lowQualScore                  :                      22     44 22  1       888888                
lowQualScore                  :                      ..     .. ..  .       ......                
lowQualScore                  :                      66     55 66  9       222222                
consensus                     : GTGTCATATTATATTTTCACC--CGCCT--A--AA-AATTCACCC----GCGGGTGAAAATATAA
Reference ( gi|40021 )        : GTGTCATATTATATTTTCACC--CGCCT--A--AA-AATTCACCC----GCGGGTGAAAATATAA
gi|40024                      : GTGTTATATTATATTTTCACC--CGCCT--A--AA-AATTCACCC----GTTGGTGAAAATATAA
gi|40022                      : GTGTCATATTATATTTTTACC--CGCCT--A--AA-AATTCACCC----GCAGGTGAAAATTTA
gi|40026                      : GTGTCATATCATATTTTCACC--CGCCT--A--AA-AATTCACCT----GTGGGTGAAAAAATAA
gi|40023                      : GTGTCATATTATATTTTCACC--CGCCT--T--AA-AATTCACCC----ACAGGTGAAAATAT
gi|40025                      : GTGTCATATTATATTTTCAGC--CGCCT--A--AA-AATTCACCC----GCCGGTAAAAATAT
gi|40029                      : GTGTCGTAGTATATTTTCACC--CGTCT--A--AA-AATTCACCT----AAGGGTGAAAATATAA
gi|40027                      : GTGTCACATTATATTTTCACC--CACCT--A--AA-AATTCACTC----ACAGGTG--AATATAA
gi|40030                      : GTGTCATATTATATTTTCACC--CGCCT--A--AA-AGTTCA--------CGGGTAAAAATAT
gi|40028                      : GTGTCGTATAATATTTTCAAC--CACCTT-A--AA-AATTCACCC----GCAGATGAAAATATAA
gi|40031                      : GTGTCATATTATATTTTCACC--GGCCT--A--AA-AATTCTGCTGAAGGTGGGTGAAAATAT
gi|40032                      : GTGTCAAATTATATTTCCAAC--CACCT--A--AATATTTCACTC----ACAGGTGAAAATATGA
gi|40033                      : GTGTCATACTATATTTTCACC--CGCTT--T--AA-AATTCAC
gi|40034                      :  TGTCGTATTATATTTTCACC--CACCT--A--AA-AATTCATCC----GCGGGTGAAAATATAA
gi|40035                      :   GTAATATTATATTTTCACC--CGCCC--A--AA-AATTCACCC----GTGGGTGAAAATATAA
gi|40024                      :         TTATATTTTCACCAACGGGT--G--AA-TTTTTAG------GCGGGTGAAAATATAA
gi|40034                      : gtgttataTTATATTTTCACC--CGCGG--A--TG-AATTTTTAG----GTGGGTGAAAATATAA
gi|40035                      :  tgtcgtaTTATATTTTCACC--CACGG--G--TG-AATTTTTGG----GCGGGTGAAAATATAA
gi|40036                      :   gtaataTTATATTTTCACC--CGCCT--A--AA-AATTCACCC----GTGGGTGAAAATGT
gi|40036                      :           ACATTTTCACC--CACGG--G--TG-AATTTTTAG----GCGGGTGAAAATATAA
gi|40030                      :           ATATTTTTACC--CG--T--G--AA-CTTTTAG------GCGGGTGAAAATATAA
gi|40031                      :   gtgtcataATATTTTCACC--CACCTTCAGCAG-AATTTTTAG----GCCGGTGAAAATATAA

lowQualScore                  :                           2   2         5555                
lowQualScore                  :                           .   .         ....                
lowQualScore                  :                           5   5         7777                
consensus                     : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
Reference ( family-893 )      : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
gi|40021                      : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
gi|40022                      : GTGTCATATTATATTTTTACCCGCCT-AAA-AATTCACCC----GCAGGTGAAAATTTA
gi|40023                      : GTGTCATATTATATTTTCACCCGCCT-TAA-AATTCACCC----ACAGGTGAAAATAT
gi|40024                      : GTGTTATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GTTGGTGAAAATATAA
gi|40025                      : GTGTCATATTATATTTTCAGCCGCCT-AAA-AATTCACCC----GCCGGTAAAAATAT
gi|40026                      : GTGTCATATCATATTTTCACCCGCCT-AAA-AATTCACCT----GTGGGTGAAAAAATAA
gi|40027                      : GTGTCACATTATATTTTCACCCACCT-AAA-AATTCACTC----ACAGGTG--AATATAA
gi|40028                      : GTGTCGTATAATATTTTCAACCACCTTAAA-AATTCACCC----GCAGATGAAAATATAA
gi|40029                      : GTGTCGTAGTATATTTTCACCCGTCT-AAA-AATTCACCT----AAGGGTGAAAATATAA
gi|40030                      : GTGTCATATTATATTTTCACCCGCCT-AAA-AGTTCA--------CGGGTAAAAATAT
gi|40031                      : GTGTCATATTATATTTTCACCGGCCT-AAA-AATTCTGCTGAAGGTGGGTGAAAATAT
gi|40032                      : GTGTCAAATTATATTTCCAACCACCT-AAATATTTCACTC----ACAGGTGAAAATATGA
gi|40033                      : GTGTCATACTATATTTTCACCCGCTT-TAA-AATTCAC
gi|40034                      :  TGTCGTATTATATTTTCACCCACCT-AAA-AATTCATCC----GCGGGTGAAAATATAA
gi|40035                      :   GTAATATTATATTTTCACCCGCCC-AAA-AATTCACCC----GTGGGTGAAAATATAA
gi|40036                      :         TTATATTTTCACCCGCCT-AAA-AATTCACCC----GTGGGTGAAAATGT

lowQualScore                  :                           2   2         5555                
lowQualScore                  :                           .   .         ....                
lowQualScore                  :                           5   5         7777                
consensus                     : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
Reference ( family-893 )      : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
gi|40021                      : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
gi|40022                      : GTGTCATATTATATTTTTACCCGCCT-AAA-AATTCACCC----GCAGGTGAAAATTTA
gi|40023                      : GTGTCATATTATATTTTCACCCGCCT-TAA-AATTCACCC----ACAGGTGAAAATAT
gi|40024                      : GTGTTATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GTTGGTGAAAATATAA
gi|40025                      : GTGTCATATTATATTTTCAGCCGCCT-AAA-AATTCACCC----GCCGGTAAAAATAT
gi|40026                      : GTGTCATATCATATTTTCACCCGCCT-AAA-AATTCACCT----GTGGGTGAAAAAATAA
gi|40027                      : GTGTCACATTATATTTTCACCCACCT-AAA-AATTCACTC----ACAGGTG--AATATAA
gi|40028                      : GTGTCGTATAATATTTTCAACCACCTTAAA-AATTCACCC----GCAGATGAAAATATAA
gi|40029                      : GTGTCGTAGTATATTTTCACCCGTCT-AAA-AATTCACCT----AAGGGTGAAAATATAA
gi|40030                      : GTGTCATATTATATTTTCACCCGCCT-AAA-AGTTCA--------CGGGTAAAAATAT
gi|40031                      : GTGTCATATTATATTTTCACCGGCCT-AAA-AATTCTGCTGAAGGTGGGTGAAAATAT
gi|40032                      : GTGTCAAATTATATTTCCAACCACCT-AAATATTTCACTC----ACAGGTGAAAATATGA
gi|40033                      : GTGTCATACTATATTTTCACCCGCTT-TAA-AATTCAC
gi|40034                      :  TGTCGTATTATATTTTCACCCACCT-AAA-AATTCATCC----GCGGGTGAAAATATAA
gi|40035                      :   GTAATATTATATTTTCACCCGCCC-AAA-AATTCACCC----GTGGGTGAAAATATAA
gi|40036                      :         TTATATTTTCACCCGCCT-AAA-AATTCACCC----GTGGGTGAAAATGT


blockSeqs                     :                           T   T         GAAG
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .         .   
blockSeqs                     :                           .   .             


blockSeqCons                  : 
originalCons                  : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
finalCons                     : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA

lowQualScore                  :                           2   2         5555                
lowQualScore                  :                           .   .         ....                
lowQualScore                  :                           5   5         7777                
consensus                     : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
Reference ( family-893 )      : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
gi|40021                      : GTGTCATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GCGGGTGAAAATATAA
gi|40022                      : GTGTCATATTATATTTTTACCCGCCT-AAA-AATTCACCC----GCAGGTGAAAATTTA
gi|40023                      : GTGTCATATTATATTTTCACCCGCCT-TAA-AATTCACCC----ACAGGTGAAAATAT
gi|40024                      : GTGTTATATTATATTTTCACCCGCCT-AAA-AATTCACCC----GTTGGTGAAAATATAA
gi|40025                      : GTGTCATATTATATTTTCAGCCGCCT-AAA-AATTCACCC----GCCGGTAAAAATAT
gi|40026                      : GTGTCATATCATATTTTCACCCGCCT-AAA-AATTCACCT----GTGGGTGAAAAAATAA
gi|40027                      : GTGTCACATTATATTTTCACCCACCT-AAA-AATTCACTC----ACAGGTG--AATATAA
gi|40028                      : GTGTCGTATAATATTTTCAACCACCTTAAA-AATTCACCC----GCAGATGAAAATATAA
gi|40029                      : GTGTCGTAGTATATTTTCACCCGTCT-AAA-AATTCACCT----AAGGGTGAAAATATAA
gi|40030                      : GTGTCATATTATATTTTCACCCGCCT-AAA-AGTTCA--------CGGGTAAAAATAT
gi|40031                      : GTGTCATATTATATTTTCACCGGCCT-AAA-AATTCTGCTGAAGGTGGGTGAAAATAT
gi|40032                      : GTGTCAAATTATATTTCCAACCACCT-AAATATTTCACTC----ACAGGTGAAAATATGA
gi|40033                      : GTGTCATACTATATTTTCACCCGCTT-TAA-AATTCAC
gi|40034                      :  TGTCGTATTATATTTTCACCCACCT-AAA-AATTCATCC----GCGGGTGAAAATATAA
gi|40035                      :   GTAATATTATATTTTCACCCGCCC-AAA-AATTCACCC----GTGGGTGAAAATATAA
gi|40036                      :         TTATATTTTCACCCGCCT-AAA-AATTCACCC----GTGGGTGAAAATGT