGTTGTT-G-----TT--TT-T--CC--A-A-----TATGTAT-GCT-----AAG-TTATT--G--TTATTT--TGTGTATAGAGA------GT----C--TGG-AATCCACTTTCC--TTTTGAG-GTCATAATAA------TAT------AACTTTTTTGTG--TTGGTATACCACAGAACCC-----
gi|5 : ttctaggattcatgttcatgagtctgaggtcaccaataaaactattgaccaagTCAATTCAGCCCGTGTGGTTCCGGCTAAGTATA--GAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTGCGAATGGGTGTCATGTT-A-ATTTTATCGCTTTCTTTCA-TGTTCACTAT-------------TGTGGTTAAACTACCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAAA-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-ATCG-AATAA---CC-TAT------AA------TG-----TGGTATGCCATAAAACTC-----TATTCATTCc
gi|6 : taaTGGTTCCGGCTAAGAATA--GAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCAATATATATATATATAATTGTGGTTAAATTATCAACACCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-AAAGGACCACTGTGGCTCATGCATGTCGT-AAGAAGTGACAAT-TTGAGTAATATGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCATGGTTCTAGGTTCATTC-TG---CA---TATTCATT----GGTTGGT-G-TA--TT--TT-T--TTTAA-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCA-AATAA---CC-TAT------AA------TGTG--TTGGTACACCGTAAAACCC-----TATT
gi|7 : gcaTGGTTCAGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGAGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGTAAGA-ATAAGATCACT-TGGCTCATGCATGTCGT-AAGAAGCGACAAA-TTGAGTAATATGATAGAATTTGCTGAAACTGTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---CATTCATT----TGTTGAT-G-TA--TT--TT-T--TTA-A-A-----TCTATAT-GTT-----AAT-ATGTT--G--T--TTT--TGCAAATGTAGA------GTGAACA--TTG-AATCTTCCTTCC--TGTTGAC-GTTG-AATAA---CC-TAT------AA------TATG--TCGGTACGCTGTAAAACAC-----TATTCATT
gi|8 : tcGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAAACGTCTGAATGGGTGTCCTGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTATGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAAA-TTTGGTAATACAATAGAATTTGCTGAAACTCTACAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAAA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-ATTAA---CA-TAT------AA------TGTG--TTGGTACGCCGTAAAACTC-----ga
gi|9 : GTGGTTCCGGCTAAGAATA--GAATCACTGACGATTTCTGCA------GAGGGGTAGGAATCCTTTGAATGGGTGTCATGTT-C-ATTTTATCATATTT-GTCA-TGTTCACTAT-------------TGTGGTTAAATCATCAACCCCTGTGTGG-TTTCAGG-GAGCTATATGAGTGATGGCAAGA-ATAAGACCATTGTGGCTCATGCATGTCGT-AAGAACCGACAAT-TTGAGTAATACAATAGAATTTGCT--------------CTGCAGGTATCAAGGTTCTAGGT-CATTC-TG---CA---TATTCATT----TGTTGGT-G-TA--TT--TT-TGGTT--A-AA----TCTGTAT-GTT-----AAT-TTGTTTTG--T--TTTTTTGTACATATAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGAGTTTTGTGCCCCCACATTCAAAGAATGGTGAATTGGCATTACATGTAAGTGTTGGTCCTGTCCAACTGTTCCTTCATACGTCCTTGGTAAAACATTATTGATCAATAACTTTTAAAGAGGTATATATATTCAATTAATATTGGGCATGTAGCTGTATAATTATAAAATAATACAGGGCAAGTTTTATATTTGACAGCATAGGTAAGATTTTACAGGAGTTATGGGCCCTTCTTTACTTATTTTATGGTACAATGATTTCTGATCAATAGCAAGGGTATTCGTGTCAACAGACACATCTCTGTCTAAAAATGGCGTGTGTGG
Unaligned ( gi|15 ): AAATTATCAACACATTGCCATCTTTAGGGCACAACACTTGAGTTGTATAAAACGAGGGCCACTGAGACTTGGGCATGTTGTAAGACGAGAAAAGTTTAGACAAATATTAAATGATTATATTATGTAATGAGAACGTAGTTCTAAAGAATCCGTATCATGTTTCTGATCTAGTAAATTTCATTTAATTTACATGTATCTATGATTTCGTTATGTATTAAGTTGCTTGCTTTGTATTGTTCACAGAGTATGATACTGGGATGTGTTTTTTCATTGTCATCACATGCCATGTGTTGAT
Unaligned ( gi|17 ): ATTCAAAGAAAGGAGAAGGGGCTTCAAGTTTTACCTCTGTTCATTTGTCCGGTAAAAAATTGGTTTCTGATCCATAAATTTTAATGGGGTCTATGTATTTTATTTATATTTAGTTTGTACCTGTATAATTGTAAAATTCAGATCAAGTTTGATAAATTTATCAATGACGGTCAATTTTACAGGAGTAATGGCCCCCTTTCAAACTTAATTTTCTGTTATTGAATAATT
Unaligned ( gi|22 ): GAGTTTTTATGTCCCTGCTATTTTTCCAATAGCGAGGAAGCATTAAGCATTGGCCCTGTCTGTTCGCTAGTTTGTGCATGCATCCATCCATCTAATCAATAACCTTTGAGAGAGTGTATGTATTTAATTTGGTGTGTAGCTGTATAATTAATTAATTAATAAAGACAA
Unaligned ( gi|24 ): TCGTCTATCAGTGGTAACAAATTGGTTTCTGATCTGACAATAACTTTTAAAGGGGTCTATGTATGTAATAAATATGTCGTTTGTAGCTGTATAAT
Unaligned ( gi|26 ): TTGGTAAACCATTACTTTAACATTATAACCATTCAGTTATTAACAAATAAAGCAATTATAAAAATAGCATCTGTTA
Alignments
lowQualScore : 1111111111111 11
lowQualScore : 1 55 1 888888 2 2 2 8888888888888 2 2 55 2 2 33 22 0 2 444 444 5555 2 2 55 33 2 33 8888 88888 2 55555 2 33 33 33 33 666666 33 2 33 2 2 444 2 777777 777777 33 77777
lowQualScore : . .. . ...... . . . ............. . . .. . . .. .. . . ... ... .... . . .. .. . .. .... ..... . ..... . .. .. .. .. ...... .. . .. . . ... . ...... ...... .. .....
lowQualScore : 0 00 4 222222 9 9 9 6666666666666 7 7 77 9 9 99 66 4 4 111 111 0000 4 4 66 22 4 22 8888 22222 4 99999 4 22 22 22 22 888888 22 4 22 4 5 444 5 222222 222222 77 77777
consensus : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
Reference ( family-53 ) : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
gi|1 : TCAACCAAGCCCGTGCGGTCTCGGCTAAGAATA--GAATCGCTGCCAATCTCTGCA------GTGGGGTAGGTATTCTCCGAATGGGTGTCATGTTTC-ATTTTACCATTTTTTGTCA-TGTTCATTAAA------------TGTGGTTAAATTACCAACCCCTGTGCGG-TTCCAGG-GAGCCATATGAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATACATGTTGT-AAGAAGCAATAAT-AAGAGTAATACGATAGAATTCACTGAAACTCTGCAGTTCTGCAGGTATCGAGGTACTAGGTTCATTC-TG---CA---TATTCATT----TACTAAT-G--A--TT--TT-T--T-----A-----TCTCTAT-GTT-----AAT-TAGTT--G--T--TTT--TGTGCATGTAGC------ATGAACC--TGG-AATCATCCTTCC--TGTTGGC-ATTG-AATAA---CC-TAT------AT------TGTA--TTGGTATGC
gi|10 : tcatacatagatttcaaattcatatcttgctgaaatagcaaaaaaaaaaatctgtttacaaagaaagggcaaattggtcttgctcaaggacaccacacttagctgtttgggaggattaaattcatgatcctccaatcctgggtttgatgtGTGGTTCCCGCTAAGAATATAGAATCACTCTCGATCTCTGCA------GAGGGGTAGGAATCC---GAACAGGCACCACGTT-CCATTTCACCATTTTTTGTCC-AGTTCATTAT-------------TGTTGTTAAATTATCAACACCTATGTGG-TTCCAAG-GAATCGC--GAGTGATGGCAAAATATAGGATCACTATGGCTCATGC-TATCGTAAAGAAGTGGCAGT-TTGAGAAAT--GTTAGACTGTTTTGAAAC--------TCTGCAGGTATCGAGGTTCTATGTTCATTT-TG---CA---TATTCATT----CGTTAA----TA--TT--TC-T--TT----A-----TCTGTTT-GTC-----AAT-TTGTT--G--T--TTT--T-TCCATGTTGA------GTGAACCAGTAGTAATCTTCCTTCA--TGTTGGC-GTCG-AATAA---CCTTTT------AA------TGTA--TTGGTACGTCGTAAAATCC-----CATTTATtttcattca
gi|11 : TCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTTCAGA-GAGCCATATGAGTGATGGCAAGA-ATAGGACCACTGTGGCTCATACATGTCGT-AAGAAGCGACAAT-TTGAGTAATACAATAGAATTTGCTGAAACTCTGCAGTTCTGCAAGTACCCCGGTTCTAGGTTCACTA-TG---CA---TATTCATT----TGTTGGT-G-TATTTT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--GATT--TTT--TTTACATGAAGA------GGTAAAT--TGG---TCGT-----C--TGTTAGCAATCG--ATA-----C-CAT------AA------
gi|12 : cattttaAATCACTGTTGATCTCTGCA------GAGGGGTAGGAATCCTCTGACTGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTA-CAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGT-----------------AAGAAGCGACAAA-TTGAGTAATATGTTAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-GATA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGGT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AA---------------------TCA-AATAA---CC-TAT------AA------TGTG--TTG-------GTAAAATCC-----TATTCATTCaactgacgcttaatatttattcaatcattgaacgagagtttagataaacaaagtgacgctcttattaaatgtgttgtttgtttaaatatttcacagtgacgaaaatgcaataca
gi|13 : A--AAATCACTG-CGATCTCTGCATGTATAGAGGGATAGGAGTCCTCCGAATGAGTGTCATGTT-T-ATTTTATCATTTTTTGTCA-TGTTCATTAA-------------TCTTGTTAAATTACCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGACAAAA-TTAGGATCACTGTGGCTCATACATGTGAT-ATGAAGTGACAAT-TTGAGTAATTTGATAGAATTTGCTGCAACTTTGCAGTTCTGCAGGTATCA-----CT------GTTC-TG---TA---TGTTAATT----TGTTG---------TT--TT-T--GT--A-at
gi|13 : -----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTAC-------------------C--TGA-AATCTTCCTTCC--TGTTGGC-GTCA-AATAA---CC-TAA------AA------TGTG--TTGGTACACCGTAAAACCC-----CATTCATTCcctgaaatcttccttcctgttggcgtcaaataacctaaaatgtgttggtacaccgtaaaaccccattcattcat
gi|16 : aaaatcactgcgatctctgcatgtatagagggataggagtcctccgaatgagtgtcatgtttattttatcattttttgtcatgttcattaatcttgttaaattaccaacccctgtgtggttccagggagccatgagtgatgacaaaattaggatcactgtggctcatacatgtgatatgaagtgacaatttgagtaatttgatagaatttgctgcaactttgcagttctgcaggtatcactgtG-TTTCAGG-TTGCTATATGAGTGGTGAAAAGA-ATAAGACCACGCTAGATTGTTCATATAAT-AAGTGGCAACAACATCGAGTATT--TATCTACTTTGCTGAAA-------------------TCAAGGGTCTAAGTTCATTT-TG---TA---TATAAATG----TGTTGAT-G-TA--TTGGTT-T--CT--G-AATCATTCTGCAT-GTTACCTGAACATTGTA--A--T--TTC--TGTACATGGA-A------ATGAATC--AGG--ATTTTTTTCCC--TGGTGGT-GTTA-TATAAAATCT-TCTTTTTTCAG------TGTGATTTGATACGCCGTAAAACTC-----at
gi|18 : AAGCCCACTTGGTTCCGGCTAAGAATA--GAATCACTGCCAATCTCTGTA------GAGGGGTAGAAATCCTCCGAATGGGTGTCATGTT-C-ATTTAATCATTTTTTTTCA-TGTTCagtccaattta
gi|19 : tcatctgctagtcaaatctctgtacttttgttttttttgcatttggtttgtatattttattaaattccatgtcaatcagtcaaatgattcttgtttaATAGAATTTGCTAAAACTCTGCAGTTCTGCAGGTATTAAGGTTCTAGGTCCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TTT-ATA-----TATGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTTAACC--TGG-AATCTTCCTTCC--TGTTGGT-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACACTGTAAAACCC-----TATTTA
gi|2 : tACAAAGTCTGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCTCTAT-------------TGTGGTTAAATTATCAACCCCTCTGTGG-TTCTAGG-GAGCCAT--GAGTGATGGCAAGA-ATAAGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGACAAA-CTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCACAGTTCTAGGTTCATTC-TG---AA---TATTCATT----TGTTGAT-G-TAT-TT--TT-T--TT--A-A-----TATGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---TC-TAT------AA------
gi|20 : taatttgtttcaagattctgtaagcttattttttggcttagacatgattttcttataccattttcacaaatacgtttgcttactCCGCA------GATGGGTAGTAGTCTTCCAAATAGTTGCCATA-----ATTATA-CATA----GTGAATGTTCAATAA-------------TGTTGTTTGGGTATCAGCATCTGTGTGG-TTTGAGG-Gaacgctattcattcgttc
gi|21 : aacatttatttaaataattttacataaaatttgaccagtgtaacatttagctaagaagtacgacaatgGAATTTACTGAAACCGTGTATTTC-------A--AAGGTACTGGGTCCATTC-TG---TA---TATTCATT----TGTTGTTTG-TT--TT--TTGT--TC--A-A-----TGTGCATCATT-----A-T-TTGTT--G--T--TTT--TGTACATGGAGA------ATGAGCC--CAA-AATCTTCTTTCCTGTGTTGGC-ATtccctttgctgatatgaaaaga
gi|23 : tgt-TG---CA---TATTCATA----AG---AT-G-TG--TT--TT-T------ACA-----TAGGTAC-GTT-----CAT-TT--T--G--G--TCT---GTACAT--AGATAATATGTGAGTC--TAG-AATCGGCCTTCC--TGATAGC-AT---AATTG---C------------A------CATT--TTGTTACGCCGTAAAATTC-------TTCACTCgccaagaaactcaaaattcattc
gi|25 : GTG--TTGGTTCACCATAAAACCCCAATTTATTTATTCc
gi|3 : tctttatgttaatttgttgtttacttccttcctgatgcagAGTTTGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCTGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACACCTGTGTGA-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGAAAAA-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA------TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTTG-AATAA---CC-TAT------AA------TGTG--TTGGTACGTCATAattt
gi|4 : attctgtaaagagcatatttctaaatgttcaatttatatagGTCTACCTGTGCA------GAGTGGTAGGAATCCTCTGGCTGGCTTTCAGCTT-C-ATTTTATCATTTTTTGTCA-TGTCCTTTGC-------------TGT-GTTAAATTAGTAACCACTGTTTGGTTTCTAGGTGATAAAT--GAGTGATGACAAGA-ACAGTATTGTTGTTGCTCAAACATGTTTT-AAAAGGTGACAAA-TGGAGTATTG-GATAGAATTTGCTGTAA--------TTCTGCAGGTATCAAGGTTCTAGGTTCATTCTTGATTCATTTTATTCATTGGTATGTTGTT-G-----TT--TT-T--CC--A-A-----TATGTAT-GCT-----AAG-TTATT--G--TTATTT--TGTGTATAGAGA------GT----C--TGG-AATCCACTTTCC--TTTTGAG-GTCATAATAA------TAT------AACTTTTTTGTG--TTGGTATACCACAGAACCC-----
gi|5 : ttctaggattcatgttcatgagtctgaggtcaccaataaaactattgaccaagTCAATTCAGCCCGTGTGGTTCCGGCTAAGTATA--GAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTGCGAATGGGTGTCATGTT-A-ATTTTATCGCTTTCTTTCA-TGTTCACTAT-------------TGTGGTTAAACTACCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAAA-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-ATCG-AATAA---CC-TAT------AA------TG-----TGGTATGCCATAAAACTC-----TATTCATTCc
gi|6 : taaTGGTTCCGGCTAAGAATA--GAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCAATATATATATATATAATTGTGGTTAAATTATCAACACCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-AAAGGACCACTGTGGCTCATGCATGTCGT-AAGAAGTGACAAT-TTGAGTAATATGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCATGGTTCTAGGTTCATTC-TG---CA---TATTCATT----GGTTGGT-G-TA--TT--TT-T--TTTAA-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCA-AATAA---CC-TAT------AA------TGTG--TTGGTACACCGTAAAACCC-----TATT
gi|7 : gcaTGGTTCAGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGAGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGTAAGA-ATAAGATCACT-TGGCTCATGCATGTCGT-AAGAAGCGACAAA-TTGAGTAATATGATAGAATTTGCTGAAACTGTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---CATTCATT----TGTTGAT-G-TA--TT--TT-T--TTA-A-A-----TCTATAT-GTT-----AAT-ATGTT--G--T--TTT--TGCAAATGTAGA------GTGAACA--TTG-AATCTTCCTTCC--TGTTGAC-GTTG-AATAA---CC-TAT------AA------TATG--TCGGTACGCTGTAAAACAC-----TATTCATT
gi|8 : tcGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAAACGTCTGAATGGGTGTCCTGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTATGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAAA-TTTGGTAATACAATAGAATTTGCTGAAACTCTACAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAAA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-ATTAA---CA-TAT------AA------TGTG--TTGGTACGCCGTAAAACTC-----ga
gi|9 : GTGGTTCCGGCTAAGAATA--GAATCACTGACGATTTCTGCA------GAGGGGTAGGAATCCTTTGAATGGGTGTCATGTT-C-ATTTTATCATATTT-GTCA-TGTTCACTAT-------------TGTGGTTAAATCATCAACCCCTGTGTGG-TTTCAGG-GAGCTATATGAGTGATGGCAAGA-ATAAGACCATTGTGGCTCATGCATGTCGT-AAGAACCGACAAT-TTGAGTAATACAATAGAATTTGCT--------------CTGCAGGTATCAAGGTTCTAGGT-CATTC-TG---CA---TATTCATT----TGTTGGT-G-TA--TT--TT-TGGTT--A-AA----TCTGTAT-GTT-----AAT-TTGTTTTG--T--TTTTTTGTACATATAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATT
blockSeqs : A TA T TGTATA . C A ATATATATATAAT T T AT T A CA AC T ATT TTT GGTA T A TT GG G GG TAT ATCAT C ACCTG A TT AT TA TT TAATAT AG T TG A T AAT T TTTTTC CTTTTT AT CAATT
blockSeqs : T . T . . . . . . . AT . . T AT . . . . . . T . . . TAA A . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . AT . . T TT . . . . . . . . . . AC . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . A AC . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . T AC . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . A AC . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . A AT . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . A AT . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . A AC . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . T AC . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . A G . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ************* ** A***
originalCons : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
finalCons : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TTA---A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGAGTTTTGTGCCCCCACATTCAAAGAATGGTGAATTGGCATTACATGTAAGTGTTGGTCCTGTCCAACTGTTCCTTCATACGTCCTTGGTAAAACATTATTGATCAATAACTTTTAAAGAGGTATATATATTCAATTAATATTGGGCATGTAGCTGTATAATTATAAAATAATACAGGGCAAGTTTTATATTTGACAGCATAGGTAAGATTTTACAGGAGTTATGGGCCCTTCTTTACTTATTTTATGGTACAATGATTTCTGATCAATAGCAAGGGTATTCGTGTCAACAGACACATCTCTGTCTAAAAATGGCGTGTGTGG
Unaligned ( gi|15 ): AAATTATCAACACATTGCCATCTTTAGGGCACAACACTTGAGTTGTATAAAACGAGGGCCACTGAGACTTGGGCATGTTGTAAGACGAGAAAAGTTTAGACAAATATTAAATGATTATATTATGTAATGAGAACGTAGTTCTAAAGAATCCGTATCATGTTTCTGATCTAGTAAATTTCATTTAATTTACATGTATCTATGATTTCGTTATGTATTAAGTTGCTTGCTTTGTATTGTTCACAGAGTATGATACTGGGATGTGTTTTTTCATTGTCATCACATGCCATGTGTTGAT
Unaligned ( gi|17 ): ATTCAAAGAAAGGAGAAGGGGCTTCAAGTTTTACCTCTGTTCATTTGTCCGGTAAAAAATTGGTTTCTGATCCATAAATTTTAATGGGGTCTATGTATTTTATTTATATTTAGTTTGTACCTGTATAATTGTAAAATTCAGATCAAGTTTGATAAATTTATCAATGACGGTCAATTTTACAGGAGTAATGGCCCCCTTTCAAACTTAATTTTCTGTTATTGAATAATT
Unaligned ( gi|22 ): GAGTTTTTATGTCCCTGCTATTTTTCCAATAGCGAGGAAGCATTAAGCATTGGCCCTGTCTGTTCGCTAGTTTGTGCATGCATCCATCCATCTAATCAATAACCTTTGAGAGAGTGTATGTATTTAATTTGGTGTGTAGCTGTATAATTAATTAATTAATAAAGACAA
Unaligned ( gi|24 ): TCGTCTATCAGTGGTAACAAATTGGTTTCTGATCTGACAATAACTTTTAAAGGGGTCTATGTATGTAATAAATATGTCGTTTGTAGCTGTATAAT
Unaligned ( gi|26 ): TTGGTAAACCATTACTTTAACATTATAACCATTCAGTTATTAACAAATAAAGCAATTATAAAAATAGCATCTGTTA
Alignments
lowQualScore : 1111111111111 11
lowQualScore : 1 55 1 888888 2 2 2 8888888888888 2 2 55 2 2 33 22 0 2 444 444 5555 2 2 55 33 2 33 8888 88888 2 55555 2 33 33 33 33 666666 33 2 33 2 2 444 2 777777 777777 33 77777
lowQualScore : . .. . ...... . . . ............. . . .. . . .. .. . . ... ... .... . . .. .. . .. .... ..... . ..... . .. .. .. .. ...... .. . .. . . ... . ...... ...... .. .....
lowQualScore : 0 00 4 222222 9 9 9 6666666666666 7 7 77 9 9 99 66 4 4 111 111 0000 4 4 66 22 4 22 8888 22222 4 99999 4 22 22 22 22 888888 22 4 22 4 5 444 5 222222 222222 77 77777
consensus : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
Reference ( family-53 ) : NNNTCAACNAAGCCCGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATGCATGTCGT-AAGAAGCGACAAN-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATTC
gi|1 : TCAACCAAGCCCGTGCGGTCTCGGCTAAGAATA--GAATCGCTGCCAATCTCTGCA------GTGGGGTAGGTATTCTCCGAATGGGTGTCATGTTTC-ATTTTACCATTTTTTGTCA-TGTTCATTAAA------------TGTGGTTAAATTACCAACCCCTGTGCGG-TTCCAGG-GAGCCATATGAGTGATGGCAAGA-ATAGGATCACTGTGGCTCATACATGTTGT-AAGAAGCAATAAT-AAGAGTAATACGATAGAATTCACTGAAACTCTGCAGTTCTGCAGGTATCGAGGTACTAGGTTCATTC-TG---CA---TATTCATT----TACTAAT-G--A--TT--TT-T--T-----A-----TCTCTAT-GTT-----AAT-TAGTT--G--T--TTT--TGTGCATGTAGC------ATGAACC--TGG-AATCATCCTTCC--TGTTGGC-ATTG-AATAA---CC-TAT------AT------TGTA--TTGGTATGC
gi|10 : tcatacatagatttcaaattcatatcttgctgaaatagcaaaaaaaaaaatctgtttacaaagaaagggcaaattggtcttgctcaaggacaccacacttagctgtttgggaggattaaattcatgatcctccaatcctgggtttgatgtGTGGTTCCCGCTAAGAATATAGAATCACTCTCGATCTCTGCA------GAGGGGTAGGAATCC---GAACAGGCACCACGTT-CCATTTCACCATTTTTTGTCC-AGTTCATTAT-------------TGTTGTTAAATTATCAACACCTATGTGG-TTCCAAG-GAATCGC--GAGTGATGGCAAAATATAGGATCACTATGGCTCATGC-TATCGTAAAGAAGTGGCAGT-TTGAGAAAT--GTTAGACTGTTTTGAAAC--------TCTGCAGGTATCGAGGTTCTATGTTCATTT-TG---CA---TATTCATT----CGTTAA----TA--TT--TC-T--TT----A-----TCTGTTT-GTC-----AAT-TTGTT--G--T--TTT--T-TCCATGTTGA------GTGAACCAGTAGTAATCTTCCTTCA--TGTTGGC-GTCG-AATAA---CCTTTT------AA------TGTA--TTGGTACGTCGTAAAATCC-----CATTTATtttcattca
gi|11 : TCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTTCAGA-GAGCCATATGAGTGATGGCAAGA-ATAGGACCACTGTGGCTCATACATGTCGT-AAGAAGCGACAAT-TTGAGTAATACAATAGAATTTGCTGAAACTCTGCAGTTCTGCAAGTACCCCGGTTCTAGGTTCACTA-TG---CA---TATTCATT----TGTTGGT-G-TATTTT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--GATT--TTT--TTTACATGAAGA------GGTAAAT--TGG---TCGT-----C--TGTTAGCAATCG--ATA-----C-CAT------AA------
gi|12 : cattttaAATCACTGTTGATCTCTGCA------GAGGGGTAGGAATCCTCTGACTGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTA-CAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGT-----------------AAGAAGCGACAAA-TTGAGTAATATGTTAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-GATA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGGT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AA---------------------TCA-AATAA---CC-TAT------AA------TGTG--TTG-------GTAAAATCC-----TATTCATTCaactgacgcttaatatttattcaatcattgaacgagagtttagataaacaaagtgacgctcttattaaatgtgttgtttgtttaaatatttcacagtgacgaaaatgcaataca
gi|13 : A--AAATCACTG-CGATCTCTGCATGTATAGAGGGATAGGAGTCCTCCGAATGAGTGTCATGTT-T-ATTTTATCATTTTTTGTCA-TGTTCATTAA-------------TCTTGTTAAATTACCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGACAAAA-TTAGGATCACTGTGGCTCATACATGTGAT-ATGAAGTGACAAT-TTGAGTAATTTGATAGAATTTGCTGCAACTTTGCAGTTCTGCAGGTATCA-----CT------GTTC-TG---TA---TGTTAATT----TGTTG---------TT--TT-T--GT--A-at
gi|13 : -----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTAC-------------------C--TGA-AATCTTCCTTCC--TGTTGGC-GTCA-AATAA---CC-TAA------AA------TGTG--TTGGTACACCGTAAAACCC-----CATTCATTCcctgaaatcttccttcctgttggcgtcaaataacctaaaatgtgttggtacaccgtaaaaccccattcattcat
gi|16 : aaaatcactgcgatctctgcatgtatagagggataggagtcctccgaatgagtgtcatgtttattttatcattttttgtcatgttcattaatcttgttaaattaccaacccctgtgtggttccagggagccatgagtgatgacaaaattaggatcactgtggctcatacatgtgatatgaagtgacaatttgagtaatttgatagaatttgctgcaactttgcagttctgcaggtatcactgtG-TTTCAGG-TTGCTATATGAGTGGTGAAAAGA-ATAAGACCACGCTAGATTGTTCATATAAT-AAGTGGCAACAACATCGAGTATT--TATCTACTTTGCTGAAA-------------------TCAAGGGTCTAAGTTCATTT-TG---TA---TATAAATG----TGTTGAT-G-TA--TTGGTT-T--CT--G-AATCATTCTGCAT-GTTACCTGAACATTGTA--A--T--TTC--TGTACATGGA-A------ATGAATC--AGG--ATTTTTTTCCC--TGGTGGT-GTTA-TATAAAATCT-TCTTTTTTCAG------TGTGATTTGATACGCCGTAAAACTC-----at
gi|18 : AAGCCCACTTGGTTCCGGCTAAGAATA--GAATCACTGCCAATCTCTGTA------GAGGGGTAGAAATCCTCCGAATGGGTGTCATGTT-C-ATTTAATCATTTTTTTTCA-TGTTCagtccaattta
gi|19 : tcatctgctagtcaaatctctgtacttttgttttttttgcatttggtttgtatattttattaaattccatgtcaatcagtcaaatgattcttgtttaATAGAATTTGCTAAAACTCTGCAGTTCTGCAGGTATTAAGGTTCTAGGTCCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TTT-ATA-----TATGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTTAACC--TGG-AATCTTCCTTCC--TGTTGGT-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACACTGTAAAACCC-----TATTTA
gi|2 : tACAAAGTCTGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCTCTAT-------------TGTGGTTAAATTATCAACCCCTCTGTGG-TTCTAGG-GAGCCAT--GAGTGATGGCAAGA-ATAAGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGACAAA-CTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCACAGTTCTAGGTTCATTC-TG---AA---TATTCATT----TGTTGAT-G-TAT-TT--TT-T--TT--A-A-----TATGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---TC-TAT------AA------
gi|20 : taatttgtttcaagattctgtaagcttattttttggcttagacatgattttcttataccattttcacaaatacgtttgcttactCCGCA------GATGGGTAGTAGTCTTCCAAATAGTTGCCATA-----ATTATA-CATA----GTGAATGTTCAATAA-------------TGTTGTTTGGGTATCAGCATCTGTGTGG-TTTGAGG-Gaacgctattcattcgttc
gi|21 : aacatttatttaaataattttacataaaatttgaccagtgtaacatttagctaagaagtacgacaatgGAATTTACTGAAACCGTGTATTTC-------A--AAGGTACTGGGTCCATTC-TG---TA---TATTCATT----TGTTGTTTG-TT--TT--TTGT--TC--A-A-----TGTGCATCATT-----A-T-TTGTT--G--T--TTT--TGTACATGGAGA------ATGAGCC--CAA-AATCTTCTTTCCTGTGTTGGC-ATtccctttgctgatatgaaaaga
gi|23 : tgt-TG---CA---TATTCATA----AG---AT-G-TG--TT--TT-T------ACA-----TAGGTAC-GTT-----CAT-TT--T--G--G--TCT---GTACAT--AGATAATATGTGAGTC--TAG-AATCGGCCTTCC--TGATAGC-AT---AATTG---C------------A------CATT--TTGTTACGCCGTAAAATTC-------TTCACTCgccaagaaactcaaaattcattc
gi|25 : GTG--TTGGTTCACCATAAAACCCCAATTTATTTATTCc
gi|3 : tctttatgttaatttgttgtttacttccttcctgatgcagAGTTTGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCAATCTCTGCA------GAGGGGTAGGAATCCTCTGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACACCTGTGTGA-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCGT-AAGAAGCGAAAAA-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA------TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTTG-AATAA---CC-TAT------AA------TGTG--TTGGTACGTCATAattt
gi|4 : attctgtaaagagcatatttctaaatgttcaatttatatagGTCTACCTGTGCA------GAGTGGTAGGAATCCTCTGGCTGGCTTTCAGCTT-C-ATTTTATCATTTTTTGTCA-TGTCCTTTGC-------------TGT-GTTAAATTAGTAACCACTGTTTGGTTTCTAGGTGATAAAT--GAGTGATGACAAGA-ACAGTATTGTTGTTGCTCAAACATGTTTT-AAAAGGTGACAAA-TGGAGTATTG-GATAGAATTTGCTGTAA--------TTCTGCAGGTATCAAGGTTCTAGGTTCATTCTTGATTCATTTTATTCATTGGTATGTTGTT-G-----TT--TT-T--CC--A-A-----TATGTAT-GCT-----AAG-TTATT--G--TTATTT--TGTGTATAGAGA------GT----C--TGG-AATCCACTTTCC--TTTTGAG-GTCATAATAA------TAT------AACTTTTTTGTG--TTGGTATACCACAGAACCC-----
gi|5 : ttctaggattcatgttcatgagtctgaggtcaccaataaaactattgaccaagTCAATTCAGCCCGTGTGGTTCCGGCTAAGTATA--GAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTGCGAATGGGTGTCATGTT-A-ATTTTATCGCTTTCTTTCA-TGTTCACTAT-------------TGTGGTTAAACTACCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAAA-TTGAGTAATACGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-ATCG-AATAA---CC-TAT------AA------TG-----TGGTATGCCATAAAACTC-----TATTCATTCc
gi|6 : taaTGGTTCCGGCTAAGAATA--GAATCACTGCCGATCTCTGCA------GAGGGGTAGGAATCCTCCAAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCAATATATATATATATAATTGTGGTTAAATTATCAACACCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-AAAGGACCACTGTGGCTCATGCATGTCGT-AAGAAGTGACAAT-TTGAGTAATATGATAGAATTTGCTGAAACTCTGCAGTTCTGCAGGTATCATGGTTCTAGGTTCATTC-TG---CA---TATTCATT----GGTTGGT-G-TA--TT--TT-T--TTTAA-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCA-AATAA---CC-TAT------AA------TGTG--TTGGTACACCGTAAAACCC-----TATT
gi|7 : gcaTGGTTCAGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGAGGTAGGAATCCTCCGAATGGGTGTCATGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTGTGG-TTCCAGG-GAGCCAT--GAGTGATGGTAAGA-ATAAGATCACT-TGGCTCATGCATGTCGT-AAGAAGCGACAAA-TTGAGTAATATGATAGAATTTGCTGAAACTGTGCAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---CATTCATT----TGTTGAT-G-TA--TT--TT-T--TTA-A-A-----TCTATAT-GTT-----AAT-ATGTT--G--T--TTT--TGCAAATGTAGA------GTGAACA--TTG-AATCTTCCTTCC--TGTTGAC-GTTG-AATAA---CC-TAT------AA------TATG--TCGGTACGCTGTAAAACAC-----TATTCATT
gi|8 : tcGTGTGGTTCCGGCTAAGAATA--GAATCACTGTCGATCTCTGCA------GAGGGGTAGGAAACGTCTGAATGGGTGTCCTGTT-C-ATTTTATCATTTTTTGTCA-TGTTCACTAT-------------TGTGGTTAAATTATCAACCCCTGTATGG-TTCCAGG-GAGCCAT--GAGTGATGGCAAGA-ATAGGATCACTGTGGCTTATGCATGTCAT-AAGAAGCGACAAA-TTTGGTAATACAATAGAATTTGCTGAAACTCTACAGTTCTGCAGGTATCAAGGTTCTAGGTTCATTC-TG---CA---TATTCATT----TGTTGAT-G-TA--TT--TT-T--TT--A-A-----TCTGTAT-GTT-----AAT-TTGTT--G--T--TTT--TGTACATGTAAA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-ATTAA---CA-TAT------AA------TGTG--TTGGTACGCCGTAAAACTC-----ga
gi|9 : GTGGTTCCGGCTAAGAATA--GAATCACTGACGATTTCTGCA------GAGGGGTAGGAATCCTTTGAATGGGTGTCATGTT-C-ATTTTATCATATTT-GTCA-TGTTCACTAT-------------TGTGGTTAAATCATCAACCCCTGTGTGG-TTTCAGG-GAGCTATATGAGTGATGGCAAGA-ATAAGACCATTGTGGCTCATGCATGTCGT-AAGAACCGACAAT-TTGAGTAATACAATAGAATTTGCT--------------CTGCAGGTATCAAGGTTCTAGGT-CATTC-TG---CA---TATTCATT----TGTTGGT-G-TA--TT--TT-TGGTT--A-AA----TCTGTAT-GTT-----AAT-TTGTTTTG--T--TTTTTTGTACATATAGA------GTGAACC--TGG-AATCTTCCTTCC--TGTTGGC-GTCG-AATAA---CC-TAT------AA------TGTG--TTGGTACGCCGTAAAACCC-----TATTCATT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGAGTTTTGTGCCCCCACATTCAAAGAATGGTGAATTGGCATTACATGTAAGTGTTGGTCCTGTCCAACTGTTCCTTCATACGTCCTTGGTAAAACATTATTGATCAATAACTTTTAAAGAGGTATATATATTCAATTAATATTGGGCATGTAGCTGTATAATTATAAAATAATACAGGGCAAGTTTTATATTTGACAGCATAGGTAAGATTTTACAGGAGTTATGGGCCCTTCTTTACTTATTTTATGGTACAATGATTTCTGATCAATAGCAAGGGTATTCGTGTCAACAGACACATCTCTGTCTAAAAATGGCGTGTGTGG
Unaligned ( gi|15 ): AAATTATCAACACATTGCCATCTTTAGGGCACAACACTTGAGTTGTATAAAACGAGGGCCACTGAGACTTGGGCATGTTGTAAGACGAGAAAAGTTTAGACAAATATTAAATGATTATATTATGTAATGAGAACGTAGTTCTAAAGAATCCGTATCATGTTTCTGATCTAGTAAATTTCATTTAATTTACATGTATCTATGATTTCGTTATGTATTAAGTTGCTTGCTTTGTATTGTTCACAGAGTATGATACTGGGATGTGTTTTTTCATTGTCATCACATGCCATGTGTTGAT
Unaligned ( gi|17 ): ATTCAAAGAAAGGAGAAGGGGCTTCAAGTTTTACCTCTGTTCATTTGTCCGGTAAAAAATTGGTTTCTGATCCATAAATTTTAATGGGGTCTATGTATTTTATTTATATTTAGTTTGTACCTGTATAATTGTAAAATTCAGATCAAGTTTGATAAATTTATCAATGACGGTCAATTTTACAGGAGTAATGGCCCCCTTTCAAACTTAATTTTCTGTTATTGAATAATT
Unaligned ( gi|22 ): GAGTTTTTATGTCCCTGCTATTTTTCCAATAGCGAGGAAGCATTAAGCATTGGCCCTGTCTGTTCGCTAGTTTGTGCATGCATCCATCCATCTAATCAATAACCTTTGAGAGAGTGTATGTATTTAATTTGGTGTGTAGCTGTATAATTAATTAATTAATAAAGACAA
Unaligned ( gi|24 ): TCGTCTATCAGTGGTAACAAATTGGTTTCTGATCTGACAATAACTTTTAAAGGGGTCTATGTATGTAATAAATATGTCGTTTGTAGCTGTATAAT
Unaligned ( gi|26 ): TTGGTAAACCATTACTTTAACATTATAACCATTCAGTTATTAACAAATAAAGCAATTATAAAAATAGCATCTGTTA