lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222 1111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111 1111111 11111111 1111111 1
lowQualScore : 7 88 55 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9999 7 33 11111111 44 3 1111 3 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111111 6 2 77777 1111111 3 1 11111111 1 0000000 66 666666 22 333 5 3
lowQualScore : . .. .. .................................................................................................... .... . .. ........ .. . .... . . ......................................................................................................................... .......... . . ..... ....... . . ........ . ....... .. ...... .. ... . .
lowQualScore : 3 77 22 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7777 5 77 44444444 55 5 1111 6 6 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5555555555 8 9 88888 0000000 1 4 22222222 0 0000000 88 444444 99 777 5 8
consensus : TAAAGATAT--ACTGAACGGAACAGCTAACCCGC--CA--C---------CTGA----CAT----------TT----------------T-------------------------AT----------------G----TAT----TTTC-T--CAAAA---A-GN-ATTAAAGCAATNTCCTT-GAA-ATTTG-----GACT---------TAAA---TAAGAAA-GAA-CATTT-GGCTATGTAA-AAT----CA-ATAC----AT-A-TTGTCCG---TTNATGTCGT----A--TACAAAT----------TTTAATA---A---CGCTNC-TC----AATATTTT--GAC--G-AAGATA--------TTGGAAAT-------ACA--AAA------GT--GGCG---GGTTAGCTGTTCCGTTCAGTA
Reference ( gi|4 ) : TAAAAATATTCACTGAACGGAACAGCTAACCCGC--CA--T---------CTGA----TAT----------TT----------------T-------------------------AT----------------T----TAT----TTTC-T--CAAAA---A-GA-ATCAAAGCAATGTCCTT-GAA-ATTTG-----GTCT---------TAAA---TAAGAAA-GAC-CATTTAGGCTATGTAA-AAT----CA-ATAC----AT-A-TTGTACA---TTAATCTCGT----A--TACAAAT----------TTTAATG---A---TGCTTC-TC----AATATTTT--AAT--G-AAGATA--------TTGGAAAT-------ACA--AAA------GT--GGCG---GATTAGCTGTTCCTTTCAGTA
gi|1 : TAAAGA-AT--ACTGAACAGAACTGCTAACCCGC--CA--C---------CTGA----CAT----------TTCATGTAACTGACATTTT-------------------------AT----------------G----TAT----TATC-T--AAAAA---AAGT-ATTAAAGCAATTTCCTT-CAA-ATTAG-----GACT---------TGAG---CTAGAAA-AAA-CATTTAGACCATGTA-------------------------TTGT-------------CAT----A--TACAAAC----------TTTAATA---A---AGCTAC-TC----CAACTTTT--AAC--G-ATAATA--------CCGGAAAT-------ACA--AAA------GT--GGCA---GGTTAGCTGTTCCGTTCAGTA
gi|2 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgAAATAT--ACTAAAC-----AGCTAACACGC--CA--C---------CTGA----TAT----------TT----------------TGGGTTAAACTTTTACCAGACATGTTAT----------------G----TAT----TTAC-T--CGAAA---G-GATATCGAAGCAATATC--T-AAA-ATGTG-----GATT---------TGAA---TAAGAAT-GAt
gi|7 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttTATTGACTGAACGGAACAGCTAACCTGA--CA--TTTTATGTACCTGA----CAT----------TT----------------T-------------------------AT----------------A----TAT----TTTC-T--ACAAA---A-GT-ATTAACGCAATTTCCTTTGAACGTTTG-----AT-T---------CAAA---TATGAAA-GAA-CATTTAGGCTATATAA-AAT-----A-ATAA----AA-A-ATCAACACAGTTGATGTCAT----A--TATATATATATATATAGTCTTATA---C---TACTTC-TC----AATATactttgacccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtcaaatgaggcgagttagatgttcttttcagtat
gi|5 : ACTGAACGGAACAGCTTACCCGC--CA--T---------CTTA----CAT----------TT----------------T-------------------------ATGTACCTGACATT----T----TATAGTTTTTC-T--CAAAA---A-G------------TATTTTT-AAA-ATTTG-----GATT---------TAAA---TAAGAAA-AAAACATTTCGGCAATGCAA-AAT----TA-TTAG----AT-A-TTGTCTT---TTGATGTCGT----A--TATAAAT----------TTCAACA---A---TGCTT--TC----AATAATTT--GAC--G-AAGATA--------TTGGAAAA-------ACA--AAC------GA--GGCG---GGTTAGCTGCTCCGTTCAGTAatcgacataggaaactg
gi|5 : tACTGAACGGAGCAGCTAACCCGCCTCG--T---------TTGT----TTT----------TC----------------C-------------------------A-----------------A----TAT----CTTCGT--C-AAA---T-TA-TTGAAAGCATTG---TT-GAA-ATTTAT----ATAC---------GACA---TCA-AAA-GAC-AA-------TATCTAATAATTTTGCA-TTGCCGAAAT-G-TTTT------TT--TCTTATTTAAA--TCCAAAT----------TTTAAAA---A---TACTTT-TTGAGAAAAACTATAAAAT--GTCAGGTA--------CATAAAAT-------GTA--AGA-------T--GGCG---GGTAAGCTGTTCCGTTCAGTAta
gi|8 : ACTGAACGGAACAACTAACCCGC--CACTT---------TTG-----TAT----------TT----------------C-------------------------CA----------------A----TATC---TTTA-T--CAAAATATA-GA-TTT---GCTATG------AAA-AGTTGTACATGCCA---------TAAA---CA------GAC-------AGTTATGTA-------------CAT----GT-A-TTTTACA---TTA----CGT----C----CAAAT----------TTCAA-G---AAATTGCTTT-T------ATATTTT--TTT--G-A---------------GAAAAT-------ACATAAAATGTCGGGT--GGCG---GCTTAGCTGTTTCGTTCAGata
gi|6 : ACTGAACGGAACAGCTAACCCGC--CA--A---------CTGA----CAT----------TT----------------G-------------------------ATGTACCTGCAATTCTAAT----TAT----TTTC-TAACAAAA---A-GT-GTTAACGCAATTTCTAT-GAA-ATTTG-----GACT---------GGAA---TGAAAAA--------------------A-AAT----CA-ATAC----AT-------------TTGGTGTCGT----A--TATATCT----------TTTAATA---A---TACTAC-TT----AATCTATC--GAC--A-AAGATA--------TTGGAAAT-------ACA--AAA------GT--GGCG---GGTAAGCTGTTCCGTTCAGTAata
gi|6 : atACTGAACGGAACAGCTTACCCGC--CACTT---------TTG-----TAT----------TT----------------t
gi|1 : atactgaacggaacagctaacccgccaactgacatttgatgtacctgcaattctaattattttctaacaaaaagtgttaacgcaatttctatgaaatttggactggaatgaaaaaaaatcaatacatttggtgtcgtatatatcttttaataatactacttaatctatcgacaaagatattggACTGAACGGAACAGCTAACCTGC--CACTT---------TTG-----TAT----------TT----------------C-------------------------CG----------------G----TAT----TATCGT--TAAAA---at
gi|3 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgtaaagaatactgaacagaactgctaacccgccacctgacatttcatgtaactgacattttatgtattatctaaaaaaagtattaaagcaatttccttcaaattaggacttgagctagaaaaaacatttagaccatgtattgtcatatacaaactttaataaagctactccaacACTGAATGGAACAGCTAACCCAG--CA--C---------CTGACTTTTATGTGCCCAACATT----------------T-------------------------AT----------------G----TAT----TTTC-T--AAACA---A-AATATTGATGCAATTTCTTT-GAG-ATTTG-----AATTAAAAAATAATAAAGAATAAAAAAAGAA-TATTT-GGCTATGTAA-AAT----CA-AAAC----AT-ACTTGT-CAG--CTAATGTC--------------AC----------TCTATTA---G---CGCTAC-TC----GATAGTTT--AAC--A-AAGATA--------TTTGAAAT-------TCA--AAA------GT--GACT---GGTTAGCTGTTCCGTTCATTAat
gi|9 : tACTGAACGTAACAGCTAACCCGC--CA--C---------TT--------T----------TA----------------C-------------------------AT----------------T----T-T----TTTG-T--CAAAA---tat
gi|10 : gaaccgctaactgaccaagtattttatgtatttcctcaaaatttatcaaggacatttccttgaaatttgggttggaataagaaaaacactgctatgttaagccaatacataactgtctgtttacgtcgttgataacgctactcaataACGGAACGGAACCGTTAACTTGCCACA--T---------CCAA----TAT----------CT----------------T-------------------------ac
gi|11 : cgagctaacccgccacctgacattttatctattttctcaaacagtatcaaagcaacatccctgggtttagacttaaataagaaagaatactaagggaacatagaaaaatttcataattaatgaaatgggcacgctactcaatattttgacgACTGAACGTAACAGCTAACCCAA--CAC-T---------ATTG----TGT----------TT----------------T-------------------------A-----------------A----TAT----ATTCGT--CAAAA---
gi|12 : ataacaactacagtaactatgtaaaatcaatacataattatcttttcataccgcacctgcttgacaatactactcaataACTGAACGGAACAGCTAAACCAT--CA--C---------TT--------T----------TG----------------T-------------------------AT----------------TCCGGTAT----CTTC-ata
gi|16 : aaattgaaacaaaaacaaaattaaaaaaaaaagtttaaaaaaaaaaaaagaattttattaggctacttaataattcaacACTGAACGGGACAGCTAATCCGT--CA--C---------CTGA----CAT----------TT----------------T-------------------------Aataga
gi|14 : tatACTAAACGGAACAGCTTACCTGT--CA--C---------TTGA----AAT----------TT----------------C-------------------------AT----------------G----TAT----TTcatg
gi|13 : ACTGAACGGAACAGCCAGTCAGT--CA--C---------CTGA----CAT----------TC----------------C-------------------------AT----------------G----TAata
gi|8 : tCTGAACGAAACAGCTAAGCCGC--CA--C---------CCGA----CAT----------TT----------------T-------------------------AT----------------G----TAT----TTTC-T--CAAAA---A-AATATAAAAGCAAT-TTCTT-GAA-ATTTG-----GACG---------TAA---------------------------TGTAA-AATA---CATGTAC----AT-AACTGTCTG---TTTATGGCAT----G--TACAACT----------TTTCATA---G---CAAATC-T------ATATTTT--GAT--A-AAGATA--------TTGGAAAT-------ACA--AAA------GT--GGCG---GGTTAGTTGTTCCGTTCAGTAcctgacataaatatacatactt
gi|3 : TGAACGGAACAGCTAACCAGT--CACTT---------TTGA-----AT----------TT----------------C-------------------------AA----------------A----TATC---TTTG-T--TAAAta
gi|9 : tactgaatggaacagctaacccagcacctgacttttatgtgcccaacatttatgtattttctaaacaaaatattgatgcaatttctttgagatttgaattaaaaaataataaagaataaaaaaagaatatttggctatgtaaaatcaaaacatacttgtcagctaatgtcactctattagcgctactcgatagGAACCGCTAACTGAC--CA--------------AG----TAT----------TT----------------T-------------------------AT----------------G----TAT----TTCC-T--CAAAA---T-TT-ATCAAGGACATTTCCTT-GAA-ATTTG-----GGTT---------GGAA---TAAGAAA-AA--CACT---GCTATGTTA-AGC----CA-ATAC----ATAA-CTGTCTG---TTTACGTCG--------------------------TTGATA---A---CGCTAC-TC----AATATTTT--GAC--A-AA---------------AAAAT-------GTA--AAA------GT--GGCG---GGTTAGCTGTTACGTTCAGTAttatat
gi|10 : AGCTAACCCGC--CA--C---------CTGA----CAT----------TT----------------T-------------------------AT----------------C----TAT----TTTC-T--CAAAC---A-GT-ATCAAAGCAACATCCCT-G-G-GTTTA-----GACT---------TAAA---TAAGAAA-GAA-TACTAAGGGAACATAG-AA------A-A-------AT-T-TCATA-A---TTAAT---------------GA---------------AATGGGCA---CGCTAC-TC----AATATTTT--GAC--G-AAGATA--------TTGG--AT---------------------GT--GGCA---AGTTAACGGTTCCGTTCCGTc
gi|11 : cgCTATGTAA-AAT----CA-ATAC----AT-AATTATCTT---TTCATACCGC----ACCTGC---------------TTGACA---A---TACTAC-TC----AATATTTT--GAC--G-AATATA--------TTA-AAAC-------ACA--ATA------GT--GTTG---GGTTAGCTGTTACGTTCAGTA
gi|3 : ataacaactacagtaa----A--TTCAAAT----------CTCAAAG---A---AATTGCATC----AATATTTT--GTTTAG-AAAATACATAAATGTTGGGCAC-------ATA--AAA------GTCAGGTGCTGGGTTAGCTGTTCCATTCAGTAta
gi|12 : AAT----------TTTA-TT---A---GGCTAC-TT----AATAATTC--AAC--G-AAGATA--------CCGGAA-T-------ACA--AAA------GT--GATG---GTTTAGCTGTTCCGTTCAGTAtaaaaaataataaagaataaaaaaagaatatttggctatgtaaaatcaaaacatacttgtcagctaatgtcactctattagcgctactcgatagtttaacaaagatatttgaaattcaaaagtgactggttagctgttccgttcattatat
gi|7 : aaattgaaacaaaaacaaaattaaaaaaaaaagtttaaaaaaaaaaaaag-TT----AATACTTT--TGTA-G-AAAATA--------TATAAAATGTCAGGTACAT-AAA------AT--GTCA---GGTTAGCTGTTCCGTTCAGTtaga
gi|2 : tattgCA--AAT------GA--GGCG---AGTTAGATGTTCTTTTCAGTAcgcaatttcctttgaacgtttgattcaaatatgaaagaacatttaggctatataaaataataaaaaatcaacacagttgatgtcatatatatatatatatatagtcttatactacttctcaatatatcgacataggaaactg
gi|1 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttaaatatactaaacagctaacacgccacctgatattttgggttaaacttttaccagacatgttatgtatttactcgaaaggatatcgaagcaatatctaaaatgtggatttgaataagaatgaactttgacccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtAG------GT--GGCG---GGTTAGCAGTTCTGTTCAGTAt
gi|16 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgtaaagaaAG------GT--GACG---GATTAGCTGTCCCGTTCAGTAgacatttcatgtaactgacattttatgtattatctaaaaaaagtattaaagcaatttccttcaaattaggacttgagctagaaaaaacatttagaccatgtattgtcatatacaaactttaataaagctactccaacttttaacgataataccggaaatacaaaagtggcaggttagctgttccgttcagtat
gi|14 : taAA------GT--GACA---GGTAAGCTGTTCCGTTTAGTAgacattttacatg
gi|13 : aaatacatgaaatttcAG------GT--GACT---GACTGGCTGTTCCGTTCAGTAta
gi|6 : T--GGCG---GGTTAGCTGTTCCGTTCAGTAgacattccatgtacctgacataaatatacatactt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TATTAGTAATCGTAAAGTAATAAGTTGTGTTAGTATAGGAGAGAA
Alignments
lowQualScore : 3333333333333333 33333333333333333333333333333333333333333333333333333333 2222222222222222 11111111111111 111 444444444444444 3333333333333333333333
lowQualScore : 0 0 55 2222222222222222 99999999999999999999999999999999999999999999999999999999 3 2222222222222222 55 4 4 999 2 2 4 4 77777777777777 4 5 4 0 999 3 2 55 44 444444444444444 4 1111111111111111111111 66 1 0 0 0
lowQualScore : . . .. ................ ........................................................ . ................ .. . . ... . . . . .............. . . . . ... . . .. .. ............... . ...................... .. . . . .
lowQualScore : 7 8 55 7777777777777777 22222222222222222222222222222222222222222222222222222222 3 1111111111111111 55 0 0 000 3 4 8 0 33333333333333 0 7 0 7 333 6 5 66 11 555555555555555 9 1111111111111111111111 77 0 4 5 4
consensus : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCCA----------------CCTGAC----------------AT----------TTT-------------------------AT-GTA----------------TTTTCT--CAA-AAA-G-T-ATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT----------TTTAATAACGCTACTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
Reference ( family-37 ) : TAAAGATAT--ACTGAACGGAACAGCTAACCCGCCA----------------CCTGAC----------------AT----------TTT-------------------------AT-GTA----------------TTTTCT--CAA-AAA-G-N-ATTAAAGCAATNTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT----------TTTAATAACGCTNCTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
gi|1 : TAAAGA-AT--ACTGAACAGAACTGCTAACCCGCCA----------------CCTGACATTTCATGTAACTGACAT----------TTT-------------------------AT-GTA----------------TTATCT--AAA-AAAAG-T-ATTAAAGCAATTTCCTT-CAAATTAGGACT------TG------AGC-TAGAAAAAA-CATT-T-AGACCATGTA------------------------------T--TGTCATA--TACAAAC----------TTTAATAAAGCTACTCCAACTTTTAACGATAATACCGGAAATACAAAAGTGGCAGGTTAGCTGTTCCGTTCAGTA
gi|10 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgAGCTAACCCGCCA----------------CCTGAC----------------AT----------TTT-------------------------AT-CTA----------------TTTTCT--CAA-ACA-G-T-ATCAAAGCAACATCCCT-G-GGTTTAGACT------TA------AAT-AAGAAAGAA-TACTAA-GG-GAACATAGAAA-AA-TTTCAT-A------------ATTAATG----------AAA-------------TGGGCACGCTACTCAATATTTTGACGAAGATATTGG--AT------GTGGCAAGTTAACGGTTCCGTTCCGTt
gi|11 : cg-CTATGTAAAAT-CA-ATACAT-AATTATC----T-TTTCATACCGCACCTGC---------------TTGACAATACTACTCAATATTTTGACGAATATATTA-AAACACAATAGTGTTGGGTTAGCTGTTACGTTCAGTA
gi|12 : ataacaactacagtaaAAT----------TTTATTAG-GCTACTTAATAATTCAACGAAGATACCGGAA-TACAAAAGTGATGGTTTAGCTGTTCCGTTCAGTAta
gi|13 : aaattgaaacaaaaacaaaattaaaaaaaaaagtttaaaaaaaaaaaaagT--ACTGAACGGAACAGCCAGTCAGTCA----------------CCTGAC----------------AT----------TCC-------------------------AT-GTA----------------taga
gi|14 : TAT--ACTAAACGGAACAGCTTACCTGTCA----------------CTTGAA----------------AT----------TTC-------------------------AT-GTA----------------TTTcctgacataaatatacatactt
gi|16 : TAT--ACTGAACGGGACAGCTAATCCGTCA----------------CCTGAC----------------AT----------TTT-------------------------A
gi|2 : AAATAT--ACTAAAC-----AGCTAACACGCCA----------------CCTGAT----------------AT----------TTTGGGTTAAACTTTTACCAGACATGTTAT-GTA----------------TTTACT--CGA-AAG-GAT-ATCGAAGCAATATC--T-AAAATGTGGATT------TG------AAT-AAGAATGAA-C-TT-T-GA-Ccatg
gi|2 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttCAAATGAGGCGAGTTAGATGTTCTTTTCAGTAccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtcaaatgaggcgagttagatgttcttttcagtat
gi|3 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttaaatatactaaacagctaacacgccacctgatattttgggttaaacttttaccagacatgttatgtatttactcgaaaggatatcgaagcaatatctaaaatgtggatttgaataagaatgaactttgacccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtT--ACTGAATGGAACAGCTAACCCAGCA----------------CCTGACTTTT------------ATGTGCCCAACATTT-------------------------AT-GTA----------------TTTTCT--AAACAAA-A-T-ATTGATGCAATTTCTTT-GAGATTTGAATTAAAAAATAATAAAGAATAAAAAAAGAA-TATT-T-GG-CTATGTAAAAT-CA-AAACAT-ACTTGTC----A-GCTAATGTC----------AC----------TCTATTAGCGCTACTCGATAGTTTAACAAAGATATTTGAAATTCAAAAGTGACTGGTTAGCTGTTCCGTTCATTAt
gi|4 : TAAAAATATTCACTGAACGGAACAGCTAACCCGCCA----------------TCTGAT----------------AT----------TTT-------------------------AT-TTA----------------TTTTCT--CAA-AAA-G-A-ATCAAAGCAATGTCCTT-GAAATTTGGTCT------TA------AAT-AAGAAAGAC-CATT-TAGG-CTATGTAAAAT-CA-ATACAT-A-TTGTA----C-ATTAATCTCGTA--TACAAAT----------TTTAATGATGCTTCTCAATATTTTAATGAAGATATTGGAAATACAAAAGTGGCGGATTAGCTGTTCCTTTCAGTAtat
gi|5 : T--ACTGAACGGAACAGCTTACCCGCCATCTTACATTTTATGTACCTGAC----------------AT----------TTT-------------------------ATAGT-----------------TTTTCT--CAA-AAA-G-T-ATT-----------TTT-AAAATTTGGATT------TA------AAT-AAGAAAAAAACATT-TCGG-CAATGCAAAAT-TA-TTAGAT-A-TTGTC----T-TTTGATGTCGTA--TATAAAT----------TTCAACAATGCTT-TCAATAATTTGACGAAGATATTGGAAAAACAAACGAGGCGGGTTAGCTGCTCCGTTCAGTA
gi|6 : AT--ACTGAACGGAACAGCTAACCCGCCA----------------ACTGAC----------------AT----------TTG-------------------------AT-GTACCTGCAATTCTAATTATTTTCTAACAA-AAA-G-T-GTTAACGCAATTTCTAT-GAAATTTGGACT------GG------AAT-GAAAAA---------------------AAAT-CA-ATACAT---------------TTGGTGTCGTA--TATATCT----------TTTAATAATACTACTTAATCTATCGACAAAGATATTGGAAATACAAAAGTGGCGGGTAAGCTGTTCCGTTCAGTAta
gi|7 : --ACTGAACGGAACAGCTAACCTGACATTTTATGTA-------CCTGAC----------------AT----------TTT-------------------------AT-ATA----------------TTTTCT--ACA-AAA-G-T-ATTAACGCAATTTCCTTTGAACGTTTGATT------CA------AAT-ATGAAAGAA-CATT-TAGG-CTATATAAAAT--A-ATAAAA-A---ATCAACACAGTTGATGTCATA--TATATATATATATATAGTCTTATACTACTTCTCAATATATCGAC----ATA--GGAAAt
gi|8 : tattgCTGAACGAAACAGCTAAGCCGCCA----------------CCCGAC----------------AT----------TTT-------------------------AT-GTA----------------TTTTCT--CAA-AAA-A-ATATAAAAGCAATTTC-TT-GAAATTTGGACG------TA------A--------------------------TGTAAAATACATGTACAT-AACTGTC----T-GTTTATGGCATG--TACAACT----------TTTCATA--GCAAATCTATATTTTGATAAAGATATTGGAAATACAAAAGTGGCGGGTTAGTTGTTCCGTTCAGTActg
gi|9 : CCGCTA----------------ACTGACCAAGT-----------AT----------TTT-------------------------AT-GTA----------------TTTCCT--CAA-AAT-T-T-ATCAAGGACATTTCCTT-GAAATTTGGGTT------GG------AAT-AAGAAA-AA-CACT----G-CTATGTTAAGC-CA-ATACATAA-CTGTC----T-GTTTACGTCG----------------------TTGATAACGCTACTCAATATTTTGACAAA-------AAAATGTAAAAGTGGCGGGTTAGCTGTTACGTTCAGTAta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATTAGTAATCGTAAAGTAATAAGTTGTGTTAGTATAGGAGAGAA
Alignments
lowQualScore : 555555555555555555555555555555555555555555 3333333333333333 1111111111 2222222222222222 11111111111111 111 444444444444444 1111111111111 1111111
lowQualScore : 0 55 444444444444444444444444444444444444444444 4444444444444444 3333333333 3 2222222222222222 55 4 4 8 3 2 5 4 77777777777777 4 5 4 0 999 3 2 55 44 444444444444444 4 8888888888888 3 3333333 666 0 0 0
lowQualScore : . .. .......................................... ................ .......... . ................ .. . . . . . . . .............. . . . . ... . . .. .. ............... . ............. . ....... ... . . .
lowQualScore : 8 55 555555555555555555555555555555555555555555 6666666666666666 5555555555 3 1111111111111111 55 0 0 0 9 3 7 0 33333333333333 0 7 0 7 333 6 5 66 11 555555555555555 9 8888888888888 6 6666666 444 4 5 4
consensus : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
Reference ( family-37 ) : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
gi|1 : TAAAGA-AT--ACTGAACAGAACTGCTAACCCGCC-------------------------A----------------CCTGACATTTCATGTAACTGACAT----------TTTAT-GTA----------------TTATCT--AAA-AAAAG-TATTAAAGCAATTTCCTT-CAAATTAGGACT------TG------AGC-TAGAAAAAA-CATT-T-AGACCATGTA------------------------------T--TGTCATA--TACAAAC-TTTA-ATA-----AAGCTA---CTCCAACTTTTAACGATAATACCGGAAATACAAAAGTGGCAGGTTAGCTGTTCCGTTCAGTA
gi|10 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-CTA----------------TTTTCT--CAA-ACA-G-TATCAAAGCAACATCCCT-G-GGTTTAGACT------TA------AAT-AAGAAAGAA-TACTAA-GG-GAACATAGAAA-AA-TTTCAT-A------------ATTAATG----------AAA----TG-GGC-----ACGCTA---CTCAATATTTTGACGAAGATATTGG--AT------GTGGCAAGTTAACGGTTCCGTTCCGTt
gi|11 : cg-CTATGTAAAAT-CA-ATACAT-AATTATC----T-TTTCATACCGCACCTGC------TTG-ACA-----ATACTA---CTCAATATTTTGACGAATATATT-AAAACACAATAGTGTTGGGTTAGCTGTTACGTTCAGTA
gi|12 : ataacaactacagtaaAAT-TTTA-TTA-----G-GCTA---CTTAATAATTCAACGAAGATACCGGAA-TACAAAAGTGATGGTTTAGCTGTTCCGTTCAGTAta
gi|13 : aaattgaaacaaaaacaaaattaaaaaaaaaagtttaaaaaaaaaaaaagT--ACTGAACGGAACAGCCAGTCAGTC-------------------------A----------------CCTGAC----------------AT----------TCCAT-GTA----------------taga
gi|14 : TAT--ACTAAACGGAACAGCTTACCTGTC-------------------------A----------------CTTGAA----------------AT----------TTCAT-GTA----------------TTTcctgacataaatatacatactt
gi|16 : TAT--ACTGAACGGGACAGCTAATCCGTC-------------------------A----------------CCTGAC----------------AT----------TTTA
gi|2 : AAATAT--ACTAAAC-----AGCTAACACGCCACCTGATATTTTGGGTTAAACTTTTA----------------CCAGAC----------------AT----------GTTAT-GTA----------------TTTACT--CGA-AAG-GATATCGAAGCAATATC--T-AAAATGTGGATT------TG------AAT-AAGAATGAA-C-TT-T-GA-Ccatg
gi|2 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttCAAATGAGGCGAGTTAGATGTTCTTTTCAGTAccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtcaaatgaggcgagttagatgttcttttcagtat
gi|3 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttaaatatactaaacagctaacacgccacctgatattttgggttaaacttttaccagacatgttatgtatttactcgaaaggatatcgaagcaatatctaaaatgtggatttgaataagaatgaactttgacccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtT--ACTGAATGGAACAGCTAACCCAGC-------------------------A----------------CCTGACTTTT------------ATGTGCCCAACATTTAT-GTA----------------TTTTCT--AAACAAA-A-TATTGATGCAATTTCTTT-GAGATTTGAATTAAAAAATAATAAAGAATAAAAAAAGAA-TATT-T-GG-CTATGTAAAAT-CA-AAACAT-ACTTGTC----A-GCTAATGTC----------AC-TCTA-TTA-----GCGCTA---CTCGATAGTTTAACAAAGATATTTGAAATTCAAAAGTGACTGGTTAGCTGTTCCGTTCATTAt
gi|4 : TAAAAATATTCACTGAACGGAACAGCTAACCCGCC-------------------------A----------------TCTGAT----------------AT----------TTTAT-TTA----------------TTTTCT--CAA-AAA-G-AATCAAAGCAATGTCCTT-GAAATTTGGTCT------TA------AAT-AAGAAAGAC-CATT-TAGG-CTATGTAAAAT-CA-ATACAT-A-TTGTA----C-ATTAATCTCGTA--TACAAAT-TTTA-ATG-----ATGCTT---CTCAATATTTTAATGAAGATATTGGAAATACAAAAGTGGCGGATTAGCTGTTCCTTTCAGTAtat
gi|5 : T--ACTGAACGGAACAGCTTACCCGCC-------------------------ATCTTACATTTTATGTACCTGAC----------------AT----------TTTATAGT-----------------TTTTCT--CAA-AAA-G-TAT---------TT--TT-AAAATTTGGATT------TA------AAT-AAGAAAAAAACATT-TCGG-CAATGCAAAAT-TA-TTAGAT-A-TTGTC----T-TTTGATGTCGTA--TATAAAT-TTCA-ACA-----ATGCT----TTCAATAATTTGACGAAGATATTGGAAAAACAAACGAGGCGGGTTAGCTGCTCCGTTCAGTA
gi|6 : AT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------ACTGAC----------------AT----------TTGAT-GTACCTGCAATTCTAATTATTTTCTAACAA-AAA-G-TGTTAACGCAATTTCTAT-GAAATTTGGACT------GG------AAT-GAAAAA---------------------AAAT-CA-ATACAT---------------TTGGTGTCGTA--TATATCT-TTTA-ATA-----ATACTA---CTTAATCTATCGACAAAGATATTGGAAATACAAAAGTGGCGGGTAAGCTGTTCCGTTCAGTAta
gi|7 : --ACTGAACGGAACAGCTAACCTGAC-------------------------ATTTTATGTA-------CCTGAC----------------AT----------TTTAT-ATA----------------TTTTCT--ACA-AAA-G-TATTAACGCAATTTCCTTTGAACGTTTGATT------CA------AAT-ATGAAAGAA-CATT-TAGG-CTATATAAAAT--A-ATAAAA-A---ATCAACACAGTTGATGTCATA--TATATATATATATATAGTCTTATACTACTTCTCAATATATCGAC----ATA--GGAAAt
gi|8 : tattgCTGAACGAAACAGCTAAGCCGCC-------------------------A----------------CCCGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-AATATAAAAGCAATTTC-TT-GAAATTTGGACG------TA------A--------------------------TGTAAAATACATGTACAT-AACTGTC----T-GTTTATGGCATG--TACAACT-TTTC-ATA-------GCAA---ATCTATATTTTGATAAAGATATTGGAAATACAAAAGTGGCGGGTTAGTTGTTCCGTTCAGTActg
gi|9 : CCGCT-------------------------A----------------ACTGACCAAGT-----------AT----------TTTAT-GTA----------------TTTCCT--CAA-AAT-T-TATCAAGGACATTTCCTT-GAAATTTGGGTT------GG------AAT-AAGAAA-AA-CACT----G-CTATGTTAAGC-CA-ATACATAA-CTGTC----T-GTTTACGTCG-------------TTG-ATA-----ACGCTA---CTCAATATTTTGACAAA-------AAAATGTAAAAGTGGCGGGTTAGCTGTTACGTTCAGTAta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATTAGTAATCGTAAAGTAATAAGTTGTGTTAGTATAGGAGAGAA
Alignments
lowQualScore : 555555555555555555555555555555555555555555 3333333333333333 1111111111 2222222222222222 11111111111111 111 444444444444444 1111111111111 1111111
lowQualScore : 0 55 444444444444444444444444444444444444444444 4444444444444444 3333333333 3 2222222222222222 55 4 4 8 3 2 5 4 77777777777777 4 5 4 0 999 3 2 55 44 444444444444444 4 8888888888888 3 3333333 666 0 0 0
lowQualScore : . .. .......................................... ................ .......... . ................ .. . . . . . . . .............. . . . . ... . . .. .. ............... . ............. . ....... ... . . .
lowQualScore : 8 55 555555555555555555555555555555555555555555 6666666666666666 5555555555 3 1111111111111111 55 0 0 0 9 3 7 0 33333333333333 0 7 0 7 333 6 5 66 11 555555555555555 9 8888888888888 6 6666666 444 4 5 4
consensus : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
Reference ( family-37 ) : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
gi|1 : TAAAGA-AT--ACTGAACAGAACTGCTAACCCGCC-------------------------A----------------CCTGACATTTCATGTAACTGACAT----------TTTAT-GTA----------------TTATCT--AAA-AAAAG-TATTAAAGCAATTTCCTT-CAAATTAGGACT------TG------AGC-TAGAAAAAA-CATT-T-AGACCATGTA------------------------------T--TGTCATA--TACAAAC-TTTA-ATA-----AAGCTA---CTCCAACTTTTAACGATAATACCGGAAATACAAAAGTGGCAGGTTAGCTGTTCCGTTCAGTA
gi|10 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-CTA----------------TTTTCT--CAA-ACA-G-TATCAAAGCAACATCCCT-G-GGTTTAGACT------TA------AAT-AAGAAAGAA-TACTAA-GG-GAACATAGAAA-AA-TTTCAT-A------------ATTAATG----------AAA----TG-GGC-----ACGCTA---CTCAATATTTTGACGAAGATATTGG--AT------GTGGCAAGTTAACGGTTCCGTTCCGTt
gi|11 : cg-CTATGTAAAAT-CA-ATACAT-AATTATC----T-TTTCATACCGCACCTGC------TTG-ACA-----ATACTA---CTCAATATTTTGACGAATATATT-AAAACACAATAGTGTTGGGTTAGCTGTTACGTTCAGTA
gi|12 : ataacaactacagtaaAAT-TTTA-TTA-----G-GCTA---CTTAATAATTCAACGAAGATACCGGAA-TACAAAAGTGATGGTTTAGCTGTTCCGTTCAGTAta
gi|13 : aaattgaaacaaaaacaaaattaaaaaaaaaagtttaaaaaaaaaaaaagT--ACTGAACGGAACAGCCAGTCAGTC-------------------------A----------------CCTGAC----------------AT----------TCCAT-GTA----------------taga
gi|14 : TAT--ACTAAACGGAACAGCTTACCTGTC-------------------------A----------------CTTGAA----------------AT----------TTCAT-GTA----------------TTTcctgacataaatatacatactt
gi|16 : TAT--ACTGAACGGGACAGCTAATCCGTC-------------------------A----------------CCTGAC----------------AT----------TTTA
gi|2 : AAATAT--ACTAAAC-----AGCTAACACGCCACCTGATATTTTGGGTTAAACTTTTA----------------CCAGAC----------------AT----------GTTAT-GTA----------------TTTACT--CGA-AAG-GATATCGAAGCAATATC--T-AAAATGTGGATT------TG------AAT-AAGAATGAA-C-TT-T-GA-Ccatg
gi|2 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttCAAATGAGGCGAGTTAGATGTTCTTTTCAGTAccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtcaaatgaggcgagttagatgttcttttcagtat
gi|3 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttaaatatactaaacagctaacacgccacctgatattttgggttaaacttttaccagacatgttatgtatttactcgaaaggatatcgaagcaatatctaaaatgtggatttgaataagaatgaactttgacccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtT--ACTGAATGGAACAGCTAACCCAGC-------------------------A----------------CCTGACTTTT------------ATGTGCCCAACATTTAT-GTA----------------TTTTCT--AAACAAA-A-TATTGATGCAATTTCTTT-GAGATTTGAATTAAAAAATAATAAAGAATAAAAAAAGAA-TATT-T-GG-CTATGTAAAAT-CA-AAACAT-ACTTGTC----A-GCTAATGTC----------AC-TCTA-TTA-----GCGCTA---CTCGATAGTTTAACAAAGATATTTGAAATTCAAAAGTGACTGGTTAGCTGTTCCGTTCATTAt
gi|4 : TAAAAATATTCACTGAACGGAACAGCTAACCCGCC-------------------------A----------------TCTGAT----------------AT----------TTTAT-TTA----------------TTTTCT--CAA-AAA-G-AATCAAAGCAATGTCCTT-GAAATTTGGTCT------TA------AAT-AAGAAAGAC-CATT-TAGG-CTATGTAAAAT-CA-ATACAT-A-TTGTA----C-ATTAATCTCGTA--TACAAAT-TTTA-ATG-----ATGCTT---CTCAATATTTTAATGAAGATATTGGAAATACAAAAGTGGCGGATTAGCTGTTCCTTTCAGTAtat
gi|5 : T--ACTGAACGGAACAGCTTACCCGCC-------------------------ATCTTACATTTTATGTACCTGAC----------------AT----------TTTATAGT-----------------TTTTCT--CAA-AAA-G-TAT---------TT--TT-AAAATTTGGATT------TA------AAT-AAGAAAAAAACATT-TCGG-CAATGCAAAAT-TA-TTAGAT-A-TTGTC----T-TTTGATGTCGTA--TATAAAT-TTCA-ACA-----ATGCT----TTCAATAATTTGACGAAGATATTGGAAAAACAAACGAGGCGGGTTAGCTGCTCCGTTCAGTA
gi|6 : AT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------ACTGAC----------------AT----------TTGAT-GTACCTGCAATTCTAATTATTTTCTAACAA-AAA-G-TGTTAACGCAATTTCTAT-GAAATTTGGACT------GG------AAT-GAAAAA---------------------AAAT-CA-ATACAT---------------TTGGTGTCGTA--TATATCT-TTTA-ATA-----ATACTA---CTTAATCTATCGACAAAGATATTGGAAATACAAAAGTGGCGGGTAAGCTGTTCCGTTCAGTAta
gi|7 : --ACTGAACGGAACAGCTAACCTGAC-------------------------ATTTTATGTA-------CCTGAC----------------AT----------TTTAT-ATA----------------TTTTCT--ACA-AAA-G-TATTAACGCAATTTCCTTTGAACGTTTGATT------CA------AAT-ATGAAAGAA-CATT-TAGG-CTATATAAAAT--A-ATAAAA-A---ATCAACACAGTTGATGTCATA--TATATATATATATATAGTCTTATACTACTTCTCAATATATCGAC----ATA--GGAAAt
gi|8 : tattgCTGAACGAAACAGCTAAGCCGCC-------------------------A----------------CCCGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-AATATAAAAGCAATTTC-TT-GAAATTTGGACG------TA------A--------------------------TGTAAAATACATGTACAT-AACTGTC----T-GTTTATGGCATG--TACAACT-TTTC-ATA-------GCAA---ATCTATATTTTGATAAAGATATTGGAAATACAAAAGTGGCGGGTTAGTTGTTCCGTTCAGTActg
gi|9 : CCGCT-------------------------A----------------ACTGACCAAGT-----------AT----------TTTAT-GTA----------------TTTCCT--CAA-AAT-T-TATCAAGGACATTTCCTT-GAAATTTGGGTT------GG------AAT-AAGAAA-AA-CACT----G-CTATGTTAAGC-CA-ATACATAA-CTGTC----T-GTTTACGTCG-------------TTG-ATA-----ACGCTA---CTCAATATTTTGACAAA-------AAAATGTAAAAGTGGCGGGTTAGCTGTTACGTTCAGTAta
blockSeqs : TC ACCTGATATTTTGGGTTAAACTTTTA CAAGT GTGCCCAACA A CCTGCAATTCTAATTA AA C . A C A C T AAAAAATAATAAAG A G A AA . A AC TG AATCAACACAG A ATATATATATA T GTCTTAT CTT
blockSeqs : . ATCTTACATTTTATGTA TTTT . . . . . . A C A T . TA . G . TA . T A T AATTATCTT C GTATACAAAT . AC .
blockSeqs : . ATTTTATGTA . . . . . . . . T T C . TG . G . TC . T C A ACTTGTCAG A GTATATAAAT . AT .
blockSeqs : . A . . . . . . . . C A T . TA . G . TA . T C A AACTGTCTG A GTATATATCT . GC .
blockSeqs : . A . . . . . . . . T C C . TA . A . T . A C A AACTGTCTG G ATGTACAACT . AT .
blockSeqs : . A . . . . . . . . T C C . GG . G . T . T T T ATTGTACA G GCACCTGC . AT .
blockSeqs : . A . . . . . . . . A A . . CA . . . . . T C A ATTGTCTT G AAA . AT .
blockSeqs : . A . . . . . . . . C G . . TA . . . . . . C A AA T AC . AC .
blockSeqs : . A . . . . . . . . . . . . GG . . . . . . . A . T G . G .
blockSeqs : A . . . . . . . .
blockSeqs : A . . . .
blockSeqs : A . .
blockSeqCons : **************** T** C* A* AATTGTCCG******
originalCons : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACAT-A-TTGTC----C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
finalCons : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCCTT-GAAATTTGGACT------TA------AAT-AAGAAAGAA-CATTT--GG-CTATGTAAAATC-AA-TACATAATTGTCCG------TTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATTAGTAATCGTAAAGTAATAAGTTGTGTTAGTATAGGAGAGAA
Alignments
lowQualScore : 555555555555555555555555555555555555555555 3333333333333333 1111111111 2222222222222222 11111111111111 111 2222 1111111111111 1111111
lowQualScore : 0 55 444444444444444444444444444444444444444444 4444444444444444 3333333333 3 2222222222222222 55 4 4 8 3 2 99 77777777777777 4 5 4 0 999 3 2 0 55 44 555 1111 2 2 8888888888888 3 3333333 666 0 0 0
lowQualScore : . .. .......................................... ................ .......... . ................ .. . . . . . .. .............. . . . . ... . . . .. .. ... .... . . ............. . ....... ... . . .
lowQualScore : 8 55 555555555555555555555555555555555555555555 6666666666666666 5555555555 3 1111111111111111 55 0 0 0 9 3 77 33333333333333 0 7 0 7 333 6 5 9 66 11 222 0000 4 2 8888888888888 6 6666666 444 4 5 4
consensus : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCC-TTGAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACATAATTGTC-C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
Reference ( family-37 ) : TAAAAATAT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-G-TATCAAAGCAATTTCC-TTGAAATTTGGACT------TA------AAT-AAGAAAGAA-CATT-T-GG-CTATGTAAAAT-CA-ATACATAATTGTC-C-GTTNATGTCGTA--TACAAAT-TTTA-ATA-----ACGCTA---CTCAATATTTTGACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTA
gi|1 : TAAAGA-AT--ACTGAACAGAACTGCTAACCCGCC-------------------------A----------------CCTGACATTTCATGTAACTGACAT----------TTTAT-GTA----------------TTATCT--AAA-AAAAG-TATTAAAGCAATTTCC-TTCAAATTAGGACT------TG------AGC-TAGAAAAAA-CATT-T-AGACCATGT----------------ATTGTC------------ATA--TACAAAC-TTTA-ATA-----AAGCTA---CTCCAACTTTTAACGATAATACCGGAAATACAAAAGTGGCAGGTTAGCTGTTCCGTTCAGTA
gi|10 : ttttttctatctttgttagacattaatgaatcacatgtactgtaatattgatacggaaaaaataagtattattcagcttgAGCTAACCCGCC-------------------------A----------------CCTGAC----------------AT----------TTTAT-CTA----------------TTTTCT--CAA-ACA-G-TATCAAAGCAACATCC-CTG-GGTTTAGACT------TA------AAT-AAGAAAGAA-TACTAA-GG-GAACATAGAAA-AA-TTTCATAA---------TTAATG----------AAA----TG-GGC-----ACGCTA---CTCAATATTTTGACGAAGATATTGG--AT------GTGGCAAGTTAACGGTTCCGTTCCGTt
gi|11 : cg-CTATGTAAAAT-CA-ATACATAATTATC-T-TTTCATACCGCACCTGC------TTG-ACA-----ATACTA---CTCAATATTTTGACGAATATATT-AAAACACAATAGTGTTGGGTTAGCTGTTACGTTCAGTA
gi|12 : ataacaactacagtaaAAT-TTTA-TTA-----G-GCTA---CTTAATAATTCAACGAAGATACCGGAA-TACAAAAGTGATGGTTTAGCTGTTCCGTTCAGTAta
gi|13 : aaattgaaacaaaaacaaaattaaaaaaaaaagtttaaaaaaaaaaaaagT--ACTGAACGGAACAGCCAGTCAGTC-------------------------A----------------CCTGAC----------------AT----------TCCAT-GTA----------------taga
gi|14 : TAT--ACTAAACGGAACAGCTTACCTGTC-------------------------A----------------CTTGAA----------------AT----------TTCAT-GTA----------------TTTcctgacataaatatacatactt
gi|16 : TAT--ACTGAACGGGACAGCTAATCCGTC-------------------------A----------------CCTGAC----------------AT----------TTTA
gi|2 : AAATAT--ACTAAAC-----AGCTAACACGCCACCTGATATTTTGGGTTAAACTTTTA----------------CCAGAC----------------AT----------GTTAT-GTA----------------TTTACT--CGA-AAG-GATATCGAAGCAATATC---TAAAATGTGGATT------TG------AAT-AAGAATGAA-C-TT-T-GA-Ccatg
gi|2 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttCAAATGAGGCGAGTTAGATGTTCTTTTCAGTAccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtcaaatgaggcgagttagatgttcttttcagtat
gi|3 : ttttttcttctttgtctttaaaacattgctactagaacgatgtgaaagaattcagtagattttatttgatatatcatatttttaaatatactaaacagctaacacgccacctgatattttgggttaaacttttaccagacatgttatgtatttactcgaaaggatatcgaagcaatatctaaaatgtggatttgaataagaatgaactttgacccgagtcttcattattaaatttgacagtaattgtaaaagttttttcacgatagtT--ACTGAATGGAACAGCTAACCCAGC-------------------------A----------------CCTGACTTTT------------ATGTGCCCAACATTTAT-GTA----------------TTTTCT--AAACAAA-A-TATTGATGCAATTTCT-TTGAGATTTGAATTAAAAAATAATAAAGAATAAAAAAAGAA-TATT-T-GG-CTATGTAAAAT-CA-AAACATACTTGTC-A-GCTAATGTC----------AC-TCTA-TTA-----GCGCTA---CTCGATAGTTTAACAAAGATATTTGAAATTCAAAAGTGACTGGTTAGCTGTTCCGTTCATTAt
gi|4 : TAAAAATATTCACTGAACGGAACAGCTAACCCGCC-------------------------A----------------TCTGAT----------------AT----------TTTAT-TTA----------------TTTTCT--CAA-AAA-G-AATCAAAGCAATGTCC-TTGAAATTTGGTCT------TA------AAT-AAGAAAGAC-CATT-TAGG-CTATGTAAAAT-CA-ATACAT-ATTGTA-C-ATTAATCTCGTA--TACAAAT-TTTA-ATG-----ATGCTT---CTCAATATTTTAATGAAGATATTGGAAATACAAAAGTGGCGGATTAGCTGTTCCTTTCAGTAtat
gi|5 : T--ACTGAACGGAACAGCTTACCCGCC-------------------------ATCTTACATTTTATGTACCTGAC----------------AT----------TTTATAGT-----------------TTTTCT--CAA-AAA-G-TAT---------TT---TTAAAATTTGGATT------TA------AAT-AAGAAAAAAACATT-TCGG-CAATGCAAAAT-TA-TTAGATA-TTGTC-T-TTTGATGTCGTA--TATAAAT-TTCA-ACA-----ATGCT----TTCAATAATTTGACGAAGATATTGGAAAAACAAACGAGGCGGGTTAGCTGCTCCGTTCAGTA
gi|6 : AT--ACTGAACGGAACAGCTAACCCGCC-------------------------A----------------ACTGAC----------------AT----------TTGAT-GTACCTGCAATTCTAATTATTTTCTAACAA-AAA-G-TGTTAACGCAATTTCT-ATGAAATTTGGACT------GG------AAT-GAAAAA---------------------AAAT-CA-ATACAT-----------TTGGTGTCGTA--TATATCT-TTTA-ATA-----ATACTA---CTTAATCTATCGACAAAGATATTGGAAATACAAAAGTGGCGGGTAAGCTGTTCCGTTCAGTAta
gi|7 : --ACTGAACGGAACAGCTAACCTGAC-------------------------ATTTTATGTA-------CCTGAC----------------AT----------TTTAT-ATA----------------TTTTCT--ACA-AAA-G-TATTAACGCAATTTCCTTTGAACGTTTGATT------CA------AAT-ATGAAAGAA-CATT-TAGG-CTATATAAAAT--A-ATAAAAAATCAACACAGTTGATGTCATA--TATATATATATATATAGTCTTATACTACTTCTCAATATATCGAC----ATA--GGAAAt
gi|8 : tattgCTGAACGAAACAGCTAAGCCGCC-------------------------A----------------CCCGAC----------------AT----------TTTAT-GTA----------------TTTTCT--CAA-AAA-AATATAAAAGCAATTTC--TTGAAATTTGGACG------TA------A--------------------------TGTAAAATACATGTACATAACTGTC-T-GTTTATGGCATG--TACAACT-TTTC-ATA-------GCAA---ATCTATATTTTGATAAAGATATTGGAAATACAAAAGTGGCGGGTTAGTTGTTCCGTTCAGTActg
gi|9 : CCGCT-------------------------A----------------ACTGACCAAGT-----------AT----------TTTAT-GTA----------------TTTCCT--CAA-AAT-T-TATCAAGGACATTTCC-TTGAAATTTGGGTT------GG------AAT-AAGAAA-AA-CACT----G-CTATGTTAAGC-CA-ATACATAACTGTC-T-GTTTACGTCG-------------TTG-ATA-----ACGCTA---CTCAATATTTTGACAAA-------AAAATGTAAAAGTGGCGGGTTAGCTGTTACGTTCAGTAta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATTAGTAATCGTAAAGTAATAAGTTGTGTTAGTATAGGAGAGAA