lowQualScore : 1111111 1 1111 1 1 11 11111 111 111 222222222 1
lowQualScore : 8888888 1 5 0 1 77 0 33 5 3 0 0000 66 2 1 4 66 4 0 3 0 11 77777 3 66 0 0 5 3 999 55 222 0 666 3 4 777777777 4 88888 5 77 88 3 2 4 0 1 1
lowQualScore : ....... . . . . .. . .. . . . .... .. . . . .. . . . . .. ..... . .. . . . . ... .. ... . ... . . ......... . ..... . .. .. . . . . . .
lowQualScore : 6666666 9 1 3 6 99 4 44 7 4 6 6666 99 2 0 4 11 4 9 6 9 55 88888 6 77 5 5 9 6 666 00 777 5 444 5 1 888888888 0 44444 7 99 33 9 9 4 6 0 8
consensus : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTGCCCAAAACTATATC--AATATCTTGCCATTTTATATCTTTTGTTGGGCATTTT-TNATTTAAAAAGTGTTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAG-AA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTG-CAAAATAA--AC---AAAGGT---CGGAGTCATTA------ATNTTCATTTTTTCT---AAAAGATGA-TTTGTN-CCTAATATTCGGTGATTTA-TTCTGCATTGAAACCATTGTAGATTAG
Reference ( gi|22675 ) : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTGCCAAAAACTATATC--AATATCTTGCCATTTTATATCTTTTGTTGGGCATTTT-TTATTTAAAAAGTGTTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAA-AA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTG-CAAAGTAA--AC---AAAGGT---TGGAGTTACAA------ATGTTCATTTTTTCT---AAAAGATGA-TTTATA-CCCAATATTCGATGATTTA-TTCGGCATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTGCCCAAAACTATATC--AATATCTTGCCATTTTATATCTTTTGTGGGGCATTTT-TGATCTAAAAAGTGTTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAG-AA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTG-CAAAGTAA--AC---AAAGGT---TGGAGTTACTA------ATGTTCATTTTTTCT---AAAGGATGA-TTTGTA-CCCAATATTTGATGATTTA-TTCTGCCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTGCCCAAAACTATATC--AATATGTTGCCATTTTATATCTTTTGTTGGGCATTTT-TGATTTAAAAAGTGTTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAG-TA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTG-CAAAATAA--AC---AAAGGT---TGAAGTTACTA------ATGTTCATTTTTTCT---AAAAGATGA-T---TA-CCAAATATTCGATGATTTA-TTCTGCATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTGCCCAAAACTATATC--AATATCTTGCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTGTTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAG-AA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTG-CAAAATAA--AC---AAATGT---TTGAGTTATTA------ATGTTCATTTTTTCT---AAAAGATGA-TTTGTA-CCCAATATTCGATGATTTA-TTCTACATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTGCCCAAAATTATATC--AATGTCTTGCCATTTCATATTTTTTAATGGACATTTT-TGATTTATGTAGTTTGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAG-AA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTG-CATAATAA--AC---AGAGAT---TTGAATTAATA------ATATTCATTTTTTCT---AAAAGATAG-TTTGTC-CCTAATATTCGATGA-TTA-TTCTGCATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT------AATTATATC--AATGTCTTGCCATTTTAT---------------TATT-TTATTCATGAAGTTTGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAG-AA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTG-CATAATGA--AC---AGAGAT---TTGAATTAATA------ATATTCATTTTTTCT---AAAATATAG-TTTGTC-CCTTATATTCGATGATTT--TTCTGCTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTGCCCAAAACTATATC--AATATCTTGCCATTTTATATTATTTGTTGGGCATTTT-TTATTTAAAA-GTGTTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAG-AA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTG-CAAAGTAA--AC---ATAGGT---TGGAGTTACTA------ATGTTCATTTTTTCT---AAAAGATGA-TTTGTA-CATTATATTCGATGATTTA-TTCTGCATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTGCCAAAGATTATGTCTGAAGATGAT--CAGTCTGTATTTATTGTATTGCACTTT-TCATTCAGATAATTTTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATA-AA-TATATGTTTA----AT-AGTTTCGGTTTCT-TTTTGACAAAAGGA--AC---ATACAT---CTGATTCTTTA------ATCTTCATTTTTT-T---AAGCAATGAGTTTGTT-CCAAGAATTCTGTGATTAA-TTCTAAATTGGAACCATTG
gi|22684 : TGTTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC--CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTG-CA-------------AAAGGTACATGTA-TCATCATTGTTTATCTTCATTTTTGTC---AAAAGAGAA-TTTGTAGCTTTA-ATTCTGTGGTTCATTTTAACA-TGAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAA-AAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTG-CA---TAA--ACTGCAAAAAA---CAGAATCCTTT------ATTTTCATTTTTTA----AGAAGAGAA-TTGGTT-CGTAATGTTTGGTGATTTA-TTCTGTACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAA-AAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTG-CA---TAA--ACTGCAAATAT---CAGAATCCTTT------ATTTTCATTTTTTTTTAAAGAAGATAA-TTGGTC-CCTAATATTTGGTGGTTTA-TTCTATACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAA-AAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTG-CA--TTAACTGC---AAATAT---CAGAATCCTTT------ATTTTCATTTTTTTA---AGAAGAGAA-TTGGTT-CCTAATATTTGGTGGTTTA-TTCTATACTGAAACCATTGTAAGTT
gi|22688 : ------ATTTTCATTTTTTTA---AGAAGAGAA-TTGGTT-CCTAATATTTGGTGATTTA-TTCCGTAATGAAACCATTGTAAGTT
gi|22690 : caaaatgcaaatatcagaatcctttGTTTTTTTTTTTT---AAGA-ATGAGTTTGTA-CCCAACATTCTATGGTTGA-TTCTATATAGAAGCCATTGTAAATT
gi|22689 : TTTATTTTTTTA---AGAAGAAAA-TTGGTT-CCTAATATTTGGTGGTTTA-TTCTGTACTGAAACCATTGTAAAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22683 ): TTATTTAGAACATTGTCATATTTAATTGACCCAAAGATAATATCTTTCACAGACCATTTTGGTTGAACGTTTATATTTTTATCAGTGCATGGAGTTTCAAAATTAGCCCAAAATGTTGTTGTATATTTACACTCCCAAAAAAGATGCGTAATATTTTCTATATGCTGTTTACAAAAAGTGCAAGAATTGTCGTCTTTTATCTTCATTTTTGTCAATAAATAATTTGTAGCAGTAATTCTGTGATTTATTTTAACCTGAAACCATTGTAGCTTGG
Alignments
lowQualScore : 1111111 111111 11111111 111
lowQualScore : 4444444 2 2 4 0 66 222222 0 77 44444444 8888 55 0 1 3 55 3 9 9 99 77777 3 22 1 555 1 000 33 5 0 7777 1 66666 5 33 1 2 2 0
lowQualScore : ....... . . . . .. ...... . .. ........ .... .. . . . .. . . . .. ..... . .. . ... . ... .. . . .... . ..... . .. . . . .
lowQualScore : 4444444 3 0 4 9 11 888888 9 00 55555555 5555 55 2 5 6 00 6 2 2 22 55555 1 00 0 666 7 000 33 3 9 1111 0 99999 0 55 1 5 5 4
consensus : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAATGAAC---AAANATCGGAGTCATTN---ATNTTCATTTTTTCT---AAAAGATGA-TTTGT-NCCTAATA-TTCGGTGATTTATTCT-GCATTGAAACCATTGCAGATTAG
Reference ( family-902 ) : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAATAAAC---AAAGGTCGGAGTCATTA---ATNTTCATTTTTTCT---AAAAGATGA-TTTGT-NCCTAATA-TTCGGTGATTTATTCT-GCATTGAAACCATTGTAGATTAG
gi|22675 : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCAAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTT-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAAAA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTGCA--AAGTAAAC---AAAGGTTGGAGTTACAA---ATGTTCATTTTTTCT---AAAAGATGA-TTTAT-ACCCAATA-TTCGATGATTTATTCG-GCATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTGGGGCATTTTTG-ATCTAAAAAGTG--------TTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAGAA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAGTAAAC---AAAGGTTGGAGTTACTA---ATGTTCATTTTTTCT---AAAGGATGA-TTTGT-ACCCAATA-TTTGATGATTTATTCT-GCCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTG-CCCAAAACTATATC--AATATGTT------GCCATTTTATATCTTTTGTTGGGCATTTTTG-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAGTA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAATAAAC---AAAGGTTGAAGTTACTA---ATGTTCATTTTTTCT---AAAAGATGA-T---T-ACCAAATA-TTCGATGATTTATTCT-GCATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTGCA--AAATAAAC---AAATGTTTGAGTTATTA---ATGTTCATTTTTTCT---AAAAGATGA-TTTGT-ACCCAATA-TTCGATGATTTATTCT-ACATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTG-CCCAAAATTATATC--AATGTCTT------GCCATTTCATATTTTTTAATGGACATTTTTG-ATTTATGTAGTT--------TGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAGAA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTGCA--TAATAAAC---AGAGATTTGAATTAATA---ATATTCATTTTTTCT---AAAAGATAG-TTTGT-CCCTAATA-TTCGATGA-TTATTCT-GCATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT-------AATTATATC--AATGTCTT------GCCATTTTAT-------------TATTTT---ATTCATGAAGTT--------TGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAGAA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTGCA--TAATGAAC---AGAGATTTGAATTAATA---ATATTCATTTTTTCT---AAAATATAG-TTTGT-CCCTTATA-TTCGATGATTT-TTCT-GCTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATTATTTGTTGGGCATTTTTT-ATTTAAAA-GTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAGTAAAC---ATAGGTTGGAGTTACTA---ATGTTCATTTTTTCT---AAAAGATGA-TTTGT-ACATTATA-TTCGATGATTTATTCT-GCATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTG-CCAAAGATTATGTCTGAAGATGAT--------CAGTCTGTATTTATTGTATTGCACTTTTC-ATTCAGATAATT--------TTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATAAA-TATATGTTTA----AT-AGTTTCGGTTTCTTTTTGACA--AAAGGAAC---ATACATCTGATTCTTTA---ATCTTCATTTTTT-T---AAGCAATGAGTTTGT-TCCAAGAA-TTCTGTGATTAATTCT-AAATTGGAACCATTG
gi|22683 : T-------TATTTAGAACATTGTC--ATATTTAATTGACCCAAAG----AT---AATATCTTTCACAGACCATTTTG--------GTTGAACGTTTATA-TTTTTATCAGTGCATGGAGTTTC----AAAA--TTAGCCCAAAATGTTG-TTGTA--TA-TTTACACTC-CCAAAA-AAGATGCGTA----AT-ATTTTCTATATGCTGTTTACA--AAAAGTGC---AAGAATTGTCGTCTTTT---ATCTTCATTTTTGTC---AATAAATAA-TTTGT-AGC-AGTAATTCTGTGATTTATTTT-AACCTGAAACCATTGTAGCTTGG
gi|22684 : TG--------TTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC-CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTGCA--AAAGGTAC---ATGTATC---ATCATTGTTTATCTTCATTTTTGTC---AAAAGAGAA-TTTGTAGCTTTA-A-TTCTGTGGTTCATTTTAACA-TGAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAAAAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTGCA-----TAAACTGCAAAAAACAGAATCCTTT---ATTTTCATTTTTTA----AGAAGAGAA-TTGGT-TCGTAATG-TTTGGTGATTTATTCT-GTACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCA-----TAAACTGCAAATATCAGAATCCTTT---ATTTTCATTTTTTTTTAAAGAAGATAA-TTGGT-CCCTAATA-TTTGGTGGTTTATTCT-ATACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCATTAACTG--C---AAATATCAGAATCCTTT---ATTTTCATTTTTTTA---AGAAGAGAA-TTGGT-TCCTAATA-TTTGGTGGTTTATTCT-ATACTGAAACCATTGTAAGTT
gi|22688 : CA--AAATG--C---AAATATCAGAATCCTTT---ATTTTCATTTTTTTA---AGAAGAGAA-TTGGT-TCCTAATA-TTTGGTGATTTATTCC-GTAATGAAACCATTGTAAGTT
gi|22689 : GGGTTATTT---ATTTT-ATTTTTTTA---AGAAGAAAA-TTGGT-TCCTAATA-TTTGGTGGTTTATTCT-GTACTGAAACCATTGTAAAT
gi|22690 : TTTTTTTT---AAGA-ATGAGTTTGT-ACCCAACA-TTCTATGGTTGATTCT-ATATAGAAGCCATTGTAAATT
Alignments
lowQualScore : 1111111 111111 11111111
lowQualScore : 4444444 1 2 4 0 66 222222 0 77 44444444 8888 55 0 1 3 55 3 9 9 99 77777 3 22 1 99 5 8 1 2 1 1 1 66666 5 33 1 2 2 0
lowQualScore : ....... . . . . .. ...... . .. ........ .... .. . . . .. . . . .. ..... . .. . .. . . . . . . . ..... . .. . . . .
lowQualScore : 4444444 0 0 4 9 11 888888 9 00 55555555 5555 55 2 5 6 00 6 2 2 22 55555 1 00 0 66 7 7 0 9 9 0 0 99999 0 55 1 5 5 5
consensus : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGATGA-TTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
Reference ( family-902 ) : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTCATTNATNTTCATTTTTTCT---AAAAGATGA-TTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22675 : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCAAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTT-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAAAA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACAAATGTTCATTTTTTCT---AAAAGATGA-TTTATA-CCCAATA-TTCGATGATTTATTCGG-CATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTGGGGCATTTTTG-ATCTAAAAAGTG--------TTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAGAA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAGGATGA-TTTGTA-CCCAATA-TTTGATGATTTATTCTG-CCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTG-CCCAAAACTATATC--AATATGTT------GCCATTTTATATCTTTTGTTGGGCATTTTTG-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAGTA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAA-TAAACAAAGGTTGAAGTTACTAATGTTCATTTTTTCT---AAAAGATGA-T---TA-CCAAATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTGCA--AAA-TAAACAAATGTTTGAGTTATTAATGTTCATTTTTTCT---AAAAGATGA-TTTGTA-CCCAATA-TTCGATGATTTATTCTA-CATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTG-CCCAAAATTATATC--AATGTCTT------GCCATTTCATATTTTTTAATGGACATTTTTG-ATTTATGTAGTT--------TGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAGAA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTGCA--TAA-TAAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAAGATAG-TTTGTC-CCTAATA-TTCGATGA-TTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT-------AATTATATC--AATGTCTT------GCCATTTTAT-------------TATTTT---ATTCATGAAGTT--------TGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAGAA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTGCA--TAA-TGAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAATATAG-TTTGTC-CCTTATA-TTCGATGATTT-TTCTG-CTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATTATTTGTTGGGCATTTTTT-ATTTAAAA-GTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACATAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAAGATGA-TTTGTA-CATTATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTG-CCAAAGATTATGTCTGAAGATGAT--------CAGTCTGTATTTATTGTATTGCACTTTTC-ATTCAGATAATT--------TTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATAAA-TATATGTTTA----AT-AGTTTCGGTTTCTTTTTGACA--AAA-GGAACATACATCTGATTCTTTAATCTTCATTTTTT-T---AAGCAATGAGTTTGTT-CCAAGAA-TTCTGTGATTAATTCTA-AATTGGAACCATTG
gi|22683 : T-------TATTTAGAACATTGTC--ATATTTAATTGACCCAAAG----AT---AATATCTTTCACAGACCATTTTG--------GTTGAACGTTTATA-TTTTTATCAGTGCATGGAGTTTC----AAAA--TTAGCCCAAAATGTTG-TTGTA--TA-TTTACACTC-CCAAAA-AAGATGCGTA----AT-ATTTTCTATATGCTGTTTACA--AAA-AGTGCAAGAATTGTCGTCTTTTATCTTCATTTTTGTC---AATAAATAA-TTTGTA-GC-AGTAATTCTGTGATTTATTTTA-ACCTGAAACCATTGTAGCTTGG
gi|22684 : TG--------TTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC-CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTGCA--AAA-GGTACATGTATCATCATTGTTTATCTTCATTTTTGTC---AAAAGAGAA-TTTGTAGCTTTA-A-TTCTGTGGTTCATTTTAACAT-GAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAAAAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAAAAACAGAATCCTTTATTTTCATTTTTTA----AGAAGAGAA-TTGGTT-CGTAATG-TTTGGTGATTTATTCTG-TACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAATATCAGAATCCTTTATTTTCATTTTTTTTTAAAGAAGATAA-TTGGTC-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCATTAAC-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAGAA-TTGGTT-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTAAGTT
gi|22688 : CA--AAA-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAGAA-TTGGTT-CCTAATA-TTTGGTGATTTATTCCG-TAATGAAACCATTGTAAGTT
gi|22689 : GGGTTATTTATTTT-ATTTTTTTA---AGAAGAAAA-TTGGTT-CCTAATA-TTTGGTGGTTTATTCTG-TACTGAAACCATTGTAAAT
gi|22690 : TTTTTTTT---AAGA-ATGAGTTTGTA-CCCAACA-TTCTATGGTTGATTCTA-TATAGAAGCCATTGTAAATT
Alignments
lowQualScore : 1111111 111111 11111111
lowQualScore : 4444444 1 2 4 0 66 222222 0 77 44444444 8888 55 0 1 3 55 3 9 9 99 77777 3 22 1 99 5 8 1 2 1 1 1 77777 2 0 33 0 2 2 0
lowQualScore : ....... . . . . .. ...... . .. ........ .... .. . . . .. . . . .. ..... . .. . .. . . . . . . . ..... . . .. . . . .
lowQualScore : 4444444 0 0 4 9 11 888888 9 00 55555555 5555 55 2 5 6 00 6 2 2 22 55555 1 00 0 66 7 7 0 9 0 0 0 55555 7 6 77 7 7 7 1
consensus : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGATAA-TTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
Reference ( family-902 ) : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGATGA-TTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22675 : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCAAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTT-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAAAA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACAAATGTTCATTTTTTCT---AAAAGATGA-TTTATA-CCCAATA-TTCGATGATTTATTCGG-CATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTGGGGCATTTTTG-ATCTAAAAAGTG--------TTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAGAA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAGGATGA-TTTGTA-CCCAATA-TTTGATGATTTATTCTG-CCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTG-CCCAAAACTATATC--AATATGTT------GCCATTTTATATCTTTTGTTGGGCATTTTTG-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAGTA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAA-TAAACAAAGGTTGAAGTTACTAATGTTCATTTTTTCT---AAAAGATGA-T---TA-CCAAATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTGCA--AAA-TAAACAAATGTTTGAGTTATTAATGTTCATTTTTTCT---AAAAGATGA-TTTGTA-CCCAATA-TTCGATGATTTATTCTA-CATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTG-CCCAAAATTATATC--AATGTCTT------GCCATTTCATATTTTTTAATGGACATTTTTG-ATTTATGTAGTT--------TGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAGAA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTGCA--TAA-TAAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAAGATAG-TTTGTC-CCTAATA-TTCGATGA-TTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT-------AATTATATC--AATGTCTT------GCCATTTTAT-------------TATTTT---ATTCATGAAGTT--------TGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAGAA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTGCA--TAA-TGAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAATATAG-TTTGTC-CCTTATA-TTCGATGATTT-TTCTG-CTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATTATTTGTTGGGCATTTTTT-ATTTAAAA-GTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACATAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAAGATGA-TTTGTA-CATTATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTG-CCAAAGATTATGTCTGAAGATGAT--------CAGTCTGTATTTATTGTATTGCACTTTTC-ATTCAGATAATT--------TTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATAAA-TATATGTTTA----AT-AGTTTCGGTTTCTTTTTGACA--AAA-GGAACATACATCTGATTCTTTAATCTTCATTTTTT-T---AAGCAATGAGTTTGTT-CCAAGAA-TTCTGTGATTAATTCTA-AATTGGAACCATTG
gi|22683 : T-------TATTTAGAACATTGTC--ATATTTAATTGACCCAAAG----AT---AATATCTTTCACAGACCATTTTG--------GTTGAACGTTTATA-TTTTTATCAGTGCATGGAGTTTC----AAAA--TTAGCCCAAAATGTTG-TTGTA--TA-TTTACACTC-CCAAAA-AAGATGCGTA----AT-ATTTTCTATATGCTGTTTACA--AAA-AGTGCAAGAATTGTCGTCTTTTATCTTCATTTTTGTC---AATAAATAA-TTTGTA-GC-AGTAATTCTGTGATTTATTTTA-ACCTGAAACCATTGTAGCTTGG
gi|22684 : TG--------TTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC-CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTGCA--AAA-GGTACATGTATCATCATTGTTTATCTTCATTTTTGTC---AAAAGAGAA-TTTGTAGCTTTA-A-TTCTGTGGTTCATTTTAACAT-GAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAAAAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAAAAACAGAATCCTTTATTTTCATTTTTTA----AGAAGAGAA-TTGGTT-CGTAATG-TTTGGTGATTTATTCTG-TACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAATATCAGAATCCTTTATTTTCATTTTTTTTTAAAGAAGATAA-TTGGTC-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCATTAAC-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAGAA-TTGGTT-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTAAGTT
gi|22688 : CA--AAA-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAGAA-TTGGTT-CCTAATA-TTTGGTGATTTATTCCG-TAATGAAACCATTGTAAGTT
gi|22689 : GGGTTATTTATTTT-ATTTTTTTA---AGAAGAAAA-TTGGTT-CCTAATA-TTTGGTGGTTTATTCTG-TACTGAAACCATTGTAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22690 ): GTTTTTTTTTTTTAAGAATGAGTTTGTACCCAACATTCTATGGTTGATTCTATATAGAAGCCATTGTAAATT
Alignments
lowQualScore : 1111111 111111 11111111
lowQualScore : 4444444 1 2 4 0 66 222222 0 77 44444444 8888 55 0 1 3 55 3 9 9 99 77777 3 22 1 99 5 8 1 2 1 1 1 77777 2 0 33 0 2 2 0
lowQualScore : ....... . . . . .. ...... . .. ........ .... .. . . . .. . . . .. ..... . .. . .. . . . . . . . ..... . . .. . . . .
lowQualScore : 4444444 0 0 4 9 11 888888 9 00 55555555 5555 55 2 5 6 00 6 2 2 22 55555 1 00 0 66 7 7 0 9 0 0 0 55555 7 6 77 7 7 7 1
consensus : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
Reference ( family-902 ) : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22675 : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCAAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTT-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAAAA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACAAATGTTCATTTTTTCT---AAAAGAT-GATTTATA-CCCAATA-TTCGATGATTTATTCGG-CATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTGGGGCATTTTTG-ATCTAAAAAGTG--------TTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAGAA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAGGAT-GATTTGTA-CCCAATA-TTTGATGATTTATTCTG-CCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTG-CCCAAAACTATATC--AATATGTT------GCCATTTTATATCTTTTGTTGGGCATTTTTG-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAGTA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAA-TAAACAAAGGTTGAAGTTACTAATGTTCATTTTTTCT---AAAAGAT-GAT---TA-CCAAATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTGCA--AAA-TAAACAAATGTTTGAGTTATTAATGTTCATTTTTTCT---AAAAGAT-GATTTGTA-CCCAATA-TTCGATGATTTATTCTA-CATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTG-CCCAAAATTATATC--AATGTCTT------GCCATTTCATATTTTTTAATGGACATTTTTG-ATTTATGTAGTT--------TGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAGAA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTGCA--TAA-TAAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAAGAT-AGTTTGTC-CCTAATA-TTCGATGA-TTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT-------AATTATATC--AATGTCTT------GCCATTTTAT-------------TATTTT---ATTCATGAAGTT--------TGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAGAA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTGCA--TAA-TGAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAATAT-AGTTTGTC-CCTTATA-TTCGATGATTT-TTCTG-CTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATTATTTGTTGGGCATTTTTT-ATTTAAAA-GTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACATAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAAGAT-GATTTGTA-CATTATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTG-CCAAAGATTATGTCTGAAGATGAT--------CAGTCTGTATTTATTGTATTGCACTTTTC-ATTCAGATAATT--------TTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATAAA-TATATGTTTA----AT-AGTTTCGGTTTCTTTTTGACA--AAA-GGAACATACATCTGATTCTTTAATCTTCATTTTTT-T---AAGCAATGAGTTTGTT-CCAAGAA-TTCTGTGATTAATTCTA-AATTGGAACCATTG
gi|22683 : T-------TATTTAGAACATTGTC--ATATTTAATTGACCCAAAG----AT---AATATCTTTCACAGACCATTTTG--------GTTGAACGTTTATA-TTTTTATCAGTGCATGGAGTTTC----AAAA--TTAGCCCAAAATGTTG-TTGTA--TA-TTTACACTC-CCAAAA-AAGATGCGTA----AT-ATTTTCTATATGCTGTTTACA--AAA-AGTGCAAGAATTGTCGTCTTTTATCTTCATTTTTGTC---AATAAAT-AATTTGTA-GC-AGTAATTCTGTGATTTATTTTA-ACCTGAAACCATTGTAGCTTGG
gi|22684 : TG--------TTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC-CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTGCA--AAA-GGTACATGTATCATCATTGTTTATCTTCATTTTTGTC---AAAAGAG-AATTTGTAGCTTTA-A-TTCTGTGGTTCATTTTAACAT-GAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAAAAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAAAAACAGAATCCTTTATTTTCATTTTTTA----AGAAGAG-AATTGGTT-CGTAATG-TTTGGTGATTTATTCTG-TACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAATATCAGAATCCTTTATTTTCATTTTTTTTTAAAGAAGAT-AATTGGTC-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCATTAAC-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAG-AATTGGTT-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTAAGTT
gi|22688 : CA--AAA-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAG-AATTGGTT-CCTAATA-TTTGGTGATTTATTCCG-TAATGAAACCATTGTAAGTT
gi|22689 : GGGTTATTTATTTT-ATTTTTTTA---AGAAGAA-AATTGGTT-CCTAATA-TTTGGTGGTTTATTCTG-TACTGAAACCATTGTAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22690 ): GTTTTTTTTTTTTAAGAATGAGTTTGTACCCAACATTCTATGGTTGATTCTATATAGAAGCCATTGTAAATT
Alignments
lowQualScore : 1111111 111111 11111111
lowQualScore : 4444444 1 2 4 0 66 222222 0 77 44444444 8888 55 0 1 3 55 3 9 9 99 77777 3 22 1 99 5 8 1 2 1 1 1 77777 2 0 33 0 2 2 0
lowQualScore : ....... . . . . .. ...... . .. ........ .... .. . . . .. . . . .. ..... . .. . .. . . . . . . . ..... . . .. . . . .
lowQualScore : 4444444 0 0 4 9 11 888888 9 00 55555555 5555 55 2 5 6 00 6 2 2 22 55555 1 00 0 66 7 7 0 9 0 0 0 55555 7 6 77 7 7 7 1
consensus : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
Reference ( family-902 ) : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22675 : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCAAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTT-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAAAA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACAAATGTTCATTTTTTCT---AAAAGAT-GATTTATA-CCCAATA-TTCGATGATTTATTCGG-CATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTGGGGCATTTTTG-ATCTAAAAAGTG--------TTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAGAA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAGGAT-GATTTGTA-CCCAATA-TTTGATGATTTATTCTG-CCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTG-CCCAAAACTATATC--AATATGTT------GCCATTTTATATCTTTTGTTGGGCATTTTTG-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAGTA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAA-TAAACAAAGGTTGAAGTTACTAATGTTCATTTTTTCT---AAAAGAT-GAT---TA-CCAAATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTGCA--AAA-TAAACAAATGTTTGAGTTATTAATGTTCATTTTTTCT---AAAAGAT-GATTTGTA-CCCAATA-TTCGATGATTTATTCTA-CATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTG-CCCAAAATTATATC--AATGTCTT------GCCATTTCATATTTTTTAATGGACATTTTTG-ATTTATGTAGTT--------TGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAGAA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTGCA--TAA-TAAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAAGAT-AGTTTGTC-CCTAATA-TTCGATGA-TTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT-------AATTATATC--AATGTCTT------GCCATTTTAT-------------TATTTT---ATTCATGAAGTT--------TGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAGAA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTGCA--TAA-TGAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAATAT-AGTTTGTC-CCTTATA-TTCGATGATTT-TTCTG-CTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATTATTTGTTGGGCATTTTTT-ATTTAAAA-GTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACATAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAAGAT-GATTTGTA-CATTATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTG-CCAAAGATTATGTCTGAAGATGAT--------CAGTCTGTATTTATTGTATTGCACTTTTC-ATTCAGATAATT--------TTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATAAA-TATATGTTTA----AT-AGTTTCGGTTTCTTTTTGACA--AAA-GGAACATACATCTGATTCTTTAATCTTCATTTTTT-T---AAGCAATGAGTTTGTT-CCAAGAA-TTCTGTGATTAATTCTA-AATTGGAACCATTG
gi|22683 : T-------TATTTAGAACATTGTC--ATATTTAATTGACCCAAAG----AT---AATATCTTTCACAGACCATTTTG--------GTTGAACGTTTATA-TTTTTATCAGTGCATGGAGTTTC----AAAA--TTAGCCCAAAATGTTG-TTGTA--TA-TTTACACTC-CCAAAA-AAGATGCGTA----AT-ATTTTCTATATGCTGTTTACA--AAA-AGTGCAAGAATTGTCGTCTTTTATCTTCATTTTTGTC---AATAAAT-AATTTGTA-GC-AGTAATTCTGTGATTTATTTTA-ACCTGAAACCATTGTAGCTTGG
gi|22684 : TG--------TTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC-CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTGCA--AAA-GGTACATGTATCATCATTGTTTATCTTCATTTTTGTC---AAAAGAG-AATTTGTAGCTTTA-A-TTCTGTGGTTCATTTTAACAT-GAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAAAAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAAAAACAGAATCCTTTATTTTCATTTTTTA----AGAAGAG-AATTGGTT-CGTAATG-TTTGGTGATTTATTCTG-TACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAATATCAGAATCCTTTATTTTCATTTTTTTTTAAAGAAGAT-AATTGGTC-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCATTAAC-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAG-AATTGGTT-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTAAGTT
gi|22688 : CA--AAA-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAG-AATTGGTT-CCTAATA-TTTGGTGATTTATTCCG-TAATGAAACCATTGTAAGTT
gi|22689 : GGGTTATTTATTTT-ATTTTTTTA---AGAAGAA-AATTGGTT-CCTAATA-TTTGGTGGTTTATTCTG-TACTGAAACCATTGTAAAT
blockSeqs : AGCAGCC A A A TG TCACAG TT CATGGAGT TTAT CT A G TT A G A AG TTTTT G AT G TT C A G G A A G TTTAA G AG A A
blockSeqs : . A T . . . G . . . A . . . G A AG T . AT G T C A G G A A G CT . A . .
blockSeqs : . A A . . . G . . . A . . . G A AG T . AC G T . A T T A A G CT . A . .
blockSeqs : . T A . . . G . . . T . . . . . GA T . AG T . . A G T A A A CT . A . .
blockSeqs : . T A . . . T . . . A . . . . . AT T . AG T . . A G T A A A CT . C . .
blockSeqs : . A A . . . C . . . A . . . . . AA T . AT G . . A G G A A G CT . C . .
blockSeqs : . C . . . . A . . . A . . . . . TA A . GG T . . A C T T A C CT . A . .
blockSeqs : . T . . . . . . . . T . . . . . GA A . TA T . . T A G T T C TC . T . .
blockSeqs : . . . G . . . . . AG A . TA G . . T T A G T C TC . A . .
blockSeqs : . . . . . . . A . TA C . . . A A C T T TA . T . .
blockSeqs : . . . A . TA C . . . T A C T T TA . C . .
blockSeqs : . . . A . TA C . . . T A C T T TA . T . .
blockSeqs : . . . T A C T T T . T . .
blockSeqs : A T T A . T . .
blockSeqCons :
originalCons : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
finalCons : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22690 ): GTTTTTTTTTTTTAAGAATGAGTTTGTACCCAACATTCTATGGTTGATTCTATATAGAAGCCATTGTAAATT
Alignments
lowQualScore : 1111111 111111 11111111
lowQualScore : 4444444 1 2 4 0 66 222222 0 77 44444444 8888 55 0 1 3 55 3 9 9 99 77777 3 22 1 99 5 8 1 2 1 1 1 77777 2 0 33 0 2 2 0
lowQualScore : ....... . . . . .. ...... . .. ........ .... .. . . . .. . . . .. ..... . .. . .. . . . . . . . ..... . . .. . . . .
lowQualScore : 4444444 0 0 4 9 11 888888 9 00 55555555 5555 55 2 5 6 00 6 2 2 22 55555 1 00 0 66 7 7 0 9 0 0 0 55555 7 6 77 7 7 7 1
consensus : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
Reference ( family-902 ) : GAAAACAGTATAT-------TATTNATAACATCATCGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTN-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTN----AT-TGTCTCNNCATGTNTTTTGCA--AAA-TGAACAAANATCGGAGTTNTTNATNTTCATTTTTTCT---AAAAGAT-AATTTGTN-CCTAATA-TTCGGTGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22675 : GAAAACAGTATAT-------TATTAATAACATCATCGAATTTTTTGTTG-CCAAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTTGGGCATTTTTT-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAAAA-TAAGTGTTTC----AT-TGTCTCAGCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACAAATGTTCATTTTTTCT---AAAAGAT-GATTTATA-CCCAATA-TTCGATGATTTATTCGG-CATTGAAACCATTGCAGATTAG
gi|22676 : GAAAACAGTATAT-------TATTAACAACATCAACGAATTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTGTGGGGCATTTTTG-ATCTAAAAAGTG--------TTC----AACA--TTGGCCCGAAATAATT-TTGTG--AC-CCTACATTC-GCAGAA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACAAAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAGGAT-GATTTGTA-CCCAATA-TTTGATGATTTATTCTG-CCTTGAAACCATTGCAGATAAG
gi|22677 : GAAAACAGTATAT-------CATTAATAACATCATCGATTTTTTTGTTG-CCCAAAACTATATC--AATATGTT------GCCATTTTATATCTTTTGTTGGGCATTTTTG-ATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAACTAATT-TTGTG--AC-CCTTCATTC-ACAGTA-TAAGTGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAA-TAAACAAAGGTTGAAGTTACTAATGTTCATTTTTTCT---AAAAGAT-GAT---TA-CCAAATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22678 : GATAACAGTATAT-------TATTAATAACATCATCG--TTTTTTGTTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATCTTTTTATAGGCATTTTTTTATTTAAAAAGTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAGTGTTTT----AT-TGTCTCACCATGTGTTTTGCA--AAA-TAAACAAATGTTTGAGTTATTAATGTTCATTTTTTCT---AAAAGAT-GATTTGTA-CCCAATA-TTCGATGATTTATTCTA-CATTGAAACCATTG
gi|22679 : GAAAACAGTATAT-------TATTTATAACATCATCAAATTAGT-GTTG-CCCAAAATTATATC--AATGTCTT------GCCATTTCATATTTTTTAATGGACATTTTTG-ATTTATGTAGTT--------TGT----AAGT--TTGGCCTATAAAGTTT-TTGTG--AC-CCTGCAGTC-ACAGAA-TAGATGTTAT----AT-TGTCTCAGCATAATTTTTGCA--TAA-TAAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAAGAT-AGTTTGTC-CCTAATA-TTCGATGA-TTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22680 : GAAAACAGTATAT-------TATTTATAACTTCATCAAAAATAGTGTT-------AATTATATC--AATGTCTT------GCCATTTTAT-------------TATTTT---ATTCATGAAGTT--------TGT----AAGT--TTGGCTCAGAAAGATT-TTGAG--AC-CCTGCATTC-ACAGAA-TAATTGTTTTTTTTAT-TGCCTCAGCAAGATTTTTGCA--TAA-TGAACAGAGATTTGAATTAATAATATTCATTTTTTCT---AAAATAT-AGTTTGTC-CCTTATA-TTCGATGATTT-TTCTG-CTTTGAAACCATTGAAGATTAG
gi|22681 : AAAACAATATAT-------TATTAATAACATCATCGA-TTTTTTGCTG-CCCAAAACTATATC--AATATCTT------GCCATTTTATATTATTTGTTGGGCATTTTTT-ATTTAAAA-GTG--------TTC----AAGA--TTGGCCCAAAATAATT-TTGTG--AC-CCTACATTC-ACAGAA-TAAATGTTTT----AT-TGTCTCATCATGTGTTTTGCA--AAG-TAAACATAGGTTGGAGTTACTAATGTTCATTTTTTCT---AAAAGAT-GATTTGTA-CATTATA-TTCGATGATTTATTCTG-CATTGAAACCATTGCAGATTAG
gi|22682 : AAGCAGTATATAGCAGCCTATTCAAAACAGTTTCGAATGTCATACTG-CCAAAGATTATGTCTGAAGATGAT--------CAGTCTGTATTTATTGTATTGCACTTTTC-ATTCAGATAATT--------TTT----AAAACTTTG----AAAA-AATTGTTGCGTTAC-TATGCAGTC-AATAAA-TATATGTTTA----AT-AGTTTCGGTTTCTTTTTGACA--AAA-GGAACATACATCTGATTCTTTAATCTTCATTTTTT-T---AAGCAATGAGTTTGTT-CCAAGAA-TTCTGTGATTAATTCTA-AATTGGAACCATTG
gi|22683 : T-------TATTTAGAACATTGTC--ATATTTAATTGACCCAAAG----AT---AATATCTTTCACAGACCATTTTG--------GTTGAACGTTTATA-TTTTTATCAGTGCATGGAGTTTC----AAAA--TTAGCCCAAAATGTTG-TTGTA--TA-TTTACACTC-CCAAAA-AAGATGCGTA----AT-ATTTTCTATATGCTGTTTACA--AAA-AGTGCAAGAATTGTCGTCTTTTATCTTCATTTTTGTC---AATAAAT-AATTTGTA-GC-AGTAATTCTGTGATTTATTTTA-ACCTGAAACCATTGTAGCTTGG
gi|22684 : TG--------TTCTTATAAAA--CTATCCCAAAATG-TT-TCTTC--ATACTTGCATTC-CAAGAA-TAAGTGTGTA----ATGTTTTTCTACATGTGCTTTGCA--AAA-GGTACATGTATCATCATTGTTTATCTTCATTTTTGTC---AAAAGAG-AATTTGTAGCTTTA-A-TTCTGTGGTTCATTTTAACAT-GAAACCATT
gi|22685 : AAAATTGTT-TAGAA--AT-CTCACATTCGATAAAAATA--TGTTAA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAAAAACAGAATCCTTTATTTTCATTTTTTA----AGAAGAG-AATTGGTT-CGTAATG-TTTGGTGATTTATTCTG-TACTGAAACCATTGTAAGTT
gi|22686 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCAT-AAACTG--CAAATATCAGAATCCTTTATTTTCATTTTTTTTTAAAGAAGAT-AATTGGTC-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTA-ATT
gi|22687 : ACATTCGATAAAAATA--TGTTTA----AT-TGTTTCTATTTCTCTGTTGCATTAAC-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAG-AATTGGTT-CCTAATA-TTTGGTGGTTTATTCTA-TACTGAAACCATTGTAAGTT
gi|22688 : CA--AAA-TG--CAAATATCAGAATCCTTTATTTTCATTTTTTTA---AGAAGAG-AATTGGTT-CCTAATA-TTTGGTGATTTATTCCG-TAATGAAACCATTGTAAGTT
gi|22689 : GGGTTATTTATTTT-ATTTTTTTA---AGAAGAA-AATTGGTT-CCTAATA-TTTGGTGGTTTATTCTG-TACTGAAACCATTGTAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22690 ): GTTTTTTTTTTTTAAGAATGAGTTTGTACCCAACATTCTATGGTTGATTCTATATAGAAGCCATTGTAAATT