lowQualScore : 1
lowQualScore : 1 5 6666 7 888888 33 88 888 6 4 7
lowQualScore : . . .... . ...... .. .. ... . . .
lowQualScore : 4 7 5555 8 222222 77 22 666 5 7 0
consensus : TGTGTGATACGGTCG----AAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAATATAGTTCATCTAA
Reference ( gi|144300 ) : TGTGTGATATGATCG----AAATATTCTGTA------AGTCAAATGTTTTG--TTC-CGAGTAAC--GGAATATAGTCCAACTAA
gi|144297 : TGTGTGACATGTTCG----AAATATTCTGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAATATAGTTCATCTAA
gi|144301 : TGTGTGATATGGTCA----AAATATACTGTA------ATTCAAATGTTTTG--ATC-TGAGTAAT--GGAATATAATTCATCTAA
gi|144302 : TGTGTGATATGGTCG----AAATATGCTGTA------AGTAAAATGTTTTG--TTC-TGAGTAAT--GAAATATAAT
gi|144299 : TGTGTGCTACGGTCG----AAATATACGGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--AGAATATAATTCATCTAAtgatct
gi|144305 : TGTGTGATATGGTCG----AAATATACTGTA------AGTCAAATGTTTGG--TTT-TGAGTAGT--ATAATGTA-TTCATCTAA
gi|144304 : TGTGTGATACGGTAG----AAATGTACTGTA------AATCAAATGTTTTG--TTC-TTAGTAAT--AGAATATATTTCA
gi|144303 : TGAGTGATACGGTCG----AAATATTCTGTA------AGTCAAATGTTTTGTTTTT-TGACTAAT--GGAATAtgtaa
gi|144298 : TGTGTGATACAGTCG----AAATACTCTGTACCAGTTAGTCAAAT-TTTTG--TTT-GGAGTAAT--GAAATATAGTTCaaagttgactaa
gi|144306 : TATATGATACAGTCA----AAGTATGCTGTA------AGACAAAAGTTTTG--TTC-TGAGTAAT--GGAATGTATTC
gi|144307 : TGTGATACGGCCG----AAATATTCTGTG------AGTCAAATGTTTTG--TTA-TGAGTAGT--CGCATACAGTTCATCTAAa
gi|144308 : TGTGATACGGTCGGTCGAAATATCCTGTA------CGTCAAATGTTTTG--TTCACAAGTTAC--GGAATATTGTTCATCTAA
gi|144309 : TGCGATACAATCG----ATATGTACTGCA------AG---AACGTTTTG--TAC-TGAGTAAT--GGAATATA-TTTATCTAA
gi|144310 : TGTTATACAGTTA----AAATTTACTGTA------ATTCAAAACTTTTG--TTC-TGAGTAATTGGAAATATA
gi|144311 : ------AGTCAA-TGTTTTG--TTC-TGAGTAAT--GGAATAAAGTTCATCTAAcatc
gi|144312 : AAATGTTTTG--TTC-TGAGTAAT--GGAATATAATTCATCT
Alignments
lowQualScore : 6666 1 777777 33 2 33 2 8
lowQualScore : .... . ...... .. . .. . .
lowQualScore : 1111 0 777777 44 5 44 5 1
consensus : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
Reference ( family-897 ) : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
gi|144297 : TGTGTGACATGTT----CGAAATATTCTGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
gi|144298 : TGTGTGATACAGT----CGAAATACTCTGTACCAGTTAGTCAAAT-TTTTG--TTT-GGAGTAAT--GAAAT-ATAGTTC
gi|144299 : TGTGTGCTACGGT----CGAAATATACGGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--AGAAT-ATAATTCATCTAA
gi|144300 : TGTGTGATATGAT----CGAAATATTCTGTA------AGTCAAATGTTTTG--TTC-CGAGTAAC--GGAAT-ATAGTCCAACTAA
gi|144301 : TGTGTGATATGGT----CAAAATATACTGTA------ATTCAAATGTTTTG--ATC-TGAGTAAT--GGAAT-ATAATTCATCTAA
gi|144302 : TGTGTGATATGGT----CGAAATATGCTGTA------AGTAAAATGTTTTG--TTC-TGAGTAAT--GAAAT-ATAATTGATCT
gi|144303 : TGAGTGATACGGT----CGAAATATTCTGTA------AGTCAAATGTTTTGTTTTT-TGACTAAT--GGAATAAAAGTTGA-CTAA
gi|144304 : TGTGTGATACGGT----AGAAATGTACTGTA------AATCAAATGTTTTG--TTC-TTAGTAAT--AGAAT-ATATTTCATGTAA
gi|144305 : TGTGTGATATGGT----CGAAATATACTGTA------AGTCAAATGTTTGG--TTT-TGAGTAGT--ATAAT-GTA-TTCATCTAA
gi|144306 : TATATGATACAGT----CAAAGTATGCTGTA------AGACAAAAGTTTTG--TTC-TGAGTAAT--GGAAT-GTA-TTCA
gi|144307 : TGTGATACGGC----CGAAATATTCTGTG------AGTCAAATGTTTTG--TTA-TGAGTAGT--CGCAT-ACAGTTCATCTAA
gi|144308 : TGTGATACGGTCGGTCGAAATATCCTGTA------CGTCAAATGTTTTG--TTCACAAGTTAC--GGAAT-ATTGTTCATCTAA
gi|144309 : TGCGATACAAT----CGATATGTACTGCA------AG---AACGTTTTG--TAC-TGAGTAAT--GGAAT-ATA-TTTATCTAA
gi|144310 : TGTTATACAGT----TAAAATTTACTGTA------ATTCAAAACTTTTG--TTC-TGAGTAATTGGAAAT-ATA---CATC
gi|144311 : ------AGTCAA-TGTTTTG--TTC-TGAGTAAT--GGAAT-AAAGTTCATCTAA
gi|144312 : AAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAATTCATCT
Alignments
lowQualScore : 6666 1 777777 33 2 33 2 8
lowQualScore : .... . ...... .. . .. . .
lowQualScore : 1111 0 777777 44 5 44 5 1
consensus : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
Reference ( family-897 ) : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
gi|144297 : TGTGTGACATGTT----CGAAATATTCTGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
gi|144298 : TGTGTGATACAGT----CGAAATACTCTGTACCAGTTAGTCAAAT-TTTTG--TTT-GGAGTAAT--GAAAT-ATAGTTC
gi|144299 : TGTGTGCTACGGT----CGAAATATACGGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--AGAAT-ATAATTCATCTAA
gi|144300 : TGTGTGATATGAT----CGAAATATTCTGTA------AGTCAAATGTTTTG--TTC-CGAGTAAC--GGAAT-ATAGTCCAACTAA
gi|144301 : TGTGTGATATGGT----CAAAATATACTGTA------ATTCAAATGTTTTG--ATC-TGAGTAAT--GGAAT-ATAATTCATCTAA
gi|144302 : TGTGTGATATGGT----CGAAATATGCTGTA------AGTAAAATGTTTTG--TTC-TGAGTAAT--GAAAT-ATAATTGATCT
gi|144303 : TGAGTGATACGGT----CGAAATATTCTGTA------AGTCAAATGTTTTGTTTTT-TGACTAAT--GGAATAAAAGTTGA-CTAA
gi|144304 : TGTGTGATACGGT----AGAAATGTACTGTA------AATCAAATGTTTTG--TTC-TTAGTAAT--AGAAT-ATATTTCATGTAA
gi|144305 : TGTGTGATATGGT----CGAAATATACTGTA------AGTCAAATGTTTGG--TTT-TGAGTAGT--ATAAT-GTA-TTCATCTAA
gi|144306 : TATATGATACAGT----CAAAGTATGCTGTA------AGACAAAAGTTTTG--TTC-TGAGTAAT--GGAAT-GTA-TTCA
gi|144307 : TGTGATACGGC----CGAAATATTCTGTG------AGTCAAATGTTTTG--TTA-TGAGTAGT--CGCAT-ACAGTTCATCTAA
gi|144308 : TGTGATACGGTCGGTCGAAATATCCTGTA------CGTCAAATGTTTTG--TTCACAAGTTAC--GGAAT-ATTGTTCATCTAA
gi|144309 : TGCGATACAAT----CGATATGTACTGCA------AG---AACGTTTTG--TAC-TGAGTAAT--GGAAT-ATA-TTTATCTAA
gi|144310 : TGTTATACAGT----TAAAATTTACTGTA------ATTCAAAACTTTTG--TTC-TGAGTAATTGGAAAT-ATA---CATC
gi|144311 : ------AGTCAA-TGTTTTG--TTC-TGAGTAAT--GGAAT-AAAGTTCATCTAA
gi|144312 : AAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAATTCATCT
blockSeqs : CGGT T CCAGTT TT A TG A G
blockSeqs : . A . . . . . A
blockSeqs : . T . . . . . G
blockSeqs : . A . . . . . A
blockSeqs : . G . . . . . A
blockSeqs : . T . . . . . G
blockSeqs : . A . . . . . T
blockSeqs : . A . . . . . G
blockSeqs : . G . . . . . G
blockSeqs : . T . . . . . G
blockSeqs : . C . . . . . A
blockSeqs : . A . . . . . .
blockSeqs : . A . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
finalCons : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
Alignments
lowQualScore : 6666 1 777777 33 2 33 2 8
lowQualScore : .... . ...... .. . .. . .
lowQualScore : 1111 0 777777 44 5 44 5 1
consensus : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
Reference ( family-897 ) : TGTGTGATACGGT----CGAAATATNCTGTA------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
gi|144297 : TGTGTGACATGTT----CGAAATATTCTGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAGTTCATCTAA
gi|144298 : TGTGTGATACAGT----CGAAATACTCTGTACCAGTTAGTCAAAT-TTTTG--TTT-GGAGTAAT--GAAAT-ATAGTTC
gi|144299 : TGTGTGCTACGGT----CGAAATATACGGTT------AGTCAAATGTTTTG--TTC-TGAGTAAT--AGAAT-ATAATTCATCTAA
gi|144300 : TGTGTGATATGAT----CGAAATATTCTGTA------AGTCAAATGTTTTG--TTC-CGAGTAAC--GGAAT-ATAGTCCAACTAA
gi|144301 : TGTGTGATATGGT----CAAAATATACTGTA------ATTCAAATGTTTTG--ATC-TGAGTAAT--GGAAT-ATAATTCATCTAA
gi|144302 : TGTGTGATATGGT----CGAAATATGCTGTA------AGTAAAATGTTTTG--TTC-TGAGTAAT--GAAAT-ATAATTGATCT
gi|144303 : TGAGTGATACGGT----CGAAATATTCTGTA------AGTCAAATGTTTTGTTTTT-TGACTAAT--GGAATAAAAGTTGA-CTAA
gi|144304 : TGTGTGATACGGT----AGAAATGTACTGTA------AATCAAATGTTTTG--TTC-TTAGTAAT--AGAAT-ATATTTCATGTAA
gi|144305 : TGTGTGATATGGT----CGAAATATACTGTA------AGTCAAATGTTTGG--TTT-TGAGTAGT--ATAAT-GTA-TTCATCTAA
gi|144306 : TATATGATACAGT----CAAAGTATGCTGTA------AGACAAAAGTTTTG--TTC-TGAGTAAT--GGAAT-GTA-TTCA
gi|144307 : TGTGATACGGC----CGAAATATTCTGTG------AGTCAAATGTTTTG--TTA-TGAGTAGT--CGCAT-ACAGTTCATCTAA
gi|144308 : TGTGATACGGTCGGTCGAAATATCCTGTA------CGTCAAATGTTTTG--TTCACAAGTTAC--GGAAT-ATTGTTCATCTAA
gi|144309 : TGCGATACAAT----CGATATGTACTGCA------AG---AACGTTTTG--TAC-TGAGTAAT--GGAAT-ATA-TTTATCTAA
gi|144310 : TGTTATACAGT----TAAAATTTACTGTA------ATTCAAAACTTTTG--TTC-TGAGTAATTGGAAAT-ATA---CATC
gi|144311 : ------AGTCAA-TGTTTTG--TTC-TGAGTAAT--GGAAT-AAAGTTCATCTAA
gi|144312 : AAATGTTTTG--TTC-TGAGTAAT--GGAAT-ATAATTCATCT